AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115590 MtrunA17_Chr7g0246991 100.000 90 0 0 1 90 1 90 2.73e-65 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115590 AT4G00585.1 83.908 87 11 2 4 90 2 85 2.47e-48 148

Find 54 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACGCGATTGATCGAATT+AGG 0.150025 7_3:+63075470 Msa1115590:five_prime_UTR
GACAATTGTGTTTGGGATTT+GGG 0.171621 7_3:-63075441 None:intergenic
CTTGTTCAAATTGGCATTAC+TGG 0.204365 7_3:+63079473 Msa1115590:three_prime_UTR
CTGCTCATGCCTGGATTCTT+TGG 0.236633 7_3:+63079446 Msa1115590:three_prime_UTR
TTCGTAGTCTTTGTAGTCTT+TGG 0.237115 7_3:-63079230 None:intergenic
CAAAGTTCTTGCACCACATT+TGG 0.239785 7_3:-63079204 None:intergenic
AGACAATTGTGTTTGGGATT+TGG 0.250702 7_3:-63075442 None:intergenic
TTTGGAGAGCTTGTTCAAAT+TGG 0.286982 7_3:+63079464 Msa1115590:three_prime_UTR
GTGTTGCGTTTCCAGTGTTT+AGG 0.292140 7_3:-63075625 None:intergenic
GAGCCAATGGAGGAGATTTC+AGG 0.296342 7_3:+63075563 Msa1115590:CDS
TGTTGCGTTTCCAGTGTTTA+GGG 0.348623 7_3:-63075624 None:intergenic
AAACGCGATTGATCGAATTA+GGG 0.366660 7_3:+63075471 Msa1115590:five_prime_UTR
GAGATTTCAGGTACAAGGTT+TGG 0.375661 7_3:+63075575 Msa1115590:CDS
CAAATGTGGTGCAAGAACTT+TGG 0.398822 7_3:+63079205 Msa1115590:CDS
TGGGAAGGGATTGGACGAAC+AGG 0.407466 7_3:-63079184 None:intergenic
CACCACATTTGGGAAGGGAT+TGG 0.408752 7_3:-63079193 None:intergenic
TTAAATAAGCTGCTCATGCC+TGG 0.417782 7_3:+63079437 Msa1115590:three_prime_UTR
TGTCAATGTTATGTACGAAT+TGG 0.426612 7_3:+63079346 Msa1115590:three_prime_UTR
GTGAGGAATGAGAAGGAGGA+AGG 0.436396 7_3:-63075413 None:intergenic
TTTAGCTGAGAGTTTGAAGA+TGG 0.461581 7_3:-63075686 None:intergenic
AAAGTTCTTGCACCACATTT+GGG 0.481534 7_3:-63079203 None:intergenic
CACGGTAATGGCGGAGCCAA+TGG 0.484941 7_3:+63075550 Msa1115590:CDS
TGAGGAATGAGAAGGAGGAA+GGG 0.488410 7_3:-63075412 None:intergenic
TAGCTGAGAGTTTGAAGATG+GGG 0.490985 7_3:-63075684 None:intergenic
GTCAATGTTATGTACGAATT+GGG 0.491267 7_3:+63079347 Msa1115590:three_prime_UTR
GTACCTGAAATCTCCTCCAT+TGG 0.492681 7_3:-63075566 None:intergenic
AACACTGCCATCGCTATGTT+CGG 0.493133 7_3:+63075643 Msa1115590:CDS
ATCAATTGCATCAGTTGTGT+GGG 0.494134 7_3:+63079265 Msa1115590:three_prime_UTR
GTTATGTACGAATTGGGTCT+AGG 0.507413 7_3:+63079353 Msa1115590:three_prime_UTR
TGGAGGAGATTTCAGGTACA+AGG 0.512900 7_3:+63075570 Msa1115590:CDS
TATCAATTGCATCAGTTGTG+TGG 0.513069 7_3:+63079264 Msa1115590:three_prime_UTR
TTGGGATTTGGGAGAAAGTG+AGG 0.516304 7_3:-63075430 None:intergenic
TTAGCTGAGAGTTTGAAGAT+GGG 0.520876 7_3:-63075685 None:intergenic
GGTGGAGCAGATCACGGTAA+TGG 0.524664 7_3:+63075538 Msa1115590:CDS
TACAAGGTTTGGAGTATGAC+TGG 0.533279 7_3:+63075586 Msa1115590:CDS
TTCTTGCACCACATTTGGGA+AGG 0.536045 7_3:-63079199 None:intergenic
GAAAGTGAGGAATGAGAAGG+AGG 0.543027 7_3:-63075417 None:intergenic
CTCACTGTCGCCCTAAACAC+TGG 0.552111 7_3:+63075614 Msa1115590:CDS
GTCCAATCCCTTCCCAAATG+TGG 0.562513 7_3:+63079191 Msa1115590:CDS
ACAAGCTCTCCAAAGAATCC+AGG 0.562812 7_3:-63079455 None:intergenic
CTTCAATGCTGTTCATAACA+AGG 0.565801 7_3:-63079314 None:intergenic
GGGAAGGGATTGGACGAACA+GGG 0.568151 7_3:-63079183 None:intergenic
TCTTGCACCACATTTGGGAA+GGG 0.579669 7_3:-63079198 None:intergenic
GGAGAAAGTGAGGAATGAGA+AGG 0.585339 7_3:-63075420 None:intergenic
CAAACTCTCAGCTAAACTTG+AGG 0.608144 7_3:+63075693 Msa1115590:CDS
ATTGGACGAACAGGGTGATG+TGG 0.616151 7_3:-63079175 None:intergenic
GCCGAGTACAGAAGAAAATG+AGG 0.620289 7_3:-63079555 None:intergenic
