Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538220 | XP_003605293.2 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 3.19e-80 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538220 | sp|Q43019|NLTP3_PRUDU | 55.118 | 127 | 51 | 4 | 1 | 125 | 1 | 123 | 6.08e-37 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538220 | G7JIB4 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 1.53e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0538220 | 0.820930 | 5.286168e-53 | -8.615850e-47 |
| Msa0004390 | Msa0538220 | 0.801067 | 1.072382e-48 | -8.615850e-47 |
| Msa0005050 | Msa0538220 | 0.868769 | 5.104780e-66 | -8.615850e-47 |
| Msa0016120 | Msa0538220 | 0.827822 | 1.264885e-54 | -8.615850e-47 |
| Msa0019600 | Msa0538220 | 0.825253 | 5.183436e-54 | -8.615850e-47 |
| Msa0032840 | Msa0538220 | -0.813808 | 2.122440e-51 | -8.615850e-47 |
| Msa0036430 | Msa0538220 | 0.816312 | 5.899635e-52 | -8.615850e-47 |
| Msa0043210 | Msa0538220 | 0.844993 | 5.358912e-59 | -8.615850e-47 |
| Msa0044020 | Msa0538220 | 0.806547 | 7.803168e-50 | -8.615850e-47 |
| Msa0050040 | Msa0538220 | 0.862680 | 4.269824e-64 | -8.615850e-47 |
| Msa0053110 | Msa0538220 | 0.876748 | 1.090836e-68 | -8.615850e-47 |
| Msa0072810 | Msa0538220 | 0.809951 | 1.467792e-50 | -8.615850e-47 |
| Msa0073670 | Msa0538220 | 0.843374 | 1.457473e-58 | -8.615850e-47 |
| Msa0076040 | Msa0538220 | 0.815403 | 9.410962e-52 | -8.615850e-47 |
| Msa0081010 | Msa0538220 | 0.846378 | 2.254787e-59 | -8.615850e-47 |
| Msa0083920 | Msa0538220 | 0.833084 | 6.533836e-56 | -8.615850e-47 |
| Msa0084000 | Msa0538220 | 0.803136 | 4.026690e-49 | -8.615850e-47 |
| Msa0084500 | Msa0538220 | 0.818025 | 2.431068e-52 | -8.615850e-47 |
| Msa0090590 | Msa0538220 | 0.800462 | 1.425353e-48 | -8.615850e-47 |
| Msa0098440 | Msa0538220 | 0.860244 | 2.364777e-63 | -8.615850e-47 |
| Msa0101300 | Msa0538220 | 0.803946 | 2.735202e-49 | -8.615850e-47 |
| Msa0102990 | Msa0538220 | 0.862200 | 5.996163e-64 | -8.615850e-47 |
| Msa0103000 | Msa0538220 | 0.821058 | 4.939941e-53 | -8.615850e-47 |
| Msa0106790 | Msa0538220 | 0.813536 | 2.435366e-51 | -8.615850e-47 |
| Msa0109880 | Msa0538220 | 0.814192 | 1.746354e-51 | -8.615850e-47 |
| Msa0110970 | Msa0538220 | 0.822596 | 2.177144e-53 | -8.615850e-47 |
| Msa0111750 | Msa0538220 | 0.813032 | 3.142859e-51 | -8.615850e-47 |
| Msa0114540 | Msa0538220 | -0.817288 | 3.564386e-52 | -8.615850e-47 |
| Msa0130010 | Msa0538220 | 0.818910 | 1.531452e-52 | -8.615850e-47 |
| Msa0130570 | Msa0538220 | 0.809892 | 1.511655e-50 | -8.615850e-47 |
| Msa0132010 | Msa0538220 | 0.841570 | 4.384783e-58 | -8.615850e-47 |
| Msa0134130 | Msa0538220 | 0.824307 | 8.665049e-54 | -8.615850e-47 |
| Msa0137150 | Msa0538220 | 0.847519 | 1.098967e-59 | -8.615850e-47 |
| Msa0141600 | Msa0538220 | 0.828809 | 7.313748e-55 | -8.615850e-47 |
| Msa0145520 | Msa0538220 | 0.806561 | 7.747889e-50 | -8.615850e-47 |
| Msa0147560 | Msa0538220 | 0.822696 | 2.062781e-53 | -8.615850e-47 |
| Msa0149140 | Msa0538220 | 0.814134 | 1.798183e-51 | -8.615850e-47 |
| Msa0153420 | Msa0538220 | 0.829290 | 5.592410e-55 | -8.615850e-47 |
| Msa0156250 | Msa0538220 | 0.802340 | 5.878198e-49 | -8.615850e-47 |
| Msa0176470 | Msa0538220 | 0.804188 | 2.435694e-49 | -8.615850e-47 |
| Msa0181610 | Msa0538220 | 0.804713 | 1.892579e-49 | -8.615850e-47 |
| Msa0185490 | Msa0538220 | 0.802508 | 5.426326e-49 | -8.615850e-47 |
| Msa0197930 | Msa0538220 | 0.812140 | 4.925122e-51 | -8.615850e-47 |
| Msa0203030 | Msa0538220 | 0.848473 | 5.995692e-60 | -8.615850e-47 |
| Msa0203160 | Msa0538220 | 0.820956 | 5.215352e-53 | -8.615850e-47 |
| Msa0212150 | Msa0538220 | 0.829814 | 4.170127e-55 | -8.615850e-47 |
| Msa0215640 | Msa0538220 | 0.809316 | 2.009791e-50 | -8.615850e-47 |
| Msa0219190 | Msa0538220 | 0.879175 | 1.544102e-69 | -8.615850e-47 |
| Msa0230550 | Msa0538220 | -0.812068 | 5.104640e-51 | -8.615850e-47 |
| Msa0232920 | Msa0538220 | 0.801077 | 1.067299e-48 | -8.615850e-47 |
| Msa0370600 | Msa0538220 | 0.842861 | 1.996919e-58 | -8.615850e-47 |
| Msa0375680 | Msa0538220 | 0.805822 | 1.108816e-49 | -8.615850e-47 |
| Msa0392420 | Msa0538220 | 0.806375 | 8.481231e-50 | -8.615850e-47 |
| Msa0392460 | Msa0538220 | 0.806630 | 7.494284e-50 | -8.615850e-47 |
| Msa0392490 | Msa0538220 | 0.805779 | 1.131864e-49 | -8.615850e-47 |
| Msa0406000 | Msa0538220 | 0.827128 | 1.856585e-54 | -8.615850e-47 |
| Msa0408630 | Msa0538220 | 0.814592 | 1.424719e-51 | -8.615850e-47 |
| Msa0408640 | Msa0538220 | 0.824986 | 5.994398e-54 | -8.615850e-47 |
| Msa0413930 | Msa0538220 | 0.811909 | 5.528979e-51 | -8.615850e-47 |
| Msa0418200 | Msa0538220 | 0.851939 | 6.399776e-61 | -8.615850e-47 |
| Msa0424350 | Msa0538220 | 0.800425 | 1.449791e-48 | -8.615850e-47 |
| Msa0436460 | Msa0538220 | 0.806089 | 9.743662e-50 | -8.615850e-47 |
| Msa0436500 | Msa0538220 | 0.858222 | 9.550930e-63 | -8.615850e-47 |
