AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716800 MtrunA17_Chr5g0404141 56.187 299 57 3 16 240 18 316 2.52e-110 320
Msa0716800 MtrunA17_Chr5g0404211 58.478 289 44 3 17 233 19 303 2.13e-108 314
Msa0716800 MtrunA17_Chr8g0373201 48.288 292 74 3 16 230 18 309 9.26e-87 259
Msa0716800 MtrunA17_Chr5g0404171 81.188 101 19 0 141 241 1 101 1.00e-55 173
Msa0716800 MtrunA17_Chr5g0404161 58.896 163 41 3 3 140 16 177 2.70e-55 176
Msa0716800 MtrunA17_Chr3g0123881 28.618 304 122 9 18 240 25 314 2.13e-26 104
Msa0716800 MtrunA17_Chr5g0426241 25.914 301 136 5 3 226 8 298 1.28e-25 102
Msa0716800 MtrunA17_Chr3g0136411 29.197 274 108 6 30 227 38 301 4.78e-25 100
Msa0716800 MtrunA17_Chr2g0279171 27.322 183 94 4 15 174 24 190 5.96e-14 70.1
Msa0716800 MtrunA17_Chr2g0279171 41.463 82 47 1 146 226 220 301 1.29e-12 66.2
Msa0716800 MtrunA17_Chr8g0381981 35.000 100 61 2 145 240 73 172 6.19e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716800 AT2G18360.1 42.857 308 92 4 6 229 2 309 4.48e-78 238
Msa0716800 AT4G36610.1 42.157 306 95 4 6 229 2 307 7.48e-73 225
Msa0716800 AT2G18360.2 38.376 271 83 4 6 192 2 272 9.49e-55 177
Msa0716800 AT5G21950.1 28.920 287 123 6 15 226 21 301 1.94e-29 112
Msa0716800 AT5G21950.6 29.123 285 121 6 17 226 75 353 7.38e-29 112
Msa0716800 AT4G33180.1 26.829 287 127 5 17 226 24 304 1.05e-26 105
Msa0716800 AT4G39955.1 26.821 302 134 7 15 239 20 311 3.88e-25 101
Msa0716800 AT5G21950.7 28.458 253 100 6 15 192 21 267 2.73e-22 92.8
Msa0716800 AT1G78210.1 37.063 143 59 4 18 137 23 157 3.82e-20 87.8
Msa0716800 AT5G21950.3 34.014 147 68 2 15 138 21 161 2.08e-18 81.3
Msa0716800 AT5G21950.2 34.014 147 68 2 15 138 21 161 2.08e-18 81.3
Msa0716800 AT5G21950.5 34.014 147 68 2 15 138 73 213 4.27e-18 81.3
Msa0716800 AT5G21950.4 34.014 147 68 2 15 138 73 213 4.27e-18 81.3
Msa0716800 AT4G33180.2 30.769 156 74 3 17 144 24 173 1.12e-15 73.9
Msa0716800 AT1G72620.1 25.907 193 99 6 8 174 45 219 4.01e-13 68.2
Msa0716800 AT1G17430.1 26.768 198 93 7 8 174 41 217 1.01e-11 63.9

Find 146 sgRNAs with CRISPR-Local

Find 757 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTACCTGCGAAAATTT+TGG 0.091229 5_1:-10315375 None:intergenic
ATAATTACATGCGGTAATTT+TGG 0.137348 5_1:-10322876 None:intergenic
GTTCAAGCTGTGGTTGTTAC+TGG 0.212355 5_1:+10322330 Msa0716800:CDS
CAGGTACAGTTATCAGATTC+TGG 0.215898 5_1:+10321977 Msa0716800:CDS
TGCTGGTCATTTGGCTCATT+TGG 0.218297 5_1:+10323262 Msa0716800:CDS
CAGGTACAGTTATGAGATTT+TGG 0.234420 5_1:+10311376 Msa0716800:five_prime_UTR
TGAACACGGTGAACGTAATT+TGG 0.258916 5_1:+10311292 Msa0716800:five_prime_UTR
TTTGGCTATGACAGAATCTA+TGG 0.309509 5_1:+10322359 Msa0716800:CDS
GTGTTATGCAAATTTCAATA+AGG 0.321018 5_1:+10323459 Msa0716800:three_prime_UTR
GGTTGTTACTGGTTCAGTTT+TGG 0.327599 5_1:+10322341 Msa0716800:CDS
