Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121230 | RHN79707.1 | 79.085 | 153 | 0 | 1 | 1 | 121 | 73 | 225 | 2.32e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121230 | sp|P38094|FLUG_EMENI | 31.126 | 151 | 70 | 2 | 1 | 119 | 261 | 409 | 5.49e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121230 | A0A396JYK1 | 79.085 | 153 | 0 | 1 | 1 | 121 | 73 | 225 | 1.11e-77 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0121200 | Msa0121230 | 0.812254 | 4.650742e-51 | -8.615850e-47 |
| Msa0121230 | Msa0374890 | 0.826800 | 2.223010e-54 | -8.615850e-47 |
| Msa0121230 | Msa0375070 | 0.805055 | 1.605636e-49 | -8.615850e-47 |
| Msa0121230 | Msa0470360 | 0.808497 | 3.009044e-50 | -8.615850e-47 |
| Msa0121230 | Msa0470880 | 0.836154 | 1.104919e-56 | -8.615850e-47 |
| Msa0121230 | Msa0545050 | 0.807787 | 4.260839e-50 | -8.615850e-47 |
| Msa0121230 | Msa0587120 | 0.800595 | 1.338593e-48 | -8.615850e-47 |
| Msa0121230 | Msa0600590 | 0.803914 | 2.776981e-49 | -8.615850e-47 |
| Msa0121230 | Msa0641130 | 0.815660 | 8.252210e-52 | -8.615850e-47 |
| Msa0121230 | Msa0720360 | 0.801172 | 1.020790e-48 | -8.615850e-47 |
| Msa0121230 | Msa0943970 | 0.832935 | 7.116551e-56 | -8.615850e-47 |
| Msa0121230 | Msa0944020 | 0.812287 | 4.574711e-51 | -8.615850e-47 |
| Msa0121230 | Msa1184690 | 0.830414 | 2.976279e-55 | -8.615850e-47 |
| Msa0121230 | Msa1238600 | 0.803299 | 3.725346e-49 | -8.615850e-47 |
| Msa0121230 | Msa1319560 | 0.800374 | 1.484966e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121230 | MtrunA17_Chr1g0180251 | 79.085 | 153 | 0 | 1 | 1 | 121 | 73 | 225 | 2.13e-81 | 238 |
| Msa0121230 | MtrunA17_Chr1g0180151 | 57.616 | 151 | 32 | 1 | 1 | 119 | 48 | 198 | 8.05e-53 | 175 |
| Msa0121230 | MtrunA17_Chr1g0180191 | 56.954 | 151 | 33 | 1 | 1 | 119 | 234 | 384 | 9.24e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121230 | AT3G53180.1 | 52.980 | 151 | 39 | 1 | 1 | 119 | 240 | 390 | 1.06e-48 | 166 |
Find 38 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACATCTTCTTGCTAAGTT+TGG | 0.245116 | 1_3:+46809900 | Msa0121230:five_prime_UTR |
| CAATACAAAGGTGACTAAAA+AGG | 0.331853 | 1_3:+46809733 | Msa0121230:five_prime_UTR |
| TTCCCTGAACTCTTCTACTT+AGG | 0.358843 | 1_3:+46811463 | Msa0121230:CDS |
| AACAAGACTGTTACTGTTGC+TGG | 0.364530 | 1_3:+46809659 | Msa0121230:intron |
| ATTAATAGCTTTGGTGATAG+AGG | 0.388711 | 1_3:+46810611 | Msa0121230:intron |
| CTCAAAGGAAGCATCATATC+TGG | 0.392897 | 1_3:+46810736 | Msa0121230:CDS |
| ATACCTAAGTAGAAGAGTTC+AGG | 0.435758 | 1_3:-46811466 | None:intergenic |
| TAGTTGCATTGGCAAGTTAT+GGG | 0.443544 | 1_3:-46809935 | None:intergenic |
