Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587120 | XP_003604369.1 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587120 | G7JGX3 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005380 | Msa0587120 | 0.830242 | 3.279395e-55 | -8.615850e-47 |
| Msa0026630 | Msa0587120 | 0.800759 | 1.239372e-48 | -8.615850e-47 |
| Msa0033840 | Msa0587120 | -0.813087 | 3.057350e-51 | -8.615850e-47 |
| Msa0077370 | Msa0587120 | 0.817138 | 3.853037e-52 | -8.615850e-47 |
| Msa0090510 | Msa0587120 | 0.807763 | 4.312506e-50 | -8.615850e-47 |
| Msa0094710 | Msa0587120 | 0.811583 | 6.511925e-51 | -8.615850e-47 |
| Msa0095940 | Msa0587120 | 0.810504 | 1.115566e-50 | -8.615850e-47 |
| Msa0108760 | Msa0587120 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa0121230 | Msa0587120 | 0.800595 | 1.338593e-48 | -8.615850e-47 |
| Msa0123000 | Msa0587120 | -0.824710 | 6.963624e-54 | -8.615850e-47 |
| Msa0168310 | Msa0587120 | 0.802246 | 6.143763e-49 | -8.615850e-47 |
| Msa0187590 | Msa0587120 | -0.803876 | 2.827597e-49 | -8.615850e-47 |
| Msa0220400 | Msa0587120 | -0.818699 | 1.710699e-52 | -8.615850e-47 |
| Msa0234410 | Msa0587120 | -0.824477 | 7.903544e-54 | -8.615850e-47 |
| Msa0403470 | Msa0587120 | -0.810947 | 8.947560e-51 | -8.615850e-47 |
| Msa0470880 | Msa0587120 | 0.808185 | 3.506336e-50 | -8.615850e-47 |
| Msa0282780 | Msa0587120 | 0.812307 | 4.528421e-51 | -8.615850e-47 |
| Msa0287870 | Msa0587120 | 0.807143 | 5.836833e-50 | -8.615850e-47 |
| Msa0527540 | Msa0587120 | 0.830185 | 3.386126e-55 | -8.615850e-47 |
| Msa0529000 | Msa0587120 | 0.813406 | 2.601148e-51 | -8.615850e-47 |
| Msa0530560 | Msa0587120 | 0.824739 | 6.856002e-54 | -8.615850e-47 |
| Msa0530730 | Msa0587120 | 0.839015 | 2.040341e-57 | -8.615850e-47 |
| Msa0544160 | Msa0587120 | 0.819405 | 1.181562e-52 | -8.615850e-47 |
| Msa0545050 | Msa0587120 | 0.819815 | 9.527004e-53 | -8.615850e-47 |
| Msa0559650 | Msa0587120 | -0.806108 | 9.654520e-50 | -8.615850e-47 |
| Msa0574930 | Msa0587120 | 0.801761 | 7.728570e-49 | -8.615850e-47 |
| Msa0587120 | Msa0592330 | 0.810271 | 1.252226e-50 | -8.615850e-47 |
| Msa0587120 | Msa0600590 | 0.809513 | 1.822915e-50 | -8.615850e-47 |
| Msa0587120 | Msa0604290 | 0.804080 | 2.564496e-49 | -8.615850e-47 |
| Msa0587120 | Msa0613420 | 0.822596 | 2.177051e-53 | -8.615850e-47 |
| Msa0587120 | Msa0637930 | -0.838318 | 3.087188e-57 | -8.615850e-47 |
| Msa0587120 | Msa0641130 | 0.816735 | 4.743525e-52 | -8.615850e-47 |
| Msa0587120 | Msa0645530 | 0.801976 | 6.984342e-49 | -8.615850e-47 |
| Msa0587120 | Msa0677530 | 0.812413 | 4.293254e-51 | -8.615850e-47 |
| Msa0587120 | Msa0685090 | 0.808151 | 3.566135e-50 | -8.615850e-47 |
| Msa0587120 | Msa0703810 | 0.814201 | 1.738209e-51 | -8.615850e-47 |
| Msa0587120 | Msa0766140 | 0.851411 | 9.035056e-61 | -8.615850e-47 |
| Msa0587120 | Msa0795340 | 0.813842 | 2.085525e-51 | -8.615850e-47 |
| Msa0587120 | Msa0833270 | 0.810741 | 9.913696e-51 | -8.615850e-47 |
| Msa0587120 | Msa0855870 | 0.804642 | 1.958709e-49 | -8.615850e-47 |
| Msa0587120 | Msa0943970 | 0.814831 | 1.260940e-51 | -8.615850e-47 |
| Msa0587120 | Msa0944020 | 0.810993 | 8.742020e-51 | -8.615850e-47 |
| Msa0587120 | Msa1011250 | 0.816307 | 5.916272e-52 | -8.615850e-47 |
| Msa0587120 | Msa1184230 | 0.802793 | 4.739720e-49 | -8.615850e-47 |
| Msa0587120 | Msa1184690 | 0.809331 | 1.995206e-50 | -8.615850e-47 |
| Msa0587120 | Msa1188350 | 0.800387 | 1.475811e-48 | -8.615850e-47 |
| Msa0587120 | Msa1190100 | -0.827784 | 1.291810e-54 | -8.615850e-47 |
| Msa0587120 | Msa1206400 | -0.802905 | 4.493672e-49 | -8.615850e-47 |
| Msa0587120 | Msa1206450 | -0.808865 | 2.510561e-50 | -8.615850e-47 |
| Msa0587120 | Msa1208450 | -0.821367 | 4.191822e-53 | -8.615850e-47 |
| Msa0587120 | Msa1208990 | 0.820374 | 7.095856e-53 | -8.615850e-47 |
| Msa0587120 | Msa1213890 | 0.800388 | 1.475201e-48 | -8.615850e-47 |
| Msa0587120 | Msa1236110 | -0.806168 | 9.375722e-50 | -8.615850e-47 |
| Msa0587120 | Msa1238600 | 0.821575 | 3.753331e-53 | -8.615850e-47 |
| Msa0587120 | Msa1238660 | 0.840756 | 7.179092e-58 | -8.615850e-47 |
| Msa0587120 | Msa1271130 | 0.815495 | 8.980325e-52 | -8.615850e-47 |
| Msa0587120 | Msa1272010 | 0.826548 | 2.553135e-54 | -8.615850e-47 |
| Msa0587120 | Msa1319560 | 0.822077 | 2.872707e-53 | -8.615850e-47 |
| Msa0587120 | Msa1325410 | -0.842078 | 3.220739e-58 | -8.615850e-47 |
| Msa0587120 | Msa1364350 | -0.828470 | 8.833921e-55 | -8.615850e-47 |
| Msa0587120 | Msa1407760 | 0.803709 | 3.062973e-49 | -8.615850e-47 |
| Msa0587120 | Msa1419840 | 0.807280 | 5.458796e-50 | -8.615850e-47 |
| Msa0587120 | Msa1442920 | 0.803404 | 3.543318e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587120 | MtrunA17_Chr4g0003181 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Msa0587120 | MtrunA17_Chr2g0333211 | 67.803 | 264 | 76 | 6 | 1 | 261 | 1 | 258 | 1.04e-115 | 332 |
| Msa0587120 | MtrunA17_Chr8g0379111 | 87.755 | 49 | 6 | 0 | 182 | 230 | 1 | 49 | 3.66e-23 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587120 | AT5G32440.1 | 48.699 | 269 | 128 | 4 | 1 | 264 | 1 | 264 | 9.33e-70 | 216 |
