AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754720 MtrunA17_Chr5g0401781 94.313 211 9 2 1 211 1 208 3.21e-144 400
Msa0754720 MtrunA17_Chr4g0053351 75.132 189 45 2 20 208 3 189 3.24e-101 291
Msa0754720 MtrunA17_Chr4g0035151 62.842 183 62 1 13 195 5 181 3.98e-79 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754720 AT4G39220.2 66.292 178 60 0 28 205 13 190 2.35e-88 258
Msa0754720 AT4G39220.1 66.292 178 60 0 28 205 13 190 2.35e-88 258
Msa0754720 AT2G21600.1 60.000 195 76 2 17 211 3 195 4.67e-83 245
Msa0754720 AT2G23310.1 64.088 181 63 2 25 205 33 211 5.64e-79 235
Msa0754720 AT2G23310.2 64.088 181 62 3 25 205 33 210 4.97e-77 230
Msa0754720 AT2G18240.1 53.409 176 81 1 17 192 6 180 6.79e-63 195
Msa0754720 AT2G18240.2 53.409 176 81 1 17 192 6 180 6.95e-63 195

Find 115 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATCTGCAAATAATAAA+AGG 0.169181 5_2:-8428182 None:intergenic
ATTACTTGTGGGATCTTATA+AGG 0.171933 5_2:-8425957 None:intergenic
TTCCCTATTGGGCAACTATT+TGG 0.179428 5_2:+8427988 Msa0754720:three_prime_UTR
AATCCAAAATTAAATAAAAT+TGG 0.212256 5_2:-8428436 None:intergenic
TCCTAAAATCATATATTAAA+AGG 0.246525 5_2:-8428245 None:intergenic
CTGGATGTTCAATTCCCTAT+TGG 0.268696 5_2:+8427976 Msa0754720:three_prime_UTR
GATGCCTTCGATGGCGGCTT+TGG 0.278485 5_2:+8428010 Msa0754720:three_prime_UTR
TAATGTGAAGCTACATGTTT+GGG 0.279412 5_2:-8427876 None:intergenic
GGCCTATACTCCTCTTCTAC+TGG 0.286487 5_2:+8427544 Msa0754720:CDS
AATCTCTTCGGTGGCGGTTC+CGG 0.307108 5_2:-8426084 None:intergenic
CGTTTGATATTCCAGTCTTC+TGG 0.311008 5_2:+8427523 Msa0754720:CDS
CATCCAAATAGTTGCCCAAT+AGG 0.316865 5_2:-8427991 None:intergenic
TGAATTCAGCAATAAGAGTT+TGG 0.333284 5_2:-8428118 None:intergenic
GTTCCCCTTTCTTTCTATAT+AGG 0.342462 5_2:+8428085 Msa0754720:three_prime_UTR
ATTTAAAAGTCTCAGATGAT+TGG 0.346254 5_2:-8428371 None:intergenic
TGGATGTTCAATTCCCTATT+GGG 0.350059 5_2:+8427977 Msa0754720:three_prime_UTR
CAGCTCCATCACCCGCAAAT+TGG 0.353642 5_2:-8426024 None:intergenic
TGTAGTATTGCGGTTTCCGC+TGG 0.355795 5_2:-8426110 None:intergenic
AGATATGTACCGTTCAATTT+CGG 0.357992 5_2:+8427621 Msa0754720:CDS
ATAATGTGAAGCTACATGTT+TGG 0.362106 5_2:-8427877 None:intergenic
TACAATTGAAACAAGCGATA+TGG 0.364821 5_2:+8426129 Msa0754720:CDS
ATGCCTTCGATGGCGGCTTT+GGG 0.380608 5_2:+8428011 Msa0754720:three_prime_UTR
GGCGGTTCCGGTGCCGGTGC+CGG 0.385511 5_2:-8426072 None:intergenic
TTCGGTGGCGGTTCCGGTGC+CGG 0.385777 5_2:-8426078 None:intergenic
TCCGATCCAATCCAATTTGC+GGG 0.387123 5_2:+8426013 Msa0754720:five_prime_UTR
ACCGTTCAATTTCGGAAAAC+AGG 0.388365 5_2:+8427629 Msa0754720:CDS
CTAGCGTATATGTGAACATC+TGG 0.408780 5_2:+8427957 Msa0754720:three_prime_UTR
TTACTTGTGGGATCTTATAA+GGG 0.410208 5_2:-8425956 None:intergenic
TAAAATTGGCACAGTACAAC+TGG 0.419750 5_2:-8428422 None:intergenic
GCCTTCCTATATAGAAAGAA+AGG 0.426650 5_2:-8428090 None:intergenic
CTCCGCGTCTACTTCTTAGA+AGG 0.426734 5_2:+8426239 Msa0754720:CDS
AACTCATCGGAAGCTCTAAT+AGG 0.427663 5_2:-8426374 None:intergenic