GGAGGTGGTGGAGCAGATCA+CGG 0.622572 7_3:+63075532 Msa1115590:CDS
GGTAATGGCGGAGCCAATGG+AGG 0.641548 7_3:+63075553 Msa1115590:CDS
GACGATACCGAACATAGCGA+TGG 0.647243 7_3:-63075650 None:intergenic
GGAGCAGATCACGGTAATGG+CGG 0.651187 7_3:+63075541 Msa1115590:CDS
AAGGTTTGGAGTATGACTGG+TGG 0.690490 7_3:+63075589 Msa1115590:CDS
CAGTGTTTAGGGCGACAGTG+AGG 0.700609 7_3:-63075613 None:intergenic
TGAAGATGGGGATACAAACG+AGG 0.746465 7_3:-63075672 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAAAAACAGAAAATA+AGG - chr7_3:63078804-63078823 None:intergenic 10.0%
!! AATATAATATATACTAGTTA+TGG - chr7_3:63079117-63079136 None:intergenic 10.0%
!! ATAACTAGTATATATTATAT+TGG + chr7_3:63079116-63079135 Msa1115590:intron 10.0%
!!! TGAAATTTTAGAACAAAAAT+GGG + chr7_3:63075511-63075530 Msa1115590:exon 15.0%
!!! TTATTGTTGTTGTTATTATT+TGG + chr7_3:63075919-63075938 Msa1115590:intron 15.0%
!! AATTATTAAAGAGAAAATTG+AGG + chr7_3:63076760-63076779 Msa1115590:intron 15.0%
!!! AAAATTGGAAAATTTTTACT+TGG - chr7_3:63077532-63077551 None:intergenic 15.0%
!!! CTTTTAAAAAAATAATGCAA+TGG - chr7_3:63077830-63077849 None:intergenic 15.0%
!!! TATTTTTTTAAAAGCATTAC+AGG + chr7_3:63077836-63077855 Msa1115590:intron 15.0%
!! ATATGAAATAATGATATGTA+GGG - chr7_3:63078703-63078722 None:intergenic 15.0%
!! AATATGAAATAATGATATGT+AGG - chr7_3:63078704-63078723 None:intergenic 15.0%
!!! CTGAAATTTTAGAACAAAAA+TGG + chr7_3:63075510-63075529 Msa1115590:exon 20.0%
!! TGTAATATGGAATTGAATAT+TGG + chr7_3:63076652-63076671 Msa1115590:intron 20.0%
!! GTAATATGGAATTGAATATT+GGG + chr7_3:63076653-63076672 Msa1115590:intron 20.0%
!!! TTTAGTGATTTTGTCATATA+TGG + chr7_3:63076817-63076836 Msa1115590:intron 20.0%
!!! CTAAAATTCTTTTAATGTTC+TGG - chr7_3:63076914-63076933 None:intergenic 20.0%
!!! AATTTTAGATGTCTATCTTT+AGG + chr7_3:63076926-63076945 Msa1115590:intron 20.0%
!! GTTGAATTCAAAATTTCAAA+TGG + chr7_3:63077110-63077129 Msa1115590:intron 20.0%
!! CATTACTATCAATAAAAAAC+AGG - chr7_3:63077254-63077273 None:intergenic 20.0%
!!! GTTTTTTATTGATAGTAATG+AGG + chr7_3:63077254-63077273 Msa1115590:intron 20.0%
!!! TTCTTCTTTTAGGAATATTT+TGG + chr7_3:63077292-63077311 Msa1115590:intron 20.0%
!!! AATTTGGCAAATTTTGATTT+TGG + chr7_3:63077385-63077404 Msa1115590:intron 20.0%
!! ATACTATTATTTGTAACTGT+AGG + chr7_3:63077483-63077502 Msa1115590:intron 20.0%
!! TACTATTATTTGTAACTGTA+GGG + chr7_3:63077484-63077503 Msa1115590:intron 20.0%
!!! TTTTTCTTCGCTATAAAAAT+TGG - chr7_3:63077547-63077566 None:intergenic 20.0%
!!! TTTCCTTTTGCAAAAAATAT+AGG + chr7_3:63077589-63077608 Msa1115590:intron 20.0%
!! TCTTTGTCTATTCAAAAAAA+TGG + chr7_3:63078089-63078108 Msa1115590:intron 20.0%
!! TGTTAAAGAACACTTAAATT+GGG - chr7_3:63078205-63078224 None:intergenic 20.0%
!! ATGATCTGTATAATATCAAT+AGG + chr7_3:63078822-63078841 Msa1115590:intron 20.0%
!! CAAATAATTGGTAAAATTTC+TGG - chr7_3:63078931-63078950 None:intergenic 20.0%
!!! ATTTTACCAATTATTTGCTT+TGG + chr7_3:63078934-63078953 Msa1115590:intron 20.0%
!! ACATGATATACAAAAATTTC+TGG - chr7_3:63079051-63079070 None:intergenic 20.0%
!!! GTATATCATGTTTTCTTTTT+TGG + chr7_3:63079060-63079079 Msa1115590:intron 20.0%
!!! GATTTTGTTCATATAACTTT+TGG + chr7_3:63079523-63079542 Msa1115590:three_prime_UTR 20.0%
!!! TCATATAACTTTTGGTTTAT+AGG + chr7_3:63079531-63079550 Msa1115590:three_prime_UTR 20.0%
!! GATTTTAGACAATTGTGTTT+GGG - chr7_3:63075451-63075470 None:intergenic 25.0%
!! TGATTTTAGACAATTGTGTT+TGG - chr7_3:63075452-63075471 None:intergenic 25.0%