| Msa0444010 | Msa0538220 | 0.816113 | 6.538045e-52 | -8.615850e-47 |
| Msa0451400 | Msa0538220 | 0.852036 | 6.006524e-61 | -8.615850e-47 |
| Msa0453520 | Msa0538220 | 0.823975 | 1.036688e-53 | -8.615850e-47 |
| Msa0464540 | Msa0538220 | 0.856861 | 2.416263e-62 | -8.615850e-47 |
| Msa0252770 | Msa0538220 | 0.804140 | 2.491624e-49 | -8.615850e-47 |
| Msa0289920 | Msa0538220 | 0.813410 | 2.596487e-51 | -8.615850e-47 |
| Msa0298240 | Msa0538220 | 0.871359 | 7.259004e-67 | -8.615850e-47 |
| Msa0306120 | Msa0538220 | 0.815789 | 7.720306e-52 | -8.615850e-47 |
| Msa0322830 | Msa0538220 | 0.821399 | 4.123026e-53 | -8.615850e-47 |
| Msa0322840 | Msa0538220 | 0.806907 | 6.549679e-50 | -8.615850e-47 |
| Msa0329620 | Msa0538220 | 0.808859 | 2.518166e-50 | -8.615850e-47 |
| Msa0336090 | Msa0538220 | 0.825506 | 4.517495e-54 | -8.615850e-47 |
| Msa0337850 | Msa0538220 | 0.852511 | 4.399514e-61 | -8.615850e-47 |
| Msa0344570 | Msa0538220 | 0.813047 | 3.118621e-51 | -8.615850e-47 |
| Msa0351770 | Msa0538220 | 0.810033 | 1.409428e-50 | -8.615850e-47 |
| Msa0359250 | Msa0538220 | 0.841375 | 4.937382e-58 | -8.615850e-47 |
| Msa0361260 | Msa0538220 | 0.817384 | 3.391993e-52 | -8.615850e-47 |
| Msa0362780 | Msa0538220 | 0.802899 | 4.507476e-49 | -8.615850e-47 |
| Msa0487570 | Msa0538220 | 0.810531 | 1.100359e-50 | -8.615850e-47 |
| Msa0487630 | Msa0538220 | 0.809722 | 1.644129e-50 | -8.615850e-47 |
| Msa0492190 | Msa0538220 | 0.828279 | 9.818139e-55 | -8.615850e-47 |
| Msa0534930 | Msa0538220 | 0.813403 | 2.605239e-51 | -8.615850e-47 |
| Msa0535040 | Msa0538220 | 0.835294 | 1.824106e-56 | -8.615850e-47 |
| Msa0537920 | Msa0538220 | 0.908282 | 2.026149e-81 | -8.615850e-47 |
| Msa0538060 | Msa0538220 | 0.809665 | 1.690925e-50 | -8.615850e-47 |
| Msa0538220 | Msa0543850 | 0.812195 | 4.791257e-51 | -8.615850e-47 |
| Msa0538220 | Msa0571920 | 0.806347 | 8.597000e-50 | -8.615850e-47 |
| Msa0538220 | Msa0585730 | 0.813004 | 3.187394e-51 | -8.615850e-47 |
| Msa0538220 | Msa0591790 | 0.823226 | 1.552651e-53 | -8.615850e-47 |
| Msa0538220 | Msa0594090 | 0.864386 | 1.262056e-64 | -8.615850e-47 |
| Msa0538220 | Msa0618170 | 0.807123 | 5.894336e-50 | -8.615850e-47 |
| Msa0538220 | Msa0620990 | 0.801665 | 8.090286e-49 | -8.615850e-47 |
| Msa0538220 | Msa0625890 | 0.821998 | 2.996713e-53 | -8.615850e-47 |
| Msa0538220 | Msa0641250 | 0.892227 | 1.928263e-74 | -8.615850e-47 |
| Msa0538220 | Msa0663590 | 0.801172 | 1.020774e-48 | -8.615850e-47 |
| Msa0538220 | Msa0663680 | 0.831791 | 1.365991e-55 | -8.615850e-47 |
| Msa0538220 | Msa0666210 | 0.801231 | 9.928796e-49 | -8.615850e-47 |
| Msa0538220 | Msa0669840 | 0.870445 | 1.450990e-66 | -8.615850e-47 |
| Msa0538220 | Msa0672110 | 0.806695 | 7.259509e-50 | -8.615850e-47 |
| Msa0538220 | Msa0678890 | 0.812889 | 3.377557e-51 | -8.615850e-47 |
| Msa0538220 | Msa0680150 | 0.844315 | 8.158480e-59 | -8.615850e-47 |
| Msa0538220 | Msa0685330 | 0.804952 | 1.687447e-49 | -8.615850e-47 |
| Msa0538220 | Msa0688500 | 0.910254 | 2.300737e-82 | -8.615850e-47 |
| Msa0538220 | Msa0707220 | 0.886097 | 4.600164e-72 | -8.615850e-47 |
| Msa0538220 | Msa0716800 | 0.858174 | 9.874768e-63 | -8.615850e-47 |
| Msa0538220 | Msa0720040 | 0.827923 | 1.196289e-54 | -8.615850e-47 |
| Msa0538220 | Msa0739580 | 0.808788 | 2.607140e-50 | -8.615850e-47 |
| Msa0538220 | Msa0741900 | 0.813789 | 2.142163e-51 | -8.615850e-47 |
| Msa0538220 | Msa0747780 | 0.881727 | 1.887674e-70 | -8.615850e-47 |
| Msa0538220 | Msa0752840 | 0.805106 | 1.566603e-49 | -8.615850e-47 |
| Msa0538220 | Msa0754030 | 0.814441 | 1.538527e-51 | -8.615850e-47 |
| Msa0538220 | Msa0757870 | 0.887355 | 1.534459e-72 | -8.615850e-47 |
| Msa0538220 | Msa0761580 | 0.847305 | 1.258252e-59 | -8.615850e-47 |
| Msa0538220 | Msa0764820 | 0.828483 | 8.769283e-55 | -8.615850e-47 |
| Msa0538220 | Msa0782360 | 0.804917 | 1.715682e-49 | -8.615850e-47 |
| Msa0538220 | Msa0807110 | 0.827679 | 1.369481e-54 | -8.615850e-47 |
| Msa0538220 | Msa0816450 | 0.812891 | 3.374628e-51 | -8.615850e-47 |
| Msa0538220 | Msa0822990 | 0.827503 | 1.509374e-54 | -8.615850e-47 |
| Msa0538220 | Msa0833040 | 0.827014 | 1.976466e-54 | -8.615850e-47 |
| Msa0538220 | Msa0840500 | 0.835196 | 1.931425e-56 | -8.615850e-47 |
| Msa0538220 | Msa0856520 | 0.800416 | 1.456187e-48 | -8.615850e-47 |
| Msa0538220 | Msa0860280 | 0.809039 | 2.303580e-50 | -8.615850e-47 |
| Msa0538220 | Msa0862100 | 0.817275 | 3.588715e-52 | -8.615850e-47 |
| Msa0538220 | Msa0867350 | 0.870423 | 1.475752e-66 | -8.615850e-47 |
| Msa0538220 | Msa0871890 | 0.803065 | 4.165260e-49 | -8.615850e-47 |
| Msa0538220 | Msa0872310 | 0.851442 | 8.852978e-61 | -8.615850e-47 |
| Msa0538220 | Msa0873190 | 0.822804 | 1.946752e-53 | -8.615850e-47 |
| Msa0538220 | Msa0885060 | 0.834621 | 2.695647e-56 | -8.615850e-47 |
| Msa0538220 | Msa0895790 | 0.801027 | 1.093035e-48 | -8.615850e-47 |
| Msa0538220 | Msa0898730 | 0.863556 | 2.288531e-64 | -8.615850e-47 |