| Msa0587120 | AT5G32440.3 | 48.327 | 269 | 130 | 3 | 1 | 264 | 1 | 265 | 2.22e-68 | 213 |
| Msa0587120 | AT1G80040.1 | 40.377 | 265 | 140 | 4 | 1 | 264 | 1 | 248 | 8.35e-56 | 180 |
| Msa0587120 | AT1G80040.4 | 45.324 | 139 | 76 | 0 | 126 | 264 | 37 | 175 | 6.79e-40 | 136 |
| Msa0587120 | AT5G32440.2 | 46.561 | 189 | 91 | 4 | 1 | 184 | 1 | 184 | 9.09e-32 | 116 |
| Msa0587120 | AT5G02510.2 | 32.271 | 251 | 140 | 6 | 20 | 264 | 27 | 253 | 1.23e-30 | 115 |
| Msa0587120 | AT1G80040.2 | 37.097 | 186 | 99 | 4 | 1 | 185 | 1 | 169 | 8.75e-27 | 103 |
| Msa0587120 | AT5G02510.1 | 39.568 | 139 | 77 | 3 | 128 | 264 | 46 | 179 | 1.33e-26 | 102 |
| Msa0587120 | AT5G02510.3 | 39.568 | 139 | 77 | 3 | 128 | 264 | 55 | 188 | 2.22e-26 | 102 |
| Msa0587120 | AT1G80040.3 | 35.025 | 197 | 99 | 5 | 1 | 185 | 1 | 180 | 1.08e-23 | 95.1 |
Find 94 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGAGAAATTGGGGATTT+TGG | 0.141443 | 4_2:+8618207 | None:intergenic |
| GTTAGGGTTTAGAGAGAAAT+TGG | 0.151032 | 4_2:+8618198 | None:intergenic |
| AATTGAGATTGGATGAAATT+AGG | 0.168305 | 4_2:+8618175 | None:intergenic |
| ACTAGTTGCTACCTTTATTA+TGG | 0.218788 | 4_2:+8614208 | None:intergenic |
| GGTGCTGCAGGTGGGAATTC+TGG | 0.230864 | 4_2:-8616483 | Msa0587120:CDS |
| CTAGATCGTTGTCACATTCT+TGG | 0.233336 | 4_2:+8616541 | None:intergenic |
| GGAATAATAGGCAATATATA+TGG | 0.270317 | 4_2:+8614020 | None:intergenic |
| ATTGAGATTGGATGAAATTA+GGG | 0.273225 | 4_2:+8618176 | None:intergenic |
| ACAAATAAAAGCGGAATAAT+AGG | 0.284748 | 4_2:+8614008 | None:intergenic |
| GAGGAAAAGGAGGAGGAAAT+TGG | 0.306131 | 4_2:-8618117 | Msa0587120:five_prime_UTR |
| GAATCTGTCAAATTCTATAT+CGG | 0.316147 | 4_2:+8614060 | None:intergenic |
| ATCTATATTCCAATTGAGAT+TGG | 0.328461 | 4_2:+8618164 | None:intergenic |
| TGATTTAGTTAGAAGATATC+AGG | 0.353022 | 4_2:+8614243 | None:intergenic |
| GATATTATCACTGTTACTAT+TGG | 0.356109 | 4_2:-8613947 | Msa0587120:three_prime_UTR |
| GCAAATCGAAGTGCTGATTA+AGG | 0.357388 | 4_2:-8615096 | Msa0587120:CDS |
| ATATATATGGGAATGACTTA+TGG | 0.367443 | 4_2:+8614033 | None:intergenic |
| CTTCTCCTCCTTTATCTAAG+AGG | 0.373616 | 4_2:-8618002 | Msa0587120:CDS |
| CCGTAATCTCTTCCCTCATA+TGG | 0.383614 | 4_2:-8617914 | Msa0587120:CDS |
| TAATTTCATCCAATCTCAAT+TGG | 0.390157 | 4_2:-8618173 | Msa0587120:five_prime_UTR |
| ATTACCAATTGGTCCATATG+AGG | 0.390217 | 4_2:+8617901 | None:intergenic |
| GATTGGATGAAATTAGGGTT+AGG | 0.396144 | 4_2:+8618181 | None:intergenic |
| CACCCAAGTAAAGCTCATTC+AGG | 0.400453 | 4_2:+8616502 | None:intergenic |
| GAGCCTGAATGAGCTTTACT+TGG | 0.410524 | 4_2:-8616505 | Msa0587120:CDS |
| CTTCCCTCATATGGACCAAT+TGG | 0.414254 | 4_2:-8617905 | Msa0587120:intron |
| GTTATAGTTTGTGTAGCTTC+TGG | 0.415440 | 4_2:-8614136 | Msa0587120:three_prime_UTR |
| CCATATGAGGGAAGAGATTA+CGG | 0.421515 | 4_2:+8617914 | None:intergenic |
| CAACGAAGCCTCTTAGATAA+AGG | 0.428199 | 4_2:+8617994 | None:intergenic |
| GAGCTTTACTTGGGTGCTGC+AGG | 0.428755 | 4_2:-8616495 | Msa0587120:CDS |
| ATTGGATGAAATTAGGGTTA+GGG | 0.430262 | 4_2:+8618182 | None:intergenic |
| ATCCATTCGGCTCCATCTGC+AGG | 0.436105 | 4_2:+8615764 | None:intergenic |
| TTAGGGTTTAGAGAGAAATT+GGG | 0.439866 | 4_2:+8618199 | None:intergenic |
| CGAGAAATCAATCAGTGAAC+GGG | 0.443703 | 4_2:-8615660 | Msa0587120:CDS |
| CAACAGAGCAACGGATTTCA+AGG | 0.451603 | 4_2:-8614276 | Msa0587120:CDS |
| ACAGATGAATAACTATGCTT+TGG | 0.452596 | 4_2:-8614319 | Msa0587120:intron |
| TCAAAGAGAGAAGGAATAGT+TGG | 0.466372 | 4_2:+8617943 | None:intergenic |
| AATCAACGAAGAAGAGGAAA+AGG | 0.466917 | 4_2:-8618130 | Msa0587120:five_prime_UTR |
| TGTGTAGAATGCCATAATAA+AGG | 0.468569 | 4_2:-8614219 | Msa0587120:three_prime_UTR |
| CAGTGAACGGGCAAGGGCTG+AGG | 0.469163 | 4_2:-8615648 | Msa0587120:CDS |
| AATCTGTCAAATTCTATATC+GGG | 0.476628 | 4_2:+8614061 | None:intergenic |
| TTTGGCAATGCATTTGAAGC+AGG | 0.476717 | 4_2:-8614301 | Msa0587120:CDS |
| CTTTACTTGGGTGCTGCAGG+TGG | 0.479491 | 4_2:-8616492 | Msa0587120:CDS |
| GGAATAGTTGGAAAACGAAT+CGG | 0.490884 | 4_2:+8617955 | None:intergenic |
| AGCCCGTGCTGCTAGAATGC+TGG | 0.490982 | 4_2:-8615690 | Msa0587120:CDS |
| TGGTGATGGTGGAAAAGAGA+AGG | 0.495063 | 4_2:+8618227 | None:intergenic |
| TCAGGAAAATTTGATGCTGA+AGG | 0.495369 | 4_2:-8615120 | Msa0587120:intron |
| CAAATTCTATATCGGGTTGA+CGG | 0.499651 | 4_2:+8614068 | None:intergenic |
| ATTGCAGCATTTGAAGCAGT+TGG | 0.502947 | 4_2:-8615000 | Msa0587120:CDS |
| AAATTCTATATCGGGTTGAC+GGG | 0.504727 | 4_2:+8614069 | None:intergenic |
| CTCTTAGATAAAGGAGGAGA+AGG | 0.510276 | 4_2:+8618003 | None:intergenic |
| GAATAATAGGCAATATATAT+GGG | 0.510297 | 4_2:+8614021 | None:intergenic |
| AAGAGAAGGGTTGAAAATTG+AGG | 0.511627 | 4_2:+8618241 | None:intergenic |
| CTCCAGCATTCTAGCAGCAC+GGG | 0.511638 | 4_2:+8615688 | None:intergenic |
| TTGAACAGCCTTCCTGCAGA+TGG | 0.513895 | 4_2:-8615776 | Msa0587120:CDS |
| AATCAGAAAGACGCTCGTGC+TGG | 0.519052 | 4_2:+8615042 | None:intergenic |
| AAACTGATATTGAACATTGT+GGG | 0.521362 | 4_2:+8613970 | None:intergenic |
| CAAGAGTTCTGATCTGCTCC+TGG | 0.529738 | 4_2:+8614967 | None:intergenic |
| ATTGGAATATAGATCGAAGA+AGG | 0.532334 | 4_2:-8618155 | Msa0587120:five_prime_UTR |
| ATCAATCAGTGAACGGGCAA+GGG | 0.532900 | 4_2:-8615654 | Msa0587120:CDS |
| AATCAATCAGTGAACGGGCA+AGG | 0.533202 | 4_2:-8615655 | Msa0587120:CDS |
| GCAGTTGGCGTCTCAATACC+AGG | 0.534548 | 4_2:-8614985 | Msa0587120:CDS |
| TAGGGTTTAGAGAGAAATTG+GGG | 0.537905 | 4_2:+8618200 | None:intergenic |
| GCAGGTAAATTGGAGAATGA+TGG | 0.544065 | 4_2:-8615830 | Msa0587120:intron |
| TGACGGGATAGAATCACTCT+TGG | 0.545475 | 4_2:+8614085 | None:intergenic |
| AAGGAAAATCAACGAAGAAG+AGG | 0.549122 | 4_2:-8618136 | Msa0587120:five_prime_UTR |
| CAAACTGATATTGAACATTG+TGG | 0.551797 | 4_2:+8613969 | None:intergenic |
| GGTGATGGTGGAAAAGAGAA+GGG | 0.552637 | 4_2:+8618228 | None:intergenic |
| TTACCAATTGGTCCATATGA+GGG | 0.554778 | 4_2:+8617902 | None:intergenic |
| CGAAGAAGAGGAAAAGGAGG+AGG | 0.558785 | 4_2:-8618124 | Msa0587120:five_prime_UTR |
| ATCCACATTGACATCAATCT+CGG | 0.564292 | 4_2:+8616446 | None:intergenic |
| TTTACTTGGGTGCTGCAGGT+GGG | 0.569017 | 4_2:-8616491 | Msa0587120:CDS |
| CAACGAAGAAGAGGAAAAGG+AGG | 0.569382 | 4_2:-8618127 | Msa0587120:five_prime_UTR |
| ATTGATGTCAATGTGGATGC+AGG | 0.578194 | 4_2:-8616441 | Msa0587120:intron |
| TTAGATAAAGGAGGAGAAGG+AGG | 0.578473 | 4_2:+8618006 | None:intergenic |
| CGGAGCTGATCAAAGAGAGA+AGG | 0.579956 | 4_2:+8617934 | None:intergenic |
| CAGGTAAATTGGAGAATGAT+GGG | 0.588643 | 4_2:-8615829 | Msa0587120:CDS |
| AGCCTGAATGAGCTTTACTT+GGG | 0.592859 | 4_2:-8616504 | Msa0587120:CDS |
| TTTAGTTAGAAGATATCAGG+TGG | 0.595119 | 4_2:+8614246 | None:intergenic |
| TCGAGAAATCAATCAGTGAA+CGG | 0.595325 | 4_2:-8615661 | Msa0587120:CDS |
| ACGAATCGGAGAAGTAGAAG+AGG | 0.605128 | 4_2:+8617969 | None:intergenic |
| CCTCCAGCATTCTAGCAGCA+CGG | 0.612473 | 4_2:+8615687 | None:intergenic |
| GGCGACAGATGCTCTTCAGA+AGG | 0.617799 | 4_2:-8615627 | Msa0587120:intron |
| GTAGAGACAACAAATAAAAG+CGG | 0.618569 | 4_2:+8613999 | None:intergenic |
| AAGCAGGCTCAACAGAGCAA+CGG | 0.619847 | 4_2:-8614285 | Msa0587120:CDS |
| ATTCGGCTCCATCTGCAGGA+AGG | 0.623660 | 4_2:+8615768 | None:intergenic |
| CCGTGCTGCTAGAATGCTGG+AGG | 0.628538 | 4_2:-8615687 | Msa0587120:CDS |
| GGCTCTAGCATCATCAACAC+TGG | 0.633203 | 4_2:+8615709 | None:intergenic |
| ACGATGTCTGCTGCTGTGTG+CGG | 0.637537 | 4_2:-8618060 | Msa0587120:CDS |
| GGAGCAGATCAGAACTCTTG+AGG | 0.638754 | 4_2:-8614964 | Msa0587120:intron |
| CGAAGCCTCTTAGATAAAGG+AGG | 0.640265 | 4_2:+8617997 | None:intergenic |
| TTCCTGCAGATGGAGCCGAA+TGG | 0.648905 | 4_2:-8615766 | Msa0587120:CDS |
| AACAGAGCAACGGATTTCAA+GGG | 0.652217 | 4_2:-8614275 | Msa0587120:CDS |
| TCGAATTCGATAGTCAGCAT+CGG | 0.654412 | 4_2:-8618087 | Msa0587120:five_prime_UTR |
| TTAGTTAGAAGATATCAGGT+GGG | 0.665018 | 4_2:+8614247 | None:intergenic |
| ATCCGAGATTGATGTCAATG+TGG | 0.731294 | 4_2:-8616448 | Msa0587120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATGATTTTTTTTTTTTTTT+TGG | - | chr4_2:8614765-8614784 | Msa0587120:intron | 10.0% |
| !!! | TAATTGTTGTTTTTTTAATA+AGG | - | chr4_2:8615309-8615328 | Msa0587120:intron | 10.0% |
| !!! | AATTGTTGTTTTTTTAATAA+GGG | - | chr4_2:8615310-8615329 | Msa0587120:intron | 10.0% |
| !! | AAGTTAAAAATATTAATACA+CGG | + | chr4_2:8615558-8615577 | None:intergenic | 10.0% |
| !!! | TATTAATATTTTTAACTTTC+AGG | - | chr4_2:8615560-8615579 | Msa0587120:intron | 10.0% |
| !!! | GTTTAGTTGTTATTTAATTT+CGG | - | chr4_2:8614723-8614742 | Msa0587120:intron | 15.0% |
| !!! | TTTAGTTGTTATTTAATTTC+GGG | - | chr4_2:8614724-8614743 | Msa0587120:intron | 15.0% |
| !! | GTTTGACAATAATTAAATAA+CGG | - | chr4_2:8615134-8615153 | Msa0587120:intron | 15.0% |
| !! | AGTTAAAAATATTAATACAC+GGG | + | chr4_2:8615557-8615576 | None:intergenic | 15.0% |
| !! | AAAGCAAAATTATTACCAAT+TGG | + | chr4_2:8614253-8614272 | None:intergenic | 20.0% |
| !! | TCAAAATTCAGAAAATGAAA+AGG | + | chr4_2:8614285-8614304 | None:intergenic | 20.0% |
| !! | AGTGTTTAATATTCAAATTG+AGG | - | chr4_2:8614664-8614683 | Msa0587120:intron | 20.0% |
| !!! | TTAGTTGTTATTTAATTTCG+GGG | - | chr4_2:8614725-8614744 | Msa0587120:intron | 20.0% |
| !! | AATAAGGTTATGTTTATGAA+TGG | - | chr4_2:8614915-8614934 | Msa0587120:intron | 20.0% |
| !!! | TTTCATATTTTGCAAAACAA+TGG | - | chr4_2:8615801-8615820 | Msa0587120:CDS | 20.0% |
| !!! | TTTTTTGTGATAAATAGAGA+GGG | + | chr4_2:8615999-8616018 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGATAAATAGAG+AGG | + | chr4_2:8616000-8616019 | None:intergenic | 20.0% |
| !! | CTAAATATGTGTTTATAAGT+GGG | - | chr4_2:8616847-8616866 | Msa0587120:intron | 20.0% |
| !! | TAAATATGTGTTTATAAGTG+GGG | - | chr4_2:8616848-8616867 | Msa0587120:intron | 20.0% |
| !!! | ATTCTTTTAAAAACGCATTT+AGG | - | chr4_2:8617073-8617092 | Msa0587120:intron | 20.0% |
| !!! | TGTGTGAATTTTTTAAAGAT+AGG | - | chr4_2:8617279-8617298 | Msa0587120:intron | 20.0% |
| !! | AAGTACTATTTGTAGATTTA+AGG | - | chr4_2:8617519-8617538 | Msa0587120:intron | 20.0% |
| !! | AGTACTATTTGTAGATTTAA+GGG | - | chr4_2:8617520-8617539 | Msa0587120:intron | 20.0% |
| !! | AAAAAGAGAACATAATTAAC+TGG | + | chr4_2:8617963-8617982 | None:intergenic | 20.0% |
| !! | GAATAATAGGCAATATATAT+GGG | + | chr4_2:8618122-8618141 | None:intergenic | 20.0% |
| ! | ATTGAGATTGGATGAAATTA+GGG | + | chr4_2:8613967-8613986 | None:intergenic | 25.0% |
| ! | AATTGAGATTGGATGAAATT+AGG | + | chr4_2:8613968-8613987 | None:intergenic | 25.0% |
| ! | TAATTTCATCCAATCTCAAT+TGG | - | chr4_2:8613967-8613986 | Msa0587120:three_prime_UTR | 25.0% |
| ! | ATCTATATTCCAATTGAGAT+TGG | + | chr4_2:8613979-8613998 | None:intergenic | 25.0% |
| ! | TCAGAAAATGAAAAGGAAAA+TGG | + | chr4_2:8614278-8614297 | None:intergenic | 25.0% |
| !!! | TAGTTGTTGTTTTTCTAACA+AGG | - | chr4_2:8614495-8614514 | Msa0587120:intron | 25.0% |
| !!! | AGTTGTTGTTTTTCTAACAA+GGG | - | chr4_2:8614496-8614515 | Msa0587120:intron | 25.0% |
| ! | GACAATTTGAATTGAGTAAT+TGG | - | chr4_2:8614830-8614849 | Msa0587120:intron | 25.0% |
| ! | AATTGTATCTGAGTTTAAGA+TGG | - | chr4_2:8614868-8614887 | Msa0587120:intron | 25.0% |
| !!! | GTGATTGTTGTTTTCTAATA+AGG | - | chr4_2:8614899-8614918 | Msa0587120:intron | 25.0% |
| !! | AAAAAAGACCTGATTTTGAA+TGG | - | chr4_2:8615071-8615090 | Msa0587120:CDS | 25.0% |
| ! | AGTCCATACAAGTTAATAAA+AGG | + | chr4_2:8615113-8615132 | None:intergenic | 25.0% |
| !! | GTTTGTTTGTTTCTTATGAA+GGG | - | chr4_2:8615332-8615351 | Msa0587120:intron | 25.0% |
| !! | TGAATGAGATATTTTGTGTT+TGG | - | chr4_2:8615403-8615422 | Msa0587120:intron | 25.0% |
| !!! | CTACTCTTTTTATTTAGTTC+AGG | - | chr4_2:8615447-8615466 | Msa0587120:intron | 25.0% |
| !!! | TCTTTTTATTTAGTTCAGGA+GGG | - | chr4_2:8615451-8615470 | Msa0587120:intron | 25.0% |
| ! | GTAATGAAAGAGATATTTGA+TGG | - | chr4_2:8615473-8615492 | Msa0587120:intron | 25.0% |
| ! | CAAATAAATGTTTGGCTAAT+TGG | - | chr4_2:8615737-8615756 | Msa0587120:CDS | 25.0% |
| ! | CAGCTAAAAATTGAAAACAT+TGG | + | chr4_2:8615867-8615886 | None:intergenic | 25.0% |
| !!! | CAATGTTTTCAATTTTTAGC+TGG | - | chr4_2:8615865-8615884 | Msa0587120:intron | 25.0% |
| ! | AGAGGATGAAAGAAATAAAA+GGG | + | chr4_2:8615921-8615940 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAAGAAATAAA+AGG | + | chr4_2:8615922-8615941 | None:intergenic | 25.0% |
| !! | ATTTTATATACACTCCTCTT+TGG | - | chr4_2:8616091-8616110 | Msa0587120:intron | 25.0% |
| ! | AACAAAAAAGTCAATCCATT+CGG | + | chr4_2:8616392-8616411 | None:intergenic | 25.0% |
| ! | CCACTTATAAACACATATTT+AGG | + | chr4_2:8616849-8616868 | None:intergenic | 25.0% |
| ! | CCTAAATATGTGTTTATAAG+TGG | - | chr4_2:8616846-8616865 | Msa0587120:intron | 25.0% |
| ! | AAATATGTGTTTATAAGTGG+GGG | - | chr4_2:8616849-8616868 | Msa0587120:intron | 25.0% |
| !! | CCATTAATAGTGTTGAAATT+GGG | + | chr4_2:8616917-8616936 | None:intergenic | 25.0% |
| !! | ACCATTAATAGTGTTGAAAT+TGG | + | chr4_2:8616918-8616937 | None:intergenic | 25.0% |
| ! | TTCAACACTATTAATGGTTT+AGG | - | chr4_2:8616920-8616939 | Msa0587120:intron | 25.0% |
| !! | CACAAGATGTTTAAATTTTC+AGG | - | chr4_2:8617002-8617021 | Msa0587120:intron | 25.0% |
| ! | AATTTGACAGTGAACAAAAA+AGG | + | chr4_2:8617218-8617237 | None:intergenic | 25.0% |
| ! | AAAATTCACACAAAGTTACA+AGG | + | chr4_2:8617271-8617290 | None:intergenic | 25.0% |
| ! | TGATTTAGTTAGAAGATATC+AGG | + | chr4_2:8617900-8617919 | None:intergenic | 25.0% |
| ! | AATCTGTCAAATTCTATATC+GGG | + | chr4_2:8618082-8618101 | None:intergenic | 25.0% |
| ! | GAATCTGTCAAATTCTATAT+CGG | + | chr4_2:8618083-8618102 | None:intergenic | 25.0% |
| ! | ATATATATGGGAATGACTTA+TGG | + | chr4_2:8618110-8618129 | None:intergenic | 25.0% |
| ! | GGAATAATAGGCAATATATA+TGG | + | chr4_2:8618123-8618142 | None:intergenic | 25.0% |
| ! | ACAAATAAAAGCGGAATAAT+AGG | + | chr4_2:8618135-8618154 | None:intergenic | 25.0% |
| ! | AAACTGATATTGAACATTGT+GGG | + | chr4_2:8618173-8618192 | None:intergenic | 25.0% |
| ! | GATATTATCACTGTTACTAT+TGG | - | chr4_2:8618193-8618212 | Msa0587120:five_prime_UTR | 25.0% |
| TTAGGGTTTAGAGAGAAATT+GGG | + | chr4_2:8613944-8613963 | None:intergenic | 30.0% | |
| ATTGGATGAAATTAGGGTTA+GGG | + | chr4_2:8613961-8613980 | None:intergenic | 30.0% | |
| ATTGGAATATAGATCGAAGA+AGG | - | chr4_2:8613985-8614004 | Msa0587120:three_prime_UTR | 30.0% | |
| TGAGTTCAAGATTGTTAGAT+TGG | - | chr4_2:8614472-8614491 | Msa0587120:intron | 30.0% | |
| AATTGAGCAACTGATTATGT+TGG | - | chr4_2:8614549-8614568 | Msa0587120:intron | 30.0% | |
| ATTTGTGTTTCTCCTAATGA+AGG | - | chr4_2:8614601-8614620 | Msa0587120:intron | 30.0% | |
| GACGAAAATGATTCAAATTG+AGG | - | chr4_2:8614629-8614648 | Msa0587120:intron | 30.0% | |
| ! | TTTGGGATAGATGAATTTGT+CGG | - | chr4_2:8614783-8614802 | Msa0587120:intron | 30.0% |
| ! | TGAGTTTAAGATGGTTAGAT+GGG | - | chr4_2:8614877-8614896 | Msa0587120:intron | 30.0% |
| TACAATTTCAGAGTGCAAAT+TGG | + | chr4_2:8615012-8615031 | None:intergenic | 30.0% | |
| !! | AATTTGCACTCTGAAATTGT+AGG | - | chr4_2:8615011-8615030 | Msa0587120:CDS | 30.0% |
| !!! | GGTCCTTTTATTAACTTGTA+TGG | - | chr4_2:8615107-8615126 | Msa0587120:CDS | 30.0% |
| TTGTCTACTTGCAAATTTCA+AGG | - | chr4_2:8615210-8615229 | Msa0587120:intron | 30.0% | |
| ! | GGTTTGTTTGTTTCTTATGA+AGG | - | chr4_2:8615331-8615350 | Msa0587120:intron | 30.0% |
| ! | ATATTTTGTGTTTGGTTGAG+CGG | - | chr4_2:8615411-8615430 | Msa0587120:intron | 30.0% |
| !! | CTCTTTTTATTTAGTTCAGG+AGG | - | chr4_2:8615450-8615469 | Msa0587120:intron | 30.0% |
| ATGAAAGAGATATTTGATGG+AGG | - | chr4_2:8615476-8615495 | Msa0587120:intron | 30.0% | |
| TGAAAGAGATATTTGATGGA+GGG | - | chr4_2:8615477-8615496 | Msa0587120:intron | 30.0% | |
| !!! | TGTTTTCAATTTTTAGCTGG+AGG | - | chr4_2:8615868-8615887 | Msa0587120:intron | 30.0% |
| GAGGATGAAAGAAATAAAAG+GGG | + | chr4_2:8615920-8615939 | None:intergenic | 30.0% | |
| TATAAAATGTGCATGTGTGT+GGG | + | chr4_2:8616079-8616098 | None:intergenic | 30.0% | |
| ATATAAAATGTGCATGTGTG+TGG | + | chr4_2:8616080-8616099 | None:intergenic | 30.0% | |
| ! | ATAAAAAAGTGTGACCAAAG+AGG | + | chr4_2:8616108-8616127 | None:intergenic | 30.0% |
| ! | TGTATTACTATTTTGTGACC+TGG | - | chr4_2:8616172-8616191 | Msa0587120:intron | 30.0% |
| !!! | CTTTTTTGTTCGAGAAATGA+TGG | - | chr4_2:8616402-8616421 | Msa0587120:intron | 30.0% |
| !! | TTAAAACTGTTTTTCCTAGC+AGG | - | chr4_2:8616566-8616585 | Msa0587120:intron | 30.0% |
| AACAAGGATTGTTGAACTAT+CGG | - | chr4_2:8616614-8616633 | Msa0587120:intron | 30.0% | |
| !!! | TTTTGAGACTTGTTTGTTTG+AGG | - | chr4_2:8616654-8616673 | Msa0587120:intron | 30.0% |
| TATTTGTGAAGATAATACCG+TGG | - | chr4_2:8616765-8616784 | Msa0587120:intron | 30.0% | |
| ATTTGTGAAGATAATACCGT+GGG | - | chr4_2:8616766-8616785 | Msa0587120:intron | 30.0% | |
| CCCAATTTCAACACTATTAA+TGG | - | chr4_2:8616914-8616933 | Msa0587120:intron | 30.0% | |
| ACAGTGAACAAAAAAGGATA+AGG | + | chr4_2:8617212-8617231 | None:intergenic | 30.0% | |
| !! | ATTTTGACACCGTTCTTTAA+CGG | - | chr4_2:8617307-8617326 | Msa0587120:intron | 30.0% |
| CTTCATGATGATAATTTCAG+AGG | - | chr4_2:8617375-8617394 | Msa0587120:intron | 30.0% | |
| TTGCTTGTCTGAATATAACA+AGG | + | chr4_2:8617688-8617707 | None:intergenic | 30.0% | |
| AGACAAGCAATTTAGTTAAG+TGG | - | chr4_2:8617698-8617717 | Msa0587120:intron | 30.0% | |
| AAGCAATTTAGTTAAGTGGT+GGG | - | chr4_2:8617702-8617721 | Msa0587120:intron | 30.0% | |
| TATTCATCTGTTGACAAACA+CGG | + | chr4_2:8617812-8617831 | None:intergenic | 30.0% | |
| ACAGATGAATAACTATGCTT+TGG | - | chr4_2:8617821-8617840 | Msa0587120:intron | 30.0% | |
| TTAGTTAGAAGATATCAGGT+GGG | + | chr4_2:8617896-8617915 | None:intergenic | 30.0% | |
| TTTAGTTAGAAGATATCAGG+TGG | + | chr4_2:8617897-8617916 | None:intergenic | 30.0% | |
| TGTGTAGAATGCCATAATAA+AGG | - | chr4_2:8617921-8617940 | Msa0587120:CDS | 30.0% | |
| ACTAGTTGCTACCTTTATTA+TGG | + | chr4_2:8617935-8617954 | None:intergenic | 30.0% | |
| ! | GTTCTCTTTTTATCACGAAA+AGG | - | chr4_2:8617972-8617991 | Msa0587120:CDS | 30.0% |
| GTAGAGACAACAAATAAAAG+CGG | + | chr4_2:8618144-8618163 | None:intergenic | 30.0% | |
| CAAACTGATATTGAACATTG+TGG | + | chr4_2:8618174-8618193 | None:intergenic | 30.0% | |
| AAGAGAAGGGTTGAAAATTG+AGG | + | chr4_2:8613902-8613921 | None:intergenic | 35.0% | |
| ! | TAGAGAGAAATTGGGGATTT+TGG | + | chr4_2:8613936-8613955 | None:intergenic | 35.0% |
| TAGGGTTTAGAGAGAAATTG+GGG | + | chr4_2:8613943-8613962 | None:intergenic | 35.0% | |
| GTTAGGGTTTAGAGAGAAAT+TGG | + | chr4_2:8613945-8613964 | None:intergenic | 35.0% | |
| GATTGGATGAAATTAGGGTT+AGG | + | chr4_2:8613962-8613981 | None:intergenic | 35.0% | |
| AAGGAAAATCAACGAAGAAG+AGG | - | chr4_2:8614004-8614023 | Msa0587120:three_prime_UTR | 35.0% | |
| AATCAACGAAGAAGAGGAAA+AGG | - | chr4_2:8614010-8614029 | Msa0587120:three_prime_UTR | 35.0% | |
| GGAATAGTTGGAAAACGAAT+CGG | + | chr4_2:8614188-8614207 | None:intergenic | 35.0% | |
| TCAAAGAGAGAAGGAATAGT+TGG | + | chr4_2:8614200-8614219 | None:intergenic | 35.0% | |
| TTACCAATTGGTCCATATGA+GGG | + | chr4_2:8614241-8614260 | None:intergenic | 35.0% | |
| ATTACCAATTGGTCCATATG+AGG | + | chr4_2:8614242-8614261 | None:intergenic | 35.0% | |
| TTTCGTCATCATCCTTCATT+AGG | + | chr4_2:8614616-8614635 | None:intergenic | 35.0% | |
| ! | CTGAGTTTAAGATGGTTAGA+TGG | - | chr4_2:8614876-8614895 | Msa0587120:intron | 35.0% |
| ! | GCAAATTTCAGGAGTGTAAA+TGG | + | chr4_2:8615043-8615062 | None:intergenic | 35.0% |
| TTTGCCTATTCGCAAATTTC+AGG | + | chr4_2:8615054-8615073 | None:intergenic | 35.0% | |
| TTGCCTGTTTGCAAATTTCA+AGG | - | chr4_2:8615163-8615182 | Msa0587120:intron | 35.0% | |
| ! | TGTTTGTTTCTTATGAAGGG+AGG | - | chr4_2:8615335-8615354 | Msa0587120:intron | 35.0% |
| !!! | TGAGAGGTATTTTTGATGGA+GGG | - | chr4_2:8615362-8615381 | Msa0587120:intron | 35.0% |
| ATCCACATTGACATCAATCT+CGG | + | chr4_2:8615697-8615716 | None:intergenic | 35.0% | |
| !! | GGTGTTGGCAAATAAATGTT+TGG | - | chr4_2:8615729-8615748 | Msa0587120:CDS | 35.0% |
| TTTGTTGACCATTTGGACTT+TGG | - | chr4_2:8615765-8615784 | Msa0587120:CDS | 35.0% | |
| TGAAAACTCCAAAGTCCAAA+TGG | + | chr4_2:8615776-8615795 | None:intergenic | 35.0% | |
| CAAAACAATGGTCTCAGATT+TGG | - | chr4_2:8615813-8615832 | Msa0587120:CDS | 35.0% | |
| ATAAAATGTGCATGTGTGTG+GGG | + | chr4_2:8616078-8616097 | None:intergenic | 35.0% | |
| AATGATCTGTTGACAAGCAA+TGG | - | chr4_2:8616227-8616246 | Msa0587120:intron | 35.0% | |
| GAAAAACTGTGCAGGTAAAT+TGG | - | chr4_2:8616300-8616319 | Msa0587120:intron | 35.0% | |
| CAGGTAAATTGGAGAATGAT+GGG | - | chr4_2:8616311-8616330 | Msa0587120:intron | 35.0% | |
| TCGAGAAATCAATCAGTGAA+CGG | - | chr4_2:8616479-8616498 | Msa0587120:CDS | 35.0% | |
| TTTGTGAAGATAATACCGTG+GGG | - | chr4_2:8616767-8616786 | Msa0587120:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr4_2:8616893-8616912 | None:intergenic | 35.0% | |
| AGATACATACTCATCAACTG+AGG | + | chr4_2:8616976-8616995 | None:intergenic | 35.0% | |
| TCAGGAAAATTTGATGCTGA+AGG | - | chr4_2:8617020-8617039 | Msa0587120:intron | 35.0% | |
| ATTGTTCACCCTTGGTTAAA+AGG | - | chr4_2:8617235-8617254 | Msa0587120:intron | 35.0% | |
| !!! | CATTGACTCCTTTTAACCAA+GGG | + | chr4_2:8617246-8617265 | None:intergenic | 35.0% |
| !!! | ACATTGACTCCTTTTAACCA+AGG | + | chr4_2:8617247-8617266 | None:intergenic | 35.0% |
| ! | TTTTGACACCGTTCTTTAAC+GGG | - | chr4_2:8617308-8617327 | Msa0587120:intron | 35.0% |
| AAAGAGTGATGTGACTACAT+AGG | - | chr4_2:8617340-8617359 | Msa0587120:intron | 35.0% | |
| !! | CAGAGGTTCATATTGATTCT+CGG | - | chr4_2:8617392-8617411 | Msa0587120:intron | 35.0% |
| !! | GGTTCTGAAGAACATTTGAT+AGG | - | chr4_2:8617413-8617432 | Msa0587120:intron | 35.0% |
| CAAGCAATTTAGTTAAGTGG+TGG | - | chr4_2:8617701-8617720 | Msa0587120:intron | 35.0% | |
| AATGTACAAAAGCTGAAGCT+TGG | + | chr4_2:8617753-8617772 | None:intergenic | 35.0% | |
| ! | GTTATAGTTTGTGTAGCTTC+TGG | - | chr4_2:8618004-8618023 | Msa0587120:CDS | 35.0% |
| !! | AAATTCTATATCGGGTTGAC+GGG | + | chr4_2:8618074-8618093 | None:intergenic | 35.0% |
| !! | CAAATTCTATATCGGGTTGA+CGG | + | chr4_2:8618075-8618094 | None:intergenic | 35.0% |
| !! | GAAATTGGGGATTTTGGTGA+TGG | + | chr4_2:8613930-8613949 | None:intergenic | 40.0% |
| TCGAATTCGATAGTCAGCAT+CGG | - | chr4_2:8614053-8614072 | Msa0587120:three_prime_UTR | 40.0% | |
| TTAGATAAAGGAGGAGAAGG+AGG | + | chr4_2:8614137-8614156 | None:intergenic | 40.0% | |
| CTCTTAGATAAAGGAGGAGA+AGG | + | chr4_2:8614140-8614159 | None:intergenic | 40.0% | |
| CTTCTCCTCCTTTATCTAAG+AGG | - | chr4_2:8614138-8614157 | Msa0587120:three_prime_UTR | 40.0% | |
| CAACGAAGCCTCTTAGATAA+AGG | + | chr4_2:8614149-8614168 | None:intergenic | 40.0% | |
| CCATATGAGGGAAGAGATTA+CGG | + | chr4_2:8614229-8614248 | None:intergenic | 40.0% | |
| CACTCCTGAAATTTGCGAAT+AGG | - | chr4_2:8615047-8615066 | Msa0587120:CDS | 40.0% | |
| ! | ACCTGATTTTGAATGGTGTC+AGG | - | chr4_2:8615078-8615097 | Msa0587120:CDS | 40.0% |
| ! | TTGAATGGTGTCAGGCAATT+TGG | - | chr4_2:8615086-8615105 | Msa0587120:CDS | 40.0% |
| CCACCTTGAAATTTGCAAAC+AGG | + | chr4_2:8615169-8615188 | None:intergenic | 40.0% | |
| CCTGTTTGCAAATTTCAAGG+TGG | - | chr4_2:8615166-8615185 | Msa0587120:intron | 40.0% | |
| CAAGGTGGCAATTCAAAATC+AGG | - | chr4_2:8615181-8615200 | Msa0587120:intron | 40.0% | |
| ! | TTGTTTCTTATGAAGGGAGG+AGG | - | chr4_2:8615338-8615357 | Msa0587120:intron | 40.0% |
| TGTTTCTTATGAAGGGAGGA+GGG | - | chr4_2:8615339-8615358 | Msa0587120:intron | 40.0% | |
| !!! | AGGGTGAGAGGTATTTTTGA+TGG | - | chr4_2:8615358-8615377 | Msa0587120:intron | 40.0% |
| !!! | GTGAGAGGTATTTTTGATGG+AGG | - | chr4_2:8615361-8615380 | Msa0587120:intron | 40.0% |
| !!! | GAGAGGTATTTTTGATGGAG+GGG | - | chr4_2:8615363-8615382 | Msa0587120:intron | 40.0% |
| !!! | AGAGGTATTTTTGATGGAGG+GGG | - | chr4_2:8615364-8615383 | Msa0587120:intron | 40.0% |
| CTAGATCGTTGTCACATTCT+TGG | + | chr4_2:8615602-8615621 | None:intergenic | 40.0% | |
| AGCCTGAATGAGCTTTACTT+GGG | - | chr4_2:8615636-8615655 | Msa0587120:CDS | 40.0% | |
| ATCCGAGATTGATGTCAATG+TGG | - | chr4_2:8615692-8615711 | Msa0587120:CDS | 40.0% | |
| ATTGATGTCAATGTGGATGC+AGG | - | chr4_2:8615699-8615718 | Msa0587120:CDS | 40.0% | |
| AATGTGGATGCAGGTATGAT+TGG | - | chr4_2:8615708-8615727 | Msa0587120:CDS | 40.0% | |
| ! | GGATGTGTTTGTTGACCATT+TGG | - | chr4_2:8615758-8615777 | Msa0587120:CDS | 40.0% |
| ! | GGTCTCAGATTTGGTAGTAT+TGG | - | chr4_2:8615822-8615841 | Msa0587120:CDS | 40.0% |
| GAGAGAGATAGGTTACTAAG+AGG | + | chr4_2:8615939-8615958 | None:intergenic | 40.0% | |
| TAAAATGTGCATGTGTGTGG+GGG | + | chr4_2:8616077-8616096 | None:intergenic | 40.0% | |
| ACACTAGAAATGTGCTCATG+AGG | + | chr4_2:8616155-8616174 | None:intergenic | 40.0% | |
| ! | ACTATTTTGTGACCTGGACA+AGG | - | chr4_2:8616178-8616197 | Msa0587120:intron | 40.0% |
| ! | CTATTTTGTGACCTGGACAA+GGG | - | chr4_2:8616179-8616198 | Msa0587120:intron | 40.0% |
| CGTGTCAAGTGTCAATATCT+TGG | + | chr4_2:8616275-8616294 | None:intergenic | 40.0% | |
| ACGTGTTTGAAAAACTGTGC+AGG | - | chr4_2:8616292-8616311 | Msa0587120:intron | 40.0% | |
| GCAGGTAAATTGGAGAATGA+TGG | - | chr4_2:8616310-8616329 | Msa0587120:intron | 40.0% | |
| CGAGAAATCAATCAGTGAAC+GGG | - | chr4_2:8616480-8616499 | Msa0587120:CDS | 40.0% | |
| AATGTCCTTGGTGAAGAACA+AGG | - | chr4_2:8616598-8616617 | Msa0587120:intron | 40.0% | |
| ACAATCCTTGTTCTTCACCA+AGG | + | chr4_2:8616606-8616625 | None:intergenic | 40.0% | |
| AGGATTGTTGAACTATCGGT+AGG | - | chr4_2:8616618-8616637 | Msa0587120:intron | 40.0% | |
| AAGAATGTACTGTTGAGTGC+TGG | - | chr4_2:8616677-8616696 | Msa0587120:intron | 40.0% | |
| ACCTCACATCAGATAAGAGA+TGG | - | chr4_2:8616823-8616842 | Msa0587120:intron | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr4_2:8616891-8616910 | Msa0587120:intron | 40.0% |
| CTCATCAACTGAGGATAACA+GGG | + | chr4_2:8616967-8616986 | None:intergenic | 40.0% | |
| ACTCATCAACTGAGGATAAC+AGG | + | chr4_2:8616968-8616987 | None:intergenic | 40.0% | |
| !! | GCAAATCGAAGTGCTGATTA+AGG | - | chr4_2:8617044-8617063 | Msa0587120:intron | 40.0% |
| ! | ATTGCAGCATTTGAAGCAGT+TGG | - | chr4_2:8617140-8617159 | Msa0587120:intron | 40.0% |
| ACTGTCAAATTGTTCACCCT+TGG | - | chr4_2:8617227-8617246 | Msa0587120:intron | 40.0% | |
| CCTTCTATCCCGTTAAAGAA+CGG | + | chr4_2:8617319-8617338 | None:intergenic | 40.0% | |
| CGTTCTTTAACGGGATAGAA+GGG | - | chr4_2:8617317-8617336 | Msa0587120:intron | 40.0% | |
| TCGTGTATTTCTCTCCCTTT+GGG | - | chr4_2:8617471-8617490 | Msa0587120:intron | 40.0% | |
| TAAGGGAAGTTTCCATTTGC+TGG | - | chr4_2:8617537-8617556 | Msa0587120:intron | 40.0% | |
| ATTCAGAGAAGACCAGCAAA+TGG | + | chr4_2:8617552-8617571 | None:intergenic | 40.0% | |
| TTCTGCTTTGGTTGAAAACG+AGG | - | chr4_2:8617597-8617616 | Msa0587120:intron | 40.0% | |
| CAGATGCAATAACTGAGCAT+TGG | + | chr4_2:8617628-8617647 | None:intergenic | 40.0% | |
| ! | TTTGGCAATGCATTTGAAGC+AGG | - | chr4_2:8617839-8617858 | Msa0587120:intron | 40.0% |
| ! | AACAGAGCAACGGATTTCAA+GGG | - | chr4_2:8617865-8617884 | Msa0587120:intron | 40.0% |
| !! | GGTGATGGTGGAAAAGAGAA+GGG | + | chr4_2:8613915-8613934 | None:intergenic | 45.0% |
| !! | TGGTGATGGTGGAAAAGAGA+AGG | + | chr4_2:8613916-8613935 | None:intergenic | 45.0% |
| !!! | ATTGGGGATTTTGGTGATGG+TGG | + | chr4_2:8613927-8613946 | None:intergenic | 45.0% |
| CAACGAAGAAGAGGAAAAGG+AGG | - | chr4_2:8614013-8614032 | Msa0587120:three_prime_UTR | 45.0% | |
| GAGGAAAAGGAGGAGGAAAT+TGG | - | chr4_2:8614023-8614042 | Msa0587120:three_prime_UTR | 45.0% | |
| CGAAGCCTCTTAGATAAAGG+AGG | + | chr4_2:8614146-8614165 | None:intergenic | 45.0% | |
| ACGAATCGGAGAAGTAGAAG+AGG | + | chr4_2:8614174-8614193 | None:intergenic | 45.0% | |
| CCGTAATCTCTTCCCTCATA+TGG | - | chr4_2:8614226-8614245 | Msa0587120:three_prime_UTR | 45.0% | |
| CTTCCCTCATATGGACCAAT+TGG | - | chr4_2:8614235-8614254 | Msa0587120:exon | 45.0% | |
| !! | CACTCTGAAATTGTAGGCGT+CGG | - | chr4_2:8615017-8615036 | Msa0587120:CDS | 45.0% |
| GCCTGACACCATTCAAAATC+AGG | + | chr4_2:8615082-8615101 | None:intergenic | 45.0% | |
| AATTCGTCCCCTGAAGTTGT+AGG | + | chr4_2:8615251-8615270 | None:intergenic | 45.0% | |
| TACAACTTCAGGGGACGAAT+TGG | - | chr4_2:8615250-8615269 | Msa0587120:intron | 45.0% | |
| ACAACTTCAGGGGACGAATT+GGG | - | chr4_2:8615251-8615270 | Msa0587120:intron | 45.0% | |
| GAGCCTGAATGAGCTTTACT+TGG | - | chr4_2:8615635-8615654 | Msa0587120:CDS | 45.0% | |
| CACCCAAGTAAAGCTCATTC+AGG | + | chr4_2:8615641-8615660 | None:intergenic | 45.0% | |
| GATGCAGGTATGATTGGTGT+TGG | - | chr4_2:8615714-8615733 | Msa0587120:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAGAT+AGG | + | chr4_2:8615950-8615969 | None:intergenic | 45.0% | |
| AATCAATCAGTGAACGGGCA+AGG | - | chr4_2:8616485-8616504 | Msa0587120:CDS | 45.0% | |
| ATCAATCAGTGAACGGGCAA+GGG | - | chr4_2:8616486-8616505 | Msa0587120:CDS | 45.0% | |
| ACATTCACTTGTGACCTGCT+AGG | + | chr4_2:8616583-8616602 | None:intergenic | 45.0% | |
| AGGTCACAAGTGAATGTCCT+TGG | - | chr4_2:8616586-8616605 | Msa0587120:intron | 45.0% | |
| !! | GTTGAGTGCTGGTTTAGTTG+AGG | - | chr4_2:8616688-8616707 | Msa0587120:intron | 45.0% |
| AAGATAATACCGTGGGGAGA+GGG | - | chr4_2:8616773-8616792 | Msa0587120:intron | 45.0% | |
| CTCTTATCTGATGTGAGGTG+AGG | + | chr4_2:8616822-8616841 | None:intergenic | 45.0% | |
| GCCATCTCTTATCTGATGTG+AGG | + | chr4_2:8616827-8616846 | None:intergenic | 45.0% | |
| CCGTTCTTTAACGGGATAGA+AGG | - | chr4_2:8617316-8617335 | Msa0587120:intron | 45.0% | |
| GTCGTGTATTTCTCTCCCTT+TGG | - | chr4_2:8617470-8617489 | Msa0587120:intron | 45.0% | |
| CGTGTATTTCTCTCCCTTTG+GGG | - | chr4_2:8617472-8617491 | Msa0587120:intron | 45.0% | |
| AAATAACTCCCAGCCCCAAA+GGG | + | chr4_2:8617488-8617507 | None:intergenic | 45.0% | |
| AAAATAACTCCCAGCCCCAA+AGG | + | chr4_2:8617489-8617508 | None:intergenic | 45.0% | |
| !! | TTTGGGGCTGGGAGTTATTT+TGG | - | chr4_2:8617488-8617507 | Msa0587120:intron | 45.0% |
| ! | CTGAATCTCCTTCCTTTTGC+CGG | - | chr4_2:8617566-8617585 | Msa0587120:intron | 45.0% |
| ! | TGAATCTCCTTCCTTTTGCC+GGG | - | chr4_2:8617567-8617586 | Msa0587120:intron | 45.0% |
| CTTTGGTTGAAAACGAGGAG+AGG | - | chr4_2:8617602-8617621 | Msa0587120:intron | 45.0% | |
| ! | CAACAGAGCAACGGATTTCA+AGG | - | chr4_2:8617864-8617883 | Msa0587120:intron | 45.0% |
| TGACGGGATAGAATCACTCT+TGG | + | chr4_2:8618058-8618077 | None:intergenic | 45.0% | |
| !!! | ATGATTTTTTTTTTTTTTTT+GGG | - | chr4_2:8614766-8614785 | Msa0587120:intron | 5.0% |
| !!! | TTTTACATATAAAATAAATT+TGG | - | chr4_2:8617660-8617679 | Msa0587120:intron | 5.0% |
| CGAAGAAGAGGAAAAGGAGG+AGG | - | chr4_2:8614016-8614035 | Msa0587120:three_prime_UTR | 50.0% | |
| CGGAGCTGATCAAAGAGAGA+AGG | + | chr4_2:8614209-8614228 | None:intergenic | 50.0% | |
| CAACTTCAGGGGACGAATTG+GGG | - | chr4_2:8615252-8615271 | Msa0587120:intron | 50.0% | |
| ! | TTTTGATGGAGGGGGTGAGT+AGG | - | chr4_2:8615372-8615391 | Msa0587120:intron | 50.0% |
| ! | TTTACTTGGGTGCTGCAGGT+GGG | - | chr4_2:8615649-8615668 | Msa0587120:CDS | 50.0% |
| ATACTTCACAGCCCTTGTCC+AGG | + | chr4_2:8616193-8616212 | None:intergenic | 50.0% | |
| GGACAAGGGCTGTGAAGTAT+AGG | - | chr4_2:8616193-8616212 | Msa0587120:intron | 50.0% | |
| TTGAACAGCCTTCCTGCAGA+TGG | - | chr4_2:8616364-8616383 | Msa0587120:intron | 50.0% | |
| ! | GGCTCTAGCATCATCAACAC+TGG | + | chr4_2:8616434-8616453 | None:intergenic | 50.0% |
| GAAGATAATACCGTGGGGAG+AGG | - | chr4_2:8616772-8616791 | Msa0587120:intron | 50.0% | |
| !! | CCTTACAAAACCGGCTTGTG+AGG | + | chr4_2:8616884-8616903 | None:intergenic | 50.0% |
| !! | CCTCACAAGCCGGTTTTGTA+AGG | - | chr4_2:8616881-8616900 | Msa0587120:intron | 50.0% |
| AATCAGAAAGACGCTCGTGC+TGG | + | chr4_2:8617101-8617120 | None:intergenic | 50.0% | |
| ! | CAAGAGTTCTGATCTGCTCC+TGG | + | chr4_2:8617176-8617195 | None:intergenic | 50.0% |
| GGAGCAGATCAGAACTCTTG+AGG | - | chr4_2:8617176-8617195 | Msa0587120:intron | 50.0% | |
| !! | TATTTCTCTCCCTTTGGGGC+TGG | - | chr4_2:8617476-8617495 | Msa0587120:intron | 50.0% |
| !! | ATTTCTCTCCCTTTGGGGCT+GGG | - | chr4_2:8617477-8617496 | Msa0587120:intron | 50.0% |
| AGAATTGAGTGCCCGGCAAA+AGG | + | chr4_2:8617581-8617600 | None:intergenic | 50.0% | |
| CCAAAGCAGAATTGAGTGCC+CGG | + | chr4_2:8617588-8617607 | None:intergenic | 50.0% | |
| AAGCAGGCTCAACAGAGCAA+CGG | - | chr4_2:8617855-8617874 | Msa0587120:intron | 50.0% | |
| ACGATGTCTGCTGCTGTGTG+CGG | - | chr4_2:8614080-8614099 | Msa0587120:three_prime_UTR | 55.0% | |
| TCCCCTGAAGTTGTAGGCGT+CGG | + | chr4_2:8615245-8615264 | None:intergenic | 55.0% | |
| TATGAAGGGAGGAGGGTGAG+AGG | - | chr4_2:8615346-8615365 | Msa0587120:intron | 55.0% | |
| ! | GAGCTTTACTTGGGTGCTGC+AGG | - | chr4_2:8615645-8615664 | Msa0587120:CDS | 55.0% |
| ! | CTTTACTTGGGTGCTGCAGG+TGG | - | chr4_2:8615648-8615667 | Msa0587120:CDS | 55.0% |
| ATTCGGCTCCATCTGCAGGA+AGG | + | chr4_2:8616375-8616394 | None:intergenic | 55.0% | |
| TTCCTGCAGATGGAGCCGAA+TGG | - | chr4_2:8616374-8616393 | Msa0587120:intron | 55.0% | |
| ATCCATTCGGCTCCATCTGC+AGG | + | chr4_2:8616379-8616398 | None:intergenic | 55.0% | |
| CTCCAGCATTCTAGCAGCAC+GGG | + | chr4_2:8616455-8616474 | None:intergenic | 55.0% | |
| CCTCCAGCATTCTAGCAGCA+CGG | + | chr4_2:8616456-8616475 | None:intergenic | 55.0% | |
| GGCGACAGATGCTCTTCAGA+AGG | - | chr4_2:8616513-8616532 | Msa0587120:CDS | 55.0% | |
| ATAATACCGTGGGGAGAGGG+TGG | - | chr4_2:8616776-8616795 | Msa0587120:intron | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | - | chr4_2:8616871-8616890 | Msa0587120:intron | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_2:8616879-8616898 | None:intergenic | 55.0% |
| GCAGTTGGCGTCTCAATACC+AGG | - | chr4_2:8617155-8617174 | Msa0587120:intron | 55.0% | |
| TTGAGTGCCCGGCAAAAGGA+AGG | + | chr4_2:8617577-8617596 | None:intergenic | 55.0% | |
| CCGGGCACTCAATTCTGCTT+TGG | - | chr4_2:8617585-8617604 | Msa0587120:intron | 55.0% | |
| TGCCCGACGCCTACAACTTC+AGG | - | chr4_2:8615239-8615258 | Msa0587120:intron | 60.0% | |
| GCCCGACGCCTACAACTTCA+GGG | - | chr4_2:8615240-8615259 | Msa0587120:intron | 60.0% | |
| CCCCTGAAGTTGTAGGCGTC+GGG | + | chr4_2:8615244-8615263 | None:intergenic | 60.0% | |
| CCCGACGCCTACAACTTCAG+GGG | - | chr4_2:8615241-8615260 | Msa0587120:intron | 60.0% | |
| ! | GGTGCTGCAGGTGGGAATTC+TGG | - | chr4_2:8615657-8615676 | Msa0587120:CDS | 60.0% |
| TGGGGGTGAGAGAGAGTCGA+TGG | + | chr4_2:8616060-8616079 | None:intergenic | 60.0% | |
| ! | AGCCCGTGCTGCTAGAATGC+TGG | - | chr4_2:8616450-8616469 | Msa0587120:CDS | 60.0% |
| ! | CCGTGCTGCTAGAATGCTGG+AGG | - | chr4_2:8616453-8616472 | Msa0587120:CDS | 60.0% |
| TTTGCTCCACCCTCTCCCCA+CGG | + | chr4_2:8616785-8616804 | None:intergenic | 60.0% | |
| CAGTGAACGGGCAAGGGCTG+AGG | - | chr4_2:8616492-8616511 | Msa0587120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8613889 | 8618273 | 8613889 | ID=Msa0587120;Name=Msa0587120 |
| chr4_2 | mRNA | 8613889 | 8618273 | 8613889 | ID=Msa0587120-mRNA-1;Parent=Msa0587120;Name=Msa0587120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=194|1|1|1|1|1|5|362|264 |
| chr4_2 | exon | 8613889 | 8614337 | 8613889 | ID=Msa0587120-mRNA-1:exon:2376;Parent=Msa0587120-mRNA-1 |
| chr4_2 | exon | 8614965 | 8615138 | 8614965 | ID=Msa0587120-mRNA-1:exon:2375;Parent=Msa0587120-mRNA-1 |
| chr4_2 | exon | 8615628 | 8615848 | 8615628 | ID=Msa0587120-mRNA-1:exon:2374;Parent=Msa0587120-mRNA-1 |
| chr4_2 | exon | 8616442 | 8616580 | 8616442 | ID=Msa0587120-mRNA-1:exon:2373;Parent=Msa0587120-mRNA-1 |
| chr4_2 | exon | 8617906 | 8618273 | 8617906 | ID=Msa0587120-mRNA-1:exon:2372;Parent=Msa0587120-mRNA-1 |
| chr4_2 | five_prime_UTR | 8618080 | 8618273 | 8618080 | ID=Msa0587120-mRNA-1:five_prime_utr;Parent=Msa0587120-mRNA-1 |
| chr4_2 | CDS | 8617906 | 8618079 | 8617906 | ID=Msa0587120-mRNA-1:cds;Parent=Msa0587120-mRNA-1 |
| chr4_2 | CDS | 8616442 | 8616580 | 8616442 | ID=Msa0587120-mRNA-1:cds;Parent=Msa0587120-mRNA-1 |
| chr4_2 | CDS | 8615628 | 8615848 | 8615628 | ID=Msa0587120-mRNA-1:cds;Parent=Msa0587120-mRNA-1 |
| chr4_2 | CDS | 8614965 | 8615138 | 8614965 | ID=Msa0587120-mRNA-1:cds;Parent=Msa0587120-mRNA-1 |
| chr4_2 | CDS | 8614251 | 8614337 | 8614251 | ID=Msa0587120-mRNA-1:cds;Parent=Msa0587120-mRNA-1 |
| chr4_2 | three_prime_UTR | 8613889 | 8614250 | 8613889 | ID=Msa0587120-mRNA-1:three_prime_utr;Parent=Msa0587120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