!!! AATTTTAGAACAAAAATGGG+AGG + chr7_3:63075514-63075533 Msa1115590:exon 25.0%
! AAAATCAAAACATGGAAATC+TGG - chr7_3:63075761-63075780 None:intergenic 25.0%
! GGAGAAATAAAATCAAAACA+TGG - chr7_3:63075769-63075788 None:intergenic 25.0%
!! TAACGGAATCTTAATTTGAT+TGG + chr7_3:63075890-63075909 Msa1115590:intron 25.0%
!! TGGCAAAATTAAGAATGTTT+TGG + chr7_3:63075939-63075958 Msa1115590:intron 25.0%
!! GGCAAAATTAAGAATGTTTT+GGG + chr7_3:63075940-63075959 Msa1115590:intron 25.0%
! CAATGTTTACTTTGATACAT+TGG + chr7_3:63076013-63076032 Msa1115590:intron 25.0%
!! GATTTTGTGTTTAGAAAGTT+TGG + chr7_3:63076077-63076096 Msa1115590:intron 25.0%
!!! TAGCGACAATTTTAATCAAA+GGG + chr7_3:63076122-63076141 Msa1115590:intron 25.0%
! TATTTCCAACTCATAATTCA+AGG - chr7_3:63076281-63076300 None:intergenic 25.0%
! ATTCCATTATACAGTATGAT+AGG + chr7_3:63076517-63076536 Msa1115590:intron 25.0%
! TTCCATTATACAGTATGATA+GGG + chr7_3:63076518-63076537 Msa1115590:intron 25.0%
! TGACAAAATCACTAAAAACA+AGG - chr7_3:63076813-63076832 None:intergenic 25.0%
! GTTCTGGCATAAATTATTTA+TGG - chr7_3:63076898-63076917 None:intergenic 25.0%
! TCAAAAATCTCAAATCACAA+AGG - chr7_3:63077042-63077061 None:intergenic 25.0%
! ATAAAAGCAAACAATGACAA+TGG - chr7_3:63077151-63077170 None:intergenic 25.0%
!!! TTGTCATTGTTTGCTTTTAT+TGG + chr7_3:63077151-63077170 Msa1115590:intron 25.0%
! ACTATCAATAAAAAACAGGT+GGG - chr7_3:63077250-63077269 None:intergenic 25.0%
! TACTATCAATAAAAAACAGG+TGG - chr7_3:63077251-63077270 None:intergenic 25.0%
! GAAATTTCCATATCCTAAAA+AGG - chr7_3:63077339-63077358 None:intergenic 25.0%
!!! TTTTAGGATATGGAAATTTC+AGG + chr7_3:63077339-63077358 Msa1115590:intron 25.0%
!!! TGACCTATATTTTTTGCAAA+AGG - chr7_3:63077595-63077614 None:intergenic 25.0%
! GAGTGTAAATTAATTCCAAT+TGG + chr7_3:63077748-63077767 Msa1115590:intron 25.0%
! GTGTTAAAGAACACTTAAAT+TGG - chr7_3:63078206-63078225 None:intergenic 25.0%
! TGTTCAACTAATATTATGAC+AGG - chr7_3:63078464-63078483 None:intergenic 25.0%
! CTATTTATATGCACATAACT+TGG - chr7_3:63078884-63078903 None:intergenic 25.0%
! CTATTTCCAAAGCAAATAAT+TGG - chr7_3:63078943-63078962 None:intergenic 25.0%
!!! TTATTTGCTTTGGAAATAGA+TGG + chr7_3:63078944-63078963 Msa1115590:intron 25.0%
! TGATACATTGGTTAATATGC+TGG + chr7_3:63076025-63076044 Msa1115590:intron 30.0%
!! GTAGCGACAATTTTAATCAA+AGG + chr7_3:63076121-63076140 Msa1115590:intron 30.0%
!! AGCGACAATTTTAATCAAAG+GGG + chr7_3:63076123-63076142 Msa1115590:intron 30.0%
! CATATGAATCTAAAACACCA+CGG - chr7_3:63076196-63076215 None:intergenic 30.0%
!! TGGTGTTTTAGATTCATATG+TGG + chr7_3:63076196-63076215 Msa1115590:intron 30.0%
TGATTCCTTGAATTATGAGT+TGG + chr7_3:63076273-63076292 Msa1115590:intron 30.0%
! ATGAGTTGGAAATAGACTTT+AGG + chr7_3:63076287-63076306 Msa1115590:intron 30.0%
! TGAGTTGGAAATAGACTTTA+GGG + chr7_3:63076288-63076307 Msa1115590:intron 30.0%
!!! TTATTTTCTAGCTTATCTCG+TGG + chr7_3:63076352-63076371 Msa1115590:intron 30.0%
!!! CATTGATTTTCAGAGTTAGA+AGG + chr7_3:63076408-63076427 Msa1115590:intron 30.0%
! TCTAGCTTAGATGTGAAAAT+TGG + chr7_3:63076451-63076470 Msa1115590:intron 30.0%
AATCAACGTACTTAAACCAT+GGG - chr7_3:63076500-63076519 None:intergenic 30.0%
CTGCACAATCATATGTAATA+TGG + chr7_3:63076639-63076658 Msa1115590:intron 30.0%
ACACAAAACAAGATAGGAAT+AGG + chr7_3:63076732-63076751 Msa1115590:intron 30.0%
! TGATTTTGTCATATATGGAG+AGG + chr7_3:63076822-63076841 Msa1115590:intron 30.0%
TTTAGGCATGATTCATGATT+GGG + chr7_3:63076943-63076962 Msa1115590:intron 30.0%
