AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142470 MtrunA17_Chr8g0384061 96.589 645 21 1 1 644 1 645 0.0 1277
Msa0142470 MtrunA17_Chr3g0129821 55.075 670 221 13 8 644 6 628 0.0 622
Msa0142470 MtrunA17_Chr1g0146771 36.023 694 315 20 46 644 50 709 4.27e-127 391
Msa0142470 MtrunA17_Chr3g0127171 37.571 708 343 20 15 642 12 700 3.22e-126 389
Msa0142470 MtrunA17_Chr8g0388841 34.553 683 345 15 47 644 49 714 1.49e-113 356
Msa0142470 MtrunA17_Chr2g0317931 35.769 520 245 8 203 644 350 858 1.64e-92 304
Msa0142470 MtrunA17_Chr7g0238321 39.481 385 182 3 195 528 385 769 3.80e-80 273
Msa0142470 MtrunA17_Chr4g0067151 27.273 286 179 9 221 498 19 283 1.29e-25 108
Msa0142470 MtrunA17_Chr1g0185501 24.911 281 171 10 223 494 21 270 2.29e-18 86.7
Msa0142470 MtrunA17_Chr3g0136971 26.554 177 107 6 226 399 458 614 1.60e-13 73.9
Msa0142470 MtrunA17_Chr8g0352351 22.000 250 176 6 275 506 208 456 3.48e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142470 AT1G48870.2 44.111 467 205 9 193 641 162 590 1.39e-120 371
Msa0142470 AT1G48870.3 44.111 467 205 9 193 641 162 590 1.39e-120 371
Msa0142470 AT1G48870.1 44.111 467 205 9 193 641 162 590 1.39e-120 371
Msa0142470 AT5G24320.1 34.891 685 339 15 40 644 37 694 8.24e-116 362
Msa0142470 AT5G24320.2 34.789 687 337 16 40 642 37 696 2.85e-114 358
Msa0142470 AT5G53500.2 40.535 523 230 14 172 642 159 652 1.30e-112 352
Msa0142470 AT5G53500.1 40.535 523 230 14 172 642 159 652 1.30e-112 352
Msa0142470 AT5G42010.1 37.681 552 238 16 166 644 191 709 1.22e-101 325
Msa0142470 AT1G64610.2 38.140 527 236 14 169 644 160 647 1.38e-101 323
Msa0142470 AT1G64610.1 38.140 527 236 14 169 644 160 647 1.38e-101 323
Msa0142470 AT3G15470.1 37.673 507 241 9 203 644 387 883 4.08e-97 318
Msa0142470 AT5G54200.1 37.549 514 252 11 193 644 319 825 1.98e-93 306
Msa0142470 AT5G42010.2 40.503 358 164 4 166 474 191 548 1.56e-80 266
Msa0142470 AT5G02430.1 34.749 518 256 9 204 644 386 898 3.72e-79 270
Msa0142470 AT2G37670.2 39.071 366 178 4 204 527 380 742 9.62e-75 258
Msa0142470 AT2G37670.1 39.071 366 178 4 204 527 379 741 1.06e-74 257
Msa0142470 AT3G49660.1 25.086 291 185 9 216 498 11 276 3.94e-22 98.2
Msa0142470 AT4G02730.1 26.814 317 188 12 188 494 5 287 1.19e-19 91.3
Msa0142470 AT2G43770.1 24.731 279 173 9 225 493 49 300 6.58e-16 80.1
Msa0142470 AT5G25150.1 27.684 177 105 6 226 399 457 613 1.23e-12 71.6
Msa0142470 AT5G25150.2 27.684 177 105 6 226 399 457 613 1.28e-12 71.6
Msa0142470 AT2G16405.1 28.105 153 91 2 244 395 188 322 2.11e-12 70.5

Find 162 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATCCAATATGCAGATTT+TGG 0.140444 1_4:-1404521 None:intergenic
ATCAAGACATTCCACAATTT+TGG 0.147050 1_4:+1405294 Msa0142470:CDS
GTGAGGCAAAAGAAGAATTT+TGG 0.149020 1_4:+1403066 Msa0142470:CDS
TAATAAGTTGCTTAGAATTT+TGG 0.155363 1_4:+1405429 Msa0142470:three_prime_UTR
TCACCTTCTGGTAAAGTATC+TGG 0.167154 1_4:+1402924 Msa0142470:CDS
AGGACTCGCGCGTGTATATT+TGG 0.192771 1_4:+1404854 Msa0142470:CDS
CAGTCCCAATGGTCAGTATT+TGG 0.195556 1_4:+1403310 Msa0142470:CDS
TTTGTAGTTGGTTCTCTTAC+AGG 0.204905 1_4:+1404135 Msa0142470:CDS
AGAGTAAGTGGTTAATTAAT+TGG 0.226469 1_4:-1405727 None:intergenic
TTGATGGTAAAGTTCGAATA+TGG 0.250806 1_4:+1403909 Msa0142470:CDS
TGGCTTGCCTGTTAGGCTTT+AGG 0.253307 1_4:+1405314 Msa0142470:CDS
GCCTTCAATGTCGTGAATTT+AGG 0.264692 1_4:+1405571 Msa0142470:three_prime_UTR
CAACAAGATTACTGGCATTC+AGG 0.268264 1_4:+1404336 Msa0142470:CDS
TCTTGTTGGAAGATCTTAAA+AGG 0.284736 1_4:+1402991 Msa0142470:CDS
TAAAATTCCTCTCTAGAAAA+AGG 0.287150 1_4:+1402050 Msa0142470:five_prime_UTR
TTCCAGTGATATCTTGGATT+TGG 0.289851 1_4:+1403466 Msa0142470:CDS
TAATTCTCTGACAGTTGTTT+TGG 0.290037 1_4:-1404480 None:intergenic
CTTCTTTCCTTCACACTAAT+AGG 0.297940 1_4:-1402753 None:intergenic
GGTAATTGGTTCTTCATTGA+TGG 0.304868 1_4:+1405093 Msa0142470:CDS
CTTATTATACTTAGAATCTA+AGG 0.306553 1_4:-1405413 None:intergenic
AATGCAAGCATTTCACCTTC+TGG 0.331414 1_4:+1402912 Msa0142470:CDS
TCGATAATGGTAAAGCTAAT+AGG 0.334017 1_4:+1403093 Msa0142470:CDS
TTATTGACTGGGCAGATATA+CGG 0.336332 1_4:+1403951 Msa0142470:CDS
GATTTGTATATTTACACTTT+AGG 0.337337 1_4:+1405545 Msa0142470:three_prime_UTR
GATGACTGGTCGGTCACATT+GGG 0.337398 1_4:+1402852 Msa0142470:CDS
GCATATTCATTCATGGCTTA+AGG 0.339710 1_4:-1401715 None:intergenic
TCTTTACTCTATGGTCTGTT+AGG 0.339958 1_4:-1401675 None:intergenic
GAGCTATGCATATTCATTCA+TGG 0.343670 1_4:-1401722 None:intergenic
GAGCTCACAAAGGACTAATA+TGG 0.353947 1_4:+1403276 Msa0142470:CDS
TATTCGAACTTTACCATCAA+TGG 0.358267 1_4:-1403906 None:intergenic
AGCGATAACTCTTTACTCTA+TGG 0.371177 1_4:-1401684 None:intergenic
ATTTAGCTTACACTTCTTCC+AGG 0.372892 1_4:+1402799 Msa0142470:CDS
TTTATCAGTGGATCCATTGA+TGG 0.375545 1_4:+1403893 Msa0142470:CDS
TAATTGGTGAGAGAGATATT+TGG 0.377259 1_4:+1402472 Msa0142470:five_prime_UTR
TTCTGAAGCTGAAGTCTTGT+TGG 0.380038 1_4:+1402977 Msa0142470:CDS
TGATCTATTCTATGACTCAT+TGG 0.384024 1_4:+1402635 Msa0142470:CDS
ATCAACTAACAAAATGTTAG+AGG 0.387196 1_4:-1405629 None:intergenic
AGATTCCAAAATCTGCATAT+TGG 0.388192 1_4:+1404516 Msa0142470:CDS
GATTAAATATGTGATTTGTA+TGG 0.392101 1_4:+1405693 Msa0142470:three_prime_UTR
ACTCTACTACACTATTAGTT+AGG 0.394557 1_4:-1401815 None:intergenic
TGGTCATTCCAGTGATATCT+TGG 0.395337 1_4:+1403460 Msa0142470:CDS
TAATAGTGTAGTAGAGTAAC+TGG 0.396285 1_4:+1401821 Msa0142470:five_prime_UTR
GCATTAGGCAACAAGATTAC+TGG 0.396820 1_4:+1404328 Msa0142470:CDS
GCATTGTCCTAAAGCCTAAC+AGG 0.399732 1_4:-1405321 None:intergenic
TCAAGTTCTTGACAAATTCC+AGG 0.401016 1_4:+1405523 Msa0142470:three_prime_UTR
TCGCCACTTCAAGAATTGTT+TGG 0.405306 1_4:+1403440 Msa0142470:CDS
TCTGGGAAGTTGGTTCTCTC+TGG 0.410316 1_4:+1402942 Msa0142470:CDS
TTCAGAACCAAACCCTTCTT+CGG 0.411107 1_4:-1402688 None:intergenic
GATTTGGATTTACAATTTCA+AGG 0.415822 1_4:+1402501 Msa0142470:five_prime_UTR
CATGGAAAGAAGAAAGCATT+AGG 0.419424 1_4:+1404313 Msa0142470:CDS
CCCACTTGATGTAAATGAAC+CGG 0.420329 1_4:-1404809 None:intergenic
AAGTGTAAATATACAAATCC+TGG 0.424976 1_4:-1405541 None:intergenic
TGGATAAAACTGTTCGCGCT+TGG 0.427183 1_4:+1403627 Msa0142470:CDS
CATGTGCAGGGATTTGTAGT+TGG 0.427358 1_4:+1404123 Msa0142470:intron
CTAATGCTTTCTTCTTTCCA+TGG 0.431274 1_4:-1404312 None:intergenic
TGCAACAGTTACGCCCTTGA+AGG 0.436499 1_4:-1404944 None:intergenic
GATTCTTCTTTCGTCTTCGA+TGG 0.446992 1_4:+1403607 Msa0142470:intron
CAAATCAAACCTAGAGTAAG+TGG 0.447205 1_4:-1405739 None:intergenic
ATGGTCTGTTAGGTGGTCAT+AGG 0.451535 1_4:-1401665 None:intergenic
CACCTTCTGGTAAAGTATCT+GGG 0.458891 1_4:+1402925 Msa0142470:CDS
TCCGGTTCATTTACATCAAG+TGG 0.463250 1_4:+1404808 Msa0142470:CDS
TGAGAAGCATTGATGGCTAA+TGG 0.463686 1_4:-1401772 None:intergenic
TGATGGTAAAGTTCGAATAT+GGG 0.463939 1_4:+1403910 Msa0142470:CDS
GTGATATCTTGGATTTGGCC+TGG 0.468041 1_4:+1403471 Msa0142470:CDS
AAGATGGCGTTGTGCGCATA+TGG 0.468274 1_4:+1403345 Msa0142470:CDS
TGATGACTGGTCGGTCACAT+TGG 0.471379 1_4:+1402851 Msa0142470:CDS
ATTAATTAACCACTTACTCT+AGG 0.471804 1_4:+1405730 Msa0142470:three_prime_UTR
CTCAGAAGTAACCTCTAGCT+TGG 0.473947 1_4:-1405043 None:intergenic
TGTTTACCTCTGCATATGCT+TGG 0.476404 1_4:-1402093 None:intergenic
TTCAAGGCGTTGAAAAGTAG+TGG 0.478516 1_4:+1402517 Msa0142470:five_prime_UTR
CAAGAACTTGACATCCATCA+TGG 0.481303 1_4:-1405511 None:intergenic