| Msa0538220 | Msa0905260 | 0.802411 | 5.681797e-49 | -8.615850e-47 |
| Msa0538220 | Msa0905550 | 0.856382 | 3.340323e-62 | -8.615850e-47 |
| Msa0538220 | Msa0906370 | 0.811004 | 8.695343e-51 | -8.615850e-47 |
| Msa0538220 | Msa0911990 | 0.813296 | 2.749737e-51 | -8.615850e-47 |
| Msa0538220 | Msa0929870 | 0.805845 | 1.096699e-49 | -8.615850e-47 |
| Msa0538220 | Msa0930780 | 0.815015 | 1.147964e-51 | -8.615850e-47 |
| Msa0538220 | Msa0937550 | 0.854894 | 9.083491e-62 | -8.615850e-47 |
| Msa0538220 | Msa0938430 | 0.832962 | 7.004953e-56 | -8.615850e-47 |
| Msa0538220 | Msa0944760 | 0.811366 | 7.258253e-51 | -8.615850e-47 |
| Msa0538220 | Msa0961560 | 0.807594 | 4.684692e-50 | -8.615850e-47 |
| Msa0538220 | Msa0974750 | 0.825359 | 4.892409e-54 | -8.615850e-47 |
| Msa0538220 | Msa0975580 | 0.810924 | 9.051195e-51 | -8.615850e-47 |
| Msa0538220 | Msa0979510 | 0.810632 | 1.046519e-50 | -8.615850e-47 |
| Msa0538220 | Msa0999300 | 0.826998 | 1.994278e-54 | -8.615850e-47 |
| Msa0538220 | Msa0999360 | 0.800207 | 1.606258e-48 | -8.615850e-47 |
| Msa0538220 | Msa1007350 | 0.829906 | 3.960291e-55 | -8.615850e-47 |
| Msa0538220 | Msa1013770 | 0.814174 | 1.762008e-51 | -8.615850e-47 |
| Msa0538220 | Msa1032450 | 0.857759 | 1.311319e-62 | -8.615850e-47 |
| Msa0538220 | Msa1033560 | 0.822732 | 2.023961e-53 | -8.615850e-47 |
| Msa0538220 | Msa1033570 | 0.800008 | 1.762994e-48 | -8.615850e-47 |
| Msa0538220 | Msa1037890 | 0.804795 | 1.819823e-49 | -8.615850e-47 |
| Msa0538220 | Msa1037900 | 0.854310 | 1.340023e-61 | -8.615850e-47 |
| Msa0538220 | Msa1037910 | 0.815787 | 7.728965e-52 | -8.615850e-47 |
| Msa0538220 | Msa1037920 | 0.804842 | 1.779168e-49 | -8.615850e-47 |
| Msa0538220 | Msa1041530 | 0.894615 | 2.087059e-75 | -8.615850e-47 |
| Msa0538220 | Msa1042670 | 0.820266 | 7.510400e-53 | -8.615850e-47 |
| Msa0538220 | Msa1045780 | 0.826465 | 2.673575e-54 | -8.615850e-47 |
| Msa0538220 | Msa1061500 | 0.803633 | 3.176822e-49 | -8.615850e-47 |
| Msa0538220 | Msa1066490 | 0.819648 | 1.040103e-52 | -8.615850e-47 |
| Msa0538220 | Msa1070420 | 0.820361 | 7.142041e-53 | -8.615850e-47 |
| Msa0538220 | Msa1081570 | 0.881781 | 1.804004e-70 | -8.615850e-47 |
| Msa0538220 | Msa1088130 | 0.809847 | 1.545789e-50 | -8.615850e-47 |
| Msa0538220 | Msa1096210 | 0.818196 | 2.223612e-52 | -8.615850e-47 |
| Msa0538220 | Msa1123880 | 0.874985 | 4.400593e-68 | -8.615850e-47 |
| Msa0538220 | Msa1127140 | 0.888629 | 4.983266e-73 | -8.615850e-47 |
| Msa0538220 | Msa1129950 | 0.803430 | 3.498685e-49 | -8.615850e-47 |
| Msa0538220 | Msa1129960 | 0.868126 | 8.232896e-66 | -8.615850e-47 |
| Msa0538220 | Msa1129970 | 0.844794 | 6.061877e-59 | -8.615850e-47 |
| Msa0538220 | Msa1130010 | 0.854848 | 9.361213e-62 | -8.615850e-47 |
| Msa0538220 | Msa1130760 | 0.815557 | 8.696245e-52 | -8.615850e-47 |
| Msa0538220 | Msa1134110 | 0.824061 | 9.898216e-54 | -8.615850e-47 |
| Msa0538220 | Msa1136230 | 0.821728 | 3.460210e-53 | -8.615850e-47 |
| Msa0538220 | Msa1145020 | 0.832691 | 8.179637e-56 | -8.615850e-47 |
| Msa0538220 | Msa1166400 | 0.874397 | 6.974905e-68 | -8.615850e-47 |
| Msa0538220 | Msa1169990 | 0.856009 | 4.298841e-62 | -8.615850e-47 |
| Msa0538220 | Msa1176160 | 0.832076 | 1.161557e-55 | -8.615850e-47 |
| Msa0538220 | Msa1179280 | 0.819313 | 1.240218e-52 | -8.615850e-47 |
| Msa0538220 | Msa1186830 | 0.820816 | 5.616385e-53 | -8.615850e-47 |
| Msa0538220 | Msa1200440 | 0.800536 | 1.376694e-48 | -8.615850e-47 |
| Msa0538220 | Msa1201110 | 0.872244 | 3.690773e-67 | -8.615850e-47 |
| Msa0538220 | Msa1201160 | 0.860980 | 1.414256e-63 | -8.615850e-47 |
| Msa0538220 | Msa1228610 | 0.812168 | 4.855470e-51 | -8.615850e-47 |
| Msa0538220 | Msa1233560 | 0.836376 | 9.706509e-57 | -8.615850e-47 |
| Msa0538220 | Msa1251160 | 0.806974 | 6.338511e-50 | -8.615850e-47 |
| Msa0538220 | Msa1272330 | 0.826733 | 2.306976e-54 | -8.615850e-47 |
| Msa0538220 | Msa1285900 | 0.813809 | 2.120665e-51 | -8.615850e-47 |
| Msa0538220 | Msa1294290 | 0.829637 | 4.604767e-55 | -8.615850e-47 |
| Msa0538220 | Msa1305510 | 0.862158 | 6.175637e-64 | -8.615850e-47 |
| Msa0538220 | Msa1307190 | 0.814173 | 1.762955e-51 | -8.615850e-47 |
| Msa0538220 | Msa1313970 | 0.804461 | 2.136879e-49 | -8.615850e-47 |
| Msa0538220 | Msa1327490 | 0.803846 | 2.868762e-49 | -8.615850e-47 |
| Msa0538220 | Msa1336780 | 0.813078 | 3.070112e-51 | -8.615850e-47 |
| Msa0538220 | Msa1355400 | 0.852440 | 4.611736e-61 | -8.615850e-47 |
| Msa0538220 | Msa1365200 | 0.806814 | 6.851063e-50 | -8.615850e-47 |
| Msa0538220 | Msa1373330 | 0.806845 | 6.749349e-50 | -8.615850e-47 |
| Msa0538220 | Msa1406040 | 0.806115 | 9.619072e-50 | -8.615850e-47 |
| Msa0538220 | Msa1406780 | 0.828380 | 9.285472e-55 | -8.615850e-47 |
| Msa0538220 | Msa1408870 | 0.827973 | 1.163798e-54 | -8.615850e-47 |
| Msa0538220 | Msa1414930 | 0.853167 | 2.857566e-61 | -8.615850e-47 |