AAATCTCAAATCACAAAGGA+TGG - chr7_3:63077038-63077057 None:intergenic 30.0%
TACAAACCTATGATAAGTAG+CGG + chr7_3:63077083-63077102 Msa1115590:intron 30.0%
!! AGAGTTTAGCTTCTTCTTTT+AGG + chr7_3:63077282-63077301 Msa1115590:intron 30.0%
!!! AAGAGAACCTTTTTAGGATA+TGG + chr7_3:63077329-63077348 Msa1115590:intron 30.0%
AAAATTTGCCAAATTCACAG+GGG - chr7_3:63077380-63077399 None:intergenic 30.0%
CAAAATTTGCCAAATTCACA+GGG - chr7_3:63077381-63077400 None:intergenic 30.0%
TCAAAATTTGCCAAATTCAC+AGG - chr7_3:63077382-63077401 None:intergenic 30.0%
! TCTTTGGGAAAAAGAAAAGA+GGG - chr7_3:63077682-63077701 None:intergenic 30.0%
! TTCTTTGGGAAAAAGAAAAG+AGG - chr7_3:63077683-63077702 None:intergenic 30.0%
CCTAACTAATCTCTTTCTTT+GGG - chr7_3:63077697-63077716 None:intergenic 30.0%
! TTTTTGTGATTCTCAGAAGT+GGG - chr7_3:63077965-63077984 None:intergenic 30.0%
!!! ACAAAGAACCTGTTTTTTCA+TGG - chr7_3:63078076-63078095 None:intergenic 30.0%
AAATTCTAGCACATTTCTTC+TGG - chr7_3:63078171-63078190 None:intergenic 30.0%
AGTGTTCTTTAACACAATAC+TGG + chr7_3:63078211-63078230 Msa1115590:intron 30.0%
! TTTCTCTTTGAGTGTTGTAT+AGG + chr7_3:63078520-63078539 Msa1115590:intron 30.0%
GCAGTTGTGTTTCATATTTA+CGG + chr7_3:63078647-63078666 Msa1115590:intron 30.0%
ATAATGATATGTAGGGACTA+GGG - chr7_3:63078696-63078715 None:intergenic 30.0%
AATAATGATATGTAGGGACT+AGG - chr7_3:63078697-63078716 None:intergenic 30.0%
TGTCAATGTTATGTACGAAT+TGG + chr7_3:63079346-63079365 Msa1115590:three_prime_UTR 30.0%
GTCAATGTTATGTACGAATT+GGG + chr7_3:63079347-63079366 Msa1115590:three_prime_UTR 30.0%
! GACAATTGTGTTTGGGATTT+GGG - chr7_3:63075444-63075463 None:intergenic 35.0%
! AGACAATTGTGTTTGGGATT+TGG - chr7_3:63075445-63075464 None:intergenic 35.0%
AAACGCGATTGATCGAATTA+GGG + chr7_3:63075471-63075490 Msa1115590:five_prime_UTR 35.0%
! TTTAGAACAAAAATGGGAGG+TGG + chr7_3:63075517-63075536 Msa1115590:exon 35.0%
TTAGCTGAGAGTTTGAAGAT+GGG - chr7_3:63075688-63075707 None:intergenic 35.0%
TTTAGCTGAGAGTTTGAAGA+TGG - chr7_3:63075689-63075708 None:intergenic 35.0%
! TTTTCGTTGCGAAGAAATGA+GGG + chr7_3:63075861-63075880 Msa1115590:intron 35.0%
TGTTAATGTTAACGACGATC+TGG + chr7_3:63075973-63075992 Msa1115590:intron 35.0%
GTTAATGTTAACGACGATCT+GGG + chr7_3:63075974-63075993 Msa1115590:intron 35.0%
GATGATTGCTAAACCATGTA+AGG + chr7_3:63076230-63076249 Msa1115590:intron 35.0%
TTGCTAAACCATGTAAGGTT+TGG + chr7_3:63076235-63076254 Msa1115590:intron 35.0%
! TAAGGTTTGGCATTTGAGTT+AGG + chr7_3:63076248-63076267 Msa1115590:intron 35.0%
!! GAAATAGACTTTAGGGTACT+CGG + chr7_3:63076295-63076314 Msa1115590:intron 35.0%
GAATCAACGTACTTAAACCA+TGG - chr7_3:63076501-63076520 None:intergenic 35.0%
CTCCCTATCATACTGTATAA+TGG - chr7_3:63076523-63076542 None:intergenic 35.0%
TATACAGTATGATAGGGAGA+TGG + chr7_3:63076524-63076543 Msa1115590:intron 35.0%
TTAGTCAAAGGACCCAATTT+GGG + chr7_3:63076556-63076575 Msa1115590:intron 35.0%
AGAGGACTCATAGAAACAAA+TGG + chr7_3:63076840-63076859 Msa1115590:intron 35.0%
ATGGAGAATAGTCCAATTGT+TGG + chr7_3:63076859-63076878 Msa1115590:intron 35.0%
CTTTAGGCATGATTCATGAT+TGG + chr7_3:63076942-63076961 Msa1115590:intron 35.0%
TGATTCATGATTGGGCATTA+TGG + chr7_3:63076951-63076970 Msa1115590:intron 35.0%
! CTTTTCTCACATTGTCTCTA+CGG + chr7_3:63077176-63077195 Msa1115590:intron 35.0%
! TTTTCTCACATTGTCTCTAC+GGG + chr7_3:63077177-63077196 Msa1115590:intron 35.0%
! GACTGAAAGAGAACCTTTTT+AGG + chr7_3:63077323-63077342 Msa1115590:intron 35.0%
TGTATTAACCCCTGTGAATT+TGG + chr7_3:63077369-63077388 Msa1115590:intron 35.0%