AGCGACCATGTGTTTATAAT+AGG 0.329987 5_1:+10315957 Msa0716800:five_prime_UTR
ACATATTCATAGATGTGAAT+TGG 0.340839 5_1:-10323357 None:intergenic
TCATCAAGCATAATATGAAT+TGG 0.356245 5_1:-10316029 None:intergenic
TGGAAGAAAGAAACTTCTTT+AGG 0.358269 5_1:-10323310 None:intergenic
GCATATTCATTGATATGAAC+TGG 0.358339 5_1:-10316065 None:intergenic
AATAAAGAATGCTGGTCATT+TGG 0.359126 5_1:+10323253 Msa0716800:CDS
CAATGACCGGTCCGTCTTAT+CGG 0.366913 5_1:-10311589 None:intergenic
GGTAGTAAGTGGTGCAGTTT+TGG 0.371501 5_1:+10311746 Msa0716800:five_prime_UTR
TCACATCTATGAATATGTTA+AGG 0.373587 5_1:+10323362 Msa0716800:exon
TCTCATCAAGGACTTTCTTA+AGG 0.375056 5_1:+10311911 Msa0716800:five_prime_UTR
TCAAGCCGAGTGCTTGGCGG+TGG 0.379391 5_1:+10311617 Msa0716800:five_prime_UTR
GACTTGGAAATGGTGTTAGA+AGG 0.380475 5_1:-10311402 None:intergenic
TGCTGGATTCTCTTCTTGTT+CGG 0.380760 5_1:+10311806 Msa0716800:five_prime_UTR
CCTTAAGCAATTTCTTGCTT+CGG 0.386650 5_1:+10315982 Msa0716800:five_prime_UTR
CTCCACGGCTTCTGCGGTGA+TGG 0.387211 5_1:+10311477 Msa0716800:five_prime_UTR
TGGAATGGTGGCGTTTAAAA+TGG 0.401285 5_1:+10311692 Msa0716800:five_prime_UTR
TGGAATGGTGGCGTTTAAAA+TGG 0.401285 5_1:+10322287 Msa0716800:CDS
GTCTAACATTACCTCCATCT+TGG 0.401693 5_1:-10323506 None:intergenic
GATACATATTTACAGGAAGC+TGG 0.411250 5_1:+10315880 Msa0716800:intron
AACGACCATGTATTTACAAT+AGG 0.419462 5_1:+10323285 Msa0716800:CDS
TGCAGGTGATGTTCTCAAAT+AGG 0.420578 5_1:+10322796 Msa0716800:intron
TTAATGCCATCTTCTGTTGA+AGG 0.421465 5_1:+10311834 Msa0716800:five_prime_UTR
CAAGCCGAGTGCTTGGCGGT+GGG 0.422769 5_1:+10311618 Msa0716800:five_prime_UTR
CAAGTCGAGTGTTTGGTGGC+AGG 0.425471 5_1:+10322213 Msa0716800:CDS
AGTGTTTGGTGGCAGGATTA+AGG 0.427783 5_1:+10322220 Msa0716800:CDS
TTCAATAAGGCATGTTATGT+TGG 0.429742 5_1:+10323472 Msa0716800:three_prime_UTR
TAATTTGGACACTGGTTAGT+TGG 0.431991 5_1:+10311307 Msa0716800:five_prime_UTR
GAATATGTTAAGGGTGTGTT+TGG 0.440354 5_1:+10323372 Msa0716800:exon
CACATCTATGAATATGTTAA+GGG 0.440621 5_1:+10323363 Msa0716800:exon
AAAATGGCTGAGATGTATAG+TGG 0.456525 5_1:+10311708 Msa0716800:five_prime_UTR
CGATAAGACGGACCGGTCAT+TGG 0.462509 5_1:+10311590 Msa0716800:five_prime_UTR
CTATTAGAGGCTACAATCAA+TGG 0.465518 5_1:+10322834 Msa0716800:CDS
TGCAGGTGATGTTCTCAAAT+CGG 0.466616 5_1:+10315295 Msa0716800:intron
TGCACAATGGAGACAGAGCC+AGG 0.467429 5_1:+10321958 Msa0716800:CDS
AGGTACAGTTATCAGATTCT+GGG 0.474510 5_1:+10321978 Msa0716800:CDS
GGAGCGAGGTGAGCTATTAG+AGG 0.480515 5_1:+10322821 Msa0716800:CDS
TGGATTCAGTTATGGTGGAA+TGG 0.487428 5_1:+10311677 Msa0716800:five_prime_UTR
TGGATTCAGTTATGGTGGAA+TGG 0.487428 5_1:+10322272 Msa0716800:CDS
AGGCATGTTATGTTGGACTA+AGG 0.487689 5_1:+10323479 Msa0716800:three_prime_UTR
GCAGCGAATACATCTTCTGT+GGG 0.489370 5_1:+10315725 Msa0716800:intron