GGCGGCTTTGGGAAGATGTT+GGG 0.434631 5_2:+8428022 Msa0754720:three_prime_UTR
TTCCGCTGGGGAAATCTCTT+CGG 0.439901 5_2:-8426096 None:intergenic
CCGGCGTCGACGACGACTGC+TGG 0.442121 5_2:-8426053 None:intergenic
ATCCAAATAGTTGCCCAATA+GGG 0.450449 5_2:-8427990 None:intergenic
GCCTCCCTGAGTTCAAGTTC+TGG 0.451201 5_2:+8426414 Msa0754720:CDS
TACGTCGTTACGTACGGTCT+TGG 0.457317 5_2:+8426266 Msa0754720:CDS
CCAATCCAATTTGCGGGTGA+TGG 0.461340 5_2:+8426019 Msa0754720:exon
CCCATCTGCAAATAATAAAA+GGG 0.463408 5_2:-8428181 None:intergenic
ATCCATCGCGGTAGCACGTA+CGG 0.464069 5_2:-8426185 None:intergenic
AATAAAAGGGACTGCTGCAC+AGG 0.465889 5_2:-8428168 None:intergenic
CAGAAATTTGAAATTACTTG+TGG 0.474213 5_2:-8425969 None:intergenic
TCAGAGGCGTCGGCGATGGC+GGG 0.474347 5_2:-8426338 None:intergenic
CCATCACCCGCAAATTGGAT+TGG 0.476469 5_2:-8426019 None:intergenic
AGGAGTATAGGCCAGAAGAC+TGG 0.477362 5_2:-8427534 None:intergenic
ATCCGATCCAATCCAATTTG+CGG 0.479580 5_2:+8426012 Msa0754720:five_prime_UTR
GTCGACGCCGGCACCGGCAC+CGG 0.482106 5_2:+8426065 Msa0754720:CDS
GCCTATACTCCTCTTCTACT+GGG 0.482573 5_2:+8427545 Msa0754720:CDS
AACTATTTGGATGCCTTCGA+TGG 0.485046 5_2:+8428001 Msa0754720:three_prime_UTR
CCTTCCTATATAGAAAGAAA+GGG 0.485262 5_2:-8428089 None:intergenic
GTCAGAGGCGTCGGCGATGG+CGG 0.486654 5_2:-8426339 None:intergenic
CAATTTGCGGGTGATGGAGC+TGG 0.487133 5_2:+8426025 Msa0754720:exon
TGGCGGCTTTGGGAAGATGT+TGG 0.490480 5_2:+8428021 Msa0754720:three_prime_UTR
CCCTTTCTTTCTATATAGGA+AGG 0.492518 5_2:+8428089 Msa0754720:three_prime_UTR
TCCATCGCGGTAGCACGTAC+GGG 0.502160 5_2:-8426184 None:intergenic
CGATGGCGGGATCAACTTGA+GGG 0.503574 5_2:-8426325 None:intergenic
AACTGAAAATTTCAGTCCAC+AGG 0.507776 5_2:-8427825 None:intergenic
GACTGATTAAGATTGCTTTG+AGG 0.509371 5_2:+8427933 Msa0754720:three_prime_UTR
AGAAATTTGAAATTACTTGT+GGG 0.510624 5_2:-8425968 None:intergenic
ACCCAGTAGAAGAGGAGTAT+AGG 0.512859 5_2:-8427546 None:intergenic
GGCTTCTACGTCGTTACGTA+CGG 0.512972 5_2:+8426260 Msa0754720:CDS
CGGGATCAACTTGAGGGGAG+AGG 0.513275 5_2:-8426319 None:intergenic
ACCGTCAGAGGCGTCGGCGA+TGG 0.514055 5_2:-8426342 None:intergenic
TACATCCTCAATCTTCTCAT+CGG 0.515635 5_2:+8426293 Msa0754720:CDS
TATTACCAGAACTTGAACTC+AGG 0.516687 5_2:-8426419 None:intergenic
TCAGGGAGGCGGCGAACGAA+AGG 0.517684 5_2:-8426401 None:intergenic
GTAGTATTGCGGTTTCCGCT+GGG 0.520236 5_2:-8426109 None:intergenic
GTCGTCGTCGACGCCGGCAC+CGG 0.524903 5_2:+8426059 Msa0754720:CDS
TGGGGAAATCTCTTCGGTGG+CGG 0.525533 5_2:-8426090 None:intergenic
ACAAGACCACCCAGTAGAAG+AGG 0.526419 5_2:-8427554 None:intergenic
TTGTTTCAATTGTAGTATTG+CGG 0.528509 5_2:-8426120 None:intergenic
TACGTGCTACCGCGATGGAT+AGG 0.536752 5_2:+8426188 Msa0754720:CDS
ACGTGCTACCGCGATGGATA+GGG 0.540998 5_2:+8426189 Msa0754720:CDS
CGCTGGGGAAATCTCTTCGG+TGG 0.542688 5_2:-8426093 None:intergenic
GCGATGGCGGGATCAACTTG+AGG 0.546409 5_2:-8426326 None:intergenic
AGTAGGACCGTCAGAGGCGT+CGG 0.550171 5_2:-8426348 None:intergenic