!!! TGATGTGCTTTTTTAGTCGT+TGG + chr7_3:63077445-63077464 Msa1115590:intron 35.0%
! CCCAAAGAAAGAGATTAGTT+AGG + chr7_3:63077694-63077713 Msa1115590:intron 35.0%
GCCTAACTAATCTCTTTCTT+TGG - chr7_3:63077698-63077717 None:intergenic 35.0%
! TTTTGTGATTCTCAGAAGTG+GGG - chr7_3:63077964-63077983 None:intergenic 35.0%
! CTTTTTGTGATTCTCAGAAG+TGG - chr7_3:63077966-63077985 None:intergenic 35.0%
AGCATCCTCACAAATATGTA+AGG - chr7_3:63078050-63078069 None:intergenic 35.0%
GAAAAAGATGGGATAGAGTA+AGG - chr7_3:63078122-63078141 None:intergenic 35.0%
!! TTGCCTTATTTGCAATGCAA+AGG + chr7_3:63078264-63078283 Msa1115590:intron 35.0%
CATCCTTTGCATTGCAAATA+AGG - chr7_3:63078270-63078289 None:intergenic 35.0%
ATACATTAAATCGACACTCC+AGG + chr7_3:63078435-63078454 Msa1115590:intron 35.0%
TAATATTATGACAGGCAACC+TGG - chr7_3:63078456-63078475 None:intergenic 35.0%
GTGTAAAAAGAGAATGTCAG+AGG + chr7_3:63078485-63078504 Msa1115590:intron 35.0%
AACATAAAGTTGGGGAAGAT+GGG + chr7_3:63078624-63078643 Msa1115590:intron 35.0%
! GCTGAGTGAACTATTTGTTT+TGG + chr7_3:63078748-63078767 Msa1115590:intron 35.0%
TGAATCTACCAAGTTATGTC+AGG + chr7_3:63078852-63078871 Msa1115590:intron 35.0%
GGTATAAACCTGACATAACT+TGG - chr7_3:63078863-63078882 None:intergenic 35.0%
AAAGTTCTTGCACCACATTT+GGG - chr7_3:63079206-63079225 None:intergenic 35.0%
TTCGTAGTCTTTGTAGTCTT+TGG - chr7_3:63079233-63079252 None:intergenic 35.0%
TATCAATTGCATCAGTTGTG+TGG + chr7_3:63079264-63079283 Msa1115590:three_prime_UTR 35.0%
ATCAATTGCATCAGTTGTGT+GGG + chr7_3:63079265-63079284 Msa1115590:three_prime_UTR 35.0%
CTTCAATGCTGTTCATAACA+AGG - chr7_3:63079317-63079336 None:intergenic 35.0%
! TTTGGAGAGCTTGTTCAAAT+TGG + chr7_3:63079464-63079483 Msa1115590:three_prime_UTR 35.0%
CTTGTTCAAATTGGCATTAC+TGG + chr7_3:63079473-63079492 Msa1115590:three_prime_UTR 35.0%
! TCCTCATTTTCTTCTGTACT+CGG + chr7_3:63079554-63079573 Msa1115590:three_prime_UTR 35.0%
CAAACGCGATTGATCGAATT+AGG + chr7_3:63075470-63075489 Msa1115590:five_prime_UTR 40.0%
! GAGATTTCAGGTACAAGGTT+TGG + chr7_3:63075575-63075594 Msa1115590:CDS 40.0%
! TACAAGGTTTGGAGTATGAC+TGG + chr7_3:63075586-63075605 Msa1115590:CDS 40.0%
TGTTGCGTTTCCAGTGTTTA+GGG - chr7_3:63075627-63075646 None:intergenic 40.0%
TAGCTGAGAGTTTGAAGATG+GGG - chr7_3:63075687-63075706 None:intergenic 40.0%
CAAACTCTCAGCTAAACTTG+AGG + chr7_3:63075693-63075712 Msa1115590:CDS 40.0%
GGAAATCTGGCAAAGAAAAC+AGG - chr7_3:63075748-63075767 None:intergenic 40.0%
! GTTTTCGTTGCGAAGAAATG+AGG + chr7_3:63075860-63075879 Msa1115590:intron 40.0%
AGAAATGAGGGACTGGATAA+CGG + chr7_3:63075873-63075892 Msa1115590:intron 40.0%
! TGAGATTTTCACCGATGCAT+GGG + chr7_3:63076149-63076168 Msa1115590:intron 40.0%
CATACCATAATGTAAGTCCG+TGG + chr7_3:63076176-63076195 Msa1115590:intron 40.0%
AACACCACGGACTTACATTA+TGG - chr7_3:63076183-63076202 None:intergenic 40.0%
CTCAAATGCCAAACCTTACA+TGG - chr7_3:63076246-63076265 None:intergenic 40.0%
! TCTAGCTTATCTCGTGGAAA+TGG + chr7_3:63076358-63076377 Msa1115590:intron 40.0%
TGGAGAGAGATGTTAGTCAA+AGG + chr7_3:63076544-63076563 Msa1115590:intron 40.0%
GTTAGTCAAAGGACCCAATT+TGG + chr7_3:63076555-63076574 Msa1115590:intron 40.0%
CCATTTCATCCACCCAAATT+GGG - chr7_3:63076571-63076590 None:intergenic 40.0%
TCCATTTCATCCACCCAAAT+TGG - chr7_3:63076572-63076591 None:intergenic 40.0%
GCTCAATGTTGCAAATGAGT+CGG + chr7_3:63076701-63076720 Msa1115590:intron 40.0%
CTGTGCACACAAAACAAGAT+AGG + chr7_3:63076726-63076745 Msa1115590:intron 40.0%
GGTTTCTCCCATTGTACAAA+AGG + chr7_3:63076781-63076800 Msa1115590:intron 40.0%
! GCTCACACCTTTTGTACAAT+GGG - chr7_3:63076791-63076810 None:intergenic 40.0%
GAGAATAGTCCAATTGTTGG+AGG + chr7_3:63076862-63076881 Msa1115590:intron 40.0%
ACACATCCGCTACTTATCAT+AGG - chr7_3:63077092-63077111 None:intergenic 40.0%
!!! TGCTTTTTTAGTCGTTGGTG+AGG + chr7_3:63077450-63077469 Msa1115590:intron 40.0%
!!! GCTTTTTTAGTCGTTGGTGA+GGG + chr7_3:63077451-63077470 Msa1115590:intron 40.0%
TGGGAAAAAGAAAAGAGGGT+GGG - chr7_3:63077678-63077697 None:intergenic 40.0%
TTGGGAAAAAGAAAAGAGGG+TGG - chr7_3:63077679-63077698 None:intergenic 40.0%
GAATTGCTCTACACTCCAAT+TGG - chr7_3:63077766-63077785 None:intergenic 40.0%
TGGAGTGTAGAGCAATTCTA+TGG + chr7_3:63077768-63077787 Msa1115590:intron 40.0%
GTGTGATATAGCTGCATAGT+CGG - chr7_3:63077866-63077885 None:intergenic 40.0%
AATATGTAAGGCAGCAGCAT+CGG - chr7_3:63078038-63078057 None:intergenic 40.0%
TGCTGCCTTACATATTTGTG+AGG + chr7_3:63078042-63078061 Msa1115590:intron 40.0%
ATGCTCGTCCATGAAAAAAC+AGG + chr7_3:63078065-63078084 Msa1115590:intron 40.0%
GTTGCAGGTGAGAAAAAGAT+GGG - chr7_3:63078133-63078152 None:intergenic 40.0%
TGTTGCAGGTGAGAAAAAGA+TGG - chr7_3:63078134-63078153 None:intergenic 40.0%
TCTAGCACATTTCTTCTGGT+CGG - chr7_3:63078167-63078186 None:intergenic 40.0%
GTCAACCTCACCAAAATTGT+GGG - chr7_3:63078310-63078329 None:intergenic 40.0%
!! CACAATTTTGGTGAGGTTGA+CGG + chr7_3:63078309-63078328 Msa1115590:intron 40.0%
GTCTTCAAATCACTGTCTAC+AGG - chr7_3:63078357-63078376 None:intergenic 40.0%
AGACAGTGATTTGAAGACCT+TGG + chr7_3:63078359-63078378 Msa1115590:intron 40.0%
GACAGTGATTTGAAGACCTT+GGG + chr7_3:63078360-63078379 Msa1115590:intron 40.0%
ACAGTGATTTGAAGACCTTG+GGG + chr7_3:63078361-63078380 Msa1115590:intron 40.0%
! TTGAGTGTTGTATAGGAAGC+AGG + chr7_3:63078527-63078546 Msa1115590:intron 40.0%
! TATGTTGCAGGGAACTCTTT+TGG - chr7_3:63078610-63078629 None:intergenic 40.0%
AGTTCCCTGCAACATAAAGT+TGG + chr7_3:63078614-63078633 Msa1115590:intron 40.0%
GTTCCCTGCAACATAAAGTT+GGG + chr7_3:63078615-63078634 Msa1115590:intron 40.0%
TTCCCTGCAACATAAAGTTG+GGG + chr7_3:63078616-63078635 Msa1115590:intron 40.0%
TTCCCCAACTTTATGTTGCA+GGG - chr7_3:63078621-63078640 None:intergenic 40.0%
CAACATAAAGTTGGGGAAGA+TGG + chr7_3:63078623-63078642 Msa1115590:intron 40.0%
ACATAAAGTTGGGGAAGATG+GGG + chr7_3:63078625-63078644 Msa1115590:intron 40.0%
GGACGACTTGAATTTCTTTC+TGG + chr7_3:63078965-63078984 Msa1115590:intron 40.0%
CAAAGTTCTTGCACCACATT+TGG - chr7_3:63079207-63079226 None:intergenic 40.0%
CAAATGTGGTGCAAGAACTT+TGG + chr7_3:63079205-63079224 Msa1115590:CDS 40.0%
GTTATGTACGAATTGGGTCT+AGG + chr7_3:63079353-63079372 Msa1115590:three_prime_UTR 40.0%
TTAAATAAGCTGCTCATGCC+TGG + chr7_3:63079437-63079456 Msa1115590:three_prime_UTR 40.0%
TGAGGAATGAGAAGGAGGAA+GGG - chr7_3:63075415-63075434 None:intergenic 45.0%
GAAAGTGAGGAATGAGAAGG+AGG - chr7_3:63075420-63075439 None:intergenic 45.0%
GGAGAAAGTGAGGAATGAGA+AGG - chr7_3:63075423-63075442 None:intergenic 45.0%
TTGGGATTTGGGAGAAAGTG+AGG - chr7_3:63075433-63075452 None:intergenic 45.0%
AGAACAAAAATGGGAGGTGG+TGG + chr7_3:63075520-63075539 Msa1115590:exon 45.0%
GTACCTGAAATCTCCTCCAT+TGG - chr7_3:63075569-63075588 None:intergenic 45.0%
! TGGAGGAGATTTCAGGTACA+AGG + chr7_3:63075570-63075589 Msa1115590:CDS 45.0%
! AAGGTTTGGAGTATGACTGG+TGG + chr7_3:63075589-63075608 Msa1115590:CDS 45.0%
GTGTTGCGTTTCCAGTGTTT+AGG - chr7_3:63075628-63075647 None:intergenic 45.0%