| TATGATGCTTCCTTTGAGAA+TGG | 0.444647 | 1_3:-46810731 | None:intergenic |
| ACTGTTGCTGGTGAGATAGT+TGG | 0.444805 | 1_3:+46809671 | Msa0121230:five_prime_UTR |
| TTTGCAACTTCCACAGCCTC+CGG | 0.450044 | 1_3:-46811808 | None:intergenic |
| TGTTAAGACTTCATATTATG+TGG | 0.457290 | 1_3:+46811907 | Msa0121230:three_prime_UTR |
| TGACGGCGATCTCACTGTTC+CGG | 0.464854 | 1_3:+46811789 | Msa0121230:CDS |
| GGTCTTCAGCAGGTGTTAGC+TGG | 0.472877 | 1_3:+46809767 | Msa0121230:five_prime_UTR |
| TCAGTTTCAGTTACTGTGAA+AGG | 0.476526 | 1_3:+46812009 | Msa0121230:three_prime_UTR |
| TAAAGCATTTCTCTCCAAGT+TGG | 0.485709 | 1_3:+46809101 | Msa0121230:five_prime_UTR |
| AGCATAGCAGCATACTACTT+TGG | 0.485785 | 1_3:+46809701 | Msa0121230:five_prime_UTR |
| TCTCACTGTTCCGGAGGCTG+TGG | 0.486736 | 1_3:+46811798 | Msa0121230:CDS |
| GTAGTTGCATTGGCAAGTTA+TGG | 0.505738 | 1_3:-46809936 | None:intergenic |
| AGCTGAGGAGGGTCTTCAGC+AGG | 0.509082 | 1_3:+46809757 | Msa0121230:five_prime_UTR |
| TACCTAAGTAGAAGAGTTCA+GGG | 0.512127 | 1_3:-46811465 | None:intergenic |
| CTGCGTGATTCATGCATTGA+CGG | 0.522814 | 1_3:+46811772 | Msa0121230:CDS |
| TTATCTCCACAATGTTCTTG+AGG | 0.525804 | 1_3:+46810661 | Msa0121230:CDS |
| TACCCTGTGTGTAGTTGCAT+TGG | 0.530303 | 1_3:-46809946 | None:intergenic |
| AGAACATTGTGGAGATAAAG+AGG | 0.534266 | 1_3:-46810656 | None:intergenic |
| TGGAGGATATGATTCCAACT+TGG | 0.555232 | 1_3:-46809115 | None:intergenic |
| ACAATGTTCTTGAGGACAAG+AGG | 0.566181 | 1_3:+46810669 | Msa0121230:CDS |
| TCTGGCTTCTCTGTACTCCC+AGG | 0.578459 | 1_3:+46810754 | Msa0121230:CDS |
| TTCAGGGAATGCATAGGCAT+CGG | 0.581808 | 1_3:-46811449 | None:intergenic |
| AATGCATGAATCACGCAGAA+CGG | 0.585693 | 1_3:-46811767 | None:intergenic |
| GAAGAGTTCAGGGAATGCAT+AGG | 0.598920 | 1_3:-46811455 | None:intergenic |
| TACATCATATCCATTCTCAA+AGG | 0.609323 | 1_3:+46810721 | Msa0121230:CDS |
| CGGCGATCTCACTGTTCCGG+AGG | 0.613642 | 1_3:+46811792 | Msa0121230:CDS |
| TTGCCAATGCAACTACACAC+AGG | 0.633850 | 1_3:+46809943 | Msa0121230:exon |
| TCTTGTCCTCAAGAACATTG+TGG | 0.638906 | 1_3:-46810667 | None:intergenic |
| AAATAGAACATCATTGACAA+AGG | 0.649927 | 1_3:-46811936 | None:intergenic |
| TGCCAATGCAACTACACACA+GGG | 0.658439 | 1_3:+46809944 | Msa0121230:exon |
| TGGACTAGACATCAATACAA+AGG | 0.678680 | 1_3:+46809721 | Msa0121230:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTAAAATTTCAA+AGG | - | chr1_3:46810053-46810072 | None:intergenic | 10.0% |
| !! | TTTAAAAAATGTTTATAAGA+TGG | + | chr1_3:46810463-46810482 | Msa0121230:intron | 10.0% |
| !! | TTAAAAAATGTTTATAAGAT+GGG | + | chr1_3:46810464-46810483 | Msa0121230:intron | 10.0% |