GCCATCGCCGACGCCTCTGA+CGG 0.553406 5_2:+8426341 Msa0754720:CDS
CCCCGTACGTGCTACCGCGA+TGG 0.554113 5_2:+8426183 Msa0754720:CDS
TCTTGTTCTCACTTACTATG+AGG 0.557944 5_2:+8427571 Msa0754720:CDS
CTTCCCAAAGCCGCCATCGA+AGG 0.572881 5_2:-8428014 None:intergenic
TATTTGGATGCCTTCGATGG+CGG 0.573269 5_2:+8428004 Msa0754720:three_prime_UTR
AAATCATATATTAAAAGGAA+AGG 0.574411 5_2:-8428240 None:intergenic
ATTGGCACAGTACAACTGGT+TGG 0.579263 5_2:-8428418 None:intergenic
GGAAACCGATGAGAAGATTG+AGG 0.580080 5_2:-8426298 None:intergenic
AGGAAGAGTAGGACCGTCAG+AGG 0.580884 5_2:-8426354 None:intergenic
TTGGATCGGATGTAACGTGC+TGG 0.585151 5_2:-8426000 None:intergenic
ACCCGCAAATTGGATTGGAT+CGG 0.590176 5_2:-8426014 None:intergenic
GGAGGCGGCGAACGAAAGGA+CGG 0.592422 5_2:-8426397 None:intergenic
TGTTCTCACTTACTATGAGG+AGG 0.595668 5_2:+8427574 Msa0754720:CDS
ATTACCAGAACTTGAACTCA+GGG 0.599316 5_2:-8426418 None:intergenic
AGTGAAAATAACTTAAGAGA+GGG 0.600585 5_2:-8428270 None:intergenic
ATACAACCGAGGGGTAACCT+TGG 0.605572 5_2:+8428477 Msa0754720:three_prime_UTR
CCAGCAGTCGTCGTCGACGC+CGG 0.606494 5_2:+8426053 Msa0754720:CDS
GTTGCGCCAAGGTTACCCCT+CGG 0.606505 5_2:-8428483 None:intergenic
GAAGCTCTAATAGGAAGAGT+AGG 0.606900 5_2:-8426365 None:intergenic
TAGTATTGCGGTTTCCGCTG+GGG 0.617844 5_2:-8426108 None:intergenic
AAGTGAAAATAACTTAAGAG+AGG 0.622794 5_2:-8428271 None:intergenic
CTTCCTATATAGAAAGAAAG+GGG 0.625817 5_2:-8428088 None:intergenic
AGAAAGCACAAGTCTTCCTG+TGG 0.635231 5_2:+8427809 Msa0754720:CDS
AGAACTTGAACTCAGGGAGG+CGG 0.636334 5_2:-8426412 None:intergenic
AACGAAAGGACGGAACTCAT+CGG 0.637257 5_2:-8426387 None:intergenic
CGATCACTTGATACAACCGA+GGG 0.658454 5_2:+8428467 Msa0754720:three_prime_UTR
TATACTCCTCTTCTACTGGG+TGG 0.667420 5_2:+8427548 Msa0754720:CDS
GATGGCGGGATCAACTTGAG+GGG 0.681913 5_2:-8426324 None:intergenic
AGCCTTCTAAGAAGTAGACG+CGG 0.688638 5_2:-8426241 None:intergenic
CCATCGCGGTAGCACGTACG+GGG 0.693992 5_2:-8426183 None:intergenic
CACCGAAGAGATTTCCCCAG+CGG 0.694340 5_2:+8426094 Msa0754720:CDS
CTTCTAAGAAGTAGACGCGG+AGG 0.701782 5_2:-8426238 None:intergenic
ACGATCACTTGATACAACCG+AGG 0.704838 5_2:+8428466 Msa0754720:three_prime_UTR
AATGTGAAGCTACATGTTTG+GGG 0.712062 5_2:-8427875 None:intergenic
ACCAGAACTTGAACTCAGGG+AGG 0.720457 5_2:-8426415 None:intergenic
ACCGAAAACCCTATCCATCG+CGG 0.766599 5_2:-8426197 None:intergenic
GGGCAGGTACTCGATCACAG+TGG 0.793101 5_2:+8427464 Msa0754720:intron
GATCACTTGATACAACCGAG+GGG 0.833564 5_2:+8428468 Msa0754720:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAATTTTTTTGTTAT+TGG - chr5_2:8428148-8428167 None:intergenic 10.0%
!!! TTTTTCTGATATAAATTTTA+TGG + chr5_2:8428332-8428351 Msa0754720:three_prime_UTR 10.0%
!! AATCCAAAATTAAATAAAAT+TGG - chr5_2:8428439-8428458 None:intergenic 10.0%
!!! CAAAAAAGTATTTTACAAAA+GGG - chr5_2:8428066-8428085 None:intergenic 15.0%
!!! ACAAAAAAGTATTTTACAAA+AGG - chr5_2:8428067-8428086 None:intergenic 15.0%
!! AAATCATATATTAAAAGGAA+AGG - chr5_2:8428243-8428262 None:intergenic 15.0%