TTCACTCCTTCAACAGAAGA+TGG 0.491079 5_1:-10311840 None:intergenic
TTCATATTTAGAGCAACCTC+TGG 0.491397 5_1:-10323085 None:intergenic
GTGAAGACACTTCTTTCTGT+TGG 0.492067 5_1:+10311858 Msa0716800:five_prime_UTR
CCGAAGCAAGAAATTGCTTA+AGG 0.494759 5_1:-10315982 None:intergenic
GAGAGTGCAATTGAGCACTA+AGG 0.494760 5_1:+10323426 Msa0716800:three_prime_UTR
AGTAAGGCAGTTGAAGATGC+TGG 0.497607 5_1:+10311789 Msa0716800:five_prime_UTR
AGTTGGGTAGTGAAGATGGC+AGG 0.500162 5_1:+10311324 Msa0716800:five_prime_UTR
GGTTAGTTGGGTAGTGAAGA+TGG 0.500320 5_1:+10311320 Msa0716800:five_prime_UTR
GAGAACCACCACTGGCTTGA+GGG 0.502073 5_1:-10322049 None:intergenic
GTGGAGAAATGTGTTGTGGT+TGG 0.502378 5_1:+10311657 Msa0716800:five_prime_UTR
AAGTCCTTGATGAGACGGTT+GGG 0.503284 5_1:-10311903 None:intergenic
AAAGGAGTCTATGATTAGTA+AGG 0.505701 5_1:+10311773 Msa0716800:five_prime_UTR
GATACATATGACAGGAGGCT+AGG 0.506453 5_1:+10323209 Msa0716800:intron
GTTGTGGTTGGATTCAGTTA+TGG 0.507297 5_1:+10311669 Msa0716800:five_prime_UTR
GTTGTGGTTGGATTCAGTTA+TGG 0.507297 5_1:+10322264 Msa0716800:CDS
CAAAATCTCATAACTGTACC+TGG 0.509625 5_1:-10311375 None:intergenic
GAGAACCACTACTGGCTTCG+TGG 0.511337 5_1:-10311454 None:intergenic
TTGATGAGACGGTTGGGAAA+CGG 0.512140 5_1:-10311897 None:intergenic
AATTTGGACACTGGTTAGTT+GGG 0.512586 5_1:+10311308 Msa0716800:five_prime_UTR
GATAAAGAAGGCTGGCCACT+TGG 0.513619 5_1:+10315925 Msa0716800:five_prime_UTR
TGATAAGCCGGATCGATCAC+TGG 0.516525 5_1:+10322185 Msa0716800:CDS
GTCCATCACCGCAGAAGCCG+TGG 0.517790 5_1:-10322074 None:intergenic
ATACATATTTACAGGAAGCT+GGG 0.518388 5_1:+10315881 Msa0716800:intron
AAAATACGATGTTTATGTAC+CGG 0.520544 5_1:+10311539 Msa0716800:five_prime_UTR
TGCTTTGAAGTGGTTTCAGA+TGG 0.523339 5_1:-10322003 None:intergenic
GTCCATCACCGCAGAAGCCG+TGG 0.529252 5_1:-10311479 None:intergenic
GTCTTTGTAGCTAATGACTA+AGG 0.531626 5_1:-10315343 None:intergenic
TGCAGCGAATACATCTTCTG+TGG 0.532773 5_1:+10315724 Msa0716800:intron
GTTTCCCAACCGTCTCATCA+AGG 0.533356 5_1:+10311899 Msa0716800:five_prime_UTR
CGGTGGGGTTAAAGAAACTC+GGG 0.534386 5_1:+10311634 Msa0716800:five_prime_UTR
AAAGTCCTTGATGAGACGGT+TGG 0.534634 5_1:-10311904 None:intergenic
GTGGTTGGATTCAGTTATGG+TGG 0.535201 5_1:+10311672 Msa0716800:five_prime_UTR
GTGGTTGGATTCAGTTATGG+TGG 0.535201 5_1:+10322267 Msa0716800:CDS
AGGCACCTATTGTAAATACA+TGG 0.537294 5_1:-10323290 None:intergenic
AGAACCACTACTGGCTTCGT+GGG 0.537427 5_1:-10311453 None:intergenic
TGGACTAAGGTTGTCCAAGA+TGG 0.537995 5_1:+10323492 Msa0716800:three_prime_UTR
CAGAATCTGATAACTGTACC+TGG 0.539522 5_1:-10321976 None:intergenic
CTCGGGTTTGTGCTTTGAAG+TGG 0.543986 5_1:-10322013 None:intergenic
GCGGTGATGGACTAGCTACT+TGG 0.547477 5_1:+10311490 Msa0716800:five_prime_UTR
GTGGAGAAATGTGTTGTGGT+TGG 0.549522 5_1:+10322252 Msa0716800:CDS
TTTGAAGTAATAAAGAATGC+TGG 0.549992 5_1:+10323245 Msa0716800:CDS