| !!! | TGGTTTTAATATATGTTTAA+TGG | + | chr1_3:46809808-46809827 | Msa0121230:intron | 15.0% |
| !! | TTATTTCAATTAAACATAGA+TGG | - | chr1_3:46810085-46810104 | None:intergenic | 15.0% |
| !!! | ATTTTATCTTTTTGTTACAT+AGG | - | chr1_3:46810186-46810205 | None:intergenic | 15.0% |
| !! | AAGTAATACAACTAAAAATT+TGG | + | chr1_3:46810965-46810984 | Msa0121230:intron | 15.0% |
| !!! | AATGTTTTGTTATTTCAAAA+TGG | + | chr1_3:46811314-46811333 | Msa0121230:intron | 15.0% |
| !!! | TCAATATAGTTTTGAAAATA+AGG | - | chr1_3:46811512-46811531 | None:intergenic | 15.0% |
| !! | ATAGCTCACTATATTTATTT+AGG | - | chr1_3:46809343-46809362 | None:intergenic | 20.0% |
| !!! | TATTGATTTCTTACCATTTT+TGG | + | chr1_3:46809994-46810013 | Msa0121230:intron | 20.0% |
| !!! | ATTGATTTCTTACCATTTTT+GGG | + | chr1_3:46809995-46810014 | Msa0121230:intron | 20.0% |
| !! | TTAATTGAAATAATTTGAGC+TGG | + | chr1_3:46810092-46810111 | Msa0121230:intron | 20.0% |
| !! | TAATTGAAATAATTTGAGCT+GGG | + | chr1_3:46810093-46810112 | Msa0121230:intron | 20.0% |
| !! | CATTCTATTATTAATAGCTT+TGG | + | chr1_3:46810602-46810621 | Msa0121230:intron | 20.0% |
| !!! | TTTTTGAATACCTTGTTTAA+TGG | - | chr1_3:46810947-46810966 | None:intergenic | 20.0% |
| !! | ATGAAGTGACAAAAATATTT+CGG | + | chr1_3:46811001-46811020 | Msa0121230:intron | 20.0% |
| !! | TAAATCTGTCACTAAAATTA+GGG | - | chr1_3:46811139-46811158 | None:intergenic | 20.0% |
| !!! | AAGTCGTTTAAAATAATGTA+AGG | + | chr1_3:46811273-46811292 | Msa0121230:intron | 20.0% |
| !! | TATTAAAATTCTGTTATGTG+TGG | - | chr1_3:46811345-46811364 | None:intergenic | 20.0% |
| !! | CTTTCATTATTCAAAGTTAA+AGG | - | chr1_3:46811369-46811388 | None:intergenic | 20.0% |
| !! | CTACTTTCAAATATTACAAA+AGG | + | chr1_3:46811543-46811562 | Msa0121230:intron | 20.0% |
| !! | TCATCTATCAATAATTCAAT+TGG | - | chr1_3:46811591-46811610 | None:intergenic | 20.0% |
| !!! | ATCATGAAATTTGTTTTAAC+AGG | + | chr1_3:46811715-46811734 | Msa0121230:intron | 20.0% |
| ! | ATCTCTTTCACAAATATTTC+TGG | - | chr1_3:46810029-46810048 | None:intergenic | 25.0% |
| ! | AATTGTTGAAAACAGCTTAT+TGG | + | chr1_3:46810272-46810291 | Msa0121230:intron | 25.0% |
| !!! | CTAATTTATAAGGTGTTGAT+TGG | + | chr1_3:46810386-46810405 | Msa0121230:intron | 25.0% |
| ! | GCATCTTAAGTAAAACTTAT+AGG | - | chr1_3:46810573-46810592 | None:intergenic | 25.0% |
| !!! | ATTTGTAGAGTTTTTTACCT+GGG | - | chr1_3:46810774-46810793 | None:intergenic | 25.0% |
| ! | TCATAAATCGATCTTTAAAC+CGG | - | chr1_3:46811096-46811115 | None:intergenic | 25.0% |
| ! | CTAAATCTGTCACTAAAATT+AGG | - | chr1_3:46811140-46811159 | None:intergenic | 25.0% |