!!! TCCTTTTAATATATGATTTT+AGG + chr5_2:8428244-8428263 Msa0754720:three_prime_UTR 15.0%
!! TCCTAAAATCATATATTAAA+AGG - chr5_2:8428248-8428267 None:intergenic 15.0%
!!! AGAAATTTGAAATTACTTGT+GGG - chr5_2:8425971-8425990 None:intergenic 20.0%
!!! ATCGTTTAATTGATTGATTT+TGG + chr5_2:8426462-8426481 Msa0754720:intron 20.0%
!!! TAATTGATTGATTTTGGTAT+AGG + chr5_2:8426468-8426487 Msa0754720:intron 20.0%
!! TGCATAATTATTGTTAAATG+TGG + chr5_2:8426626-8426645 Msa0754720:intron 20.0%
!!! TTCTCATCAAAATTTCTTTT+TGG - chr5_2:8426737-8426756 None:intergenic 20.0%
!!! TTTTCTTATCTGTTATTTCA+TGG + chr5_2:8428299-8428318 Msa0754720:three_prime_UTR 20.0%
!!! GTGCCAATTTTATTTAATTT+TGG + chr5_2:8428433-8428452 Msa0754720:three_prime_UTR 20.0%
!! CAGAAATTTGAAATTACTTG+TGG - chr5_2:8425972-8425991 None:intergenic 25.0%
! TTGTTTCAATTGTAGTATTG+CGG - chr5_2:8426123-8426142 None:intergenic 25.0%
! AATTATGCACAATATCATCA+AGG - chr5_2:8426615-8426634 None:intergenic 25.0%
! TTTGTTAGATAGTTGTTAGT+TGG + chr5_2:8426868-8426887 Msa0754720:intron 25.0%
! TATGGAAACAACTTATGATA+AGG + chr5_2:8427088-8427107 Msa0754720:intron 25.0%
!!! GTTGTTTTCATTAAGTATAC+TGG - chr5_2:8427149-8427168 None:intergenic 25.0%
! ATTAAGTTCTTTATCCAAAG+AGG + chr5_2:8427270-8427289 Msa0754720:intron 25.0%
!!! AGTTTCTTTTTCACTTAGTA+AGG + chr5_2:8427396-8427415 Msa0754720:intron 25.0%
!!! TTGTGTTGATTGTTGTTATA+AGG + chr5_2:8427706-8427725 Msa0754720:intron 25.0%
! AGTGAAAATAACTTAAGAGA+GGG - chr5_2:8428273-8428292 None:intergenic 25.0%
! AAGTGAAAATAACTTAAGAG+AGG - chr5_2:8428274-8428293 None:intergenic 25.0%
!!! TCTCTTAAGTTATTTTCACT+TGG + chr5_2:8428273-8428292 Msa0754720:three_prime_UTR 25.0%
!!! TTTATATCAGAAAAAGTGCT+AGG - chr5_2:8428327-8428346 None:intergenic 25.0%
! ATTTAAAAGTCTCAGATGAT+TGG - chr5_2:8428374-8428393 None:intergenic 25.0%
TTACTTGTGGGATCTTATAA+GGG - chr5_2:8425959-8425978 None:intergenic 30.0%
ATTACTTGTGGGATCTTATA+AGG - chr5_2:8425960-8425979 None:intergenic 30.0%
TACAATTGAAACAAGCGATA+TGG + chr5_2:8426129-8426148 Msa0754720:CDS 30.0%
TAACTACCATTGTATGTCAA+CGG + chr5_2:8426908-8426927 Msa0754720:intron 30.0%
TAAGTATACTGGATAGCTTA+TGG - chr5_2:8427138-8427157 None:intergenic 30.0%
CCTAAAACAACATATCAATG+TGG - chr5_2:8427313-8427332 None:intergenic 30.0%
!!! CCACATTGATATGTTGTTTT+AGG + chr5_2:8427310-8427329 Msa0754720:intron 30.0%
AGATATGTACCGTTCAATTT+CGG + chr5_2:8427621-8427640 Msa0754720:CDS 30.0%
TAATGTGAAGCTACATGTTT+GGG - chr5_2:8427879-8427898 None:intergenic 30.0%
ATAATGTGAAGCTACATGTT+TGG - chr5_2:8427880-8427899 None:intergenic 30.0%
CTTCCTATATAGAAAGAAAG+GGG - chr5_2:8428091-8428110 None:intergenic 30.0%
CCTTCCTATATAGAAAGAAA+GGG - chr5_2:8428092-8428111 None:intergenic 30.0%
TGAATTCAGCAATAAGAGTT+TGG - chr5_2:8428121-8428140 None:intergenic 30.0%
! TCCCTTTTATTATTTGCAGA+TGG + chr5_2:8428180-8428199 Msa0754720:three_prime_UTR 30.0%
CCCATCTGCAAATAATAAAA+GGG - chr5_2:8428184-8428203 None:intergenic 30.0%
! CCCTTTTATTATTTGCAGAT+GGG + chr5_2:8428181-8428200 Msa0754720:three_prime_UTR 30.0%