CGGCTCAATCACTGATAAGC+CGG 0.550483 5_1:+10322173 Msa0716800:CDS
TTGTGAGTTGGTTCAAGCTG+TGG 0.551335 5_1:+10322320 Msa0716800:CDS
ATACATATGACAGGAGGCTA+GGG 0.552341 5_1:+10323210 Msa0716800:intron
CCGTGGAGGAGAACCACTAC+TGG 0.555092 5_1:-10311462 None:intergenic
GTTCTCCTCCACGGCTTCTG+CGG 0.555958 5_1:+10322066 Msa0716800:CDS
GTTCTCCTCCACGGCTTCTG+CGG 0.558623 5_1:+10311471 Msa0716800:five_prime_UTR
GGCTGAGATGTATTGTGAGT+TGG 0.559991 5_1:+10322308 Msa0716800:CDS
AAGCCGAGTGCTTGGCGGTG+GGG 0.563288 5_1:+10311619 Msa0716800:five_prime_UTR
AGAACCACCACTGGCTTGAG+GGG 0.567571 5_1:-10322048 None:intergenic
CGGCTTGAAAAGCCAATGAC+CGG 0.568948 5_1:-10311602 None:intergenic
GGAGAACCACCACTGGCTTG+AGG 0.570985 5_1:-10322050 None:intergenic
TGAAAAGCCAGTGATCGATC+CGG 0.574587 5_1:-10322192 None:intergenic
AACATTACAAGAGATAAAGA+AGG 0.574716 5_1:+10315913 Msa0716800:five_prime_UTR
GTTCAAGCCGTGGTAGTAAG+TGG 0.575800 5_1:+10311735 Msa0716800:five_prime_UTR
CCACCAAAGAAAATTAAGTC+CGG 0.578036 5_1:-10311558 None:intergenic
TTACAAGAGATAAAGAAGGC+TGG 0.588072 5_1:+10315917 Msa0716800:five_prime_UTR
TAAGAAAGTCCTTGATGAGA+CGG 0.588220 5_1:-10311908 None:intergenic
GGTGAACGTAATTTGGACAC+TGG 0.590468 5_1:+10311299 Msa0716800:five_prime_UTR
GCGGTGGGGTTAAAGAAACT+CGG 0.594063 5_1:+10311633 Msa0716800:five_prime_UTR
TAACCCCACCGCCAAGCACT+CGG 0.595539 5_1:-10311622 None:intergenic
TAGTGGGTTGGTTCAAGCCG+TGG 0.596910 5_1:+10311725 Msa0716800:five_prime_UTR
ATAATCAAACATGGTGAACA+CGG 0.596997 5_1:+10311278 Msa0716800:five_prime_UTR
AGTTGGACAATGAAGATGGT+TGG 0.598833 5_1:+10321925 Msa0716800:intron
AACTGCACCACTTACTACCA+CGG 0.603216 5_1:-10311742 None:intergenic
CAAACAAATATAATCAAACA+TGG 0.604116 5_1:+10311269 Msa0716800:five_prime_UTR
CCGTGGAGGAGAACCACCAC+TGG 0.606123 5_1:-10322057 None:intergenic
GGCTGAGATGTATAGTGGGT+TGG 0.606775 5_1:+10311713 Msa0716800:five_prime_UTR
CTCAAAACCCCTCAAGCCAG+TGG 0.615635 5_1:+10322041 Msa0716800:CDS
CAAACCCACGAAGCCAGTAG+TGG 0.619279 5_1:+10311449 Msa0716800:intron
TGGCTCAACCACCGATAAGA+CGG 0.620981 5_1:+10311578 Msa0716800:five_prime_UTR
GGTGATGTTCTCAAATAGGA+AGG 0.621499 5_1:+10322800 Msa0716800:intron
GGTGGGGTTAAAGAAACTCG+GGG 0.622939 5_1:+10311635 Msa0716800:five_prime_UTR
CCAGTAGTGGTTCTCCTCCA+CGG 0.624688 5_1:+10311462 Msa0716800:five_prime_UTR
GGTGATGTTCTCAAATCGGA+AGG 0.625620 5_1:+10315299 Msa0716800:intron
CCAGTGGTGGTTCTCCTCCA+CGG 0.625931 5_1:+10322057 Msa0716800:CDS
ACTAAGGTTGTCCAAGATGG+AGG 0.632839 5_1:+10323495 Msa0716800:three_prime_UTR
TGACCGGTCCGTCTTATCGG+TGG 0.636640 5_1:-10311586 None:intergenic
CATATCAATGAATATGCCAA+CGG 0.636748 5_1:+10316071 Msa0716800:CDS
TACACAGTAGAGATAAAACC+AGG 0.638317 5_1:+10311357 Msa0716800:five_prime_UTR
TGGTGTGAAGCTTTGCACAA+TGG 0.641774 5_1:+10321945 Msa0716800:CDS