| ! | ATCTAAATCTATTGCTAACT+TGG | + | chr1_3:46811183-46811202 | Msa0121230:intron | 25.0% |
| ! | TCTAAAGAAAAGTTTAAGGA+AGG | - | chr1_3:46811249-46811268 | None:intergenic | 25.0% |
| !! | GAACTCTAAAGAAAAGTTTA+AGG | - | chr1_3:46811253-46811272 | None:intergenic | 25.0% |
| !! | TCAATAATTCAATTGGTTCA+AGG | - | chr1_3:46811584-46811603 | None:intergenic | 25.0% |
| ! | TGTTAAGACTTCATATTATG+TGG | + | chr1_3:46811907-46811926 | Msa0121230:three_prime_UTR | 25.0% |
| ! | AAATAGAACATCATTGACAA+AGG | - | chr1_3:46811939-46811958 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTGTTCAAGTGT+TGG | + | chr1_3:46811983-46812002 | Msa0121230:three_prime_UTR | 25.0% |
| ! | TGTGTAGAGAGAGAATTTTA+TGG | - | chr1_3:46809138-46809157 | None:intergenic | 30.0% |
| ATACATAGTCACATAATTCG+CGG | + | chr1_3:46809205-46809224 | Msa0121230:intron | 30.0% | |
| GAAACTTGGTAGAAGAAATT+AGG | - | chr1_3:46809386-46809405 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTCAACCAATCAG+CGG | + | chr1_3:46809489-46809508 | Msa0121230:intron | 30.0% |
| CACATAATTCGTGTAATCAA+GGG | - | chr1_3:46809608-46809627 | None:intergenic | 30.0% | |
| TCACATAATTCGTGTAATCA+AGG | - | chr1_3:46809609-46809628 | None:intergenic | 30.0% | |
| TTACACGAATTATGTGACTA+TGG | + | chr1_3:46809612-46809631 | Msa0121230:intron | 30.0% | |
| CTATGGTTCAATATTCTAGT+TGG | + | chr1_3:46809629-46809648 | Msa0121230:intron | 30.0% | |
| CAATACAAAGGTGACTAAAA+AGG | + | chr1_3:46809733-46809752 | Msa0121230:five_prime_UTR | 30.0% | |
| CTCAAATATGTCAATCCAAT+CGG | + | chr1_3:46810360-46810379 | Msa0121230:intron | 30.0% | |
| CTTATAAATTAGAGTCCGAT+TGG | - | chr1_3:46810378-46810397 | None:intergenic | 30.0% | |
| CAATCGGACTCTAATTTATA+AGG | + | chr1_3:46810376-46810395 | Msa0121230:intron | 30.0% | |
| !!! | ATAAGTGACATAGTGGATTT+TGG | - | chr1_3:46810502-46810521 | None:intergenic | 30.0% |
| !! | ATTAATAGCTTTGGTGATAG+AGG | + | chr1_3:46810611-46810630 | Msa0121230:intron | 30.0% |
| TACATCATATCCATTCTCAA+AGG | + | chr1_3:46810721-46810740 | Msa0121230:CDS | 30.0% | |
| !!! | GATTTGTAGAGTTTTTTACC+TGG | - | chr1_3:46810775-46810794 | None:intergenic | 30.0% |
| AAACCTGAAGGATAAAGATT+GGG | - | chr1_3:46810844-46810863 | None:intergenic | 30.0% | |
| TAAACCTGAAGGATAAAGAT+TGG | - | chr1_3:46810845-46810864 | None:intergenic | 30.0% | |
| AATTTACTTCGATGAAAAGC+TGG | + | chr1_3:46811027-46811046 | Msa0121230:intron | 30.0% | |
| ATTAGGGAGTAATGATGTAT+AGG | - | chr1_3:46811123-46811142 | None:intergenic | 30.0% | |
| ! | TAAAGCATTTCTCTCCAAGT+TGG | + | chr1_3:46809101-46809120 | Msa0121230:five_prime_UTR | 35.0% |