! CCTTTTATTATTTGCAGATG+GGG + chr5_2:8428182-8428201 Msa0754720:three_prime_UTR 30.0%
AGGAAAGGAAAAAAATGCAA+TGG - chr5_2:8428228-8428247 None:intergenic 30.0%
TACATCCTCAATCTTCTCAT+CGG + chr5_2:8426293-8426312 Msa0754720:CDS 35.0%
ATTACCAGAACTTGAACTCA+GGG - chr5_2:8426421-8426440 None:intergenic 35.0%
TATTACCAGAACTTGAACTC+AGG - chr5_2:8426422-8426441 None:intergenic 35.0%
TGACGGTAATGAATGATTGA+CGG - chr5_2:8426541-8426560 None:intergenic 35.0%
ACGAAGTGTGTATAAACTGA+CGG - chr5_2:8426558-8426577 None:intergenic 35.0%
! CAATCTAGCTTGCAATATCA+AGG - chr5_2:8426670-8426689 None:intergenic 35.0%
TTACATCCGTTGACATACAA+TGG - chr5_2:8426917-8426936 None:intergenic 35.0%
! TTCTCTTCCTTTTCTTCACA+GGG + chr5_2:8426997-8427016 Msa0754720:intron 35.0%
TCAAATAAACCAACCCAAAC+AGG - chr5_2:8427023-8427042 None:intergenic 35.0%
GTATGTGATGAGAGTTTACT+GGG + chr5_2:8427243-8427262 Msa0754720:intron 35.0%
CTAGATGATGTTGTCTTCTT+CGG + chr5_2:8427350-8427369 Msa0754720:intron 35.0%
TCTTGTTCTCACTTACTATG+AGG + chr5_2:8427571-8427590 Msa0754720:CDS 35.0%
! ACCTGTTTTCCGAAATTGAA+CGG - chr5_2:8427633-8427652 None:intergenic 35.0%
! TTGTTGTTGTGATTGTTGTG+TGG + chr5_2:8427668-8427687 Msa0754720:intron 35.0%
AACTGAAAATTTCAGTCCAC+AGG - chr5_2:8427828-8427847 None:intergenic 35.0%
AATGTGAAGCTACATGTTTG+GGG - chr5_2:8427878-8427897 None:intergenic 35.0%
GACTGATTAAGATTGCTTTG+AGG + chr5_2:8427933-8427952 Msa0754720:three_prime_UTR 35.0%
TGGATGTTCAATTCCCTATT+GGG + chr5_2:8427977-8427996 Msa0754720:three_prime_UTR 35.0%
ATCCAAATAGTTGCCCAATA+GGG - chr5_2:8427993-8428012 None:intergenic 35.0%
GTTCCCCTTTCTTTCTATAT+AGG + chr5_2:8428085-8428104 Msa0754720:three_prime_UTR 35.0%
CCCTTTCTTTCTATATAGGA+AGG + chr5_2:8428089-8428108 Msa0754720:three_prime_UTR 35.0%
GCCTTCCTATATAGAAAGAA+AGG - chr5_2:8428093-8428112 None:intergenic 35.0%
CCCCATCTGCAAATAATAAA+AGG - chr5_2:8428185-8428204 None:intergenic 35.0%
TAAAATTGGCACAGTACAAC+TGG - chr5_2:8428425-8428444 None:intergenic 35.0%
ATCCGATCCAATCCAATTTG+CGG + chr5_2:8426012-8426031 Msa0754720:five_prime_UTR 40.0%
! GAAGCTCTAATAGGAAGAGT+AGG - chr5_2:8426368-8426387 None:intergenic 40.0%
! AACTCATCGGAAGCTCTAAT+AGG - chr5_2:8426377-8426396 None:intergenic 40.0%
ACTTCGTTCTCGTGTGATTA+AGG + chr5_2:8426571-8426590 Msa0754720:intron 40.0%
AGAACCATAGAATGTGGTTG+AGG - chr5_2:8426981-8427000 None:intergenic 40.0%
AGGAAGAGAACCATAGAATG+TGG - chr5_2:8426987-8427006 None:intergenic 40.0%
! GTTCTCTTCCTTTTCTTCAC+AGG + chr5_2:8426996-8427015 Msa0754720:intron 40.0%
AGACTGTTTCAGAGAGCTTA+TGG + chr5_2:8427070-8427089 Msa0754720:intron 40.0%
CGTATGTGATGAGAGTTTAC+TGG + chr5_2:8427242-8427261 Msa0754720:intron 40.0%
ATCCAAAGAGGACCATAGTT+TGG + chr5_2:8427282-8427301 Msa0754720:intron 40.0%
TCCAAAGAGGACCATAGTTT+GGG + chr5_2:8427283-8427302 Msa0754720:intron 40.0%
AATGTGGAAGACCCAAACTA+TGG - chr5_2:8427297-8427316 None:intergenic 40.0%
GAAGACAACATCATCTAGGT+AGG - chr5_2:8427348-8427367 None:intergenic 40.0%