CATGTTGGAAGTTTCTCCTC+AGG 0.483782 1_4:-1405147 None:intergenic
CTATCAGGCCTTCCATGGTC+AGG 0.488291 1_4:+1404775 Msa0142470:intron
GGGAAACATATCATTTCAGT+TGG 0.490890 1_4:+1404829 Msa0142470:CDS
AGTGGATTGAAGTGGTAAAG+TGG 0.491768 1_4:+1402535 Msa0142470:five_prime_UTR
TATTTATCTGCGCCTCAAGC+TGG 0.494606 1_4:-1404288 None:intergenic
TCGTTCTATCAGGCCTTCCA+TGG 0.502364 1_4:+1404770 Msa0142470:intron
TGGTTATATCATCTGCGTAC+AGG 0.505824 1_4:+1405471 Msa0142470:three_prime_UTR
TTCATTGATGGTACATGTCG+AGG 0.508863 1_4:+1405105 Msa0142470:CDS
CTAGCCAAATACTGACCATT+GGG 0.509035 1_4:-1403314 None:intergenic
AACTTCAATGACTTCAAAAG+TGG 0.509136 1_4:+1404877 Msa0142470:CDS
TATTGACTGGGCAGATATAC+GGG 0.510784 1_4:+1403952 Msa0142470:CDS
TTGGCTAGTGGAGGTGAAGA+TGG 0.511823 1_4:+1403329 Msa0142470:CDS
TTACTCTATGGTCTGTTAGG+TGG 0.513137 1_4:-1401672 None:intergenic
GCTATAAGTTATCAACAAGA+TGG 0.514520 1_4:+1403986 Msa0142470:CDS
GTGGATTGAAGTGGTAAAGT+GGG 0.514543 1_4:+1402536 Msa0142470:five_prime_UTR
GGAAGTTGGTTCTCTCTGGA+TGG 0.518254 1_4:+1402946 Msa0142470:CDS
GCCTAAATTCACGACATTGA+AGG 0.519406 1_4:-1405572 None:intergenic
ATGTCGTGAATTTAGGCCAC+AGG 0.520700 1_4:+1405578 Msa0142470:three_prime_UTR
ATAGTAGCAGCTGGCAGTGA+TGG 0.524175 1_4:+1405267 Msa0142470:CDS
CTATTAGTGTGAAGGAAAGA+AGG 0.531509 1_4:+1402754 Msa0142470:CDS
AATCATTGTCAAATCCATGA+TGG 0.532182 1_4:+1405497 Msa0142470:three_prime_UTR
TGGTAAAGTATCTGGGAAGT+TGG 0.533172 1_4:+1402932 Msa0142470:CDS
ACTAGCCAAATACTGACCAT+TGG 0.537399 1_4:-1403315 None:intergenic
GTGAAGAACGAGTTATTGAC+TGG 0.539351 1_4:+1403939 Msa0142470:CDS
ATCATTTGGAAGGGAAACAA+AGG 0.543245 1_4:-1403399 None:intergenic
TTTCTCTTGTGAACAAACCC+TGG 0.543560 1_4:-1402817 None:intergenic
AGGAAAATATTTCCAGCTTG+AGG 0.544685 1_4:+1404276 Msa0142470:intron
TGTCACGAAGATAGTAGCTA+TGG 0.545197 1_4:+1405213 Msa0142470:CDS
GAGAGGATCGTGGCAAGCAG+TGG 0.545339 1_4:+1402879 Msa0142470:CDS
TTTAGCTTACACTTCTTCCA+GGG 0.546525 1_4:+1402800 Msa0142470:CDS
TGGTCAGGAAGTCAGATGTC+CGG 0.560460 1_4:+1404790 Msa0142470:CDS
GGGTTTGGTTCTGAAAGGAG+AGG 0.560825 1_4:+1402696 Msa0142470:CDS
AATGAAAATTACTTTATCAG+TGG 0.560882 1_4:+1403881 Msa0142470:CDS
GGCCAAATCCAAGATATCAC+TGG 0.565834 1_4:-1403468 None:intergenic
CTGAGGAGAAACTTCCAACA+TGG 0.568255 1_4:+1405148 Msa0142470:CDS
TATTAGTGTGAAGGAAAGAA+GGG 0.568848 1_4:+1402755 Msa0142470:CDS
CAAGAGCACAGACAGAGAGA+AGG 0.571987 1_4:+1403044 Msa0142470:CDS
AAGAAGGGTTTGGTTCTGAA+AGG 0.572573 1_4:+1402691 Msa0142470:CDS
AAGGAATATATCAGAAACAT+GGG 0.572905 1_4:+1405236 Msa0142470:CDS
GAAGGGAAACAAAGGGAGGA+CGG 0.573342 1_4:-1403391 None:intergenic
CAAGCTAGAGGTTACTTCTG+AGG 0.574127 1_4:+1405044 Msa0142470:CDS
TCTGACTTCCTGACCATGGA+AGG 0.577834 1_4:-1404783 None:intergenic
AATGGTCAGTATTTGGCTAG+TGG 0.581244 1_4:+1403317 Msa0142470:CDS
GCACAGACAGAGAGAAGGTG+AGG 0.583206 1_4:+1403049 Msa0142470:CDS
AACATCAGGAAAGGCGACAA+AGG 0.583659 1_4:+1403140 Msa0142470:CDS
TCATTTGGAAGGGAAACAAA+GGG 0.585294 1_4:-1403398 None:intergenic
TACTTACCAAAGCCTTTGTG+AGG 0.587036 1_4:-1403683 None:intergenic
GAAGGAATATATCAGAAACA+TGG 0.587961 1_4:+1405235 Msa0142470:CDS
GAATGAGCCTATTAGTGTGA+AGG 0.589021 1_4:+1402746 Msa0142470:CDS
ACATATCATTTCAGTTGGAG+AGG 0.592725 1_4:+1404834 Msa0142470:CDS
TGACCAAACAATTCTTGAAG+TGG 0.593619 1_4:-1403443 None:intergenic
TTCCCAGATACTTTACCAGA+AGG 0.594322 1_4:-1402927 None:intergenic
ACAAGAGGTAAATCCCATGT+TGG 0.595289 1_4:-1405162 None:intergenic
AGGATTCTTTGCATGGCCTG+TGG 0.596299 1_4:-1405594 None:intergenic
CGGTCACATTGGGGTCGGAG+AGG 0.600622 1_4:+1402862 Msa0142470:CDS
ATGACTGGTCGGTCACATTG+GGG 0.606700 1_4:+1402853 Msa0142470:CDS
CTGGTCGGTCACATTGGGGT+CGG 0.607068 1_4:+1402857 Msa0142470:CDS
GCGTAACTGTTGCAATACCT+TGG 0.607882 1_4:+1404953 Msa0142470:CDS
GAAGGTGGATTTGAAGCTTG+TGG 0.612799 1_4:+1405451 Msa0142470:three_prime_UTR
AAGGCGGCGTGAGTATGAAG+TGG 0.612912 1_4:+1403010 Msa0142470:CDS
GAGTTCAGTGAGGTATACAT+TGG 0.614698 1_4:+1403242 Msa0142470:CDS
TCACATTCATCTTCTACAAG+AGG 0.615378 1_4:-1405177 None:intergenic
TGTTAGTTGATTTATATACC+AGG 0.615971 1_4:+1405641 Msa0142470:three_prime_UTR
GGTCTAACGATAGTAGCAGC+TGG 0.616322 1_4:+1405258 Msa0142470:CDS
CCGGTTCATTTACATCAAGT+GGG 0.623114 1_4:+1404809 Msa0142470:CDS
TACTTCTATGACATGGCCTG+AGG 0.623220 1_4:+1405131 Msa0142470:CDS
TAACAGGCAAGCCAAAATTG+TGG 0.625636 1_4:-1405305 None:intergenic
ACTTACCAAAGCCTTTGTGA+GGG 0.626300 1_4:-1403682 None:intergenic
GACATCTGACTTCCTGACCA+TGG 0.626991 1_4:-1404787 None:intergenic
GATGGTAAAGTTCGAATATG+GGG 0.630516 1_4:+1403911 Msa0142470:CDS
ACTATGAAATTCAGTCCCAA+TGG 0.634522 1_4:+1403299 Msa0142470:CDS
GAGGCGCAGATAAATATCCA+TGG 0.635034 1_4:+1404295 Msa0142470:CDS
GAATAAAACTCGTAGAGTGA+AGG 0.636114 1_4:+1403193 Msa0142470:CDS
ACGAAGATAGTAGCTATGGA+AGG 0.636891 1_4:+1405217 Msa0142470:CDS
TGGTTACCAAGCATATGCAG+AGG 0.639701 1_4:+1402087 Msa0142470:five_prime_UTR
TGAAAAGTAGTGGATTGAAG+TGG 0.641471 1_4:+1402527 Msa0142470:five_prime_UTR
GAGATTGTTCAGAAATACAA+AGG 0.642821 1_4:+1404547 Msa0142470:CDS
ATTGGGGTCGGAGAGGATCG+TGG 0.644123 1_4:+1402869 Msa0142470:CDS
TGAGGAGAAACTTCCAACAT+GGG 0.648751 1_4:+1405149 Msa0142470:CDS
GAGGTGGATGGAGTTCAGTG+AGG 0.649416 1_4:+1403232 Msa0142470:CDS
GGTCAGTATTTGGCTAGTGG+AGG 0.649574 1_4:+1403320 Msa0142470:CDS
GAGGTTCTACTTCTATGACA+TGG 0.678336 1_4:+1405124 Msa0142470:CDS
ACTCACATCTGAATTAGACC+AGG 0.684342 1_4:-1403489 None:intergenic
AAAATTGAAAACAATCAACA+TGG 0.686103 1_4:-1405343 None:intergenic
TGTTGGAAGATCTTAAAAGG+CGG 0.697921 1_4:+1402994 Msa0142470:CDS
CAAGAAATTAGAGCTCACAA+AGG 0.699622 1_4:+1403266 Msa0142470:CDS
TGAAGAACGAGTTATTGACT+GGG 0.701967 1_4:+1403940 Msa0142470:CDS
ACTGTTGCAATACCTTGGTG+TGG 0.716842 1_4:+1404958 Msa0142470:CDS
AGGAATATATCAGAAACATG+GGG 0.726541 1_4:+1405237 Msa0142470:CDS
TTTGGAAGGGAAACAAAGGG+AGG 0.738048 1_4:-1403395 None:intergenic
GGCATGAAAACAGATAGACG+TGG 0.825232 1_4:+1404979 Msa0142470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATGAGTATAAATCA+TGG - chr1_4:1401940-1401959 None:intergenic 15.0%
!! TATAATAATCTATAGTCTAT+TGG + chr1_4:1402300-1402319 Msa0142470:intron 15.0%
!! ATAATAATCTATAGTCTATT+GGG + chr1_4:1402301-1402320 Msa0142470:intron 15.0%
!!! TTTTGTTTATGATGAAATTT+GGG + chr1_4:1402722-1402741 Msa0142470:CDS 15.0%
!! TCAATTTGAAAAATATCATT+TGG - chr1_4:1403416-1403435 None:intergenic 15.0%
!!! AAATGATATTTTTCAAATTG+AGG + chr1_4:1403415-1403434 Msa0142470:CDS 15.0%
!!! TTTAGAAACTATTTTATCTT+CGG - chr1_4:1404237-1404256 None:intergenic 15.0%
!! ATTAATATGAGTATAAATCA+TGG - chr1_4:1401940-1401959 None:intergenic 15.0%
!! TATAATAATCTATAGTCTAT+TGG + chr1_4:1402300-1402319 Msa0142470:intron 15.0%
!! ATAATAATCTATAGTCTATT+GGG + chr1_4:1402301-1402320 Msa0142470:intron 15.0%
!!! TTTTGTTTATGATGAAATTT+GGG + chr1_4:1402722-1402741 Msa0142470:CDS 15.0%
!! TCAATTTGAAAAATATCATT+TGG - chr1_4:1403416-1403435 None:intergenic 15.0%
!!! AAATGATATTTTTCAAATTG+AGG + chr1_4:1403415-1403434 Msa0142470:CDS 15.0%
!!! TTTAGAAACTATTTTATCTT+CGG - chr1_4:1404237-1404256 None:intergenic 15.0%
!! TAATAATCTATAGTCTATTG+GGG + chr1_4:1402302-1402321 Msa0142470:intron 20.0%
!!! GTTTTGTTTATGATGAAATT+TGG + chr1_4:1402721-1402740 Msa0142470:CDS 20.0%
!! TTGAAAAATATCATTTGGAA+GGG - chr1_4:1403411-1403430 None:intergenic 20.0%