| ! | GTAGAGAGAGAATTTTATGG+AGG | - | chr1_3:46809135-46809154 | None:intergenic | 35.0% |
| AGAAGAATTCGGTACGTATA+GGG | + | chr1_3:46809275-46809294 | Msa0121230:intron | 35.0% | |
| ! | CGTATAGGGGTATACAAATT+CGG | + | chr1_3:46809289-46809308 | Msa0121230:intron | 35.0% |
| AGAAGAACATGAACAAAGAG+TGG | - | chr1_3:46809416-46809435 | None:intergenic | 35.0% | |
| AAATGAATCACCATGAGTTG+AGG | - | chr1_3:46809447-46809466 | None:intergenic | 35.0% | |
| !! | CAACAGTAACAGTCTTGTTA+AGG | - | chr1_3:46809658-46809677 | None:intergenic | 35.0% |
| ! | TGGACTAGACATCAATACAA+AGG | + | chr1_3:46809721-46809740 | Msa0121230:five_prime_UTR | 35.0% |
| GGTGAGTAGAGAATGAAAAT+TGG | + | chr1_3:46809788-46809807 | Msa0121230:intron | 35.0% | |
| !! | TAATTCAGTTTTCAAGCCTG+TGG | + | chr1_3:46809852-46809871 | Msa0121230:intron | 35.0% |
| CTACATCTTCTTGCTAAGTT+TGG | + | chr1_3:46809900-46809919 | Msa0121230:five_prime_UTR | 35.0% | |
| ! | TAGTTGCATTGGCAAGTTAT+GGG | - | chr1_3:46809938-46809957 | None:intergenic | 35.0% |
| CTGGTAAATTCACCCAAAAA+TGG | - | chr1_3:46810010-46810029 | None:intergenic | 35.0% | |
| !! | GTTGTTTTCATAAGCTGTCT+TGG | + | chr1_3:46810235-46810254 | Msa0121230:intron | 35.0% |
| CGAGAATTCTTCATTATACG+CGG | + | chr1_3:46810433-46810452 | Msa0121230:intron | 35.0% | |
| CCAGATAATAAGTGACATAG+TGG | - | chr1_3:46810509-46810528 | None:intergenic | 35.0% | |
| ! | CCACTATGTCACTTATTATC+TGG | + | chr1_3:46810506-46810525 | Msa0121230:intron | 35.0% |
| TCACTTATTATCTGGTCACT+CGG | + | chr1_3:46810514-46810533 | Msa0121230:intron | 35.0% | |
| AGAACATTGTGGAGATAAAG+AGG | - | chr1_3:46810659-46810678 | None:intergenic | 35.0% | |
| TTATCTCCACAATGTTCTTG+AGG | + | chr1_3:46810661-46810680 | Msa0121230:CDS | 35.0% | |
| ! | TATGATGCTTCCTTTGAGAA+TGG | - | chr1_3:46810734-46810753 | None:intergenic | 35.0% |
| TAACCCAATCTTTATCCTTC+AGG | + | chr1_3:46810838-46810857 | Msa0121230:intron | 35.0% | |
| CAAAATCAAGGTAAACCTGA+AGG | - | chr1_3:46810856-46810875 | None:intergenic | 35.0% | |
| !! | CTTCAGGTTTACCTTGATTT+TGG | + | chr1_3:46810854-46810873 | Msa0121230:intron | 35.0% |
| ATTCCAAAACTTAGTGTGCA+TGG | + | chr1_3:46810884-46810903 | Msa0121230:intron | 35.0% | |
| AAGAGTAAACTTTGCATTGC+AGG | + | chr1_3:46811414-46811433 | Msa0121230:intron | 35.0% | |
| TACCTAAGTAGAAGAGTTCA+GGG | - | chr1_3:46811468-46811487 | None:intergenic | 35.0% | |
| ATACCTAAGTAGAAGAGTTC+AGG | - | chr1_3:46811469-46811488 | None:intergenic | 35.0% | |
| TCAGTTTCAGTTACTGTGAA+AGG | + | chr1_3:46812009-46812028 | Msa0121230:three_prime_UTR | 35.0% | |
| TGGAGGATATGATTCCAACT+TGG | - | chr1_3:46809118-46809137 | None:intergenic | 40.0% | |