CGAAGAAGACAACATCATCT+AGG - chr5_2:8427352-8427371 None:intergenic 40.0%
! GATGTTGTCTTCTTCGGTTT+TGG + chr5_2:8427356-8427375 Msa0754720:intron 40.0%
! AGCTGCTCAATTTTCCTTTG+TGG + chr5_2:8427443-8427462 Msa0754720:intron 40.0%
! GCTGCTCAATTTTCCTTTGT+GGG + chr5_2:8427444-8427463 Msa0754720:intron 40.0%
CGTTTGATATTCCAGTCTTC+TGG + chr5_2:8427523-8427542 Msa0754720:CDS 40.0%
TGTTCTCACTTACTATGAGG+AGG + chr5_2:8427574-8427593 Msa0754720:CDS 40.0%
ACCGTTCAATTTCGGAAAAC+AGG + chr5_2:8427629-8427648 Msa0754720:CDS 40.0%
CTAGCGTATATGTGAACATC+TGG + chr5_2:8427957-8427976 Msa0754720:three_prime_UTR 40.0%
CTGGATGTTCAATTCCCTAT+TGG + chr5_2:8427976-8427995 Msa0754720:three_prime_UTR 40.0%
TTCCCTATTGGGCAACTATT+TGG + chr5_2:8427988-8428007 Msa0754720:three_prime_UTR 40.0%
CATCCAAATAGTTGCCCAAT+AGG - chr5_2:8427994-8428013 None:intergenic 40.0%
AACTATTTGGATGCCTTCGA+TGG + chr5_2:8428001-8428020 Msa0754720:three_prime_UTR 40.0%
TCCGATCCAATCCAATTTGC+GGG + chr5_2:8426013-8426032 Msa0754720:five_prime_UTR 45.0%
! ACCCGCAAATTGGATTGGAT+CGG - chr5_2:8426017-8426036 None:intergenic 45.0%
! AGCCTTCTAAGAAGTAGACG+CGG - chr5_2:8426244-8426263 None:intergenic 45.0%
GGAAACCGATGAGAAGATTG+AGG - chr5_2:8426301-8426320 None:intergenic 45.0%
AACGAAAGGACGGAACTCAT+CGG - chr5_2:8426390-8426409 None:intergenic 45.0%
TGCAAGCTAGATTGTGCATG+CGG + chr5_2:8426676-8426695 Msa0754720:intron 45.0%
GAGTCCTCAACCACATTCTA+TGG + chr5_2:8426974-8426993 Msa0754720:intron 45.0%
AAACAGGCCCTGTGAAGAAA+AGG - chr5_2:8427007-8427026 None:intergenic 45.0%
! TTTTCTTCACAGGGCCTGTT+TGG + chr5_2:8427006-8427025 Msa0754720:intron 45.0%
TTTCTTCACAGGGCCTGTTT+GGG + chr5_2:8427007-8427026 Msa0754720:intron 45.0%
ACCCAAACTATGGTCCTCTT+TGG - chr5_2:8427287-8427306 None:intergenic 45.0%
CACTTAGTAAGGTCTGCAGA+AGG + chr5_2:8427407-8427426 Msa0754720:intron 45.0%
! CTCAATTTTCCTTTGTGGGC+AGG + chr5_2:8427448-8427467 Msa0754720:intron 45.0%
GCCTATACTCCTCTTCTACT+GGG + chr5_2:8427545-8427564 Msa0754720:CDS 45.0%
! ACCCAGTAGAAGAGGAGTAT+AGG - chr5_2:8427549-8427568 None:intergenic 45.0%
TATACTCCTCTTCTACTGGG+TGG + chr5_2:8427548-8427567 Msa0754720:CDS 45.0%
! AGAAAGCACAAGTCTTCCTG+TGG + chr5_2:8427809-8427828 Msa0754720:CDS 45.0%
TATTTGGATGCCTTCGATGG+CGG + chr5_2:8428004-8428023 Msa0754720:three_prime_UTR 45.0%
AATAAAAGGGACTGCTGCAC+AGG - chr5_2:8428171-8428190 None:intergenic 45.0%
ATTGGCACAGTACAACTGGT+TGG - chr5_2:8428421-8428440 None:intergenic 45.0%
ACGATCACTTGATACAACCG+AGG + chr5_2:8428466-8428485 Msa0754720:three_prime_UTR 45.0%
CGATCACTTGATACAACCGA+GGG + chr5_2:8428467-8428486 Msa0754720:three_prime_UTR 45.0%
GATCACTTGATACAACCGAG+GGG + chr5_2:8428468-8428487 Msa0754720:three_prime_UTR 45.0%
TTGGATCGGATGTAACGTGC+TGG - chr5_2:8426003-8426022 None:intergenic 50.0%
CCATCACCCGCAAATTGGAT+TGG - chr5_2:8426022-8426041 None:intergenic 50.0%
CCAATCCAATTTGCGGGTGA+TGG + chr5_2:8426019-8426038 Msa0754720:exon 50.0%
TTCCGCTGGGGAAATCTCTT+CGG - chr5_2:8426099-8426118 None:intergenic 50.0%