!! TTTGAAAAATATCATTTGGA+AGG - chr1_4:1403412-1403431 None:intergenic 20.0%
!!! TAAAGTAATTTTCATTGACA+GGG - chr1_4:1403877-1403896 None:intergenic 20.0%
!!! ATAAAGTAATTTTCATTGAC+AGG - chr1_4:1403878-1403897 None:intergenic 20.0%
!! AATGAAAATTACTTTATCAG+TGG + chr1_4:1403881-1403900 Msa0142470:CDS 20.0%
!!! ATCAGATTTCTAATGATTTT+AGG + chr1_4:1404256-1404275 Msa0142470:intron 20.0%
!!! AAGCATTTTAATTTGTATTC+CGG + chr1_4:1404386-1404405 Msa0142470:intron 20.0%
!! AACAATTGAAGTACAAAATA+AGG - chr1_4:1404427-1404446 None:intergenic 20.0%
!! TTCTTCGAAAAAAATGAAAT+CGG + chr1_4:1404900-1404919 Msa0142470:CDS 20.0%
!! AAAATTGAAAACAATCAACA+TGG - chr1_4:1405346-1405365 None:intergenic 20.0%
!!! CAATTTTTCATGAAAAGTTT+TGG + chr1_4:1405359-1405378 Msa0142470:three_prime_UTR 20.0%
!! CTTATTATACTTAGAATCTA+AGG - chr1_4:1405416-1405435 None:intergenic 20.0%
!!! TAATAAGTTGCTTAGAATTT+TGG + chr1_4:1405429-1405448 Msa0142470:three_prime_UTR 20.0%
!! GATTTGTATATTTACACTTT+AGG + chr1_4:1405545-1405564 Msa0142470:three_prime_UTR 20.0%
!! GTTAGAGGATAAAAAAAAAA+AGG - chr1_4:1405617-1405636 None:intergenic 20.0%
!!! GATTAAATATGTGATTTGTA+TGG + chr1_4:1405693-1405712 Msa0142470:three_prime_UTR 20.0%
!! TAATAATCTATAGTCTATTG+GGG + chr1_4:1402302-1402321 Msa0142470:intron 20.0%
!!! GTTTTGTTTATGATGAAATT+TGG + chr1_4:1402721-1402740 Msa0142470:CDS 20.0%
!! TTGAAAAATATCATTTGGAA+GGG - chr1_4:1403411-1403430 None:intergenic 20.0%
!! TTTGAAAAATATCATTTGGA+AGG - chr1_4:1403412-1403431 None:intergenic 20.0%
!!! TAAAGTAATTTTCATTGACA+GGG - chr1_4:1403877-1403896 None:intergenic 20.0%
!!! ATAAAGTAATTTTCATTGAC+AGG - chr1_4:1403878-1403897 None:intergenic 20.0%
!! AATGAAAATTACTTTATCAG+TGG + chr1_4:1403881-1403900 Msa0142470:CDS 20.0%
!!! ATCAGATTTCTAATGATTTT+AGG + chr1_4:1404256-1404275 Msa0142470:intron 20.0%
!!! AAGCATTTTAATTTGTATTC+CGG + chr1_4:1404386-1404405 Msa0142470:intron 20.0%
!! AACAATTGAAGTACAAAATA+AGG - chr1_4:1404427-1404446 None:intergenic 20.0%
!! TTCTTCGAAAAAAATGAAAT+CGG + chr1_4:1404900-1404919 Msa0142470:CDS 20.0%
!! AAAATTGAAAACAATCAACA+TGG - chr1_4:1405346-1405365 None:intergenic 20.0%
!!! CAATTTTTCATGAAAAGTTT+TGG + chr1_4:1405359-1405378 Msa0142470:three_prime_UTR 20.0%
!! CTTATTATACTTAGAATCTA+AGG - chr1_4:1405416-1405435 None:intergenic 20.0%
!!! TAATAAGTTGCTTAGAATTT+TGG + chr1_4:1405429-1405448 Msa0142470:three_prime_UTR 20.0%
!! GATTTGTATATTTACACTTT+AGG + chr1_4:1405545-1405564 Msa0142470:three_prime_UTR 20.0%
!! GTTAGAGGATAAAAAAAAAA+AGG - chr1_4:1405617-1405636 None:intergenic 20.0%
!!! GATTAAATATGTGATTTGTA+TGG + chr1_4:1405693-1405712 Msa0142470:three_prime_UTR 20.0%
!! TTGAAATAAGAGAGAGTATA+TGG - chr1_4:1401986-1402005 None:intergenic 25.0%
!! TAAAATTCCTCTCTAGAAAA+AGG + chr1_4:1402050-1402069 Msa0142470:five_prime_UTR 25.0%
! ATTATTCTATTAGTGTTGTG+AGG + chr1_4:1402340-1402359 Msa0142470:intron 25.0%
! TGCAAATAAATCATTGTCAA+TGG + chr1_4:1402371-1402390 Msa0142470:intron 25.0%
!! ACTAGATTTTGTTGCATAAT+TGG + chr1_4:1402456-1402475 Msa0142470:intron 25.0%
!!! AGATATTTGGTCTTTTGATT+TGG + chr1_4:1402485-1402504 Msa0142470:five_prime_UTR 25.0%
! GATTTGGATTTACAATTTCA+AGG + chr1_4:1402501-1402520 Msa0142470:five_prime_UTR 25.0%
! TATAAAACAGATTGCAACAT+TGG - chr1_4:1403528-1403547 None:intergenic 25.0%
! TAACTAACTAAACATAGTTG+TGG - chr1_4:1403741-1403760 None:intergenic 25.0%
! AATGTTATGAACAAAGCATA+TGG - chr1_4:1403775-1403794 None:intergenic 25.0%
! CAAAAAATCGTGAAAATCAT+TGG - chr1_4:1404037-1404056 None:intergenic 25.0%
! TAATAGATTCATCAATCTCA+TGG - chr1_4:1404096-1404115 None:intergenic 25.0%
!! TATTACATTTTACATGTGCA+GGG + chr1_4:1404111-1404130 Msa0142470:intron 25.0%
!!! AAGGTTTTTTTCTTTCTTTC+CGG - chr1_4:1404408-1404427 None:intergenic 25.0%
! CTAAACAAGGTTTAAATTTG+TGG - chr1_4:1404603-1404622 None:intergenic 25.0%
!!! ATGTTTCTATTGATAGTGTT+TGG + chr1_4:1404714-1404733 Msa0142470:intron 25.0%
! AAGGAATATATCAGAAACAT+GGG + chr1_4:1405236-1405255 Msa0142470:CDS 25.0%
! AAGTGTAAATATACAAATCC+TGG - chr1_4:1405544-1405563 None:intergenic 25.0%
! AAAAAAAAGGATTCTTTGCA+TGG - chr1_4:1405604-1405623 None:intergenic 25.0%
! ATCAACTAACAAAATGTTAG+AGG - chr1_4:1405632-1405651 None:intergenic 25.0%
!! TGTTAGTTGATTTATATACC+AGG + chr1_4:1405641-1405660 Msa0142470:three_prime_UTR 25.0%
! AGAGTAAGTGGTTAATTAAT+TGG - chr1_4:1405730-1405749 None:intergenic 25.0%
!! TTGAAATAAGAGAGAGTATA+TGG - chr1_4:1401986-1402005 None:intergenic 25.0%
!! TAAAATTCCTCTCTAGAAAA+AGG + chr1_4:1402050-1402069 Msa0142470:five_prime_UTR 25.0%
! ATTATTCTATTAGTGTTGTG+AGG + chr1_4:1402340-1402359 Msa0142470:intron 25.0%
! TGCAAATAAATCATTGTCAA+TGG + chr1_4:1402371-1402390 Msa0142470:intron 25.0%
!! ACTAGATTTTGTTGCATAAT+TGG + chr1_4:1402456-1402475 Msa0142470:intron 25.0%
!!! AGATATTTGGTCTTTTGATT+TGG + chr1_4:1402485-1402504 Msa0142470:five_prime_UTR 25.0%
! GATTTGGATTTACAATTTCA+AGG + chr1_4:1402501-1402520 Msa0142470:five_prime_UTR 25.0%
! TATAAAACAGATTGCAACAT+TGG - chr1_4:1403528-1403547 None:intergenic 25.0%
! TAACTAACTAAACATAGTTG+TGG - chr1_4:1403741-1403760 None:intergenic 25.0%
! AATGTTATGAACAAAGCATA+TGG - chr1_4:1403775-1403794 None:intergenic 25.0%
! CAAAAAATCGTGAAAATCAT+TGG - chr1_4:1404037-1404056 None:intergenic 25.0%
! TAATAGATTCATCAATCTCA+TGG - chr1_4:1404096-1404115 None:intergenic 25.0%
!! TATTACATTTTACATGTGCA+GGG + chr1_4:1404111-1404130 Msa0142470:intron 25.0%
!!! AAGGTTTTTTTCTTTCTTTC+CGG - chr1_4:1404408-1404427 None:intergenic 25.0%
! CTAAACAAGGTTTAAATTTG+TGG - chr1_4:1404603-1404622 None:intergenic 25.0%
!!! ATGTTTCTATTGATAGTGTT+TGG + chr1_4:1404714-1404733 Msa0142470:intron 25.0%
! AAGGAATATATCAGAAACAT+GGG + chr1_4:1405236-1405255 Msa0142470:CDS 25.0%
! AAGTGTAAATATACAAATCC+TGG - chr1_4:1405544-1405563 None:intergenic 25.0%
! AAAAAAAAGGATTCTTTGCA+TGG - chr1_4:1405604-1405623 None:intergenic 25.0%
! ATCAACTAACAAAATGTTAG+AGG - chr1_4:1405632-1405651 None:intergenic 25.0%
!! TGTTAGTTGATTTATATACC+AGG + chr1_4:1405641-1405660 Msa0142470:three_prime_UTR 25.0%
! AGAGTAAGTGGTTAATTAAT+TGG - chr1_4:1405730-1405749 None:intergenic 25.0%
ACTCTACTACACTATTAGTT+AGG - chr1_4:1401818-1401837 None:intergenic 30.0%
TAATAGTGTAGTAGAGTAAC+TGG + chr1_4:1401821-1401840 Msa0142470:five_prime_UTR 30.0%
! CTGTTTTGTAGGAATAGAAA+AGG - chr1_4:1401880-1401899 None:intergenic 30.0%
! AAAAGGAAACCGTTTCTTTT+TGG + chr1_4:1402067-1402086 Msa0142470:five_prime_UTR 30.0%
! CATGCTTTTGAATTCAAAAG+TGG - chr1_4:1402232-1402251 None:intergenic 30.0%
! CACTTTTGAATTCAAAAGCA+TGG + chr1_4:1402230-1402249 Msa0142470:intron 30.0%
CCATATACTTAACATGAGAA+AGG - chr1_4:1402410-1402429 None:intergenic 30.0%
CCTTTCTCATGTTAAGTATA+TGG + chr1_4:1402407-1402426 Msa0142470:intron 30.0%
TAATTGGTGAGAGAGATATT+TGG + chr1_4:1402472-1402491 Msa0142470:five_prime_UTR 30.0%
TGATCTATTCTATGACTCAT+TGG + chr1_4:1402635-1402654 Msa0142470:CDS 30.0%
TATTAGTGTGAAGGAAAGAA+GGG + chr1_4:1402755-1402774 Msa0142470:CDS 30.0%
TCTTGTTGGAAGATCTTAAA+AGG + chr1_4:1402991-1403010 Msa0142470:CDS 30.0%
! TGAGGCAAAAGAAGAATTTT+GGG + chr1_4:1403067-1403086 Msa0142470:CDS 30.0%
!!! GAATTTTGGGATTTCGATAA+TGG + chr1_4:1403080-1403099 Msa0142470:CDS 30.0%
! TCGATAATGGTAAAGCTAAT+AGG + chr1_4:1403093-1403112 Msa0142470:CDS 30.0%