AAATGGCTGAGATGTATAGT+GGG 0.642705 5_1:+10311709 Msa0716800:five_prime_UTR
CATCACCGCAGAAGCCGTGG+AGG 0.648231 5_1:-10311476 None:intergenic
CATCACCGCAGAAGCCGTGG+AGG 0.648231 5_1:-10322071 None:intergenic
CAACCACCGATAAGACGGAC+CGG 0.649108 5_1:+10311583 Msa0716800:five_prime_UTR
AAAACCCCTCAAGCCAGTGG+TGG 0.654870 5_1:+10322044 Msa0716800:CDS
CGGGGTGGAGAAATGTGTTG+TGG 0.661435 5_1:+10311653 Msa0716800:five_prime_UTR
ATTCAGTTATGGTGGAATGG+TGG 0.669440 5_1:+10311680 Msa0716800:five_prime_UTR
ATTCAGTTATGGTGGAATGG+TGG 0.669440 5_1:+10322275 Msa0716800:CDS
CAATGTGGAGAAATGTGTTG+TGG 0.684131 5_1:+10322248 Msa0716800:CDS
TTCTCAAATAGGAAGGAGCG+AGG 0.685477 5_1:+10322807 Msa0716800:CDS
AGGCACCTATTATAAACACA+TGG 0.694510 5_1:-10315962 None:intergenic
GTCGCTCAATATGAGCCAAG+TGG 0.710691 5_1:-10315940 None:intergenic
CAGCGAATACATCTTCTGTG+GGG 0.727762 5_1:+10315726 Msa0716800:intron
GGGGTTAAAGAAACTCGGGG+TGG 0.739841 5_1:+10311638 Msa0716800:five_prime_UTR
AGGATTAAGGAAACTCAATG+TGG 0.765244 5_1:+10322233 Msa0716800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAGCAATAAATATAAA+AGG + chr5_1:10312184-10312203 Msa0716800:intron 10.0%
!! ATTATTCATATTACTTAAAT+AGG + chr5_1:10312705-10312724 Msa0716800:intron 10.0%
!! GTTATACTAAAAAAATTTAA+GGG - chr5_1:10313930-10313949 None:intergenic 10.0%
!! TGTTATACTAAAAAAATTTA+AGG - chr5_1:10313931-10313950 None:intergenic 10.0%
!! ATTATTTGTGTATTTAATAT+TGG + chr5_1:10314034-10314053 Msa0716800:intron 10.0%
!! TTATTTGTGTATTTAATATT+GGG + chr5_1:10314035-10314054 Msa0716800:intron 10.0%
!!! TAATTTATGTAAATTTTACA+TGG + chr5_1:10314438-10314457 Msa0716800:intron 10.0%
!!! TAAATTAATTTTTTTTTGTC+AGG - chr5_1:10314807-10314826 None:intergenic 10.0%
!! TATATATATAAGAACTTAAT+TGG - chr5_1:10316274-10316293 None:intergenic 10.0%
!!! AAAAAATAATTGATTTGTTA+AGG + chr5_1:10316471-10316490 Msa0716800:intron 10.0%
!!! AAAAATAATTGATTTGTTAA+GGG + chr5_1:10316472-10316491 Msa0716800:intron 10.0%
!!! TTTTTTTTATCAGATTTTTT+TGG - chr5_1:10316508-10316527 None:intergenic 10.0%
!!! ATGTTAGTTAATTTTTTTTA+AGG + chr5_1:10316536-10316555 Msa0716800:intron 10.0%
!!! GTATATAGTTTTTTTTTTTT+TGG + chr5_1:10317698-10317717 Msa0716800:intron 10.0%
!! CATATTAAGTTAAAAAAATA+TGG + chr5_1:10318524-10318543 Msa0716800:intron 10.0%
!!! AAAAAAAAAAAAAAAAGCAT+TGG - chr5_1:10321643-10321662 None:intergenic 10.0%
!! AAAATATATATAGTACATAT+AGG - chr5_1:10322953-10322972 None:intergenic 10.0%
!! TAAAAGGTAAAAATATTGTA+TGG + chr5_1:10312200-10312219 Msa0716800:intron 15.0%
!! AAAAGGTAAAAATATTGTAT+GGG + chr5_1:10312201-10312220 Msa0716800:intron 15.0%
!!! ACTTTTTTCTTAAATAAAGA+AGG - chr5_1:10312812-10312831 None:intergenic 15.0%
!!! AATTGAAATTTTGTTAATGT+CGG + chr5_1:10313141-10313160 Msa0716800:intron 15.0%
!! ATCTATGAAATATTTGAAAA+TGG + chr5_1:10313675-10313694 Msa0716800:intron 15.0%