| ! | ACATAATTCGCGGTTTGTTC+CGG | + | chr1_3:46809215-46809234 | Msa0121230:intron | 40.0% |
| GAGAAGAATTCGGTACGTAT+AGG | + | chr1_3:46809274-46809293 | Msa0121230:intron | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | + | chr1_3:46809276-46809295 | Msa0121230:intron | 40.0% | |
| TATACAAATTCGGTACGCTC+CGG | + | chr1_3:46809299-46809318 | Msa0121230:intron | 40.0% | |
| GCATTATTACTGCTACGAAC+CGG | - | chr1_3:46809321-46809340 | None:intergenic | 40.0% | |
| ATCAAGGGAGAATTGCGAAT+TGG | - | chr1_3:46809593-46809612 | None:intergenic | 40.0% | |
| AACAAGACTGTTACTGTTGC+TGG | + | chr1_3:46809659-46809678 | Msa0121230:intron | 40.0% | |
| AGCATAGCAGCATACTACTT+TGG | + | chr1_3:46809701-46809720 | Msa0121230:five_prime_UTR | 40.0% | |
| ACTAAAAAGGAAGCTGAGGA+GGG | + | chr1_3:46809746-46809765 | Msa0121230:five_prime_UTR | 40.0% | |
| !! | TTTTTGTTTGCTACCACCAC+AGG | - | chr1_3:46809871-46809890 | None:intergenic | 40.0% |
| GGTGGTAGCAAACAAAAATC+TGG | + | chr1_3:46809873-46809892 | Msa0121230:five_prime_UTR | 40.0% | |
| ! | GTAGTTGCATTGGCAAGTTA+TGG | - | chr1_3:46809939-46809958 | None:intergenic | 40.0% |
| TCTTGTCCTCAAGAACATTG+TGG | - | chr1_3:46810670-46810689 | None:intergenic | 40.0% | |
| ACAATGTTCTTGAGGACAAG+AGG | + | chr1_3:46810669-46810688 | Msa0121230:CDS | 40.0% | |
| !! | CTCAAAGGAAGCATCATATC+TGG | + | chr1_3:46810736-46810755 | Msa0121230:CDS | 40.0% |
| !!! | GGTTTACCTTGATTTTGGCT+TGG | + | chr1_3:46810859-46810878 | Msa0121230:intron | 40.0% |
| GAATAGCCAAGCCAAAATCA+AGG | - | chr1_3:46810868-46810887 | None:intergenic | 40.0% | |
| ! | ATGCCATGCACACTAAGTTT+TGG | - | chr1_3:46810890-46810909 | None:intergenic | 40.0% |
| AAAACTTAGTGTGCATGGCA+TGG | + | chr1_3:46810889-46810908 | Msa0121230:intron | 40.0% | |
| AGAGCAAGCTCCATTAAACA+AGG | + | chr1_3:46810934-46810953 | Msa0121230:intron | 40.0% | |
| TCCCTAAATGAGTTTGTGAC+CGG | + | chr1_3:46811074-46811093 | Msa0121230:intron | 40.0% | |
| ACCGGTCACAAACTCATTTA+GGG | - | chr1_3:46811078-46811097 | None:intergenic | 40.0% | |
| AACCGGTCACAAACTCATTT+AGG | - | chr1_3:46811079-46811098 | None:intergenic | 40.0% | |
| TTCCCTGAACTCTTCTACTT+AGG | + | chr1_3:46811463-46811482 | Msa0121230:CDS | 40.0% | |
| AATGCATGAATCACGCAGAA+CGG | - | chr1_3:46811770-46811789 | None:intergenic | 40.0% | |
| TACGCGACAGGAGAAGAATT+CGG | + | chr1_3:46809264-46809283 | Msa0121230:intron | 45.0% | |
| AGAGTGGAGAGTGAGAAACT+TGG | - | chr1_3:46809400-46809419 | None:intergenic | 45.0% | |