GTAAAGCTAATAGGAAAAAC+TGG + chr1_4:1403102-1403121 Msa0142470:CDS 30.0%
AGGTAAAGCAGAATAAAAAG+AGG + chr1_4:1403213-1403232 Msa0142470:CDS 30.0%
TAAAGCAGAATAAAAAGAGG+TGG + chr1_4:1403216-1403235 Msa0142470:CDS 30.0%
AACATAGTTGTGGAAAATAC+AGG - chr1_4:1403731-1403750 None:intergenic 30.0%
CTGTATCCAATTATAGAAGA+GGG - chr1_4:1403835-1403854 None:intergenic 30.0%
ACTGTATCCAATTATAGAAG+AGG - chr1_4:1403836-1403855 None:intergenic 30.0%
TATTCGAACTTTACCATCAA+TGG - chr1_4:1403909-1403928 None:intergenic 30.0%
! TTGATGGTAAAGTTCGAATA+TGG + chr1_4:1403909-1403928 Msa0142470:CDS 30.0%
TGATGGTAAAGTTCGAATAT+GGG + chr1_4:1403910-1403929 Msa0142470:CDS 30.0%
GCTATAAGTTATCAACAAGA+TGG + chr1_4:1403986-1404005 Msa0142470:CDS 30.0%
ACTTTGACAAAGAAATCTTG+CGG + chr1_4:1404070-1404089 Msa0142470:intron 30.0%
! CTATTACATTTTACATGTGC+AGG + chr1_4:1404110-1404129 Msa0142470:intron 30.0%
TACCTGAAGCAACATAAAAA+CGG - chr1_4:1404167-1404186 None:intergenic 30.0%
! TAATTCTCTGACAGTTGTTT+TGG - chr1_4:1404483-1404502 None:intergenic 30.0%
AGATTCCAAAATCTGCATAT+TGG + chr1_4:1404516-1404535 Msa0142470:CDS 30.0%
GAGATTGTTCAGAAATACAA+AGG + chr1_4:1404547-1404566 Msa0142470:CDS 30.0%
! TACAAAGGTACAACACTTAA+TGG + chr1_4:1404562-1404581 Msa0142470:intron 30.0%
!! CCTAAACAAAGTTCTAAACA+AGG - chr1_4:1404616-1404635 None:intergenic 30.0%
! CCTTGTTTAGAACTTTGTTT+AGG + chr1_4:1404613-1404632 Msa0142470:intron 30.0%
AACTTCAATGACTTCAAAAG+TGG + chr1_4:1404877-1404896 Msa0142470:CDS 30.0%
! TAACTTTTCTCACTATTCTC+TGG + chr1_4:1405011-1405030 Msa0142470:CDS 30.0%
!! AACGATTTTCTCTTGGTAAT+TGG + chr1_4:1405079-1405098 Msa0142470:CDS 30.0%
GAAGGAATATATCAGAAACA+TGG + chr1_4:1405235-1405254 Msa0142470:CDS 30.0%
AGGAATATATCAGAAACATG+GGG + chr1_4:1405237-1405256 Msa0142470:CDS 30.0%
! ATCAAGACATTCCACAATTT+TGG + chr1_4:1405294-1405313 Msa0142470:CDS 30.0%
!!! TTTCATGAAAAGTTTTGGCT+CGG + chr1_4:1405364-1405383 Msa0142470:three_prime_UTR 30.0%
!! TAAAGGTGTAAATTTTCACG+TGG + chr1_4:1405387-1405406 Msa0142470:three_prime_UTR 30.0%
! AAGTTGCTTAGAATTTTGGA+AGG + chr1_4:1405433-1405452 Msa0142470:three_prime_UTR 30.0%
AATCATTGTCAAATCCATGA+TGG + chr1_4:1405497-1405516 Msa0142470:three_prime_UTR 30.0%
ACTCTACTACACTATTAGTT+AGG - chr1_4:1401818-1401837 None:intergenic 30.0%
TAATAGTGTAGTAGAGTAAC+TGG + chr1_4:1401821-1401840 Msa0142470:five_prime_UTR 30.0%
! CTGTTTTGTAGGAATAGAAA+AGG - chr1_4:1401880-1401899 None:intergenic 30.0%
! AAAAGGAAACCGTTTCTTTT+TGG + chr1_4:1402067-1402086 Msa0142470:five_prime_UTR 30.0%
! CATGCTTTTGAATTCAAAAG+TGG - chr1_4:1402232-1402251 None:intergenic 30.0%
! CACTTTTGAATTCAAAAGCA+TGG + chr1_4:1402230-1402249 Msa0142470:intron 30.0%
CCATATACTTAACATGAGAA+AGG - chr1_4:1402410-1402429 None:intergenic 30.0%
CCTTTCTCATGTTAAGTATA+TGG + chr1_4:1402407-1402426 Msa0142470:intron 30.0%
TAATTGGTGAGAGAGATATT+TGG + chr1_4:1402472-1402491 Msa0142470:five_prime_UTR 30.0%
TGATCTATTCTATGACTCAT+TGG + chr1_4:1402635-1402654 Msa0142470:CDS 30.0%
TATTAGTGTGAAGGAAAGAA+GGG + chr1_4:1402755-1402774 Msa0142470:CDS 30.0%
TCTTGTTGGAAGATCTTAAA+AGG + chr1_4:1402991-1403010 Msa0142470:CDS 30.0%
! TGAGGCAAAAGAAGAATTTT+GGG + chr1_4:1403067-1403086 Msa0142470:CDS 30.0%
!!! GAATTTTGGGATTTCGATAA+TGG + chr1_4:1403080-1403099 Msa0142470:CDS 30.0%
! TCGATAATGGTAAAGCTAAT+AGG + chr1_4:1403093-1403112 Msa0142470:CDS 30.0%
GTAAAGCTAATAGGAAAAAC+TGG + chr1_4:1403102-1403121 Msa0142470:CDS 30.0%
AGGTAAAGCAGAATAAAAAG+AGG + chr1_4:1403213-1403232 Msa0142470:CDS 30.0%
TAAAGCAGAATAAAAAGAGG+TGG + chr1_4:1403216-1403235 Msa0142470:CDS 30.0%
AACATAGTTGTGGAAAATAC+AGG - chr1_4:1403731-1403750 None:intergenic 30.0%
CTGTATCCAATTATAGAAGA+GGG - chr1_4:1403835-1403854 None:intergenic 30.0%
ACTGTATCCAATTATAGAAG+AGG - chr1_4:1403836-1403855 None:intergenic 30.0%
TATTCGAACTTTACCATCAA+TGG - chr1_4:1403909-1403928 None:intergenic 30.0%
! TTGATGGTAAAGTTCGAATA+TGG + chr1_4:1403909-1403928 Msa0142470:CDS 30.0%
TGATGGTAAAGTTCGAATAT+GGG + chr1_4:1403910-1403929 Msa0142470:CDS 30.0%
GCTATAAGTTATCAACAAGA+TGG + chr1_4:1403986-1404005 Msa0142470:CDS 30.0%
ACTTTGACAAAGAAATCTTG+CGG + chr1_4:1404070-1404089 Msa0142470:intron 30.0%
! CTATTACATTTTACATGTGC+AGG + chr1_4:1404110-1404129 Msa0142470:intron 30.0%
TACCTGAAGCAACATAAAAA+CGG - chr1_4:1404167-1404186 None:intergenic 30.0%
! TAATTCTCTGACAGTTGTTT+TGG - chr1_4:1404483-1404502 None:intergenic 30.0%
AGATTCCAAAATCTGCATAT+TGG + chr1_4:1404516-1404535 Msa0142470:CDS 30.0%
GAGATTGTTCAGAAATACAA+AGG + chr1_4:1404547-1404566 Msa0142470:CDS 30.0%
! TACAAAGGTACAACACTTAA+TGG + chr1_4:1404562-1404581 Msa0142470:intron 30.0%
!! CCTAAACAAAGTTCTAAACA+AGG - chr1_4:1404616-1404635 None:intergenic 30.0%
! CCTTGTTTAGAACTTTGTTT+AGG + chr1_4:1404613-1404632 Msa0142470:intron 30.0%
AACTTCAATGACTTCAAAAG+TGG + chr1_4:1404877-1404896 Msa0142470:CDS 30.0%
! TAACTTTTCTCACTATTCTC+TGG + chr1_4:1405011-1405030 Msa0142470:CDS 30.0%
!! AACGATTTTCTCTTGGTAAT+TGG + chr1_4:1405079-1405098 Msa0142470:CDS 30.0%
GAAGGAATATATCAGAAACA+TGG + chr1_4:1405235-1405254 Msa0142470:CDS 30.0%
AGGAATATATCAGAAACATG+GGG + chr1_4:1405237-1405256 Msa0142470:CDS 30.0%
! ATCAAGACATTCCACAATTT+TGG + chr1_4:1405294-1405313 Msa0142470:CDS 30.0%
!!! TTTCATGAAAAGTTTTGGCT+CGG + chr1_4:1405364-1405383 Msa0142470:three_prime_UTR 30.0%
!! TAAAGGTGTAAATTTTCACG+TGG + chr1_4:1405387-1405406 Msa0142470:three_prime_UTR 30.0%
! AAGTTGCTTAGAATTTTGGA+AGG + chr1_4:1405433-1405452 Msa0142470:three_prime_UTR 30.0%
AATCATTGTCAAATCCATGA+TGG + chr1_4:1405497-1405516 Msa0142470:three_prime_UTR 30.0%
TCTTTACTCTATGGTCTGTT+AGG - chr1_4:1401678-1401697 None:intergenic 35.0%
AGCGATAACTCTTTACTCTA+TGG - chr1_4:1401687-1401706 None:intergenic 35.0%
GCATATTCATTCATGGCTTA+AGG - chr1_4:1401718-1401737 None:intergenic 35.0%
GAGCTATGCATATTCATTCA+TGG - chr1_4:1401725-1401744 None:intergenic 35.0%
!!! GTTTTGATGAGAAGCATTGA+TGG - chr1_4:1401782-1401801 None:intergenic 35.0%
TTGTAGGAATAGAAAAGGCA+AGG - chr1_4:1401875-1401894 None:intergenic 35.0%
! GCTTGGTAACCAAAAAGAAA+CGG - chr1_4:1402079-1402098 None:intergenic 35.0%
AATCTATAGTCTATTGGGGT+TGG + chr1_4:1402306-1402325 Msa0142470:intron 35.0%
!! TGAAAAGTAGTGGATTGAAG+TGG + chr1_4:1402527-1402546 Msa0142470:five_prime_UTR 35.0%
! GACTCATTGGATATTTTGTC+TGG + chr1_4:1402648-1402667 Msa0142470:CDS 35.0%
!!! ATTCTGTTTTAGCCGAAGAA+GGG + chr1_4:1402676-1402695 Msa0142470:CDS 35.0%
CTTCTTTCCTTCACACTAAT+AGG - chr1_4:1402756-1402775 None:intergenic 35.0%
CTATTAGTGTGAAGGAAAGA+AGG + chr1_4:1402754-1402773 Msa0142470:CDS 35.0%
! ATTTAGCTTACACTTCTTCC+AGG + chr1_4:1402799-1402818 Msa0142470:CDS 35.0%
! TTTAGCTTACACTTCTTCCA+GGG + chr1_4:1402800-1402819 Msa0142470:CDS 35.0%
!! AAACAACGAGTTTTGATGAC+TGG + chr1_4:1402838-1402857 Msa0142470:CDS 35.0%
TGTTGGAAGATCTTAAAAGG+CGG + chr1_4:1402994-1403013 Msa0142470:CDS 35.0%
! GTGAGGCAAAAGAAGAATTT+TGG + chr1_4:1403066-1403085 Msa0142470:CDS 35.0%
GAATAAAACTCGTAGAGTGA+AGG + chr1_4:1403193-1403212 Msa0142470:CDS 35.0%
CAAGAAATTAGAGCTCACAA+AGG + chr1_4:1403266-1403285 Msa0142470:CDS 35.0%
ACTATGAAATTCAGTCCCAA+TGG + chr1_4:1403299-1403318 Msa0142470:CDS 35.0%
TCATTTGGAAGGGAAACAAA+GGG - chr1_4:1403401-1403420 None:intergenic 35.0%
ATCATTTGGAAGGGAAACAA+AGG - chr1_4:1403402-1403421 None:intergenic 35.0%