!!! AATTTTAATGTTTCACAAAA+TGG - chr5_1:10314547-10314566 None:intergenic 15.0%
!!! CAATTAAATTTGTTATTTAG+CGG - chr5_1:10314706-10314725 None:intergenic 15.0%
!!! TATCATTACTCTATTTTTTA+TGG + chr5_1:10315608-10315627 Msa0716800:intron 15.0%
!!! ATCATTACTCTATTTTTTAT+GGG + chr5_1:10315609-10315628 Msa0716800:intron 15.0%
!!! TAAAATTAAAACATGTGTTT+TGG - chr5_1:10315666-10315685 None:intergenic 15.0%
!! TTAAAGTTATGTTTATACAT+TGG + chr5_1:10316581-10316600 Msa0716800:intron 15.0%
!! TAAACATTTATGATGTATAT+TGG - chr5_1:10317584-10317603 None:intergenic 15.0%
!! TATACATCATAAATGTTTAA+AGG + chr5_1:10317585-10317604 Msa0716800:intron 15.0%
!! TAGTTATTGTTGAAATAAAA+AGG - chr5_1:10318775-10318794 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG + chr5_1:10319721-10319740 Msa0716800:intron 15.0%
!! CAACATTCTAAATATTTATA+TGG + chr5_1:10319753-10319772 Msa0716800:intron 15.0%
!! TTCCTTAAAAAAAAAGTAAT+GGG - chr5_1:10320597-10320616 None:intergenic 15.0%
!! TTTCCTTAAAAAAAAAGTAA+TGG - chr5_1:10320598-10320617 None:intergenic 15.0%
!! TCTAAAAATAAGAAAGTAAT+GGG - chr5_1:10320622-10320641 None:intergenic 15.0%
!!! TTCTAAAAATAAGAAAGTAA+TGG - chr5_1:10320623-10320642 None:intergenic 15.0%
!!! AAAAATATTAATACCCATTT+TGG + chr5_1:10320884-10320903 Msa0716800:intron 15.0%
!! CATATATTAAGATTAAGATA+TGG + chr5_1:10321535-10321554 Msa0716800:intron 15.0%
!!! ATTTTCCATTTATTATAACT+CGG - chr5_1:10321780-10321799 None:intergenic 15.0%
!!! AACAATGATATTTATTCTTT+TGG + chr5_1:10322551-10322570 Msa0716800:intron 15.0%
!! TAATATCATAACAAAAACAT+AGG - chr5_1:10322991-10323010 None:intergenic 15.0%
!! CAAACAAATATAATCAAACA+TGG + chr5_1:10311269-10311288 Msa0716800:five_prime_UTR 20.0%
!!! TACATAAACATCGTATTTTT+TGG - chr5_1:10311538-10311557 None:intergenic 20.0%
!! TCACTTAAAAAGTTTATTTG+TGG + chr5_1:10312044-10312063 Msa0716800:intron 20.0%
!! TTATTTGTGGATTTAAATGA+AGG + chr5_1:10312057-10312076 Msa0716800:intron 20.0%
!!! ATCAAAAGATAAGTTTTTGT+AGG - chr5_1:10312108-10312127 None:intergenic 20.0%
!!! ACTTAGGCTTTAAAAAAATA+TGG - chr5_1:10312321-10312340 None:intergenic 20.0%
!! TAAAGATGTTCATAAGATAT+AGG - chr5_1:10312431-10312450 None:intergenic 20.0%
!!! CAATGTGATTTAAGTTTAAA+TGG + chr5_1:10312457-10312476 Msa0716800:intron 20.0%
!! TTCATATTACTTAAATAGGT+CGG + chr5_1:10312709-10312728 Msa0716800:intron 20.0%
!!! TTAAGCTTATTTAGCTTAAA+AGG - chr5_1:10312777-10312796 None:intergenic 20.0%
!!! CTTTATTTAAGAAAAAAGTC+TGG + chr5_1:10312813-10312832 Msa0716800:intron 20.0%
!! AATTGAAAAAAATACATGTG+CGG + chr5_1:10313020-10313039 Msa0716800:intron 20.0%
!! TAGATAGAAAAAAAAGAAAG+AGG + chr5_1:10313723-10313742 Msa0716800:intron 20.0%
!! AGATAGAAAAAAAAGAAAGA+GGG + chr5_1:10313724-10313743 Msa0716800:intron 20.0%
!! CATAAATAAAGCATATTACT+GGG - chr5_1:10313844-10313863 None:intergenic 20.0%