| AAAGCATGGTTACCGCTGAT+TGG | - | chr1_3:46809504-46809523 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | + | chr1_3:46809503-46809522 | Msa0121230:intron | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | + | chr1_3:46809512-46809531 | Msa0121230:intron | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | - | chr1_3:46809564-46809583 | None:intergenic | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | - | chr1_3:46809573-46809592 | None:intergenic | 45.0% |
| ACTGTTGCTGGTGAGATAGT+TGG | + | chr1_3:46809671-46809690 | Msa0121230:five_prime_UTR | 45.0% | |
| GGTGACTAAAAAGGAAGCTG+AGG | + | chr1_3:46809742-46809761 | Msa0121230:five_prime_UTR | 45.0% | |
| GACTAAAAAGGAAGCTGAGG+AGG | + | chr1_3:46809745-46809764 | Msa0121230:five_prime_UTR | 45.0% | |
| !! | TTCAGTTTTCAAGCCTGTGG+TGG | + | chr1_3:46809855-46809874 | Msa0121230:intron | 45.0% |
| TTGCCAATGCAACTACACAC+AGG | + | chr1_3:46809943-46809962 | Msa0121230:exon | 45.0% | |
| TGCCAATGCAACTACACACA+GGG | + | chr1_3:46809944-46809963 | Msa0121230:exon | 45.0% | |
| TACCCTGTGTGTAGTTGCAT+TGG | - | chr1_3:46809949-46809968 | None:intergenic | 45.0% | |
| TGCAACTACACACAGGGTAA+TGG | + | chr1_3:46809950-46809969 | Msa0121230:intron | 45.0% | |
| TTCAGGGAATGCATAGGCAT+CGG | - | chr1_3:46811452-46811471 | None:intergenic | 45.0% | |
| GAAGAGTTCAGGGAATGCAT+AGG | - | chr1_3:46811458-46811477 | None:intergenic | 45.0% | |
| CTGCGTGATTCATGCATTGA+CGG | + | chr1_3:46811772-46811791 | Msa0121230:CDS | 45.0% | |
| CTCACTCAGTCCTCAACTCA+TGG | + | chr1_3:46809434-46809453 | Msa0121230:intron | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | - | chr1_3:46809518-46809537 | None:intergenic | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | - | chr1_3:46809556-46809575 | None:intergenic | 50.0% | |
| ! | TACGCCGAAGTACCCGAATT+CGG | + | chr1_3:46809557-46809576 | Msa0121230:intron | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | - | chr1_3:46809572-46809591 | None:intergenic | 50.0% |
| TTTGCAACTTCCACAGCCTC+CGG | - | chr1_3:46811811-46811830 | None:intergenic | 50.0% | |
| GTTTGTTCCGGTACGCGGTA+CGG | + | chr1_3:46809227-46809246 | Msa0121230:intron | 55.0% | |
| TTTGTTCCGGTACGCGGTAC+GGG | + | chr1_3:46809228-46809247 | Msa0121230:intron | 55.0% | |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | + | chr1_3:46809520-46809539 | Msa0121230:intron | 55.0% |
| GGTCTTCAGCAGGTGTTAGC+TGG | + | chr1_3:46809767-46809786 | Msa0121230:five_prime_UTR | 55.0% | |
| ! | TCTGGCTTCTCTGTACTCCC+AGG | + | chr1_3:46810754-46810773 | Msa0121230:CDS | 55.0% |
| TGACGGCGATCTCACTGTTC+CGG | + | chr1_3:46811789-46811808 | Msa0121230:CDS | 55.0% | |
| ! | TCGCGGTTTGTTCCGGTACG+CGG | + | chr1_3:46809222-46809241 | Msa0121230:intron | 60.0% |