TGACCAAACAATTCTTGAAG+TGG - chr1_4:1403446-1403465 None:intergenic 35.0%
TTCCAGTGATATCTTGGATT+TGG + chr1_4:1403466-1403485 Msa0142470:CDS 35.0%
ATGTTCAATGTCTAAGAGCA+TGG - chr1_4:1403799-1403818 None:intergenic 35.0%
ATTGTGCCCTCTTCTATAAT+TGG + chr1_4:1403826-1403845 Msa0142470:intron 35.0%
TTTATCAGTGGATCCATTGA+TGG + chr1_4:1403893-1403912 Msa0142470:CDS 35.0%
GATGGTAAAGTTCGAATATG+GGG + chr1_4:1403911-1403930 Msa0142470:CDS 35.0%
! TGAAGAACGAGTTATTGACT+GGG + chr1_4:1403940-1403959 Msa0142470:CDS 35.0%
! TTATTGACTGGGCAGATATA+CGG + chr1_4:1403951-1403970 Msa0142470:CDS 35.0%
! TTTGTAGTTGGTTCTCTTAC+AGG + chr1_4:1404135-1404154 Msa0142470:CDS 35.0%
AGGAAAATATTTCCAGCTTG+AGG + chr1_4:1404276-1404295 Msa0142470:intron 35.0%
CTAATGCTTTCTTCTTTCCA+TGG - chr1_4:1404315-1404334 None:intergenic 35.0%
!! CATGGAAAGAAGAAAGCATT+AGG + chr1_4:1404313-1404332 Msa0142470:CDS 35.0%
! TCGATCCAATATGCAGATTT+TGG - chr1_4:1404524-1404543 None:intergenic 35.0%
ACTTAATGGTTGTCACAATC+TGG + chr1_4:1404576-1404595 Msa0142470:intron 35.0%
GGGAAACATATCATTTCAGT+TGG + chr1_4:1404829-1404848 Msa0142470:CDS 35.0%
ACATATCATTTCAGTTGGAG+AGG + chr1_4:1404834-1404853 Msa0142470:CDS 35.0%
! TTGTGAGTACTTTTCCTTCA+AGG + chr1_4:1404930-1404949 Msa0142470:CDS 35.0%
! TGTGAGTACTTTTCCTTCAA+GGG + chr1_4:1404931-1404950 Msa0142470:CDS 35.0%
! GATACAGAACGATTTTCTCT+TGG + chr1_4:1405072-1405091 Msa0142470:CDS 35.0%
! GGTAATTGGTTCTTCATTGA+TGG + chr1_4:1405093-1405112 Msa0142470:CDS 35.0%
TCACATTCATCTTCTACAAG+AGG - chr1_4:1405180-1405199 None:intergenic 35.0%
!! TTGCTTAGAATTTTGGAAGG+TGG + chr1_4:1405436-1405455 Msa0142470:three_prime_UTR 35.0%
TCAAGTTCTTGACAAATTCC+AGG + chr1_4:1405523-1405542 Msa0142470:three_prime_UTR 35.0%
! TGCACTTTTCATTATGTACC+TGG - chr1_4:1405662-1405681 None:intergenic 35.0%
TCTTTACTCTATGGTCTGTT+AGG - chr1_4:1401678-1401697 None:intergenic 35.0%
AGCGATAACTCTTTACTCTA+TGG - chr1_4:1401687-1401706 None:intergenic 35.0%
GCATATTCATTCATGGCTTA+AGG - chr1_4:1401718-1401737 None:intergenic 35.0%
GAGCTATGCATATTCATTCA+TGG - chr1_4:1401725-1401744 None:intergenic 35.0%
!!! GTTTTGATGAGAAGCATTGA+TGG - chr1_4:1401782-1401801 None:intergenic 35.0%
TTGTAGGAATAGAAAAGGCA+AGG - chr1_4:1401875-1401894 None:intergenic 35.0%
! GCTTGGTAACCAAAAAGAAA+CGG - chr1_4:1402079-1402098 None:intergenic 35.0%
AATCTATAGTCTATTGGGGT+TGG + chr1_4:1402306-1402325 Msa0142470:intron 35.0%
!! TGAAAAGTAGTGGATTGAAG+TGG + chr1_4:1402527-1402546 Msa0142470:five_prime_UTR 35.0%
! GACTCATTGGATATTTTGTC+TGG + chr1_4:1402648-1402667 Msa0142470:CDS 35.0%
!!! ATTCTGTTTTAGCCGAAGAA+GGG + chr1_4:1402676-1402695 Msa0142470:CDS 35.0%
CTTCTTTCCTTCACACTAAT+AGG - chr1_4:1402756-1402775 None:intergenic 35.0%
CTATTAGTGTGAAGGAAAGA+AGG + chr1_4:1402754-1402773 Msa0142470:CDS 35.0%
! ATTTAGCTTACACTTCTTCC+AGG + chr1_4:1402799-1402818 Msa0142470:CDS 35.0%
! TTTAGCTTACACTTCTTCCA+GGG + chr1_4:1402800-1402819 Msa0142470:CDS 35.0%
!! AAACAACGAGTTTTGATGAC+TGG + chr1_4:1402838-1402857 Msa0142470:CDS 35.0%
TGTTGGAAGATCTTAAAAGG+CGG + chr1_4:1402994-1403013 Msa0142470:CDS 35.0%
! GTGAGGCAAAAGAAGAATTT+TGG + chr1_4:1403066-1403085 Msa0142470:CDS 35.0%
GAATAAAACTCGTAGAGTGA+AGG + chr1_4:1403193-1403212 Msa0142470:CDS 35.0%
CAAGAAATTAGAGCTCACAA+AGG + chr1_4:1403266-1403285 Msa0142470:CDS 35.0%
ACTATGAAATTCAGTCCCAA+TGG + chr1_4:1403299-1403318 Msa0142470:CDS 35.0%
TCATTTGGAAGGGAAACAAA+GGG - chr1_4:1403401-1403420 None:intergenic 35.0%
ATCATTTGGAAGGGAAACAA+AGG - chr1_4:1403402-1403421 None:intergenic 35.0%
TGACCAAACAATTCTTGAAG+TGG - chr1_4:1403446-1403465 None:intergenic 35.0%
TTCCAGTGATATCTTGGATT+TGG + chr1_4:1403466-1403485 Msa0142470:CDS 35.0%
ATGTTCAATGTCTAAGAGCA+TGG - chr1_4:1403799-1403818 None:intergenic 35.0%
ATTGTGCCCTCTTCTATAAT+TGG + chr1_4:1403826-1403845 Msa0142470:intron 35.0%
TTTATCAGTGGATCCATTGA+TGG + chr1_4:1403893-1403912 Msa0142470:CDS 35.0%
GATGGTAAAGTTCGAATATG+GGG + chr1_4:1403911-1403930 Msa0142470:CDS 35.0%
! TGAAGAACGAGTTATTGACT+GGG + chr1_4:1403940-1403959 Msa0142470:CDS 35.0%
! TTATTGACTGGGCAGATATA+CGG + chr1_4:1403951-1403970 Msa0142470:CDS 35.0%
! TTTGTAGTTGGTTCTCTTAC+AGG + chr1_4:1404135-1404154 Msa0142470:CDS 35.0%
AGGAAAATATTTCCAGCTTG+AGG + chr1_4:1404276-1404295 Msa0142470:intron 35.0%
CTAATGCTTTCTTCTTTCCA+TGG - chr1_4:1404315-1404334 None:intergenic 35.0%
!! CATGGAAAGAAGAAAGCATT+AGG + chr1_4:1404313-1404332 Msa0142470:CDS 35.0%
! TCGATCCAATATGCAGATTT+TGG - chr1_4:1404524-1404543 None:intergenic 35.0%
ACTTAATGGTTGTCACAATC+TGG + chr1_4:1404576-1404595 Msa0142470:intron 35.0%
GGGAAACATATCATTTCAGT+TGG + chr1_4:1404829-1404848 Msa0142470:CDS 35.0%
ACATATCATTTCAGTTGGAG+AGG + chr1_4:1404834-1404853 Msa0142470:CDS 35.0%
! TTGTGAGTACTTTTCCTTCA+AGG + chr1_4:1404930-1404949 Msa0142470:CDS 35.0%
! TGTGAGTACTTTTCCTTCAA+GGG + chr1_4:1404931-1404950 Msa0142470:CDS 35.0%
! GATACAGAACGATTTTCTCT+TGG + chr1_4:1405072-1405091 Msa0142470:CDS 35.0%
! GGTAATTGGTTCTTCATTGA+TGG + chr1_4:1405093-1405112 Msa0142470:CDS 35.0%
TCACATTCATCTTCTACAAG+AGG - chr1_4:1405180-1405199 None:intergenic 35.0%
!! TTGCTTAGAATTTTGGAAGG+TGG + chr1_4:1405436-1405455 Msa0142470:three_prime_UTR 35.0%
TCAAGTTCTTGACAAATTCC+AGG + chr1_4:1405523-1405542 Msa0142470:three_prime_UTR 35.0%
! TGCACTTTTCATTATGTACC+TGG - chr1_4:1405662-1405681 None:intergenic 35.0%
TTACTCTATGGTCTGTTAGG+TGG - chr1_4:1401675-1401694 None:intergenic 40.0%
!! TGAGAAGCATTGATGGCTAA+TGG - chr1_4:1401775-1401794 None:intergenic 40.0%
!!! GCTAGTTAGTGCTGTTTTGT+AGG - chr1_4:1401891-1401910 None:intergenic 40.0%
!! ACGGTTTCCTTTTTCTAGAG+AGG - chr1_4:1402060-1402079 None:intergenic 40.0%
TGTTTACCTCTGCATATGCT+TGG - chr1_4:1402096-1402115 None:intergenic 40.0%
TTGACAGTGACATGTATTCC+TGG + chr1_4:1402190-1402209 Msa0142470:intron 40.0%
GGAGACTATACTACTATTCC+AGG - chr1_4:1402211-1402230 None:intergenic 40.0%
!! TTCAAGGCGTTGAAAAGTAG+TGG + chr1_4:1402517-1402536 Msa0142470:five_prime_UTR 40.0%
!! AGTGGATTGAAGTGGTAAAG+TGG + chr1_4:1402535-1402554 Msa0142470:five_prime_UTR 40.0%
! GTGGATTGAAGTGGTAAAGT+GGG + chr1_4:1402536-1402555 Msa0142470:five_prime_UTR 40.0%
! GGTAAAGTGGGATTTTCATG+TGG + chr1_4:1402548-1402567 Msa0142470:five_prime_UTR 40.0%
! AAGTGGGATTTTCATGTGGA+AGG + chr1_4:1402552-1402571 Msa0142470:five_prime_UTR 40.0%
! AGCTGTGATGATGATGATGA+TGG + chr1_4:1402606-1402625 Msa0142470:CDS 40.0%
!!! GATTCTGTTTTAGCCGAAGA+AGG + chr1_4:1402675-1402694 Msa0142470:CDS 40.0%
TTCAGAACCAAACCCTTCTT+CGG - chr1_4:1402691-1402710 None:intergenic 40.0%
!! AAGAAGGGTTTGGTTCTGAA+AGG + chr1_4:1402691-1402710 Msa0142470:CDS 40.0%
GAATGAGCCTATTAGTGTGA+AGG + chr1_4:1402746-1402765 Msa0142470:CDS 40.0%
TTTCTCTTGTGAACAAACCC+TGG - chr1_4:1402820-1402839 None:intergenic 40.0%
!! AACGAGTTTTGATGACTGGT+CGG + chr1_4:1402842-1402861 Msa0142470:CDS 40.0%
AATGCAAGCATTTCACCTTC+TGG + chr1_4:1402912-1402931 Msa0142470:CDS 40.0%
! TCACCTTCTGGTAAAGTATC+TGG + chr1_4:1402924-1402943 Msa0142470:CDS 40.0%
! CACCTTCTGGTAAAGTATCT+GGG + chr1_4:1402925-1402944 Msa0142470:CDS 40.0%
TTCCCAGATACTTTACCAGA+AGG - chr1_4:1402930-1402949 None:intergenic 40.0%
! TGGTAAAGTATCTGGGAAGT+TGG + chr1_4:1402932-1402951 Msa0142470:CDS 40.0%
!! TTCTGAAGCTGAAGTCTTGT+TGG + chr1_4:1402977-1402996 Msa0142470:CDS 40.0%