!! ACATAAATAAAGCATATTAC+TGG - chr5_1:10313845-10313864 None:intergenic 20.0%
!!! TGTTTTTTTAATCATGCATT+TGG + chr5_1:10314009-10314028 Msa0716800:intron 20.0%
!! AAAAAAAAAAAGCAACTGAA+TGG - chr5_1:10314179-10314198 None:intergenic 20.0%
!! CTATAGTCTCTATAAATAAA+AGG - chr5_1:10314310-10314329 None:intergenic 20.0%
!!! CATTTTTTAATAATGTTGCA+CGG - chr5_1:10314510-10314529 None:intergenic 20.0%
!! CGCTAAATAACAAATTTAAT+TGG + chr5_1:10314704-10314723 Msa0716800:intron 20.0%
!! ATCAAAAATTTCTCAAGAAA+AGG - chr5_1:10314736-10314755 None:intergenic 20.0%
!!! AGAATTTTAACGAAAATTCT+TGG + chr5_1:10315034-10315053 Msa0716800:intron 20.0%
!!! GAATTTTAACGAAAATTCTT+GGG + chr5_1:10315035-10315054 Msa0716800:intron 20.0%
!! CAGATCTCTTTAATAAAAAA+GGG - chr5_1:10315084-10315103 None:intergenic 20.0%
!! AACATATAATAATTCCTCAT+AGG + chr5_1:10315227-10315246 Msa0716800:intron 20.0%
!!! AACCATTTTTTAACAACTTT+TGG + chr5_1:10315453-10315472 Msa0716800:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - chr5_1:10315538-10315557 None:intergenic 20.0%
!!! TTGTTTTTCTCACTTTTTAT+TGG - chr5_1:10315551-10315570 None:intergenic 20.0%
!! AATAAAAAGTGAGAAAAACA+AGG + chr5_1:10315550-10315569 Msa0716800:intron 20.0%
!! TTGCATATAAAATTTCAGAA+TGG - chr5_1:10315838-10315857 None:intergenic 20.0%
!! TAATATCTGGAAAAAATATC+TGG + chr5_1:10316217-10316236 Msa0716800:intron 20.0%
!! ATAATTAAAAACAGATGAAG+TGG + chr5_1:10316789-10316808 Msa0716800:intron 20.0%
!!! CAAATCTAAGTATGATTTTA+GGG - chr5_1:10317011-10317030 None:intergenic 20.0%
!!! TCAAATCTAAGTATGATTTT+AGG - chr5_1:10317012-10317031 None:intergenic 20.0%
!! ATATTCTCTATCTATAGATT+TGG + chr5_1:10317106-10317125 Msa0716800:intron 20.0%
!!! TTTTTTTTGGTACAAAAAAG+AGG + chr5_1:10317711-10317730 Msa0716800:intron 20.0%
!!! TTTTTTTGGTACAAAAAAGA+GGG + chr5_1:10317712-10317731 Msa0716800:intron 20.0%
!!! AGTTGTTTAGTTTTTTCTTT+GGG - chr5_1:10317744-10317763 None:intergenic 20.0%
!!! TAGTTGTTTAGTTTTTTCTT+TGG - chr5_1:10317745-10317764 None:intergenic 20.0%
!! TAACTACATATATGTCTATT+CGG - chr5_1:10318183-10318202 None:intergenic 20.0%
!!! ATTTGACCTATTTTAAACAT+GGG - chr5_1:10318338-10318357 None:intergenic 20.0%
!!! TATTTGACCTATTTTAAACA+TGG - chr5_1:10318339-10318358 None:intergenic 20.0%
!! AGATAATAATTAACACTTGA+CGG + chr5_1:10318606-10318625 Msa0716800:intron 20.0%
!! TGATATCTTTAAACTATCTT+AGG - chr5_1:10318811-10318830 None:intergenic 20.0%
!! GTGAAAGAAATTAAAAGAAA+TGG + chr5_1:10318844-10318863 Msa0716800:intron 20.0%
!! TCTTGAATAGATCTTAAAAA+TGG + chr5_1:10319168-10319187 Msa0716800:intron 20.0%
!!! CTCAACTATTTAAAATTTCT+TGG + chr5_1:10319366-10319385 Msa0716800:intron 20.0%
!!! TGTTGATGAAAAATTTTACA+CGG - chr5_1:10319626-10319645 None:intergenic 20.0%