TAGTATTGCGGTTTCCGCTG+GGG - chr5_2:8426111-8426130 None:intergenic 50.0%
GTAGTATTGCGGTTTCCGCT+GGG - chr5_2:8426112-8426131 None:intergenic 50.0%
TGTAGTATTGCGGTTTCCGC+TGG - chr5_2:8426113-8426132 None:intergenic 50.0%
! ACCGCGATGGATAGGGTTTT+CGG + chr5_2:8426196-8426215 Msa0754720:CDS 50.0%
ACCGAAAACCCTATCCATCG+CGG - chr5_2:8426200-8426219 None:intergenic 50.0%
! CTTCTAAGAAGTAGACGCGG+AGG - chr5_2:8426241-8426260 None:intergenic 50.0%
CTCCGCGTCTACTTCTTAGA+AGG + chr5_2:8426239-8426258 Msa0754720:CDS 50.0%
GGCTTCTACGTCGTTACGTA+CGG + chr5_2:8426260-8426279 Msa0754720:CDS 50.0%
TACGTCGTTACGTACGGTCT+TGG + chr5_2:8426266-8426285 Msa0754720:CDS 50.0%
AGAACTTGAACTCAGGGAGG+CGG - chr5_2:8426415-8426434 None:intergenic 50.0%
ACCAGAACTTGAACTCAGGG+AGG - chr5_2:8426418-8426437 None:intergenic 50.0%
! AGGAGTATAGGCCAGAAGAC+TGG - chr5_2:8427537-8427556 None:intergenic 50.0%
GGCCTATACTCCTCTTCTAC+TGG + chr5_2:8427544-8427563 Msa0754720:CDS 50.0%
ACAAGACCACCCAGTAGAAG+AGG - chr5_2:8427557-8427576 None:intergenic 50.0%
CAGCTCCATCACCCGCAAAT+TGG - chr5_2:8426027-8426046 None:intergenic 55.0%
!! CAATTTGCGGGTGATGGAGC+TGG + chr5_2:8426025-8426044 Msa0754720:exon 55.0%
! AATCTCTTCGGTGGCGGTTC+CGG - chr5_2:8426087-8426106 None:intergenic 55.0%
TGGGGAAATCTCTTCGGTGG+CGG - chr5_2:8426093-8426112 None:intergenic 55.0%
CACCGAAGAGATTTCCCCAG+CGG + chr5_2:8426094-8426113 Msa0754720:CDS 55.0%
ATCCATCGCGGTAGCACGTA+CGG - chr5_2:8426188-8426207 None:intergenic 55.0%
TACGTGCTACCGCGATGGAT+AGG + chr5_2:8426188-8426207 Msa0754720:CDS 55.0%
ACGTGCTACCGCGATGGATA+GGG + chr5_2:8426189-8426208 Msa0754720:CDS 55.0%
!! GATGGCGGGATCAACTTGAG+GGG - chr5_2:8426327-8426346 None:intergenic 55.0%
!! CGATGGCGGGATCAACTTGA+GGG - chr5_2:8426328-8426347 None:intergenic 55.0%
AGGAAGAGTAGGACCGTCAG+AGG - chr5_2:8426357-8426376 None:intergenic 55.0%
! GCCTCCCTGAGTTCAAGTTC+TGG + chr5_2:8426414-8426433 Msa0754720:CDS 55.0%
TTCACAGGGCCTGTTTGGGT+TGG + chr5_2:8427011-8427030 Msa0754720:intron 55.0%
GATCGAGTACCTGCCCACAA+AGG - chr5_2:8427460-8427479 None:intergenic 55.0%
! ATGCCTTCGATGGCGGCTTT+GGG + chr5_2:8428011-8428030 Msa0754720:three_prime_UTR 55.0%
!! TGGCGGCTTTGGGAAGATGT+TGG + chr5_2:8428021-8428040 Msa0754720:three_prime_UTR 55.0%
!! GGCGGCTTTGGGAAGATGTT+GGG + chr5_2:8428022-8428041 Msa0754720:three_prime_UTR 55.0%
CGCTGGGGAAATCTCTTCGG+TGG - chr5_2:8426096-8426115 None:intergenic 60.0%
TCCATCGCGGTAGCACGTAC+GGG - chr5_2:8426187-8426206 None:intergenic 60.0%
CGGGATCAACTTGAGGGGAG+AGG - chr5_2:8426322-8426341 None:intergenic 60.0%
!! GCGATGGCGGGATCAACTTG+AGG - chr5_2:8426329-8426348 None:intergenic 60.0%
! AGTAGGACCGTCAGAGGCGT+CGG - chr5_2:8426351-8426370 None:intergenic 60.0%
GGGCAGGTACTCGATCACAG+TGG + chr5_2:8427464-8427483 Msa0754720:intron 60.0%
! GATGCCTTCGATGGCGGCTT+TGG + chr5_2:8428010-8428029 Msa0754720:three_prime_UTR 60.0%
CTTCCCAAAGCCGCCATCGA+AGG - chr5_2:8428017-8428036 None:intergenic 60.0%