!! TGAAGCGTTTTGTGAACATC+AGG + chr1_4:1403126-1403145 Msa0142470:CDS 40.0%
! CGTTTTGTGAACATCAGGAA+AGG + chr1_4:1403131-1403150 Msa0142470:CDS 40.0%
GCAGAATAAAAAGAGGTGGA+TGG + chr1_4:1403220-1403239 Msa0142470:CDS 40.0%
GAGTTCAGTGAGGTATACAT+TGG + chr1_4:1403242-1403261 Msa0142470:CDS 40.0%
GAGCTCACAAAGGACTAATA+TGG + chr1_4:1403276-1403295 Msa0142470:CDS 40.0%
CTAGCCAAATACTGACCATT+GGG - chr1_4:1403317-1403336 None:intergenic 40.0%
ACTAGCCAAATACTGACCAT+TGG - chr1_4:1403318-1403337 None:intergenic 40.0%
AATGGTCAGTATTTGGCTAG+TGG + chr1_4:1403317-1403336 Msa0142470:CDS 40.0%
TCGCCACTTCAAGAATTGTT+TGG + chr1_4:1403440-1403459 Msa0142470:CDS 40.0%
TGGTCATTCCAGTGATATCT+TGG + chr1_4:1403460-1403479 Msa0142470:CDS 40.0%
ACTCACATCTGAATTAGACC+AGG - chr1_4:1403492-1403511 None:intergenic 40.0%
GATTCTTCTTTCGTCTTCGA+TGG + chr1_4:1403607-1403626 Msa0142470:intron 40.0%
! CTAAGTGTTTTCCCTCACAA+AGG + chr1_4:1403671-1403690 Msa0142470:CDS 40.0%
ACTTACCAAAGCCTTTGTGA+GGG - chr1_4:1403685-1403704 None:intergenic 40.0%
TACTTACCAAAGCCTTTGTG+AGG - chr1_4:1403686-1403705 None:intergenic 40.0%
GTGAAGAACGAGTTATTGAC+TGG + chr1_4:1403939-1403958 Msa0142470:CDS 40.0%
! TATTGACTGGGCAGATATAC+GGG + chr1_4:1403952-1403971 Msa0142470:CDS 40.0%
!!! TGCCGTTTTTATGTTGCTTC+AGG + chr1_4:1404162-1404181 Msa0142470:CDS 40.0%
TTGCTTCAGGTATGTACATG+TGG + chr1_4:1404175-1404194 Msa0142470:intron 40.0%
CTCATGAATGTAGCAGCAAT+TGG - chr1_4:1404205-1404224 None:intergenic 40.0%
GCATTAGGCAACAAGATTAC+TGG + chr1_4:1404328-1404347 Msa0142470:CDS 40.0%
CAACAAGATTACTGGCATTC+AGG + chr1_4:1404336-1404355 Msa0142470:CDS 40.0%
TGGAAGAACTGCAAACAACA+TGG - chr1_4:1404463-1404482 None:intergenic 40.0%
! GTCAGTTTTCTCGTTCTATC+AGG + chr1_4:1404760-1404779 Msa0142470:intron 40.0%
TCCGGTTCATTTACATCAAG+TGG + chr1_4:1404808-1404827 Msa0142470:CDS 40.0%
CCCACTTGATGTAAATGAAC+CGG - chr1_4:1404812-1404831 None:intergenic 40.0%
CCGGTTCATTTACATCAAGT+GGG + chr1_4:1404809-1404828 Msa0142470:CDS 40.0%
! TTCATTGATGGTACATGTCG+AGG + chr1_4:1405105-1405124 Msa0142470:CDS 40.0%
GAGGTTCTACTTCTATGACA+TGG + chr1_4:1405124-1405143 Msa0142470:CDS 40.0%
TGAGGAGAAACTTCCAACAT+GGG + chr1_4:1405149-1405168 Msa0142470:CDS 40.0%
ACAAGAGGTAAATCCCATGT+TGG - chr1_4:1405165-1405184 None:intergenic 40.0%
TGTCACGAAGATAGTAGCTA+TGG + chr1_4:1405213-1405232 Msa0142470:CDS 40.0%
ACGAAGATAGTAGCTATGGA+AGG + chr1_4:1405217-1405236 Msa0142470:CDS 40.0%
TAACAGGCAAGCCAAAATTG+TGG - chr1_4:1405308-1405327 None:intergenic 40.0%
!!! ACAATTTTGGCTTGCCTGTT+AGG + chr1_4:1405307-1405326 Msa0142470:CDS 40.0%
!!! GAAAAGTTTTGGCTCGGTAA+AGG + chr1_4:1405370-1405389 Msa0142470:three_prime_UTR 40.0%
! AGGTGTAAATTTTCACGTGG+TGG + chr1_4:1405390-1405409 Msa0142470:three_prime_UTR 40.0%
TGGTTATATCATCTGCGTAC+AGG + chr1_4:1405471-1405490 Msa0142470:three_prime_UTR 40.0%
CAAGAACTTGACATCCATCA+TGG - chr1_4:1405514-1405533 None:intergenic 40.0%
GCCTTCAATGTCGTGAATTT+AGG + chr1_4:1405571-1405590 Msa0142470:three_prime_UTR 40.0%
GCCTAAATTCACGACATTGA+AGG - chr1_4:1405575-1405594 None:intergenic 40.0%
TTACTCTATGGTCTGTTAGG+TGG - chr1_4:1401675-1401694 None:intergenic 40.0%
!! TGAGAAGCATTGATGGCTAA+TGG - chr1_4:1401775-1401794 None:intergenic 40.0%
!!! GCTAGTTAGTGCTGTTTTGT+AGG - chr1_4:1401891-1401910 None:intergenic 40.0%
!! ACGGTTTCCTTTTTCTAGAG+AGG - chr1_4:1402060-1402079 None:intergenic 40.0%
TGTTTACCTCTGCATATGCT+TGG - chr1_4:1402096-1402115 None:intergenic 40.0%
TTGACAGTGACATGTATTCC+TGG + chr1_4:1402190-1402209 Msa0142470:intron 40.0%
GGAGACTATACTACTATTCC+AGG - chr1_4:1402211-1402230 None:intergenic 40.0%
!! TTCAAGGCGTTGAAAAGTAG+TGG + chr1_4:1402517-1402536 Msa0142470:five_prime_UTR 40.0%
!! AGTGGATTGAAGTGGTAAAG+TGG + chr1_4:1402535-1402554 Msa0142470:five_prime_UTR 40.0%
! GTGGATTGAAGTGGTAAAGT+GGG + chr1_4:1402536-1402555 Msa0142470:five_prime_UTR 40.0%
! GGTAAAGTGGGATTTTCATG+TGG + chr1_4:1402548-1402567 Msa0142470:five_prime_UTR 40.0%
! AAGTGGGATTTTCATGTGGA+AGG + chr1_4:1402552-1402571 Msa0142470:five_prime_UTR 40.0%
! AGCTGTGATGATGATGATGA+TGG + chr1_4:1402606-1402625 Msa0142470:CDS 40.0%
!!! GATTCTGTTTTAGCCGAAGA+AGG + chr1_4:1402675-1402694 Msa0142470:CDS 40.0%
TTCAGAACCAAACCCTTCTT+CGG - chr1_4:1402691-1402710 None:intergenic 40.0%
!! AAGAAGGGTTTGGTTCTGAA+AGG + chr1_4:1402691-1402710 Msa0142470:CDS 40.0%
GAATGAGCCTATTAGTGTGA+AGG + chr1_4:1402746-1402765 Msa0142470:CDS 40.0%
TTTCTCTTGTGAACAAACCC+TGG - chr1_4:1402820-1402839 None:intergenic 40.0%
!! AACGAGTTTTGATGACTGGT+CGG + chr1_4:1402842-1402861 Msa0142470:CDS 40.0%
AATGCAAGCATTTCACCTTC+TGG + chr1_4:1402912-1402931 Msa0142470:CDS 40.0%
! TCACCTTCTGGTAAAGTATC+TGG + chr1_4:1402924-1402943 Msa0142470:CDS 40.0%
! CACCTTCTGGTAAAGTATCT+GGG + chr1_4:1402925-1402944 Msa0142470:CDS 40.0%
TTCCCAGATACTTTACCAGA+AGG - chr1_4:1402930-1402949 None:intergenic 40.0%
! TGGTAAAGTATCTGGGAAGT+TGG + chr1_4:1402932-1402951 Msa0142470:CDS 40.0%
!! TTCTGAAGCTGAAGTCTTGT+TGG + chr1_4:1402977-1402996 Msa0142470:CDS 40.0%
!! TGAAGCGTTTTGTGAACATC+AGG + chr1_4:1403126-1403145 Msa0142470:CDS 40.0%
! CGTTTTGTGAACATCAGGAA+AGG + chr1_4:1403131-1403150 Msa0142470:CDS 40.0%
GCAGAATAAAAAGAGGTGGA+TGG + chr1_4:1403220-1403239 Msa0142470:CDS 40.0%
GAGTTCAGTGAGGTATACAT+TGG + chr1_4:1403242-1403261 Msa0142470:CDS 40.0%
GAGCTCACAAAGGACTAATA+TGG + chr1_4:1403276-1403295 Msa0142470:CDS 40.0%
CTAGCCAAATACTGACCATT+GGG - chr1_4:1403317-1403336 None:intergenic 40.0%
ACTAGCCAAATACTGACCAT+TGG - chr1_4:1403318-1403337 None:intergenic 40.0%
AATGGTCAGTATTTGGCTAG+TGG + chr1_4:1403317-1403336 Msa0142470:CDS 40.0%
TCGCCACTTCAAGAATTGTT+TGG + chr1_4:1403440-1403459 Msa0142470:CDS 40.0%
TGGTCATTCCAGTGATATCT+TGG + chr1_4:1403460-1403479 Msa0142470:CDS 40.0%
ACTCACATCTGAATTAGACC+AGG - chr1_4:1403492-1403511 None:intergenic 40.0%
GATTCTTCTTTCGTCTTCGA+TGG + chr1_4:1403607-1403626 Msa0142470:intron 40.0%
! CTAAGTGTTTTCCCTCACAA+AGG + chr1_4:1403671-1403690 Msa0142470:CDS 40.0%
ACTTACCAAAGCCTTTGTGA+GGG - chr1_4:1403685-1403704 None:intergenic 40.0%
TACTTACCAAAGCCTTTGTG+AGG - chr1_4:1403686-1403705 None:intergenic 40.0%
GTGAAGAACGAGTTATTGAC+TGG + chr1_4:1403939-1403958 Msa0142470:CDS 40.0%
! TATTGACTGGGCAGATATAC+GGG + chr1_4:1403952-1403971 Msa0142470:CDS 40.0%
!!! TGCCGTTTTTATGTTGCTTC+AGG + chr1_4:1404162-1404181 Msa0142470:CDS 40.0%
TTGCTTCAGGTATGTACATG+TGG + chr1_4:1404175-1404194 Msa0142470:intron 40.0%
CTCATGAATGTAGCAGCAAT+TGG - chr1_4:1404205-1404224 None:intergenic 40.0%
GCATTAGGCAACAAGATTAC+TGG + chr1_4:1404328-1404347 Msa0142470:CDS 40.0%
CAACAAGATTACTGGCATTC+AGG + chr1_4:1404336-1404355 Msa0142470:CDS 40.0%
TGGAAGAACTGCAAACAACA+TGG - chr1_4:1404463-1404482 None:intergenic 40.0%
! GTCAGTTTTCTCGTTCTATC+AGG + chr1_4:1404760-1404779 Msa0142470:intron 40.0%
TCCGGTTCATTTACATCAAG+TGG + chr1_4:1404808-1404827 Msa0142470:CDS 40.0%
CCCACTTGATGTAAATGAAC+CGG - chr1_4:1404812-1404831 None:intergenic 40.0%
CCGGTTCATTTACATCAAGT+GGG + chr1_4:1404809-1404828 Msa0142470:CDS 40.0%
! TTCATTGATGGTACATGTCG+AGG + chr1_4:1405105-1405124 Msa0142470:CDS 40.0%
GAGGTTCTACTTCTATGACA+TGG + chr1_4:1405124-1405143 Msa0142470:CDS 40.0%
TGAGGAGAAACTTCCAACAT+GGG + chr1_4:1405149-1405168 Msa0142470:CDS 40.0%
ACAAGAGGTAAATCCCATGT+TGG - chr1_4:1405165-1405184 None:intergenic 40.0%