AACACTGCCATCGCTATGTT+CGG + chr7_3:63075643-63075662 Msa1115590:CDS 45.0%
TGAAGATGGGGATACAAACG+AGG - chr7_3:63075675-63075694 None:intergenic 45.0%
! GTGAGATTTTCACCGATGCA+TGG + chr7_3:63076148-63076167 Msa1115590:intron 45.0%
TGGTATGCAATCCCATGCAT+CGG - chr7_3:63076163-63076182 None:intergenic 45.0%
TCGGCATGGATGTCAAAGAT+GGG + chr7_3:63076314-63076333 Msa1115590:intron 45.0%
!! GATGTCAAAGATGGGTTGAG+TGG + chr7_3:63076322-63076341 Msa1115590:intron 45.0%
TACTTAAACCATGGGACTGG+AGG - chr7_3:63076492-63076511 None:intergenic 45.0%
ACGTACTTAAACCATGGGAC+TGG - chr7_3:63076495-63076514 None:intergenic 45.0%
CCCAATTTGGGTGGATGAAA+TGG + chr7_3:63076568-63076587 Msa1115590:intron 45.0%
TTGGGTGGATGAAATGGAGA+AGG + chr7_3:63076574-63076593 Msa1115590:intron 45.0%
! GGCTCACACCTTTTGTACAA+TGG - chr7_3:63076792-63076811 None:intergenic 45.0%
ATAGTCCAATTGTTGGAGGC+AGG + chr7_3:63076866-63076885 Msa1115590:intron 45.0%
TAGTCCAATTGTTGGAGGCA+GGG + chr7_3:63076867-63076886 Msa1115590:intron 45.0%
ACTACGTGAGAACAGCTACA+TGG - chr7_3:63076988-63077007 None:intergenic 45.0%
GGAAAAAGAAAAGAGGGTGG+GGG - chr7_3:63077676-63077695 None:intergenic 45.0%
GGGAAAAAGAAAAGAGGGTG+GGG - chr7_3:63077677-63077696 None:intergenic 45.0%
!! TTTGGCTTGTTGAGATGTGG+TGG - chr7_3:63078015-63078034 None:intergenic 45.0%
TAGCACATTTCTTCTGGTCG+GGG - chr7_3:63078165-63078184 None:intergenic 45.0%
CTAGCACATTTCTTCTGGTC+GGG - chr7_3:63078166-63078185 None:intergenic 45.0%
CAAAATTGTGGGAAGCGAAG+AGG - chr7_3:63078299-63078318 None:intergenic 45.0%
! CTCTTCGCTTCCCACAATTT+TGG + chr7_3:63078297-63078316 Msa1115590:intron 45.0%
CGTCAACCTCACCAAAATTG+TGG - chr7_3:63078311-63078330 None:intergenic 45.0%
ATCACTGTCTACAGGCTTCA+CGG - chr7_3:63078349-63078368 None:intergenic 45.0%
CAGTGATTTGAAGACCTTGG+GGG + chr7_3:63078362-63078381 Msa1115590:intron 45.0%
CTTCCCCAACTTTATGTTGC+AGG - chr7_3:63078622-63078641 None:intergenic 45.0%
ACAGAATAGCAGCAGCAACT+AGG - chr7_3:63079011-63079030 None:intergenic 45.0%
TCTTGCACCACATTTGGGAA+GGG - chr7_3:63079201-63079220 None:intergenic 45.0%
TTCTTGCACCACATTTGGGA+AGG - chr7_3:63079202-63079221 None:intergenic 45.0%
ACAAGCTCTCCAAAGAATCC+AGG - chr7_3:63079458-63079477 None:intergenic 45.0%
GCCGAGTACAGAAGAAAATG+AGG - chr7_3:63079558-63079577 None:intergenic 45.0%
!!! TAAAAAAATTGATAATAATT+TGG - chr7_3:63075790-63075809 None:intergenic 5.0%
!!! AAATTATTATCAATTTTTTT+AGG + chr7_3:63075789-63075808 Msa1115590:intron 5.0%
!!! AATTATTATCAATTTTTTTA+GGG + chr7_3:63075790-63075809 Msa1115590:intron 5.0%
!!! ATTATTTCATATTTTTTAAA+AGG + chr7_3:63078711-63078730 Msa1115590:intron 5.0%
GTGAGGAATGAGAAGGAGGA+AGG - chr7_3:63075416-63075435 None:intergenic 50.0%
GAGCCAATGGAGGAGATTTC+AGG + chr7_3:63075563-63075582 Msa1115590:CDS 50.0%
GACGATACCGAACATAGCGA+TGG - chr7_3:63075653-63075672 None:intergenic 50.0%
GTTGCGAAGAAATGAGGGAC+TGG + chr7_3:63075866-63075885 Msa1115590:intron 50.0%
!! AGACTTTAGGGTACTCGGCA+TGG + chr7_3:63076300-63076319 Msa1115590:intron 50.0%
CTCGGCATGGATGTCAAAGA+TGG + chr7_3:63076313-63076332 Msa1115590:intron 50.0%
GTCAAAGGACCCAATTTGGG+TGG + chr7_3:63076559-63076578 Msa1115590:intron 50.0%
GGTGGATGAAATGGAGAAGG+TGG + chr7_3:63076577-63076596 Msa1115590:intron 50.0%
GTAGCTGTTCTCACGTAGTG+TGG + chr7_3:63076989-63077008 Msa1115590:intron 50.0%
TGTCTCTACGGGAGAGCAAA+TGG + chr7_3:63077188-63077207 Msa1115590:intron 50.0%
!! CGGTTTGGCTTGTTGAGATG+TGG - chr7_3:63078018-63078037 None:intergenic 50.0%
ATTTCTTCTGGTCGGGGTGT+GGG - chr7_3:63078159-63078178 None:intergenic 50.0%
!! CGCTTCCCACAATTTTGGTG+AGG + chr7_3:63078302-63078321 Msa1115590:intron 50.0%
TTTGGTGAGGTTGACGGTGA+AGG + chr7_3:63078315-63078334 Msa1115590:intron 50.0%
CACAATCCCTGCTCAGAACA+AGG - chr7_3:63078553-63078572 None:intergenic 50.0%
ATTGGACGAACAGGGTGATG+TGG - chr7_3:63079178-63079197 None:intergenic 50.0%
GTCCAATCCCTTCCCAAATG+TGG + chr7_3:63079191-63079210 Msa1115590:CDS 50.0%
CACCACATTTGGGAAGGGAT+TGG - chr7_3:63079196-63079215 None:intergenic 50.0%
CTGCTCATGCCTGGATTCTT+TGG + chr7_3:63079446-63079465 Msa1115590:three_prime_UTR 50.0%
GGTGGAGCAGATCACGGTAA+TGG + chr7_3:63075538-63075557 Msa1115590:CDS 55.0%
! GGAGCAGATCACGGTAATGG+CGG + chr7_3:63075541-63075560 Msa1115590:CDS 55.0%
! CAGTGTTTAGGGCGACAGTG+AGG - chr7_3:63075616-63075635 None:intergenic 55.0%
CTCACTGTCGCCCTAAACAC+TGG + chr7_3:63075614-63075633 Msa1115590:CDS 55.0%
ATACCATGCCTCCAGTCCCA+TGG + chr7_3:63076481-63076500 Msa1115590:intron 55.0%
AAACCATGGGACTGGAGGCA+TGG - chr7_3:63076487-63076506 None:intergenic 55.0%
CTCTCCCTGCCTCCAACAAT+TGG - chr7_3:63076874-63076893 None:intergenic 55.0%
!! GTAAGGCAGCAGCATCGGTT+TGG - chr7_3:63078033-63078052 None:intergenic 55.0%
TTTCTTCTGGTCGGGGTGTG+GGG - chr7_3:63078158-63078177 None:intergenic 55.0%
CATTTCTTCTGGTCGGGGTG+TGG - chr7_3:63078160-63078179 None:intergenic 55.0%
! CCACACAACGTTTTCCCCCA+AGG - chr7_3:63078379-63078398 None:intergenic 55.0%
CCTTGGGGGAAAACGTTGTG+TGG + chr7_3:63078376-63078395 Msa1115590:intron 55.0%
!! AAGCAGGCCTTGTTCTGAGC+AGG + chr7_3:63078543-63078562 Msa1115590:intron 55.0%
!! AGCAGGCCTTGTTCTGAGCA+GGG + chr7_3:63078544-63078563 Msa1115590:intron 55.0%
GGGAAGGGATTGGACGAACA+GGG - chr7_3:63079186-63079205 None:intergenic 55.0%
TGGGAAGGGATTGGACGAAC+AGG - chr7_3:63079187-63079206 None:intergenic 55.0%
!! GGAGGTGGTGGAGCAGATCA+CGG + chr7_3:63075532-63075551 Msa1115590:CDS 60.0%
! CACGGTAATGGCGGAGCCAA+TGG + chr7_3:63075550-63075569 Msa1115590:CDS 60.0%
! GGTAATGGCGGAGCCAATGG+AGG + chr7_3:63075553-63075572 Msa1115590:CDS 60.0%
GGTGAGGTTGACGGTGAAGG+CGG + chr7_3:63078318-63078337 Msa1115590:intron 60.0%
TCGGGGTGTGGGGTTGTTGC+AGG - chr7_3:63078148-63078167 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63075388 63079577 63075388 ID=Msa1115590;Name=Msa1115590
chr7_3 mRNA 63075388 63079577 63075388 ID=Msa1115590-mRNA-1;Parent=Msa1115590;Name=Msa1115590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=141|1|1|1|1|1|2|322|90
chr7_3 exon 63075388 63075714 63075388 ID=Msa1115590-mRNA-1:exon:14625;Parent=Msa1115590-mRNA-1
chr7_3 exon 63079169 63079577 63079169 ID=Msa1115590-mRNA-1:exon:14626;Parent=Msa1115590-mRNA-1
chr7_3 five_prime_UTR 63075388 63075528 63075388 ID=Msa1115590-mRNA-1:five_prime_utr;Parent=Msa1115590-mRNA-1
chr7_3 CDS 63075529 63075714 63075529 ID=Msa1115590-mRNA-1:cds;Parent=Msa1115590-mRNA-1
chr7_3 CDS 63079169 63079255 63079169 ID=Msa1115590-mRNA-1:cds;Parent=Msa1115590-mRNA-1
chr7_3 three_prime_UTR 63079256 63079577 63079256 ID=Msa1115590-mRNA-1:three_prime_utr;Parent=Msa1115590-mRNA-1
Gene Sequence

>Msa1115590

ATGGGAGGTGGTGGAGCAGATCACGGTAATGGCGGAGCCAATGGAGGAGATTTCAGGTACAAGGTTTGGAGTATGACTGGTGGACCTCACTGTCGCCCTAAACACTGGAAACGCAACACTGCCATCGCTATGTTCGGTATCGTCCTCGTTTGTATCCCCATCTTCAAACTCTCAGCTAAACTTGAGCAACGACCACATCACCCTGTTCGTCCAATCCCTTCCCAAATGTGGTGCAAGAACTTTGGAACCAAAGACTACAAAGACTACGAATAA
Protein sequence

>Msa1115590

MGGGGADHGNGGANGGDFRYKVWSMTGGPHCRPKHWKRNTAIAMFGIVLVCIPIFKLSAKLEQRPHHPVRPIPSQMWCKNFGTKDYKDYE*