| AGCTGAGGAGGGTCTTCAGC+AGG | + | chr1_3:46809757-46809776 | Msa0121230:five_prime_UTR | 60.0% | |
| TCTCACTGTTCCGGAGGCTG+TGG | + | chr1_3:46811798-46811817 | Msa0121230:CDS | 60.0% | |
| TCCGGTACGCGGTACGGGTA+CGG | + | chr1_3:46809233-46809252 | Msa0121230:intron | 65.0% | |
| CGGCGATCTCACTGTTCCGG+AGG | + | chr1_3:46811792-46811811 | Msa0121230:CDS | 65.0% | |
| CCCGTACCCGTACCGCGTAC+CGG | - | chr1_3:46809237-46809256 | None:intergenic | 70.0% | |
| CCGGTACGCGGTACGGGTAC+GGG | + | chr1_3:46809234-46809253 | Msa0121230:intron | 70.0% | |
| GCGGTACGGGTACGGGTTCG+CGG | + | chr1_3:46809241-46809260 | Msa0121230:intron | 70.0% | |
| ACGGGTTCGCGGTACGCGAC+AGG | + | chr1_3:46809252-46809271 | Msa0121230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 46809086 | 46812057 | 46809086 | ID=Msa0121230;Name=Msa0121230 |
| chr1_3 | mRNA | 46809086 | 46812057 | 46809086 | ID=Msa0121230-mRNA-1;Parent=Msa0121230;Name=Msa0121230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=251|0.8|1|1|0.8|0.66|6|178|121 |
| chr1_3 | exon | 46809086 | 46809122 | 46809086 | ID=Msa0121230-mRNA-1:exon:14114;Parent=Msa0121230-mRNA-1 |
| chr1_3 | exon | 46809664 | 46809788 | 46809664 | ID=Msa0121230-mRNA-1:exon:14115;Parent=Msa0121230-mRNA-1 |
| chr1_3 | exon | 46809860 | 46809965 | 46809860 | ID=Msa0121230-mRNA-1:exon:14116;Parent=Msa0121230-mRNA-1 |
| chr1_3 | exon | 46810619 | 46810775 | 46810619 | ID=Msa0121230-mRNA-1:exon:14117;Parent=Msa0121230-mRNA-1 |
| chr1_3 | exon | 46811436 | 46811484 | 46811436 | ID=Msa0121230-mRNA-1:exon:14118;Parent=Msa0121230-mRNA-1 |
| chr1_3 | exon | 46811737 | 46812057 | 46811737 | ID=Msa0121230-mRNA-1:exon:14119;Parent=Msa0121230-mRNA-1 |
| chr1_3 | five_prime_UTR | 46809086 | 46809122 | 46809086 | ID=Msa0121230-mRNA-1:five_prime_utr;Parent=Msa0121230-mRNA-1 |
| chr1_3 | five_prime_UTR | 46809664 | 46809788 | 46809664 | ID=Msa0121230-mRNA-1:five_prime_utr;Parent=Msa0121230-mRNA-1 |
| chr1_3 | five_prime_UTR | 46809860 | 46809948 | 46809860 | ID=Msa0121230-mRNA-1:five_prime_utr;Parent=Msa0121230-mRNA-1 |
| chr1_3 | CDS | 46809949 | 46809965 | 46809949 | ID=Msa0121230-mRNA-1:cds;Parent=Msa0121230-mRNA-1 |
| chr1_3 | CDS | 46810619 | 46810775 | 46810619 | ID=Msa0121230-mRNA-1:cds;Parent=Msa0121230-mRNA-1 |
| chr1_3 | CDS | 46811436 | 46811484 | 46811436 | ID=Msa0121230-mRNA-1:cds;Parent=Msa0121230-mRNA-1 |
| chr1_3 | CDS | 46811737 | 46811879 | 46811737 | ID=Msa0121230-mRNA-1:cds;Parent=Msa0121230-mRNA-1 |
| chr1_3 | three_prime_UTR | 46811880 | 46812057 | 46811880 | ID=Msa0121230-mRNA-1:three_prime_utr;Parent=Msa0121230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