TGTCACGAAGATAGTAGCTA+TGG + chr1_4:1405213-1405232 Msa0142470:CDS 40.0%
ACGAAGATAGTAGCTATGGA+AGG + chr1_4:1405217-1405236 Msa0142470:CDS 40.0%
TAACAGGCAAGCCAAAATTG+TGG - chr1_4:1405308-1405327 None:intergenic 40.0%
!!! ACAATTTTGGCTTGCCTGTT+AGG + chr1_4:1405307-1405326 Msa0142470:CDS 40.0%
!!! GAAAAGTTTTGGCTCGGTAA+AGG + chr1_4:1405370-1405389 Msa0142470:three_prime_UTR 40.0%
! AGGTGTAAATTTTCACGTGG+TGG + chr1_4:1405390-1405409 Msa0142470:three_prime_UTR 40.0%
TGGTTATATCATCTGCGTAC+AGG + chr1_4:1405471-1405490 Msa0142470:three_prime_UTR 40.0%
CAAGAACTTGACATCCATCA+TGG - chr1_4:1405514-1405533 None:intergenic 40.0%
GCCTTCAATGTCGTGAATTT+AGG + chr1_4:1405571-1405590 Msa0142470:three_prime_UTR 40.0%
GCCTAAATTCACGACATTGA+AGG - chr1_4:1405575-1405594 None:intergenic 40.0%
ATGGTCTGTTAGGTGGTCAT+AGG - chr1_4:1401668-1401687 None:intergenic 45.0%
TGGTTACCAAGCATATGCAG+AGG + chr1_4:1402087-1402106 Msa0142470:five_prime_UTR 45.0%
CTATAGTCTATTGGGGTTGG+TGG + chr1_4:1402309-1402328 Msa0142470:intron 45.0%
!! GTTTTAGCCGAAGAAGGGTT+TGG + chr1_4:1402681-1402700 Msa0142470:CDS 45.0%
! AAGAAGGGAACGTTTTCTGC+AGG + chr1_4:1402770-1402789 Msa0142470:CDS 45.0%
! AGAAGGGAACGTTTTCTGCA+GGG + chr1_4:1402771-1402790 Msa0142470:CDS 45.0%
AACATCAGGAAAGGCGACAA+AGG + chr1_4:1403140-1403159 Msa0142470:CDS 45.0%
CAGTCCCAATGGTCAGTATT+TGG + chr1_4:1403310-1403329 Msa0142470:CDS 45.0%
TTTGGAAGGGAAACAAAGGG+AGG - chr1_4:1403398-1403417 None:intergenic 45.0%
GGCCAAATCCAAGATATCAC+TGG - chr1_4:1403471-1403490 None:intergenic 45.0%
GTGATATCTTGGATTTGGCC+TGG + chr1_4:1403471-1403490 Msa0142470:CDS 45.0%
TGGATAAAACTGTTCGCGCT+TGG + chr1_4:1403627-1403646 Msa0142470:CDS 45.0%
! GTTTTCCCTCACAAAGGCTT+TGG + chr1_4:1403677-1403696 Msa0142470:CDS 45.0%
CATGTGCAGGGATTTGTAGT+TGG + chr1_4:1404123-1404142 Msa0142470:intron 45.0%
TATTTATCTGCGCCTCAAGC+TGG - chr1_4:1404291-1404310 None:intergenic 45.0%
GAGGCGCAGATAAATATCCA+TGG + chr1_4:1404295-1404314 Msa0142470:CDS 45.0%
GCGTAACTGTTGCAATACCT+TGG + chr1_4:1404953-1404972 Msa0142470:CDS 45.0%
ACTGTTGCAATACCTTGGTG+TGG + chr1_4:1404958-1404977 Msa0142470:CDS 45.0%
! TCTGTTTTCATGCCACACCA+AGG - chr1_4:1404973-1404992 None:intergenic 45.0%
GGCATGAAAACAGATAGACG+TGG + chr1_4:1404979-1404998 Msa0142470:CDS 45.0%
GGAAGCAAAAACCAAGCTAG+AGG + chr1_4:1405032-1405051 Msa0142470:CDS 45.0%
CTCAGAAGTAACCTCTAGCT+TGG - chr1_4:1405046-1405065 None:intergenic 45.0%
CAAGCTAGAGGTTACTTCTG+AGG + chr1_4:1405044-1405063 Msa0142470:CDS 45.0%
TACTTCTATGACATGGCCTG+AGG + chr1_4:1405131-1405150 Msa0142470:CDS 45.0%
CATGTTGGAAGTTTCTCCTC+AGG - chr1_4:1405150-1405169 None:intergenic 45.0%
CTGAGGAGAAACTTCCAACA+TGG + chr1_4:1405148-1405167 Msa0142470:CDS 45.0%
GCATTGTCCTAAAGCCTAAC+AGG - chr1_4:1405324-1405343 None:intergenic 45.0%
! GAAGGTGGATTTGAAGCTTG+TGG + chr1_4:1405451-1405470 Msa0142470:three_prime_UTR 45.0%
ATGTCGTGAATTTAGGCCAC+AGG + chr1_4:1405578-1405597 Msa0142470:three_prime_UTR 45.0%
ATGGTCTGTTAGGTGGTCAT+AGG - chr1_4:1401668-1401687 None:intergenic 45.0%
TGGTTACCAAGCATATGCAG+AGG + chr1_4:1402087-1402106 Msa0142470:five_prime_UTR 45.0%
CTATAGTCTATTGGGGTTGG+TGG + chr1_4:1402309-1402328 Msa0142470:intron 45.0%
!! GTTTTAGCCGAAGAAGGGTT+TGG + chr1_4:1402681-1402700 Msa0142470:CDS 45.0%
! AAGAAGGGAACGTTTTCTGC+AGG + chr1_4:1402770-1402789 Msa0142470:CDS 45.0%
! AGAAGGGAACGTTTTCTGCA+GGG + chr1_4:1402771-1402790 Msa0142470:CDS 45.0%
AACATCAGGAAAGGCGACAA+AGG + chr1_4:1403140-1403159 Msa0142470:CDS 45.0%
CAGTCCCAATGGTCAGTATT+TGG + chr1_4:1403310-1403329 Msa0142470:CDS 45.0%
TTTGGAAGGGAAACAAAGGG+AGG - chr1_4:1403398-1403417 None:intergenic 45.0%
GGCCAAATCCAAGATATCAC+TGG - chr1_4:1403471-1403490 None:intergenic 45.0%
GTGATATCTTGGATTTGGCC+TGG + chr1_4:1403471-1403490 Msa0142470:CDS 45.0%
TGGATAAAACTGTTCGCGCT+TGG + chr1_4:1403627-1403646 Msa0142470:CDS 45.0%
! GTTTTCCCTCACAAAGGCTT+TGG + chr1_4:1403677-1403696 Msa0142470:CDS 45.0%
CATGTGCAGGGATTTGTAGT+TGG + chr1_4:1404123-1404142 Msa0142470:intron 45.0%
TATTTATCTGCGCCTCAAGC+TGG - chr1_4:1404291-1404310 None:intergenic 45.0%
GAGGCGCAGATAAATATCCA+TGG + chr1_4:1404295-1404314 Msa0142470:CDS 45.0%
GCGTAACTGTTGCAATACCT+TGG + chr1_4:1404953-1404972 Msa0142470:CDS 45.0%
ACTGTTGCAATACCTTGGTG+TGG + chr1_4:1404958-1404977 Msa0142470:CDS 45.0%
! TCTGTTTTCATGCCACACCA+AGG - chr1_4:1404973-1404992 None:intergenic 45.0%
GGCATGAAAACAGATAGACG+TGG + chr1_4:1404979-1404998 Msa0142470:CDS 45.0%
GGAAGCAAAAACCAAGCTAG+AGG + chr1_4:1405032-1405051 Msa0142470:CDS 45.0%
CTCAGAAGTAACCTCTAGCT+TGG - chr1_4:1405046-1405065 None:intergenic 45.0%
CAAGCTAGAGGTTACTTCTG+AGG + chr1_4:1405044-1405063 Msa0142470:CDS 45.0%
TACTTCTATGACATGGCCTG+AGG + chr1_4:1405131-1405150 Msa0142470:CDS 45.0%
CATGTTGGAAGTTTCTCCTC+AGG - chr1_4:1405150-1405169 None:intergenic 45.0%
CTGAGGAGAAACTTCCAACA+TGG + chr1_4:1405148-1405167 Msa0142470:CDS 45.0%
GCATTGTCCTAAAGCCTAAC+AGG - chr1_4:1405324-1405343 None:intergenic 45.0%
! GAAGGTGGATTTGAAGCTTG+TGG + chr1_4:1405451-1405470 Msa0142470:three_prime_UTR 45.0%
ATGTCGTGAATTTAGGCCAC+AGG + chr1_4:1405578-1405597 Msa0142470:three_prime_UTR 45.0%
!! GGGTTTGGTTCTGAAAGGAG+AGG + chr1_4:1402696-1402715 Msa0142470:CDS 50.0%
! GGAACGTTTTCTGCAGGGTA+TGG + chr1_4:1402776-1402795 Msa0142470:CDS 50.0%
! TGATGACTGGTCGGTCACAT+TGG + chr1_4:1402851-1402870 Msa0142470:CDS 50.0%
! GATGACTGGTCGGTCACATT+GGG + chr1_4:1402852-1402871 Msa0142470:CDS 50.0%
! ATGACTGGTCGGTCACATTG+GGG + chr1_4:1402853-1402872 Msa0142470:CDS 50.0%
! TCTGGGAAGTTGGTTCTCTC+TGG + chr1_4:1402942-1402961 Msa0142470:CDS 50.0%
! GGAAGTTGGTTCTCTCTGGA+TGG + chr1_4:1402946-1402965 Msa0142470:CDS 50.0%
! CAAGAGCACAGACAGAGAGA+AGG + chr1_4:1403044-1403063 Msa0142470:CDS 50.0%
GGTCAGTATTTGGCTAGTGG+AGG + chr1_4:1403320-1403339 Msa0142470:CDS 50.0%
TTGGCTAGTGGAGGTGAAGA+TGG + chr1_4:1403329-1403348 Msa0142470:CDS 50.0%
AAGATGGCGTTGTGCGCATA+TGG + chr1_4:1403345-1403364 Msa0142470:CDS 50.0%
GAAGGGAAACAAAGGGAGGA+CGG - chr1_4:1403394-1403413 None:intergenic 50.0%
TCGTTCTATCAGGCCTTCCA+TGG + chr1_4:1404770-1404789 Msa0142470:intron 50.0%
TCTGACTTCCTGACCATGGA+AGG - chr1_4:1404786-1404805 None:intergenic 50.0%
GACATCTGACTTCCTGACCA+TGG - chr1_4:1404790-1404809 None:intergenic 50.0%
TGGTCAGGAAGTCAGATGTC+CGG + chr1_4:1404790-1404809 Msa0142470:CDS 50.0%
AGGACTCGCGCGTGTATATT+TGG + chr1_4:1404854-1404873 Msa0142470:CDS 50.0%
TGCAACAGTTACGCCCTTGA+AGG - chr1_4:1404947-1404966 None:intergenic 50.0%
GGTCTAACGATAGTAGCAGC+TGG + chr1_4:1405258-1405277 Msa0142470:CDS 50.0%
ATAGTAGCAGCTGGCAGTGA+TGG + chr1_4:1405267-1405286 Msa0142470:CDS 50.0%
! TGGCTTGCCTGTTAGGCTTT+AGG + chr1_4:1405314-1405333 Msa0142470:CDS 50.0%
AGGATTCTTTGCATGGCCTG+TGG - chr1_4:1405597-1405616 None:intergenic 50.0%
!! GGGTTTGGTTCTGAAAGGAG+AGG + chr1_4:1402696-1402715 Msa0142470:CDS 50.0%
! GGAACGTTTTCTGCAGGGTA+TGG + chr1_4:1402776-1402795 Msa0142470:CDS 50.0%
! TGATGACTGGTCGGTCACAT+TGG + chr1_4:1402851-1402870 Msa0142470:CDS 50.0%
! GATGACTGGTCGGTCACATT+GGG + chr1_4:1402852-1402871 Msa0142470:CDS 50.0%
! ATGACTGGTCGGTCACATTG+GGG + chr1_4:1402853-1402872 Msa0142470:CDS 50.0%
! TCTGGGAAGTTGGTTCTCTC+TGG + chr1_4:1402942-1402961 Msa0142470:CDS 50.0%
! GGAAGTTGGTTCTCTCTGGA+TGG + chr1_4:1402946-1402965 Msa0142470:CDS 50.0%