CCATCGCGGTAGCACGTACG+GGG - chr5_2:8426186-8426205 None:intergenic 65.0%
GGAGGCGGCGAACGAAAGGA+CGG - chr5_2:8426400-8426419 None:intergenic 65.0%
TCAGGGAGGCGGCGAACGAA+AGG - chr5_2:8426404-8426423 None:intergenic 65.0%
CCAGCAGTCGTCGTCGACGC+CGG + chr5_2:8426053-8426072 Msa0754720:CDS 70.0%
! TTCGGTGGCGGTTCCGGTGC+CGG - chr5_2:8426081-8426100 None:intergenic 70.0%
CCCCGTACGTGCTACCGCGA+TGG + chr5_2:8426183-8426202 Msa0754720:CDS 70.0%
!! TCAGAGGCGTCGGCGATGGC+GGG - chr5_2:8426341-8426360 None:intergenic 70.0%
!! GTCAGAGGCGTCGGCGATGG+CGG - chr5_2:8426342-8426361 None:intergenic 70.0%
GCCATCGCCGACGCCTCTGA+CGG + chr5_2:8426341-8426360 Msa0754720:CDS 70.0%
!! ACCGTCAGAGGCGTCGGCGA+TGG - chr5_2:8426345-8426364 None:intergenic 70.0%
!! CCGGCGTCGACGACGACTGC+TGG - chr5_2:8426056-8426075 None:intergenic 75.0%
GTCGTCGTCGACGCCGGCAC+CGG + chr5_2:8426059-8426078 Msa0754720:CDS 75.0%
!!! GTCGACGCCGGCACCGGCAC+CGG + chr5_2:8426065-8426084 Msa0754720:CDS 80.0%
!!! GGCGGTTCCGGTGCCGGTGC+CGG - chr5_2:8426075-8426094 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8425951 8428497 8425951 ID=Msa0754720;Name=Msa0754720
chr5_2 mRNA 8425951 8428497 8425951 ID=Msa0754720-mRNA-1;Parent=Msa0754720;Name=Msa0754720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|3|661|211
chr5_2 exon 8425951 8426435 8425951 ID=Msa0754720-mRNA-1:exon:3824;Parent=Msa0754720-mRNA-1
chr5_2 exon 8427470 8427650 8427470 ID=Msa0754720-mRNA-1:exon:3825;Parent=Msa0754720-mRNA-1
chr5_2 exon 8427780 8428497 8427780 ID=Msa0754720-mRNA-1:exon:3826;Parent=Msa0754720-mRNA-1
chr5_2 five_prime_UTR 8425951 8426037 8425951 ID=Msa0754720-mRNA-1:five_prime_utr;Parent=Msa0754720-mRNA-1
chr5_2 CDS 8426038 8426435 8426038 ID=Msa0754720-mRNA-1:cds;Parent=Msa0754720-mRNA-1
chr5_2 CDS 8427470 8427650 8427470 ID=Msa0754720-mRNA-1:cds;Parent=Msa0754720-mRNA-1
chr5_2 CDS 8427780 8427836 8427780 ID=Msa0754720-mRNA-1:cds;Parent=Msa0754720-mRNA-1
chr5_2 three_prime_UTR 8427837 8428497 8427837 ID=Msa0754720-mRNA-1:three_prime_utr;Parent=Msa0754720-mRNA-1
Gene Sequence

>Msa0754720

ATGGAGCTGGCAGCACCAGCAGTCGTCGTCGACGCCGGCACCGGCACCGGAACCGCCACCGAAGAGATTTCCCCAGCGGAAACCGCAATACTACAATTGAAACAAGCGATATGGCAACAATATCAACACGTGCTAGACAAAACAACCCCGTACGTGCTACCGCGATGGATAGGGTTTTCGGTCGTCGCTTTCATCTACATCCTCCGCGTCTACTTCTTAGAAGGCTTCTACGTCGTTACGTACGGTCTTGGCATTTACATCCTCAATCTTCTCATCGGTTTCCTCTCCCCTCAAGTTGATCCCGCCATCGCCGACGCCTCTGACGGTCCTACTCTTCCTATTAGAGCTTCCGATGAGTTCCGTCCTTTCGTTCGCCGCCTCCCTGAGTTCAAGTTCTGGTACTCGATCACAGTGGCATTTTGCATTGCAATTGTGATGACTTTCTTTAGTGCGTTTGATATTCCAGTCTTCTGGCCTATACTCCTCTTCTACTGGGTGGTCTTGTTCTCACTTACTATGAGGAGGCAGATATCACATATGATCAAATACAGATATGTACCGTTCAATTTCGGAAAACAGCACTATCAGAGAAAGAGAGCATCAGAAGAAGAAAGCACAAGTCTTCCTGTGGACTGA

Protein sequence

>Msa0754720

MELAAPAVVVDAGTGTGTATEEISPAETAILQLKQAIWQQYQHVLDKTTPYVLPRWIGFSVVAFIYILRVYFLEGFYVVTYGLGIYILNLLIGFLSPQVDPAIADASDGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFCIAIVMTFFSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFNFGKQHYQRKRASEEESTSLPVD*