| Msa0538220 | Msa1419490 | 0.809501 | 1.833711e-50 | -8.615850e-47 |
| Msa0538220 | Msa1420060 | 0.882683 | 8.483226e-71 | -8.615850e-47 |
| Msa0538220 | Msa1421550 | 0.859352 | 4.389727e-63 | -8.615850e-47 |
| Msa0538220 | Msa1423460 | 0.805880 | 1.078037e-49 | -8.615850e-47 |
| Msa0538220 | Msa1431850 | 0.821491 | 3.924379e-53 | -8.615850e-47 |
| Msa0538220 | Msa1437710 | 0.825079 | 5.700722e-54 | -8.615850e-47 |
| Msa0538220 | Msa1461060 | 0.826766 | 2.265544e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538220 | MtrunA17_Chr4g0012891 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 2.94e-84 | 241 |
| Msa0538220 | MtrunA17_Chr7g0244841 | 46.281 | 121 | 59 | 2 | 4 | 124 | 3 | 117 | 1.68e-32 | 110 |
| Msa0538220 | MtrunA17_Chr7g0244831 | 45.082 | 122 | 62 | 2 | 4 | 125 | 3 | 119 | 1.62e-30 | 105 |
| Msa0538220 | MtrunA17_Chr4g0012951 | 47.009 | 117 | 56 | 3 | 9 | 125 | 5 | 115 | 2.61e-30 | 105 |
| Msa0538220 | MtrunA17_Chr4g0012901 | 39.200 | 125 | 72 | 1 | 1 | 125 | 1 | 121 | 8.46e-27 | 96.3 |
| Msa0538220 | MtrunA17_Chr7g0244691 | 42.623 | 122 | 65 | 2 | 4 | 125 | 3 | 119 | 1.02e-26 | 96.3 |
| Msa0538220 | MtrunA17_Chr4g0013001 | 42.735 | 117 | 61 | 3 | 9 | 125 | 5 | 115 | 2.14e-26 | 95.1 |
| Msa0538220 | MtrunA17_Chr4g0012961 | 42.735 | 117 | 61 | 3 | 9 | 125 | 5 | 115 | 3.00e-26 | 94.7 |
| Msa0538220 | MtrunA17_Chr4g0012991 | 42.735 | 117 | 61 | 3 | 9 | 125 | 60 | 170 | 7.74e-25 | 92.8 |
| Msa0538220 | MtrunA17_Chr7g0244681 | 42.857 | 119 | 63 | 2 | 4 | 122 | 3 | 116 | 1.91e-23 | 87.8 |
| Msa0538220 | MtrunA17_Chr1g0165761 | 45.528 | 123 | 60 | 3 | 4 | 125 | 3 | 119 | 2.43e-23 | 87.4 |
| Msa0538220 | MtrunA17_Chr4g0013251 | 40.984 | 122 | 65 | 3 | 4 | 125 | 2 | 116 | 2.98e-23 | 87.0 |
| Msa0538220 | MtrunA17_Chr2g0309241 | 38.333 | 120 | 67 | 3 | 6 | 124 | 1 | 114 | 3.29e-23 | 87.0 |
| Msa0538220 | MtrunA17_Chr7g0244741 | 44.355 | 124 | 62 | 3 | 4 | 125 | 3 | 121 | 5.78e-23 | 86.7 |
| Msa0538220 | MtrunA17_Chr4g0013211 | 38.462 | 117 | 66 | 3 | 9 | 125 | 5 | 115 | 2.30e-22 | 84.7 |
| Msa0538220 | MtrunA17_Chr7g0244671 | 39.669 | 121 | 67 | 3 | 4 | 123 | 3 | 118 | 2.92e-22 | 85.5 |
| Msa0538220 | MtrunA17_Chr7g0244641 | 37.398 | 123 | 71 | 3 | 4 | 125 | 3 | 120 | 3.84e-22 | 84.3 |
| Msa0538220 | MtrunA17_Chr4g0013261 | 40.984 | 122 | 65 | 3 | 4 | 125 | 2 | 116 | 6.18e-22 | 84.0 |
| Msa0538220 | MtrunA17_Chr7g0244821 | 42.400 | 125 | 61 | 4 | 4 | 125 | 3 | 119 | 1.28e-21 | 83.2 |
| Msa0538220 | MtrunA17_Chr7g0244811 | 38.583 | 127 | 70 | 4 | 1 | 125 | 1 | 121 | 3.83e-20 | 79.3 |
| Msa0538220 | MtrunA17_Chr7g0244761 | 36.885 | 122 | 72 | 2 | 4 | 125 | 28 | 144 | 1.04e-19 | 79.0 |
| Msa0538220 | MtrunA17_Chr7g0244721 | 37.705 | 122 | 70 | 3 | 4 | 124 | 3 | 119 | 1.30e-19 | 78.2 |
| Msa0538220 | MtrunA17_Chr7g0244661 | 40.650 | 123 | 61 | 4 | 4 | 125 | 3 | 114 | 5.07e-19 | 76.3 |
| Msa0538220 | MtrunA17_Chr7g0244791 | 35.537 | 121 | 73 | 2 | 5 | 125 | 9 | 124 | 4.06e-18 | 74.3 |
| Msa0538220 | MtrunA17_Chr7g0244651 | 37.903 | 124 | 71 | 3 | 4 | 125 | 3 | 122 | 1.01e-16 | 70.5 |
| Msa0538220 | MtrunA17_Chr7g0244751 | 36.364 | 121 | 72 | 2 | 4 | 124 | 3 | 118 | 4.66e-16 | 68.9 |
| Msa0538220 | MtrunA17_Chr7g0233431 | 27.731 | 119 | 77 | 2 | 6 | 124 | 21 | 130 | 4.87e-15 | 66.6 |
| Msa0538220 | MtrunA17_Chr3g0101431 | 30.952 | 126 | 81 | 2 | 1 | 125 | 1 | 121 | 1.35e-13 | 62.4 |
| Msa0538220 | MtrunA17_Chr3g0095991 | 29.268 | 123 | 81 | 2 | 2 | 123 | 3 | 120 | 1.49e-13 | 62.4 |
| Msa0538220 | MtrunA17_Chr3g0107481 | 30.400 | 125 | 74 | 5 | 1 | 124 | 1 | 113 | 3.33e-13 | 61.2 |
| Msa0538220 | MtrunA17_Chr3g0095951 | 29.268 | 123 | 81 | 2 | 2 | 123 | 3 | 120 | 4.25e-13 | 61.2 |
| Msa0538220 | MtrunA17_Chr3g0104901 | 30.159 | 126 | 77 | 3 | 6 | 125 | 2 | 122 | 7.93e-13 | 60.5 |
| Msa0538220 | MtrunA17_Chr3g0104971 | 30.579 | 121 | 78 | 2 | 6 | 125 | 7 | 122 | 9.82e-13 | 60.5 |
| Msa0538220 | MtrunA17_Chr3g0105021 | 31.624 | 117 | 74 | 2 | 10 | 125 | 11 | 122 | 1.19e-12 | 60.1 |
| Msa0538220 | MtrunA17_Chr3g0105011 | 31.624 | 117 | 74 | 2 | 10 | 125 | 11 | 122 | 1.19e-12 | 60.1 |
| Msa0538220 | MtrunA17_Chr3g0104951 | 35.417 | 96 | 56 | 2 | 31 | 125 | 32 | 122 | 1.51e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0104931 | 35.417 | 96 | 56 | 2 | 31 | 125 | 32 | 122 | 1.51e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0104941 | 35.417 | 96 | 56 | 2 | 31 | 125 | 32 | 122 | 1.51e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0104921 | 35.417 | 96 | 56 | 2 | 31 | 125 | 22 | 112 | 1.56e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0104911 | 35.417 | 96 | 56 | 2 | 31 | 125 | 22 | 112 | 1.56e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0096021 | 28.455 | 123 | 82 | 2 | 2 | 123 | 3 | 120 | 1.90e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0104981 | 30.833 | 120 | 77 | 2 | 6 | 124 | 7 | 121 | 1.95e-12 | 59.7 |
| Msa0538220 | MtrunA17_Chr3g0096031 | 28.455 | 123 | 82 | 2 | 2 | 123 | 3 | 120 | 2.21e-12 | 59.3 |
| Msa0538220 | MtrunA17_Chr3g0104991 | 30.579 | 121 | 78 | 2 | 6 | 125 | 7 | 122 | 2.24e-12 | 59.3 |
| Msa0538220 | MtrunA17_Chr1g0165751 | 38.333 | 120 | 67 | 3 | 4 | 122 | 3 | 116 | 2.74e-12 | 59.3 |
| Msa0538220 | MtrunA17_Chr3g0105001 | 30.252 | 119 | 77 | 2 | 6 | 123 | 7 | 120 | 4.11e-12 | 58.5 |
| Msa0538220 | MtrunA17_Chr3g0105041 | 35.417 | 96 | 56 | 2 | 31 | 125 | 32 | 122 | 5.15e-12 | 58.5 |
| Msa0538220 | MtrunA17_Chr3g0104961 | 29.752 | 121 | 79 | 2 | 6 | 125 | 7 | 122 | 1.51e-11 | 57.4 |
| Msa0538220 | MtrunA17_Chr3g0105031 | 31.304 | 115 | 73 | 2 | 10 | 123 | 1 | 110 | 2.80e-11 | 56.2 |
| Msa0538220 | MtrunA17_Chr4g0012921 | 33.613 | 119 | 72 | 4 | 9 | 125 | 5 | 118 | 2.84e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538220 | AT2G15050.3 | 51.667 | 120 | 52 | 3 | 9 | 125 | 6 | 122 | 8.88e-33 | 112 |
| Msa0538220 | AT2G15050.1 | 51.695 | 118 | 51 | 3 | 9 | 123 | 6 | 120 | 8.66e-32 | 109 |
| Msa0538220 | AT2G15050.2 | 52.252 | 111 | 47 | 3 | 9 | 116 | 6 | 113 | 8.55e-30 | 103 |
| Msa0538220 | AT2G38540.1 | 44.444 | 117 | 61 | 2 | 9 | 125 | 6 | 118 | 1.28e-29 | 103 |
| Msa0538220 | AT5G01870.1 | 44.348 | 115 | 58 | 4 | 11 | 125 | 8 | 116 | 2.03e-28 | 100 |
| Msa0538220 | AT3G08770.1 | 48.515 | 101 | 48 | 3 | 25 | 125 | 17 | 113 | 6.96e-27 | 96.7 |
| Msa0538220 | AT3G08770.2 | 49.495 | 99 | 46 | 3 | 25 | 123 | 17 | 111 | 2.88e-26 | 95.1 |
| Msa0538220 | AT5G59320.1 | 46.847 | 111 | 53 | 3 | 15 | 125 | 11 | 115 | 2.38e-25 | 92.8 |
| Msa0538220 | AT5G59310.1 | 46.364 | 110 | 47 | 4 | 16 | 125 | 15 | 112 | 2.53e-24 | 90.1 |
| Msa0538220 | AT2G38530.1 | 43.590 | 117 | 62 | 2 | 9 | 125 | 6 | 118 | 3.40e-24 | 90.1 |
| Msa0538220 | AT3G51600.1 | 43.590 | 117 | 62 | 2 | 9 | 125 | 6 | 118 | 1.64e-23 | 88.2 |
| Msa0538220 | AT3G51590.1 | 40.171 | 117 | 64 | 3 | 9 | 125 | 6 | 116 | 1.26e-22 | 85.9 |
| Msa0538220 | AT2G18370.1 | 35.043 | 117 | 69 | 2 | 10 | 124 | 4 | 115 | 3.80e-19 | 77.0 |
| Msa0538220 | AT4G33355.1 | 34.426 | 122 | 73 | 3 | 4 | 125 | 5 | 119 | 5.31e-15 | 66.6 |
| Msa0538220 | AT4G33355.2 | 34.454 | 119 | 71 | 3 | 4 | 122 | 5 | 116 | 7.30e-14 | 63.5 |
Find 48 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGAAGTTGCTTCTTTC+TGG | 0.013551 | 4_1:-17383057 | Msa0538220:three_prime_UTR |
| AATGATATGTGATGTTTATT+TGG | 0.154025 | 4_1:-17382912 | Msa0538220:three_prime_UTR |
| GTTTATTTGGGAATGAAATT+TGG | 0.179642 | 4_1:-17382899 | Msa0538220:three_prime_UTR |
| TGGTTTGAGCCATAGTATTA+AGG | 0.282339 | 4_1:+17383724 | None:intergenic |
| GAAGACCAGCAGCAAGATTA+AGG | 0.290840 | 4_1:+17383625 | None:intergenic |
| GGCAACTAAGCTTGTTTGTT+TGG | 0.318434 | 4_1:-17383895 | Msa0538220:CDS |
| ATTGTGTTTCTTGTAACTTT+TGG | 0.338311 | 4_1:-17383870 | Msa0538220:CDS |
| ATGATATGTGATGTTTATTT+GGG | 0.376853 | 4_1:-17382911 | Msa0538220:three_prime_UTR |
| GCCCTAATACCGACTGTAAC+AGG | 0.378156 | 4_1:-17383566 | Msa0538220:intron |
| TACCTGTTACAGTCGGTATT+AGG | 0.379758 | 4_1:+17383564 | None:intergenic |
| GGGTATAAGCTTGTCACAAC+TGG | 0.381388 | 4_1:+17383813 | None:intergenic |
| AATAAACATCACATATCATT+AGG | 0.393627 | 4_1:+17382915 | None:intergenic |
| ACCTGTTACAGTCGGTATTA+GGG | 0.395247 | 4_1:+17383565 | None:intergenic |
| CATCATGGGTTACTCAACTA+TGG | 0.397979 | 4_1:-17383916 | Msa0538220:exon |
| GTAACAGCTGCTTCAGCCTT+AGG | 0.410392 | 4_1:+17383846 | None:intergenic |
| CTCTATAATACATGCTATAG+TGG | 0.418803 | 4_1:+17382966 | None:intergenic |
| CGTTAGTGTGTGAGAATAAG+AGG | 0.419578 | 4_1:-17383108 | Msa0538220:three_prime_UTR |
| AGTAAGGAACCTTAATACTA+TGG | 0.425103 | 4_1:-17383733 | Msa0538220:CDS |
| GCTAACAGCATTCTTAATAC+AGG | 0.426517 | 4_1:+17383677 | None:intergenic |
| AACAGCTCTACGATCATTTG+TGG | 0.431202 | 4_1:+17383704 | None:intergenic |
| TTAAACCTTAATCTTGCTGC+TGG | 0.432503 | 4_1:-17383630 | Msa0538220:CDS |
| AGTCGGTATTAGGGCTGATC+TGG | 0.443403 | 4_1:+17383574 | None:intergenic |
| TGTGTTTCTTACATTATGAC+TGG | 0.454062 | 4_1:-17383789 | Msa0538220:CDS |
| GAATGAAATTTGGAAAGGTT+AGG | 0.464354 | 4_1:-17382889 | Msa0538220:three_prime_UTR |
| CACAGTGTTGTAATGGAGTA+AGG | 0.467403 | 4_1:-17383749 | Msa0538220:CDS |
| AAGAATGCTGTTAGCCAAAG+TGG | 0.478268 | 4_1:-17383669 | Msa0538220:CDS |
| CTACTACATTAGCCTCATCA+TGG | 0.479493 | 4_1:-17383931 | Msa0538220:exon |
| AAATAACAAAATATTTATGT+TGG | 0.485884 | 4_1:+17383954 | None:intergenic |
| GTTCCAGCACAGTGTTGTAA+TGG | 0.512359 | 4_1:-17383756 | Msa0538220:CDS |
| AAATTTGGAAAGGTTAGGTA+TGG | 0.516921 | 4_1:-17382884 | Msa0538220:three_prime_UTR |
| TTTGGGAATGAAATTTGGAA+AGG | 0.521335 | 4_1:-17382894 | Msa0538220:three_prime_UTR |
| ATGTTAACACCACATTTCCT+TGG | 0.522311 | 4_1:+17383603 | None:intergenic |
| GTATTAGGGCTGATCTGGTA+AGG | 0.526182 | 4_1:+17383579 | None:intergenic |
| ACTCCATTACAACACTGTGC+TGG | 0.541228 | 4_1:+17383753 | None:intergenic |
| GCTTGTCACAACTGGACCAC+AGG | 0.541996 | 4_1:+17383821 | None:intergenic |
| AAAATATTTATGTTGGCAAG+TGG | 0.549592 | 4_1:+17383961 | None:intergenic |
| ATCTTGCTGCTGGTCTTCCA+AGG | 0.551966 | 4_1:-17383620 | Msa0538220:CDS |
| TACTACATTAGCCTCATCAT+GGG | 0.552938 | 4_1:-17383930 | Msa0538220:exon |
| TAGTGTAACTGAAACCACTT+TGG | 0.557954 | 4_1:+17383655 | None:intergenic |
| GTTTCTTACATTATGACTGG+TGG | 0.579604 | 4_1:-17383786 | Msa0538220:CDS |
| GCTGGTCTTCCAAGGAAATG+TGG | 0.584199 | 4_1:-17383612 | Msa0538220:CDS |
| GAAGCAGCTGTTACATCCTG+TGG | 0.593294 | 4_1:-17383837 | Msa0538220:CDS |
| TGTTAGTGTACACTTTATTG+TGG | 0.612731 | 4_1:-17382989 | Msa0538220:three_prime_UTR |
| TGTGTCTGTGTGTTAGTGTG+TGG | 0.630384 | 4_1:-17383018 | Msa0538220:three_prime_UTR |
| GTCATAATGTAAGAAACACA+AGG | 0.653065 | 4_1:+17383792 | None:intergenic |
| TAGTTGAGTAACCCATGATG+AGG | 0.658599 | 4_1:+17383919 | None:intergenic |
| TAAGTGGTACCTGTTACAGT+CGG | 0.691959 | 4_1:+17383557 | None:intergenic |
| TCATAATGTAAGAAACACAA+GGG | 0.708823 | 4_1:+17383793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACAAAATATTTATGT+TGG | + | chr4_1:17382908-17382927 | None:intergenic | 10.0% |
| !! | AAATAACAAAATATTTATGT+TGG | + | chr4_1:17382908-17382927 | None:intergenic | 10.0% |
| !!! | TAATTTGATTTTAGTTTTGT+GGG | + | chr4_1:17382877-17382896 | None:intergenic | 15.0% |
| !!! | TTAATTTGATTTTAGTTTTG+TGG | + | chr4_1:17382878-17382897 | None:intergenic | 15.0% |
| !! | GAAAATACATATATACTAAA+GGG | + | chr4_1:17383352-17383371 | None:intergenic | 15.0% |
| !! | AGAAAATACATATATACTAA+AGG | + | chr4_1:17383353-17383372 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCTCTCAAAAAA+TGG | - | chr4_1:17383391-17383410 | Msa0538220:intron | 15.0% |
| !! | AACATAACATTATAGTAAAA+TGG | + | chr4_1:17383519-17383538 | None:intergenic | 15.0% |
| !!! | ATACATATAAAGTTTTTTGT+TGG | + | chr4_1:17383626-17383645 | None:intergenic | 15.0% |
| !! | AACAAAAAACTTTATATGTA+TGG | - | chr4_1:17383625-17383644 | Msa0538220:CDS | 15.0% |
| !!! | TAATTTGATTTTAGTTTTGT+GGG | + | chr4_1:17382877-17382896 | None:intergenic | 15.0% |
| !!! | TTAATTTGATTTTAGTTTTG+TGG | + | chr4_1:17382878-17382897 | None:intergenic | 15.0% |
| !! | GAAAATACATATATACTAAA+GGG | + | chr4_1:17383352-17383371 | None:intergenic | 15.0% |
| !! | AGAAAATACATATATACTAA+AGG | + | chr4_1:17383353-17383372 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCTCTCAAAAAA+TGG | - | chr4_1:17383391-17383410 | Msa0538220:intron | 15.0% |
| !! | AACATAACATTATAGTAAAA+TGG | + | chr4_1:17383519-17383538 | None:intergenic | 15.0% |
| !!! | ATACATATAAAGTTTTTTGT+TGG | + | chr4_1:17383626-17383645 | None:intergenic | 15.0% |
| !! | AACAAAAAACTTTATATGTA+TGG | - | chr4_1:17383625-17383644 | Msa0538220:CDS | 15.0% |
| !! | ACATATGTGAATATTATAAG+TGG | + | chr4_1:17383321-17383340 | None:intergenic | 20.0% |
| !! | AATAAACATCACATATCATT+AGG | + | chr4_1:17383947-17383966 | None:intergenic | 20.0% |
| !! | AATGATATGTGATGTTTATT+TGG | - | chr4_1:17383947-17383966 | Msa0538220:five_prime_UTR | 20.0% |
| !! | ATGATATGTGATGTTTATTT+GGG | - | chr4_1:17383948-17383967 | Msa0538220:five_prime_UTR | 20.0% |
| !! | ACATATGTGAATATTATAAG+TGG | + | chr4_1:17383321-17383340 | None:intergenic | 20.0% |
| !! | AATAAACATCACATATCATT+AGG | + | chr4_1:17383947-17383966 | None:intergenic | 20.0% |
| !! | AATGATATGTGATGTTTATT+TGG | - | chr4_1:17383947-17383966 | Msa0538220:five_prime_UTR | 20.0% |
| !! | ATGATATGTGATGTTTATTT+GGG | - | chr4_1:17383948-17383967 | Msa0538220:five_prime_UTR | 20.0% |
| ! | AAAATATTTATGTTGGCAAG+TGG | + | chr4_1:17382901-17382920 | None:intergenic | 25.0% |
| !! | ATTGTGTTTCTTGTAACTTT+TGG | - | chr4_1:17382989-17383008 | Msa0538220:three_prime_UTR | 25.0% |
| ! | TCATAATGTAAGAAACACAA+GGG | + | chr4_1:17383069-17383088 | None:intergenic | 25.0% |
| ! | TAATCTTGTCACATATTGTA+TGG | + | chr4_1:17383555-17383574 | None:intergenic | 25.0% |
| ! | AACTCATCAGACATATATAT+TGG | + | chr4_1:17383660-17383679 | None:intergenic | 25.0% |
| ! | GTTTATTTGGGAATGAAATT+TGG | - | chr4_1:17383960-17383979 | Msa0538220:five_prime_UTR | 25.0% |
| ! | AAAATATTTATGTTGGCAAG+TGG | + | chr4_1:17382901-17382920 | None:intergenic | 25.0% |
| !! | ATTGTGTTTCTTGTAACTTT+TGG | - | chr4_1:17382989-17383008 | Msa0538220:three_prime_UTR | 25.0% |
| ! | TCATAATGTAAGAAACACAA+GGG | + | chr4_1:17383069-17383088 | None:intergenic | 25.0% |
| ! | TAATCTTGTCACATATTGTA+TGG | + | chr4_1:17383555-17383574 | None:intergenic | 25.0% |
| ! | AACTCATCAGACATATATAT+TGG | + | chr4_1:17383660-17383679 | None:intergenic | 25.0% |
| ! | GTTTATTTGGGAATGAAATT+TGG | - | chr4_1:17383960-17383979 | Msa0538220:five_prime_UTR | 25.0% |
| GTCATAATGTAAGAAACACA+AGG | + | chr4_1:17383070-17383089 | None:intergenic | 30.0% | |
| TGTGTTTCTTACATTATGAC+TGG | - | chr4_1:17383070-17383089 | Msa0538220:three_prime_UTR | 30.0% | |
| AGTAAGGAACCTTAATACTA+TGG | - | chr4_1:17383126-17383145 | Msa0538220:three_prime_UTR | 30.0% | |
| TGTGACAAGATTAAAGTAGT+TGG | - | chr4_1:17383562-17383581 | Msa0538220:intron | 30.0% | |
| TGTTAGTGTACACTTTATTG+TGG | - | chr4_1:17383870-17383889 | Msa0538220:CDS | 30.0% | |
| CTCTATAATACATGCTATAG+TGG | + | chr4_1:17383896-17383915 | None:intergenic | 30.0% | |
| TTTGGGAATGAAATTTGGAA+AGG | - | chr4_1:17383965-17383984 | Msa0538220:five_prime_UTR | 30.0% | |
| GAATGAAATTTGGAAAGGTT+AGG | - | chr4_1:17383970-17383989 | Msa0538220:five_prime_UTR | 30.0% | |
| AAATTTGGAAAGGTTAGGTA+TGG | - | chr4_1:17383975-17383994 | Msa0538220:five_prime_UTR | 30.0% | |
| GTCATAATGTAAGAAACACA+AGG | + | chr4_1:17383070-17383089 | None:intergenic | 30.0% | |
| TGTGTTTCTTACATTATGAC+TGG | - | chr4_1:17383070-17383089 | Msa0538220:three_prime_UTR | 30.0% | |
| AGTAAGGAACCTTAATACTA+TGG | - | chr4_1:17383126-17383145 | Msa0538220:three_prime_UTR | 30.0% | |
| TGTGACAAGATTAAAGTAGT+TGG | - | chr4_1:17383562-17383581 | Msa0538220:intron | 30.0% | |
| TGTTAGTGTACACTTTATTG+TGG | - | chr4_1:17383870-17383889 | Msa0538220:CDS | 30.0% | |
| CTCTATAATACATGCTATAG+TGG | + | chr4_1:17383896-17383915 | None:intergenic | 30.0% | |
| TTTGGGAATGAAATTTGGAA+AGG | - | chr4_1:17383965-17383984 | Msa0538220:five_prime_UTR | 30.0% | |
| GAATGAAATTTGGAAAGGTT+AGG | - | chr4_1:17383970-17383989 | Msa0538220:five_prime_UTR | 30.0% | |
| AAATTTGGAAAGGTTAGGTA+TGG | - | chr4_1:17383975-17383994 | Msa0538220:five_prime_UTR | 30.0% | |
| ! | TACTACATTAGCCTCATCAT+GGG | - | chr4_1:17382929-17382948 | Msa0538220:three_prime_UTR | 35.0% |
| ! | TCTTGTAACTTTTGGTCCTA+AGG | - | chr4_1:17382997-17383016 | Msa0538220:three_prime_UTR | 35.0% |
| GTTTCTTACATTATGACTGG+TGG | - | chr4_1:17383073-17383092 | Msa0538220:three_prime_UTR | 35.0% | |
| TGGTTTGAGCCATAGTATTA+AGG | + | chr4_1:17383138-17383157 | None:intergenic | 35.0% | |
| GCTAACAGCATTCTTAATAC+AGG | + | chr4_1:17383185-17383204 | None:intergenic | 35.0% | |
| TAGTGTAACTGAAACCACTT+TGG | + | chr4_1:17383207-17383226 | None:intergenic | 35.0% | |
| TTAAACCTTAATCTTGCTGC+TGG | - | chr4_1:17383229-17383248 | Msa0538220:intron | 35.0% | |
| ATGTTAACACCACATTTCCT+TGG | + | chr4_1:17383259-17383278 | None:intergenic | 35.0% | |
| ! | TACTACATTAGCCTCATCAT+GGG | - | chr4_1:17382929-17382948 | Msa0538220:three_prime_UTR | 35.0% |
| ! | TCTTGTAACTTTTGGTCCTA+AGG | - | chr4_1:17382997-17383016 | Msa0538220:three_prime_UTR | 35.0% |
| GTTTCTTACATTATGACTGG+TGG | - | chr4_1:17383073-17383092 | Msa0538220:three_prime_UTR | 35.0% | |
| TGGTTTGAGCCATAGTATTA+AGG | + | chr4_1:17383138-17383157 | None:intergenic | 35.0% | |
| GCTAACAGCATTCTTAATAC+AGG | + | chr4_1:17383185-17383204 | None:intergenic | 35.0% | |
| TAGTGTAACTGAAACCACTT+TGG | + | chr4_1:17383207-17383226 | None:intergenic | 35.0% | |
| TTAAACCTTAATCTTGCTGC+TGG | - | chr4_1:17383229-17383248 | Msa0538220:intron | 35.0% | |
| ATGTTAACACCACATTTCCT+TGG | + | chr4_1:17383259-17383278 | None:intergenic | 35.0% | |
| ! | CTACTACATTAGCCTCATCA+TGG | - | chr4_1:17382928-17382947 | Msa0538220:three_prime_UTR | 40.0% |
| TAGTTGAGTAACCCATGATG+AGG | + | chr4_1:17382943-17382962 | None:intergenic | 40.0% | |
| ! | CATCATGGGTTACTCAACTA+TGG | - | chr4_1:17382943-17382962 | Msa0538220:three_prime_UTR | 40.0% |
| ! | GGCAACTAAGCTTGTTTGTT+TGG | - | chr4_1:17382964-17382983 | Msa0538220:three_prime_UTR | 40.0% |
| ! | CACAGTGTTGTAATGGAGTA+AGG | - | chr4_1:17383110-17383129 | Msa0538220:three_prime_UTR | 40.0% |
| AACAGCTCTACGATCATTTG+TGG | + | chr4_1:17383158-17383177 | None:intergenic | 40.0% | |
| AAGAATGCTGTTAGCCAAAG+TGG | - | chr4_1:17383190-17383209 | Msa0538220:intron | 40.0% | |
| ACCTGTTACAGTCGGTATTA+GGG | + | chr4_1:17383297-17383316 | None:intergenic | 40.0% | |
| TACCTGTTACAGTCGGTATT+AGG | + | chr4_1:17383298-17383317 | None:intergenic | 40.0% | |
| TAAGTGGTACCTGTTACAGT+CGG | + | chr4_1:17383305-17383324 | None:intergenic | 40.0% | |
| TTGTATGTAGCCCTACAGAT+CGG | - | chr4_1:17383422-17383441 | Msa0538220:intron | 40.0% | |
| AGCTCAATCTCGATCATACA+TGG | + | chr4_1:17383469-17383488 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAGTGTGCACTG+AGG | - | chr4_1:17383686-17383705 | Msa0538220:CDS | 40.0% |
| CGTTAGTGTGTGAGAATAAG+AGG | - | chr4_1:17383751-17383770 | Msa0538220:CDS | 40.0% | |
| CACTTGAAGTTGCTTCTTTC+TGG | - | chr4_1:17383802-17383821 | Msa0538220:CDS | 40.0% | |
| ! | CTACTACATTAGCCTCATCA+TGG | - | chr4_1:17382928-17382947 | Msa0538220:three_prime_UTR | 40.0% |
| TAGTTGAGTAACCCATGATG+AGG | + | chr4_1:17382943-17382962 | None:intergenic | 40.0% | |
| ! | CATCATGGGTTACTCAACTA+TGG | - | chr4_1:17382943-17382962 | Msa0538220:three_prime_UTR | 40.0% |
| ! | GGCAACTAAGCTTGTTTGTT+TGG | - | chr4_1:17382964-17382983 | Msa0538220:three_prime_UTR | 40.0% |
| ! | CACAGTGTTGTAATGGAGTA+AGG | - | chr4_1:17383110-17383129 | Msa0538220:three_prime_UTR | 40.0% |
| AACAGCTCTACGATCATTTG+TGG | + | chr4_1:17383158-17383177 | None:intergenic | 40.0% | |
| AAGAATGCTGTTAGCCAAAG+TGG | - | chr4_1:17383190-17383209 | Msa0538220:intron | 40.0% | |
| ACCTGTTACAGTCGGTATTA+GGG | + | chr4_1:17383297-17383316 | None:intergenic | 40.0% | |
| TACCTGTTACAGTCGGTATT+AGG | + | chr4_1:17383298-17383317 | None:intergenic | 40.0% | |
| TAAGTGGTACCTGTTACAGT+CGG | + | chr4_1:17383305-17383324 | None:intergenic | 40.0% | |
| TTGTATGTAGCCCTACAGAT+CGG | - | chr4_1:17383422-17383441 | Msa0538220:intron | 40.0% | |
| AGCTCAATCTCGATCATACA+TGG | + | chr4_1:17383469-17383488 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAGTGTGCACTG+AGG | - | chr4_1:17383686-17383705 | Msa0538220:CDS | 40.0% |
| CGTTAGTGTGTGAGAATAAG+AGG | - | chr4_1:17383751-17383770 | Msa0538220:CDS | 40.0% | |
| CACTTGAAGTTGCTTCTTTC+TGG | - | chr4_1:17383802-17383821 | Msa0538220:CDS | 40.0% | |
| GGGTATAAGCTTGTCACAAC+TGG | + | chr4_1:17383049-17383068 | None:intergenic | 45.0% | |
| GTTCCAGCACAGTGTTGTAA+TGG | - | chr4_1:17383103-17383122 | Msa0538220:three_prime_UTR | 45.0% | |
| ACTCCATTACAACACTGTGC+TGG | + | chr4_1:17383109-17383128 | None:intergenic | 45.0% | |
| GAAGACCAGCAGCAAGATTA+AGG | + | chr4_1:17383237-17383256 | None:intergenic | 45.0% | |
| GTATTAGGGCTGATCTGGTA+AGG | + | chr4_1:17383283-17383302 | None:intergenic | 45.0% | |
| TGGTACGATCGAGAATGAGT+CGG | + | chr4_1:17383449-17383468 | None:intergenic | 45.0% | |
| TGTGTCTGTGTGTTAGTGTG+TGG | - | chr4_1:17383841-17383860 | Msa0538220:CDS | 45.0% | |
| GGGTATAAGCTTGTCACAAC+TGG | + | chr4_1:17383049-17383068 | None:intergenic | 45.0% | |
| GTTCCAGCACAGTGTTGTAA+TGG | - | chr4_1:17383103-17383122 | Msa0538220:three_prime_UTR | 45.0% | |
| ACTCCATTACAACACTGTGC+TGG | + | chr4_1:17383109-17383128 | None:intergenic | 45.0% | |
| GAAGACCAGCAGCAAGATTA+AGG | + | chr4_1:17383237-17383256 | None:intergenic | 45.0% | |
| GTATTAGGGCTGATCTGGTA+AGG | + | chr4_1:17383283-17383302 | None:intergenic | 45.0% | |
| TGGTACGATCGAGAATGAGT+CGG | + | chr4_1:17383449-17383468 | None:intergenic | 45.0% | |
| TGTGTCTGTGTGTTAGTGTG+TGG | - | chr4_1:17383841-17383860 | Msa0538220:CDS | 45.0% | |
| GTAACAGCTGCTTCAGCCTT+AGG | + | chr4_1:17383016-17383035 | None:intergenic | 50.0% | |
| GAAGCAGCTGTTACATCCTG+TGG | - | chr4_1:17383022-17383041 | Msa0538220:three_prime_UTR | 50.0% | |
| !! | ATCTTGCTGCTGGTCTTCCA+AGG | - | chr4_1:17383239-17383258 | Msa0538220:intron | 50.0% |
| !! | GCTGGTCTTCCAAGGAAATG+TGG | - | chr4_1:17383247-17383266 | Msa0538220:intron | 50.0% |
| AGTCGGTATTAGGGCTGATC+TGG | + | chr4_1:17383288-17383307 | None:intergenic | 50.0% | |
| ! | GCCCTAATACCGACTGTAAC+AGG | - | chr4_1:17383293-17383312 | Msa0538220:intron | 50.0% |
| GGTACGATCGAGAATGAGTC+GGG | + | chr4_1:17383448-17383467 | None:intergenic | 50.0% | |
| GTAACAGCTGCTTCAGCCTT+AGG | + | chr4_1:17383016-17383035 | None:intergenic | 50.0% | |
| GAAGCAGCTGTTACATCCTG+TGG | - | chr4_1:17383022-17383041 | Msa0538220:three_prime_UTR | 50.0% | |
| !! | ATCTTGCTGCTGGTCTTCCA+AGG | - | chr4_1:17383239-17383258 | Msa0538220:intron | 50.0% |
| !! | GCTGGTCTTCCAAGGAAATG+TGG | - | chr4_1:17383247-17383266 | Msa0538220:intron | 50.0% |
| AGTCGGTATTAGGGCTGATC+TGG | + | chr4_1:17383288-17383307 | None:intergenic | 50.0% | |
| ! | GCCCTAATACCGACTGTAAC+AGG | - | chr4_1:17383293-17383312 | Msa0538220:intron | 50.0% |
| GGTACGATCGAGAATGAGTC+GGG | + | chr4_1:17383448-17383467 | None:intergenic | 50.0% | |
| GCTTGTCACAACTGGACCAC+AGG | + | chr4_1:17383041-17383060 | None:intergenic | 55.0% | |
| ATGAGTCGGGCCGATCTGTA+GGG | + | chr4_1:17383435-17383454 | None:intergenic | 55.0% | |
| AATGAGTCGGGCCGATCTGT+AGG | + | chr4_1:17383436-17383455 | None:intergenic | 55.0% | |
| GCTTGTCACAACTGGACCAC+AGG | + | chr4_1:17383041-17383060 | None:intergenic | 55.0% | |
| ATGAGTCGGGCCGATCTGTA+GGG | + | chr4_1:17383435-17383454 | None:intergenic | 55.0% | |
| AATGAGTCGGGCCGATCTGT+AGG | + | chr4_1:17383436-17383455 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17382874 | 17384007 | 17382874 | ID=Msa0538220;Name=Msa0538220 |
| chr4_1 | mRNA | 17382874 | 17384007 | 17382874 | ID=Msa0538220-mRNA-1;Parent=Msa0538220;Name=Msa0538220-mRNA-1;_AED=0.18;_eAED=0.18;_QI=73|1|1|1|1|1|2|301|125 |
| chr4_1 | exon | 17382874 | 17383184 | 17382874 | ID=Msa0538220-mRNA-1:exon:5190;Parent=Msa0538220-mRNA-1 |
| chr4_1 | exon | 17383567 | 17384007 | 17383567 | ID=Msa0538220-mRNA-1:exon:5189;Parent=Msa0538220-mRNA-1 |
| chr4_1 | five_prime_UTR | 17383935 | 17384007 | 17383935 | ID=Msa0538220-mRNA-1:five_prime_utr;Parent=Msa0538220-mRNA-1 |
| chr4_1 | CDS | 17383567 | 17383934 | 17383567 | ID=Msa0538220-mRNA-1:cds;Parent=Msa0538220-mRNA-1 |
| chr4_1 | CDS | 17383175 | 17383184 | 17383175 | ID=Msa0538220-mRNA-1:cds;Parent=Msa0538220-mRNA-1 |
| chr4_1 | three_prime_UTR | 17382874 | 17383174 | 17382874 | ID=Msa0538220-mRNA-1:three_prime_utr;Parent=Msa0538220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