! CAAGAGCACAGACAGAGAGA+AGG + chr1_4:1403044-1403063 Msa0142470:CDS 50.0%
GGTCAGTATTTGGCTAGTGG+AGG + chr1_4:1403320-1403339 Msa0142470:CDS 50.0%
TTGGCTAGTGGAGGTGAAGA+TGG + chr1_4:1403329-1403348 Msa0142470:CDS 50.0%
AAGATGGCGTTGTGCGCATA+TGG + chr1_4:1403345-1403364 Msa0142470:CDS 50.0%
GAAGGGAAACAAAGGGAGGA+CGG - chr1_4:1403394-1403413 None:intergenic 50.0%
TCGTTCTATCAGGCCTTCCA+TGG + chr1_4:1404770-1404789 Msa0142470:intron 50.0%
TCTGACTTCCTGACCATGGA+AGG - chr1_4:1404786-1404805 None:intergenic 50.0%
GACATCTGACTTCCTGACCA+TGG - chr1_4:1404790-1404809 None:intergenic 50.0%
TGGTCAGGAAGTCAGATGTC+CGG + chr1_4:1404790-1404809 Msa0142470:CDS 50.0%
AGGACTCGCGCGTGTATATT+TGG + chr1_4:1404854-1404873 Msa0142470:CDS 50.0%
TGCAACAGTTACGCCCTTGA+AGG - chr1_4:1404947-1404966 None:intergenic 50.0%
GGTCTAACGATAGTAGCAGC+TGG + chr1_4:1405258-1405277 Msa0142470:CDS 50.0%
ATAGTAGCAGCTGGCAGTGA+TGG + chr1_4:1405267-1405286 Msa0142470:CDS 50.0%
! TGGCTTGCCTGTTAGGCTTT+AGG + chr1_4:1405314-1405333 Msa0142470:CDS 50.0%
AGGATTCTTTGCATGGCCTG+TGG - chr1_4:1405597-1405616 None:intergenic 50.0%
AAGGCGGCGTGAGTATGAAG+TGG + chr1_4:1403010-1403029 Msa0142470:CDS 55.0%
GCACAGACAGAGAGAAGGTG+AGG + chr1_4:1403049-1403068 Msa0142470:CDS 55.0%
GAGGTGGATGGAGTTCAGTG+AGG + chr1_4:1403232-1403251 Msa0142470:CDS 55.0%
CTATCAGGCCTTCCATGGTC+AGG + chr1_4:1404775-1404794 Msa0142470:intron 55.0%
AAGGCGGCGTGAGTATGAAG+TGG + chr1_4:1403010-1403029 Msa0142470:CDS 55.0%
GCACAGACAGAGAGAAGGTG+AGG + chr1_4:1403049-1403068 Msa0142470:CDS 55.0%
GAGGTGGATGGAGTTCAGTG+AGG + chr1_4:1403232-1403251 Msa0142470:CDS 55.0%
CTATCAGGCCTTCCATGGTC+AGG + chr1_4:1404775-1404794 Msa0142470:intron 55.0%
CTGGTCGGTCACATTGGGGT+CGG + chr1_4:1402857-1402876 Msa0142470:CDS 60.0%
ATTGGGGTCGGAGAGGATCG+TGG + chr1_4:1402869-1402888 Msa0142470:CDS 60.0%
GAGAGGATCGTGGCAAGCAG+TGG + chr1_4:1402879-1402898 Msa0142470:CDS 60.0%
CTGGTCGGTCACATTGGGGT+CGG + chr1_4:1402857-1402876 Msa0142470:CDS 60.0%
ATTGGGGTCGGAGAGGATCG+TGG + chr1_4:1402869-1402888 Msa0142470:CDS 60.0%
GAGAGGATCGTGGCAAGCAG+TGG + chr1_4:1402879-1402898 Msa0142470:CDS 60.0%
CGGTCACATTGGGGTCGGAG+AGG + chr1_4:1402862-1402881 Msa0142470:CDS 65.0%
CGGTCACATTGGGGTCGGAG+AGG + chr1_4:1402862-1402881 Msa0142470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1401658 1405750 1401658 ID=Msa0142470;Name=Msa0142470
chr1_4 mRNA 1401658 1405750 1401658 ID=Msa0142470-mRNA-1;Parent=Msa0142470;Name=Msa0142470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=389|1|1|1|0.75|0.66|9|415|644
chr1_4 exon 1401658 1401842 1401658 ID=Msa0142470-mRNA-1:exon:488;Parent=Msa0142470-mRNA-1
chr1_4 exon 1402044 1402108 1402044 ID=Msa0142470-mRNA-1:exon:489;Parent=Msa0142470-mRNA-1
chr1_4 exon 1402461 1403505 1402461 ID=Msa0142470-mRNA-1:exon:490;Parent=Msa0142470-mRNA-1
chr1_4 exon 1403608 1403698 1403608 ID=Msa0142470-mRNA-1:exon:491;Parent=Msa0142470-mRNA-1
chr1_4 exon 1403855 1404012 1403855 ID=Msa0142470-mRNA-1:exon:492;Parent=Msa0142470-mRNA-1
chr1_4 exon 1404132 1404183 1404132 ID=Msa0142470-mRNA-1:exon:493;Parent=Msa0142470-mRNA-1
chr1_4 exon 1404278 1404357 1404278 ID=Msa0142470-mRNA-1:exon:494;Parent=Msa0142470-mRNA-1
chr1_4 exon 1404475 1404568 1404475 ID=Msa0142470-mRNA-1:exon:495;Parent=Msa0142470-mRNA-1
chr1_4 exon 1404782 1405750 1404782 ID=Msa0142470-mRNA-1:exon:496;Parent=Msa0142470-mRNA-1
chr1_4 five_prime_UTR 1401658 1401842 1401658 ID=Msa0142470-mRNA-1:five_prime_utr;Parent=Msa0142470-mRNA-1
chr1_4 five_prime_UTR 1402044 1402108 1402044 ID=Msa0142470-mRNA-1:five_prime_utr;Parent=Msa0142470-mRNA-1
chr1_4 five_prime_UTR 1402461 1402599 1402461 ID=Msa0142470-mRNA-1:five_prime_utr;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1402600 1403505 1402600 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1403608 1403698 1403608 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1403855 1404012 1403855 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1404132 1404183 1404132 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1404278 1404357 1404278 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1404475 1404568 1404475 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 CDS 1404782 1405335 1404782 ID=Msa0142470-mRNA-1:cds;Parent=Msa0142470-mRNA-1
chr1_4 three_prime_UTR 1405336 1405750 1405336 ID=Msa0142470-mRNA-1:three_prime_utr;Parent=Msa0142470-mRNA-1
Gene Sequence

>Msa0142470

ATGCTGAGCTGTGATGATGATGATGATGGAGATATTGATCTATTCTATGACTCATTGGATATTTTGTCTGGTGAAGATTCTGTTTTAGCCGAAGAAGGGTTTGGTTCTGAAAGGAGAGGTTGTTTTGTTTATGATGAAATTTGGGTGAATGAGCCTATTAGTGTGAAGGAAAGAAGGGAACGTTTTCTGCAGGGTATGGATTTAGCTTACACTTCTTCCAGGGTTTGTTCACAAGAGAAAACAACGAGTTTTGATGACTGGTCGGTCACATTGGGGTCGGAGAGGATCGTGGCAAGCAGTGGAGCAGTCTCAAATGCAAGCATTTCACCTTCTGGTAAAGTATCTGGGAAGTTGGTTCTCTCTGGATGGAATGCAGCTTCTGAAGCTGAAGTCTTGTTGGAAGATCTTAAAAGGCGGCGTGAGTATGAAGTGGACGCTAGTTTTCAAGAGCACAGACAGAGAGAAGGTGAGGCAAAAGAAGAATTTTGGGATTTCGATAATGGTAAAGCTAATAGGAAAAACTGGTTGAAGCGTTTTGTGAACATCAGGAAAGGCGACAAAGGAAATTTTAGATCAAAACTGAATGCAGCAACGAATAAAACTCGTAGAGTGAAGGTAAAGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGAGGTATACATTGGACAAGAAATTAGAGCTCACAAAGGACTAATATGGACTATGAAATTCAGTCCCAATGGTCAGTATTTGGCTAGTGGAGGTGAAGATGGCGTTGTGCGCATATGGCGCGTTTTGTCACGTGACAAAAGCCGTCCTCCCTTTGTTTCCCTTCCAAATGATATTTTTCAAATTGAGGAATCGCCACTTCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCCTGGTCTAATTCAGATATTCTTCTTTCGTCTTCGATGGATAAAACTGTTCGCGCTTGGAAAATCAGTTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGGCTTTGTGACATGCATTCAATTCAACCCTGTCAATGAAAATTACTTTATCAGTGGATCCATTGATGGTAAAGTTCGAATATGGGGAATACGTGAAGAACGAGTTATTGACTGGGCAGATATACGGGATGTCATAAGTGCTATAAGTTATCAACAAGATGGAAAAGGATTTGTAGTTGGTTCTCTTACAGGCACATGCCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAAATATCCATGGAAAGAAGAAAGCATTAGGCAACAAGATTACTGGCATTCAGTTCTTCCAAAACAACTGTCAGAGAATTATGATCACATCTGAAGATTCCAAAATCTGCATATTGGATCGAACTGAGATTGTTCAGAAATACAAAGGCCTTCCATGGTCAGGAAGTCAGATGTCCGGTTCATTTACATCAAGTGGGAAACATATCATTTCAGTTGGAGAGGACTCGCGCGTGTATATTTGGAACTTCAATGACTTCAAAAGTGGTTCTTCGAAAAAAATGAAATCGGACTATTCTTGTGAGTACTTTTCCTTCAAGGGCGTAACTGTTGCAATACCTTGGTGTGGCATGAAAACAGATAGACGTGGCTGTAGAATTAACTTTTCTCACTATTCTCTGGAAGCAAAAACCAAGCTAGAGGTTACTTCTGAGGTTAGAGATACAGAACGATTTTCTCTTGGTAATTGGTTCTTCATTGATGGTACATGTCGAGGTTCTACTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAGAAGATGAATGTGATCATCAAAATTTATGTCACGAAGATAGTAGCTATGGAAGGAATATATCAGAAACATGGGGTCTAACGATAGTAGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAATTTTGGCTTGCCTGTTAGGCTTTAG
Protein sequence

>Msa0142470

MLSCDDDDDGDIDLFYDSLDILSGEDSVLAEEGFGSERRGCFVYDEIWVNEPISVKERRERFLQGMDLAYTSSRVCSQEKTTSFDDWSVTLGSERIVASSGAVSNASISPSGKVSGKLVLSGWNAASEAEVLLEDLKRRREYEVDASFQEHRQREGEAKEEFWDFDNGKANRKNWLKRFVNIRKGDKGNFRSKLNAATNKTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVLSRDKSRPPFVSLPNDIFQIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCIQFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTCRFYVASGKYFQLEAQINIHGKKKALGNKITGIQFFQNNCQRIMITSEDSKICILDRTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDFKSGSSKKMKSDYSCEYFSFKGVTVAIPWCGMKTDRRGCRINFSHYSLEAKTKLEVTSEVRDTERFSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQNLCHEDSSYGRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL*