Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123400 | sp|Q5ZIX3|EAF6_CHICK | 44.444 | 90 | 48 | 1 | 16 | 103 | 21 | 110 | 1.14e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123400 | I3SAI9 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 1.77e-110 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0123400 | 0.831021 | 2.114000e-55 | -8.615850e-47 |
| Msa0015390 | Msa0123400 | 0.802699 | 4.956712e-49 | -8.615850e-47 |
| Msa0123400 | Msa0135380 | 0.802171 | 6.367830e-49 | -8.615850e-47 |
| Msa0123400 | Msa0288100 | 0.800978 | 1.118298e-48 | -8.615850e-47 |
| Msa0123400 | Msa0333030 | 0.800137 | 1.659296e-48 | -8.615850e-47 |
| Msa0123400 | Msa0405370 | 0.809229 | 2.097727e-50 | -8.615850e-47 |
| Msa0123400 | Msa0820850 | 0.805712 | 1.169191e-49 | -8.615850e-47 |
| Msa0123400 | Msa0861130 | 0.809177 | 2.152888e-50 | -8.615850e-47 |
| Msa0123400 | Msa0898670 | 0.816472 | 5.433622e-52 | -8.615850e-47 |
| Msa0123400 | Msa0938220 | 0.804589 | 2.008840e-49 | -8.615850e-47 |
| Msa0123400 | Msa0969520 | 0.803601 | 3.224317e-49 | -8.615850e-47 |
| Msa0123400 | Msa0993290 | 0.802739 | 4.863809e-49 | -8.615850e-47 |
| Msa0123400 | Msa1082500 | 0.803784 | 2.954383e-49 | -8.615850e-47 |
| Msa0123400 | Msa1346370 | 0.803351 | 3.634109e-49 | -8.615850e-47 |
| Msa0123400 | Msa1461300 | 0.809748 | 1.623034e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123400 | MtrunA17_Chr1g0183901 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 3.42e-114 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123400 | AT4G14385.1 | 68.056 | 144 | 40 | 2 | 3 | 143 | 2 | 142 | 2.09e-57 | 177 |
| Msa0123400 | AT4G14385.2 | 72.807 | 114 | 31 | 0 | 3 | 116 | 2 | 115 | 9.41e-51 | 159 |
| Msa0123400 | AT4G14385.5 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 2.88e-41 | 134 |
| Msa0123400 | AT4G14385.9 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 2.88e-41 | 134 |
| Msa0123400 | AT4G14385.6 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0123400 | AT4G14385.7 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0123400 | AT4G14385.4 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0123400 | AT4G14385.8 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0123400 | AT4G14385.3 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
Find 50 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCGTTCCTTGAAAA+TGG | 0.219889 | 1_3:+50526526 | Msa0123400:exon |
| TCCTCATTCTATGTATATAT+TGG | 0.258578 | 1_3:+50529334 | Msa0123400:three_prime_UTR |
| GTCTGAAACAGAGTAAAATT+TGG | 0.278525 | 1_3:+50526472 | Msa0123400:five_prime_UTR |
| CTCGACACAGGTTTATGATA+TGG | 0.290750 | 1_3:+50527145 | Msa0123400:intron |
| CTTGCTCTCTTCGCATCTCT+TGG | 0.327976 | 1_3:-50529159 | None:intergenic |
| ACAGTGTGGCAATGTATTAA+AGG | 0.345831 | 1_3:+50527193 | Msa0123400:CDS |
| GGCGCACCTCTTCCTTTCTT+CGG | 0.350577 | 1_3:-50529138 | None:intergenic |
| TCAGATGGGAGATCAGATTT+TGG | 0.357334 | 1_3:+50528923 | Msa0123400:intron |
| TCTGAAACAGAGTAAAATTT+GGG | 0.361347 | 1_3:+50526473 | Msa0123400:five_prime_UTR |
| GAACGATTTGATTGAGGATT+CGG | 0.389452 | 1_3:-50526515 | None:intergenic |
| AAGTTGATGTTTACCGTTTG+CGG | 0.399599 | 1_3:+50529506 | Msa0123400:three_prime_UTR |
| GATCAAACTTTGTTCTGTAC+AGG | 0.413406 | 1_3:-50529471 | None:intergenic |
| GGTGGAACAATTTATGCAAA+TGG | 0.417556 | 1_3:+50528962 | Msa0123400:CDS |
| TAATGAAAAGAGCCTATCTT+CGG | 0.435385 | 1_3:-50527925 | None:intergenic |
| GAAAGTTTCAGCCCGAAGAT+AGG | 0.435750 | 1_3:+50527913 | Msa0123400:CDS |
| TTTCCAAGGTAGTGGTACTC+TGG | 0.439938 | 1_3:-50529543 | None:intergenic |
| TTTGGTCCTGGTCGATCAAA+AGG | 0.448086 | 1_3:+50528941 | Msa0123400:CDS |
| TTCAATCACAATGTCATGTC+AGG | 0.452440 | 1_3:-50529219 | None:intergenic |
| ACAAGTTATTTACAAGATCC+TGG | 0.455785 | 1_3:+50527170 | Msa0123400:CDS |
| CAGTGTTCTTTGTTGACGAC+AGG | 0.457160 | 1_3:-50527229 | None:intergenic |
| GTAGAAAATCCACGACTACT+AGG | 0.457915 | 1_3:-50529359 | None:intergenic |
| CAGTGTGGCAATGTATTAAA+GGG | 0.460090 | 1_3:+50527194 | Msa0123400:CDS |
| TTCAAGGAACGATTTGATTG+AGG | 0.473788 | 1_3:-50526521 | None:intergenic |
| GCTTCGTAATATTGAAAAGC+AGG | 0.480561 | 1_3:+50526727 | Msa0123400:CDS |
| CAAGAGATGCGAAGAGAGCA+AGG | 0.508415 | 1_3:+50529160 | Msa0123400:CDS |
| AATACATTGCCACACTGTCC+AGG | 0.510409 | 1_3:-50527188 | None:intergenic |
| TAGGCTGAAGAGCTTGCAGC+TGG | 0.515731 | 1_3:+50528809 | Msa0123400:intron |
| AATGTATTAAAGGGATTCGA+AGG | 0.523259 | 1_3:+50527203 | Msa0123400:CDS |
| AATGAAAAGAGCCTATCTTC+GGG | 0.524881 | 1_3:-50527924 | None:intergenic |
| ACCAATGGCCTATCTAATGC+AGG | 0.527926 | 1_3:-50529301 | None:intergenic |
| GGTGAACCCTTCAGCAATGT+TGG | 0.540152 | 1_3:+50526667 | Msa0123400:CDS |
| AAACATCAACTTCTACAAGT+TGG | 0.547916 | 1_3:-50529495 | None:intergenic |
| TATAGGGGTAAACCGAAGAA+AGG | 0.552151 | 1_3:+50529126 | Msa0123400:intron |
| ACCTGCATTAGATAGGCCAT+TGG | 0.559678 | 1_3:+50529300 | Msa0123400:three_prime_UTR |
| GAGCTTGCAGCTGGACGAGA+CGG | 0.560192 | 1_3:+50528818 | Msa0123400:CDS |
| GCCAATATATACATAGAATG+AGG | 0.561937 | 1_3:-50529335 | None:intergenic |
| GAGGAATTGCAGAGAACCAA+TGG | 0.564055 | 1_3:-50529316 | None:intergenic |
| AAGGAAGCCAACATTGCTGA+AGG | 0.567280 | 1_3:-50526674 | None:intergenic |
| AATCCAGAGTACCACTACCT+TGG | 0.581131 | 1_3:+50529540 | Msa0123400:three_prime_UTR |
| TCAGAAACACACCGCTGGCG+AGG | 0.588747 | 1_3:-50527958 | None:intergenic |
| ATATTGGCTCCTAGTAGTCG+TGG | 0.609190 | 1_3:+50529350 | Msa0123400:three_prime_UTR |
| GACATTGTGATTGAACATGC+TGG | 0.614238 | 1_3:+50529227 | Msa0123400:exon |
| GGTAAACCGAAGAAAGGAAG+AGG | 0.619973 | 1_3:+50529132 | Msa0123400:CDS |
| ATCTTCAGTGACCTCGCCAG+CGG | 0.629189 | 1_3:+50527947 | Msa0123400:CDS |
| GGTCCTGGTCGATCAAAAGG+TGG | 0.634647 | 1_3:+50528944 | Msa0123400:CDS |
| ATGTATTAAAGGGATTCGAA+GGG | 0.646876 | 1_3:+50527204 | Msa0123400:CDS |
| AAGAGATGCGAAGAGAGCAA+GGG | 0.657814 | 1_3:+50529161 | Msa0123400:CDS |
| AGGAAGCCAACATTGCTGAA+GGG | 0.663989 | 1_3:-50526673 | None:intergenic |
| TTACAAGATCCTGGACAGTG+TGG | 0.680932 | 1_3:+50527179 | Msa0123400:CDS |
| TCCTTGAAAATGGAATCCGA+AGG | 0.698033 | 1_3:+50526536 | Msa0123400:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATATTAATTTTT+AGG | + | chr1_3:50526632-50526651 | Msa0123400:intron | 0.0% |
| !!! | AATTACTATTTATTTTTACA+TGG | - | chr1_3:50527778-50527797 | None:intergenic | 10.0% |
| !!! | ATATATTTTTTATCTAATTC+AGG | - | chr1_3:50528005-50528024 | None:intergenic | 10.0% |
| !!! | ATTCTTTTGTAATTTCAATT+TGG | + | chr1_3:50526593-50526612 | Msa0123400:intron | 15.0% |
| !!! | AATGATTTTGAATTTTCATT+TGG | + | chr1_3:50526826-50526845 | Msa0123400:intron | 15.0% |
| !!! | ATGATTTTGAATTTTCATTT+GGG | + | chr1_3:50526827-50526846 | Msa0123400:intron | 15.0% |
| !! | AATACAATTTAACCTTAAAT+TGG | + | chr1_3:50527071-50527090 | Msa0123400:intron | 15.0% |
| !! | ATACAATTTAACCTTAAATT+GGG | + | chr1_3:50527072-50527091 | Msa0123400:intron | 15.0% |
| !!! | TTGAATCTTAATAAGATTTT+AGG | + | chr1_3:50527645-50527664 | Msa0123400:intron | 15.0% |
| !! | GTCATTATTAGAAATAATTA+TGG | + | chr1_3:50528603-50528622 | Msa0123400:intron | 15.0% |
| !!! | GATTAAATTTTCAATGCAAT+AGG | + | chr1_3:50527036-50527055 | Msa0123400:intron | 20.0% |
| !! | AATCATATTTATTAAGCATC+TGG | + | chr1_3:50527497-50527516 | Msa0123400:intron | 20.0% |
| !!! | AATCTTAATAAGATTTTAGG+TGG | + | chr1_3:50527648-50527667 | Msa0123400:intron | 20.0% |
| !!! | TGTTGAATCTATTTTTTTCT+TGG | + | chr1_3:50527873-50527892 | Msa0123400:intron | 20.0% |
| !!! | ATTTTTTATCTAATTCAGGT+TGG | - | chr1_3:50528001-50528020 | None:intergenic | 20.0% |
| !!! | CTATTTCAAATGGATTAAAT+TGG | - | chr1_3:50528284-50528303 | None:intergenic | 20.0% |
| !!! | CAATTTAATCCATTTGAAAT+AGG | + | chr1_3:50528282-50528301 | Msa0123400:intron | 20.0% |
| !!! | TACAGCTATTGTTTTATATT+CGG | - | chr1_3:50528330-50528349 | None:intergenic | 20.0% |
| !!! | TATATTTGCTACTAAATTAG+AGG | + | chr1_3:50528535-50528554 | Msa0123400:intron | 20.0% |
| !! | TAAACAGAATTGACAATAAA+AGG | - | chr1_3:50528707-50528726 | None:intergenic | 20.0% |
| !!! | TGATCTTCATTTTTTATTGT+AGG | + | chr1_3:50528790-50528809 | Msa0123400:intron | 20.0% |
| !!! | TCACTTTATTGTTTTTGAAT+TGG | + | chr1_3:50529011-50529030 | Msa0123400:intron | 20.0% |
| !! | AAAAATCATCATGTTACTAT+AGG | + | chr1_3:50529109-50529128 | Msa0123400:intron | 20.0% |
| !! | AAAATCATCATGTTACTATA+GGG | + | chr1_3:50529110-50529129 | Msa0123400:intron | 20.0% |
| !! | TTTATGCAACAACAAAAAAT+TGG | + | chr1_3:50529399-50529418 | Msa0123400:three_prime_UTR | 20.0% |
| !!! | TAGAACATTTTCACTTTATT+GGG | - | chr1_3:50529582-50529601 | None:intergenic | 20.0% |
| !!! | ATAGAACATTTTCACTTTAT+TGG | - | chr1_3:50529583-50529602 | None:intergenic | 20.0% |
| !! | TCTGAAACAGAGTAAAATTT+GGG | + | chr1_3:50526473-50526492 | Msa0123400:five_prime_UTR | 25.0% |
| !!! | AGAGTAAAATTTGGGATTTT+AGG | + | chr1_3:50526481-50526500 | Msa0123400:five_prime_UTR | 25.0% |
| !!! | GAGTAAAATTTGGGATTTTA+GGG | + | chr1_3:50526482-50526501 | Msa0123400:five_prime_UTR | 25.0% |
| ! | CGAAAAGTAACATGAATTAA+GGG | - | chr1_3:50526568-50526587 | None:intergenic | 25.0% |
| ! | TCGAAAAGTAACATGAATTA+AGG | - | chr1_3:50526569-50526588 | None:intergenic | 25.0% |
| !!! | ATTTTTAGGTCAAAAAAGTG+CGG | + | chr1_3:50526646-50526665 | Msa0123400:intron | 25.0% |
| !!! | ACTTTTTCAATTTTAGCTTC+TGG | + | chr1_3:50526752-50526771 | Msa0123400:intron | 25.0% |
| !!! | CTTTTTCAATTTTAGCTTCT+GGG | + | chr1_3:50526753-50526772 | Msa0123400:intron | 25.0% |
| ! | TTTCAATGCAATAGGATAAT+TGG | + | chr1_3:50527044-50527063 | Msa0123400:intron | 25.0% |
| ! | TTCAATGCAATAGGATAATT+GGG | + | chr1_3:50527045-50527064 | Msa0123400:intron | 25.0% |
| !! | AGTATATTTAGTTTCTCTGT+AGG | + | chr1_3:50527367-50527386 | Msa0123400:intron | 25.0% |
| ! | ATTCAGACATAAAATTCCAA+TGG | - | chr1_3:50527400-50527419 | None:intergenic | 25.0% |
| ! | ATATTTATTAAGCATCTGGT+CGG | + | chr1_3:50527501-50527520 | Msa0123400:intron | 25.0% |
| ! | CCATAAATGAACACAAATTA+TGG | - | chr1_3:50527532-50527551 | None:intergenic | 25.0% |
| !! | CCATAATTTGTGTTCATTTA+TGG | + | chr1_3:50527529-50527548 | Msa0123400:intron | 25.0% |
| ! | AATTTGTGTTCATTTATGGT+CGG | + | chr1_3:50527533-50527552 | Msa0123400:intron | 25.0% |
| ! | TTTGAATTACTGAGAAGAAA+AGG | + | chr1_3:50527683-50527702 | Msa0123400:intron | 25.0% |
| !!! | CACTTTTTACATCCTTATTA+TGG | + | chr1_3:50528121-50528140 | Msa0123400:intron | 25.0% |
| !!! | ATAGTACTTTTTAGTGACTT+TGG | + | chr1_3:50528152-50528171 | Msa0123400:intron | 25.0% |
| ! | ATGATAGAAGTGATTAAAAC+AGG | + | chr1_3:50528209-50528228 | Msa0123400:intron | 25.0% |
| ! | CATATGATATAATTGAGTCT+AGG | - | chr1_3:50528367-50528386 | None:intergenic | 25.0% |
| !! | TCTAGAACAATAAATTACCA+GGG | - | chr1_3:50528431-50528450 | None:intergenic | 25.0% |
| !!! | TTCTAGAACAATAAATTACC+AGG | - | chr1_3:50528432-50528451 | None:intergenic | 25.0% |
| ! | GAAGTTTATATTCACATTTC+CGG | + | chr1_3:50528449-50528468 | Msa0123400:intron | 25.0% |
| ! | TTTAGTAGCAAATATAAACC+TGG | - | chr1_3:50528531-50528550 | None:intergenic | 25.0% |
| !! | TGTTTTATCAACATGAAACT+TGG | - | chr1_3:50528643-50528662 | None:intergenic | 25.0% |
| ! | TTGACAATAAAAGGCTTAAA+AGG | - | chr1_3:50528698-50528717 | None:intergenic | 25.0% |
| ! | TTGTCAATTCTGTTTAATCA+TGG | + | chr1_3:50528711-50528730 | Msa0123400:intron | 25.0% |
| ! | GAAGTCATTGAAATGTTTAT+AGG | - | chr1_3:50528850-50528869 | None:intergenic | 25.0% |
| ! | ATATTTCCATTTATCTCAGA+TGG | + | chr1_3:50528908-50528927 | Msa0123400:intron | 25.0% |
| ! | TATTTCCATTTATCTCAGAT+GGG | + | chr1_3:50528909-50528928 | Msa0123400:intron | 25.0% |
| ! | TACATATTTGACATGATTTG+CGG | - | chr1_3:50529066-50529085 | None:intergenic | 25.0% |
| ! | AAATCATCATGTTACTATAG+GGG | + | chr1_3:50529111-50529130 | Msa0123400:intron | 25.0% |
| ! | TCCTCATTCTATGTATATAT+TGG | + | chr1_3:50529334-50529353 | Msa0123400:three_prime_UTR | 25.0% |
| !!! | GCAAATTTTTTTTCTTTCCA+AGG | - | chr1_3:50529560-50529579 | None:intergenic | 25.0% |
| ! | GTCTGAAACAGAGTAAAATT+TGG | + | chr1_3:50526472-50526491 | Msa0123400:five_prime_UTR | 30.0% |
| ATCAAATCGTTCCTTGAAAA+TGG | + | chr1_3:50526526-50526545 | Msa0123400:exon | 30.0% | |
| GAATTAAGGGTTATTACCTT+CGG | - | chr1_3:50526555-50526574 | None:intergenic | 30.0% | |
| AATCCAGTATAGTCAAAGAA+TGG | - | chr1_3:50526781-50526800 | None:intergenic | 30.0% | |
| CAAGTAAATGACCCAATTTA+AGG | - | chr1_3:50527086-50527105 | None:intergenic | 30.0% | |
| ACAAGTTATTTACAAGATCC+TGG | + | chr1_3:50527170-50527189 | Msa0123400:CDS | 30.0% | |
| AATGTATTAAAGGGATTCGA+AGG | + | chr1_3:50527203-50527222 | Msa0123400:CDS | 30.0% | |
| ATGTATTAAAGGGATTCGAA+GGG | + | chr1_3:50527204-50527223 | Msa0123400:CDS | 30.0% | |
| !!! | CTGTAGTTTTGATTATCCTA+AGG | + | chr1_3:50527420-50527439 | Msa0123400:intron | 30.0% |
| TTGATTATCCTAAGGAAGAT+AGG | + | chr1_3:50527428-50527447 | Msa0123400:intron | 30.0% | |
| TATTTATTAAGCATCTGGTC+GGG | + | chr1_3:50527502-50527521 | Msa0123400:intron | 30.0% | |
| !!! | TGCTGTTTTGTTGTTATTCA+TGG | + | chr1_3:50527838-50527857 | Msa0123400:intron | 30.0% |
| TAATGAAAAGAGCCTATCTT+CGG | - | chr1_3:50527928-50527947 | None:intergenic | 30.0% | |
| !! | TGTTTCTGATTTTCAGTGAT+AGG | + | chr1_3:50527972-50527991 | Msa0123400:intron | 30.0% |
| CTAATCACACTGTTATTACT+TGG | - | chr1_3:50528056-50528075 | None:intergenic | 30.0% | |
| CAAGTAATAACAGTGTGATT+AGG | + | chr1_3:50528054-50528073 | Msa0123400:intron | 30.0% | |
| TTACATCCTTATTATGGAAG+TGG | + | chr1_3:50528127-50528146 | Msa0123400:intron | 30.0% | |
| GTTTAGCACATTAATCTTCT+AGG | + | chr1_3:50528186-50528205 | Msa0123400:intron | 30.0% | |
| TAGAAGTGATTAAAACAGGT+TGG | + | chr1_3:50528213-50528232 | Msa0123400:intron | 30.0% | |
| CATAAGTTAAGAGTTTACCA+TGG | + | chr1_3:50528239-50528258 | Msa0123400:intron | 30.0% | |
| TAAATGCGTCCTATTTCAAA+TGG | - | chr1_3:50528294-50528313 | None:intergenic | 30.0% | |
| ATGATATAATTGAGTCTAGG+AGG | - | chr1_3:50528364-50528383 | None:intergenic | 30.0% | |
| ! | AGAGCATTTAATTTCACAAC+CGG | - | chr1_3:50528471-50528490 | None:intergenic | 30.0% |
| AATTAAATGCTCTACATGAG+TGG | + | chr1_3:50528478-50528497 | Msa0123400:intron | 30.0% | |
| GCAAAGTTGAAATAAATGAC+AGG | - | chr1_3:50528509-50528528 | None:intergenic | 30.0% | |
| TCATTTATTTCAACTTTGCC+AGG | + | chr1_3:50528510-50528529 | Msa0123400:intron | 30.0% | |
| TAGAAATAATTATGGCTGAC+AGG | + | chr1_3:50528611-50528630 | Msa0123400:intron | 30.0% | |
| ! | AAAAGGAGGGATCATTTTAT+GGG | - | chr1_3:50528681-50528700 | None:intergenic | 30.0% |
| ! | TAAAAGGAGGGATCATTTTA+TGG | - | chr1_3:50528682-50528701 | None:intergenic | 30.0% |
| CAATAAAAGGCTTAAAAGGA+GGG | - | chr1_3:50528694-50528713 | None:intergenic | 30.0% | |
| ACAATAAAAGGCTTAAAAGG+AGG | - | chr1_3:50528695-50528714 | None:intergenic | 30.0% | |
| ! | CAACTTTCTGCTAAACTTTT+TGG | + | chr1_3:50529258-50529277 | Msa0123400:three_prime_UTR | 30.0% |
| GCCAATATATACATAGAATG+AGG | - | chr1_3:50529338-50529357 | None:intergenic | 30.0% | |
| AAACATCAACTTCTACAAGT+TGG | - | chr1_3:50529498-50529517 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTTTCCAAGGTAG+TGG | - | chr1_3:50529554-50529573 | None:intergenic | 30.0% |
| GAACGATTTGATTGAGGATT+CGG | - | chr1_3:50526518-50526537 | None:intergenic | 35.0% | |
| TTCAAGGAACGATTTGATTG+AGG | - | chr1_3:50526524-50526543 | None:intergenic | 35.0% | |
| ! | TTTTGCTCTTCTACTAAGCA+AGG | - | chr1_3:50526696-50526715 | None:intergenic | 35.0% |
| GCTTCGTAATATTGAAAAGC+AGG | + | chr1_3:50526727-50526746 | Msa0123400:CDS | 35.0% | |
| GTTCCATTCTTTGACTATAC+TGG | + | chr1_3:50526775-50526794 | Msa0123400:intron | 35.0% | |
| ACAGTGTGGCAATGTATTAA+AGG | + | chr1_3:50527193-50527212 | Msa0123400:CDS | 35.0% | |
| CAGTGTGGCAATGTATTAAA+GGG | + | chr1_3:50527194-50527213 | Msa0123400:CDS | 35.0% | |
| TTACTCATCCTATCTTCCTT+AGG | - | chr1_3:50527439-50527458 | None:intergenic | 35.0% | |
| TCTAGCTAAAAGCTGAATAG+AGG | - | chr1_3:50527814-50527833 | None:intergenic | 35.0% | |
| AATGAAAAGAGCCTATCTTC+GGG | - | chr1_3:50527927-50527946 | None:intergenic | 35.0% | |
| !! | ACACTGTTATTACTTGGTGT+TGG | - | chr1_3:50528050-50528069 | None:intergenic | 35.0% |
| ATAACAGTGTGATTAGGTCA+TGG | + | chr1_3:50528060-50528079 | Msa0123400:intron | 35.0% | |
| CTATGACCACTTCCATAATA+AGG | - | chr1_3:50528136-50528155 | None:intergenic | 35.0% | |
| AGAGTTTACCATGGAATATC+TGG | + | chr1_3:50528248-50528267 | Msa0123400:intron | 35.0% | |
| TGAAATAGGACGCATTTAAG+AGG | + | chr1_3:50528296-50528315 | Msa0123400:intron | 35.0% | |
| ! | ATCATTTTATGGGATAGGAG+AGG | - | chr1_3:50528671-50528690 | None:intergenic | 35.0% |
| GGTGGAACAATTTATGCAAA+TGG | + | chr1_3:50528962-50528981 | Msa0123400:CDS | 35.0% | |
| TTCAATCACAATGTCATGTC+AGG | - | chr1_3:50529222-50529241 | None:intergenic | 35.0% | |
| ! | TATCTAATGCAGGTTTTTCC+AGG | - | chr1_3:50529294-50529313 | None:intergenic | 35.0% |
| TGGAAAAACCTGCATTAGAT+AGG | + | chr1_3:50529293-50529312 | Msa0123400:three_prime_UTR | 35.0% | |
| ! | TAGTCGTGGATTTTCTACTT+AGG | + | chr1_3:50529364-50529383 | Msa0123400:three_prime_UTR | 35.0% |
| GATCAAACTTTGTTCTGTAC+AGG | - | chr1_3:50529474-50529493 | None:intergenic | 35.0% | |
| !! | AAGTTGATGTTTACCGTTTG+CGG | + | chr1_3:50529506-50529525 | Msa0123400:three_prime_UTR | 35.0% |
| TCCTTGAAAATGGAATCCGA+AGG | + | chr1_3:50526536-50526555 | Msa0123400:exon | 40.0% | |
| ! | ACCTTCGGATTCCATTTTCA+AGG | - | chr1_3:50526540-50526559 | None:intergenic | 40.0% |
| CTCGACACAGGTTTATGATA+TGG | + | chr1_3:50527145-50527164 | Msa0123400:intron | 40.0% | |
| TCTACCTGTTCTTCAGTACT+TGG | + | chr1_3:50527334-50527353 | Msa0123400:intron | 40.0% | |
| !! | ACTACCAAGTACTGAAGAAC+AGG | - | chr1_3:50527341-50527360 | None:intergenic | 40.0% |
| TGGTCGGAAAAGCAAAATCA+TGG | + | chr1_3:50527549-50527568 | Msa0123400:intron | 40.0% | |
| GGTCGGAAAAGCAAAATCAT+GGG | + | chr1_3:50527550-50527569 | Msa0123400:intron | 40.0% | |
| TGGAACTCAGATGTATTCAG+AGG | - | chr1_3:50527758-50527777 | None:intergenic | 40.0% | |
| ! | TTTTTCTTGGCAGCTTGAAG+CGG | + | chr1_3:50527886-50527905 | Msa0123400:intron | 40.0% |
| !! | ACAAGAAGTTCTAGAAACCC+TGG | + | chr1_3:50528411-50528430 | Msa0123400:intron | 40.0% |
| AAATGCTCTACATGAGTGGA+AGG | + | chr1_3:50528482-50528501 | Msa0123400:intron | 40.0% | |
| ! | GAGGGATCATTTTATGGGAT+AGG | - | chr1_3:50528676-50528695 | None:intergenic | 40.0% |
| ATGGTCCATGTATCAAGTGT+AGG | + | chr1_3:50528730-50528749 | Msa0123400:intron | 40.0% | |
| AGATGCCTACACTTGATACA+TGG | - | chr1_3:50528738-50528757 | None:intergenic | 40.0% | |
| TGTAGGCATCTTATCTCAAC+AGG | + | chr1_3:50528747-50528766 | Msa0123400:intron | 40.0% | |
| GTAGGCATCTTATCTCAACA+GGG | + | chr1_3:50528748-50528767 | Msa0123400:intron | 40.0% | |
| ! | GATCTCCCATCTGAGATAAA+TGG | - | chr1_3:50528917-50528936 | None:intergenic | 40.0% |
| ! | TCAGATGGGAGATCAGATTT+TGG | + | chr1_3:50528923-50528942 | Msa0123400:intron | 40.0% |
| TATAGGGGTAAACCGAAGAA+AGG | + | chr1_3:50529126-50529145 | Msa0123400:intron | 40.0% | |
| GACATTGTGATTGAACATGC+TGG | + | chr1_3:50529227-50529246 | Msa0123400:exon | 40.0% | |
| !!! | CTTTTTGGAATAGAAGAGCC+TGG | + | chr1_3:50529273-50529292 | Msa0123400:three_prime_UTR | 40.0% |
| GTAGAAAATCCACGACTACT+AGG | - | chr1_3:50529362-50529381 | None:intergenic | 40.0% | |
| ! | TGTTTACCGTTTGCGGTTTT+TGG | + | chr1_3:50529513-50529532 | Msa0123400:three_prime_UTR | 40.0% |
| AGGAAGCCAACATTGCTGAA+GGG | - | chr1_3:50526676-50526695 | None:intergenic | 45.0% | |
| AAGGAAGCCAACATTGCTGA+AGG | - | chr1_3:50526677-50526696 | None:intergenic | 45.0% | |
| !! | CAGAAGTGTCAGTGCTACAA+AGG | + | chr1_3:50526993-50527012 | Msa0123400:intron | 45.0% |
| ! | GCGTATTTTGTTCTCGACAC+AGG | + | chr1_3:50527133-50527152 | Msa0123400:intron | 45.0% |
| TTACAAGATCCTGGACAGTG+TGG | + | chr1_3:50527179-50527198 | Msa0123400:CDS | 45.0% | |
| AATACATTGCCACACTGTCC+AGG | - | chr1_3:50527191-50527210 | None:intergenic | 45.0% | |
| CAGTGTTCTTTGTTGACGAC+AGG | - | chr1_3:50527232-50527251 | None:intergenic | 45.0% | |
| !! | CTCTGTAGGAGAAGTACCAT+TGG | + | chr1_3:50527381-50527400 | Msa0123400:intron | 45.0% |
| TACTCACTGTGATACTGTGC+TGG | + | chr1_3:50527599-50527618 | Msa0123400:intron | 45.0% | |
| ACTCACTGTGATACTGTGCT+GGG | + | chr1_3:50527600-50527619 | Msa0123400:intron | 45.0% | |
| GAAAGTTTCAGCCCGAAGAT+AGG | + | chr1_3:50527913-50527932 | Msa0123400:CDS | 45.0% | |
| GAAAATCAGAAACACACCGC+TGG | - | chr1_3:50527966-50527985 | None:intergenic | 45.0% | |
| CCATCAGACCAGATATTCCA+TGG | - | chr1_3:50528259-50528278 | None:intergenic | 45.0% | |
| CCATGGAATATCTGGTCTGA+TGG | + | chr1_3:50528256-50528275 | Msa0123400:intron | 45.0% | |
| TTTGGTCCTGGTCGATCAAA+AGG | + | chr1_3:50528941-50528960 | Msa0123400:CDS | 45.0% | |
| GGTAAACCGAAGAAAGGAAG+AGG | + | chr1_3:50529132-50529151 | Msa0123400:CDS | 45.0% | |
| AAGAGATGCGAAGAGAGCAA+GGG | + | chr1_3:50529161-50529180 | Msa0123400:CDS | 45.0% | |
| ACCTGCATTAGATAGGCCAT+TGG | + | chr1_3:50529300-50529319 | Msa0123400:three_prime_UTR | 45.0% | |
| ACCAATGGCCTATCTAATGC+AGG | - | chr1_3:50529304-50529323 | None:intergenic | 45.0% | |
| GAGGAATTGCAGAGAACCAA+TGG | - | chr1_3:50529319-50529338 | None:intergenic | 45.0% | |
| !! | ATATTGGCTCCTAGTAGTCG+TGG | + | chr1_3:50529350-50529369 | Msa0123400:three_prime_UTR | 45.0% |
| !! | TTACCGTTTGCGGTTTTTGG+TGG | + | chr1_3:50529516-50529535 | Msa0123400:three_prime_UTR | 45.0% |
| !!! | TACCGTTTGCGGTTTTTGGT+GGG | + | chr1_3:50529517-50529536 | Msa0123400:three_prime_UTR | 45.0% |
| TTCCCACCAAAAACCGCAAA+CGG | - | chr1_3:50529522-50529541 | None:intergenic | 45.0% | |
| ! | AATCCAGAGTACCACTACCT+TGG | + | chr1_3:50529540-50529559 | Msa0123400:three_prime_UTR | 45.0% |
| ! | TTTCCAAGGTAGTGGTACTC+TGG | - | chr1_3:50529546-50529565 | None:intergenic | 45.0% |
| !! | TCAAATAAAAAATTAATAAA+AGG | - | chr1_3:50526868-50526887 | None:intergenic | 5.0% |
| !! | TAAAAATAAATAGTAATTTA+TGG | + | chr1_3:50527780-50527799 | Msa0123400:intron | 5.0% |
| GGTGAACCCTTCAGCAATGT+TGG | + | chr1_3:50526667-50526686 | Msa0123400:CDS | 50.0% | |
| !! | TACTTGGTGTTGGTGCTCAC+TGG | - | chr1_3:50528040-50528059 | None:intergenic | 50.0% |
| !! | GGGAGATCAGATTTTGGTCC+TGG | + | chr1_3:50528929-50528948 | Msa0123400:CDS | 50.0% |
| ! | GTTCCACCTTTTGATCGACC+AGG | - | chr1_3:50528950-50528969 | None:intergenic | 50.0% |
| CTTGCTCTCTTCGCATCTCT+TGG | - | chr1_3:50529162-50529181 | None:intergenic | 50.0% | |
| CAAGAGATGCGAAGAGAGCA+AGG | + | chr1_3:50529160-50529179 | Msa0123400:CDS | 50.0% | |
| ATCTTCAGTGACCTCGCCAG+CGG | + | chr1_3:50527947-50527966 | Msa0123400:CDS | 55.0% | |
| !! | TTGGTGTTGGTGCTCACTGG+TGG | - | chr1_3:50528037-50528056 | None:intergenic | 55.0% |
| TAGGCTGAAGAGCTTGCAGC+TGG | + | chr1_3:50528809-50528828 | Msa0123400:intron | 55.0% | |
| GGTCCTGGTCGATCAAAAGG+TGG | + | chr1_3:50528944-50528963 | Msa0123400:CDS | 55.0% | |
| GGCGCACCTCTTCCTTTCTT+CGG | - | chr1_3:50529141-50529160 | None:intergenic | 55.0% | |
| TCAGAAACACACCGCTGGCG+AGG | - | chr1_3:50527961-50527980 | None:intergenic | 60.0% | |
| GAGCTTGCAGCTGGACGAGA+CGG | + | chr1_3:50528818-50528837 | Msa0123400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 50526465 | 50529647 | 50526465 | ID=Msa0123400;Name=Msa0123400 |
| chr1_3 | mRNA | 50526465 | 50529647 | 50526465 | ID=Msa0123400-mRNA-1;Parent=Msa0123400;Name=Msa0123400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=80|1|1|1|1|1|7|411|157 |
| chr1_3 | exon | 50526465 | 50526557 | 50526465 | ID=Msa0123400-mRNA-1:exon:15425;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50526654 | 50526748 | 50526654 | ID=Msa0123400-mRNA-1:exon:15426;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50527155 | 50527255 | 50527155 | ID=Msa0123400-mRNA-1:exon:15427;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50527899 | 50527968 | 50527899 | ID=Msa0123400-mRNA-1:exon:15428;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50528812 | 50528839 | 50528812 | ID=Msa0123400-mRNA-1:exon:15429;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50528927 | 50528987 | 50528927 | ID=Msa0123400-mRNA-1:exon:15430;Parent=Msa0123400-mRNA-1 |
| chr1_3 | exon | 50529131 | 50529647 | 50529131 | ID=Msa0123400-mRNA-1:exon:15431;Parent=Msa0123400-mRNA-1 |
| chr1_3 | five_prime_UTR | 50526465 | 50526544 | 50526465 | ID=Msa0123400-mRNA-1:five_prime_utr;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50526545 | 50526557 | 50526545 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50526654 | 50526748 | 50526654 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50527155 | 50527255 | 50527155 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50527899 | 50527968 | 50527899 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50528812 | 50528839 | 50528812 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50528927 | 50528987 | 50528927 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | CDS | 50529131 | 50529236 | 50529131 | ID=Msa0123400-mRNA-1:cds;Parent=Msa0123400-mRNA-1 |
| chr1_3 | three_prime_UTR | 50529237 | 50529647 | 50529237 | ID=Msa0123400-mRNA-1:three_prime_utr;Parent=Msa0123400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