!!! AAAATTTCCTTCAACATTTT+TGG + chr5_1:10319661-10319680 Msa0716800:intron 20.0%
!! TTATATGGATCATTTACTTA+AGG + chr5_1:10319768-10319787 Msa0716800:intron 20.0%
!!! CTATGCTTATTTTTTATTGA+GGG - chr5_1:10320265-10320284 None:intergenic 20.0%
!!! TCTATGCTTATTTTTTATTG+AGG - chr5_1:10320266-10320285 None:intergenic 20.0%
!! AAAAAAATCATGGGTAATTA+GGG - chr5_1:10320394-10320413 None:intergenic 20.0%
!! AAAAAAAATCATGGGTAATT+AGG - chr5_1:10320395-10320414 None:intergenic 20.0%
!! GGAAAAAGAAAAAAAATCAT+GGG - chr5_1:10320403-10320422 None:intergenic 20.0%
!!! TGTCAAACGTTTATTTTTAA+AGG - chr5_1:10320670-10320689 None:intergenic 20.0%
!! AATAAACGTTTGACATAATT+TGG + chr5_1:10320675-10320694 Msa0716800:intron 20.0%
!! TCTTATAAATTCATGTTGTT+TGG - chr5_1:10320947-10320966 None:intergenic 20.0%
!!! ATTGTGAATTGATTTATGTT+TGG - chr5_1:10320993-10321012 None:intergenic 20.0%
!! GATTGATTATCTTCATAATT+TGG + chr5_1:10321142-10321161 Msa0716800:intron 20.0%
!! GGAAAAAAAAAAAAAACATG+AGG + chr5_1:10321364-10321383 Msa0716800:intron 20.0%
!! AAGATTAACAAGTTCATAAA+TGG + chr5_1:10321457-10321476 Msa0716800:intron 20.0%
!! AGATTAACAAGTTCATAAAT+GGG + chr5_1:10321458-10321477 Msa0716800:intron 20.0%
!! TATTAAGATTAAGATATGGT+TGG + chr5_1:10321539-10321558 Msa0716800:intron 20.0%
!! ATCAATACTAAATGAGAAAA+GGG - chr5_1:10321582-10321601 None:intergenic 20.0%
!! AATCAATACTAAATGAGAAA+AGG - chr5_1:10321583-10321602 None:intergenic 20.0%
!!! AAGAAAGGTATAAATAAACA+AGG - chr5_1:10322600-10322619 None:intergenic 20.0%
!! TGATAAATCAATAATGTCAT+AGG - chr5_1:10322623-10322642 None:intergenic 20.0%
!! AATATGAAGATAATTACATG+CGG - chr5_1:10322888-10322907 None:intergenic 20.0%
!! ATTATTCCAAACAATTCTTA+AGG + chr5_1:10323138-10323157 Msa0716800:intron 20.0%
!! TAATTATTGATACATATGAC+AGG + chr5_1:10323201-10323220 Msa0716800:intron 20.0%
! AAAATACGATGTTTATGTAC+CGG + chr5_1:10311539-10311558 Msa0716800:five_prime_UTR 25.0%
!!! ATTTTTTTAAAGCCTAAGTC+TGG + chr5_1:10312322-10312341 Msa0716800:intron 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG - chr5_1:10312419-10312438 None:intergenic 25.0%
!!! CTCTTTTGATAATTAACACA+AGG + chr5_1:10312513-10312532 Msa0716800:intron 25.0%
! AATAAGCTTAAAAAAAGCCT+AGG + chr5_1:10312786-10312805 Msa0716800:intron 25.0%
! ATTACAATACTTCTTGTCTT+TGG + chr5_1:10313255-10313274 Msa0716800:intron 25.0%
! TAAACAAATGTTCTTCGTTT+CGG - chr5_1:10313527-10313546 None:intergenic 25.0%
!!! CAGTTGCTTTTTTTTTTTGA+AGG + chr5_1:10314181-10314200 Msa0716800:intron 25.0%
!!! TAGTCATAGTCTCTATTTTT+TGG - chr5_1:10314344-10314363 None:intergenic 25.0%
!! CAAATTTTCCTGTAGTAATT+TGG - chr5_1:10314377-10314396 None:intergenic 25.0%
! CAAATTACTACAGGAAAATT+TGG + chr5_1:10314375-10314394 Msa0716800:intron 25.0%
! TGATCACGCATATATATTTA+TGG - chr5_1:10314405-10314424 None:intergenic 25.0%
! AATGGTGTGTAATTAAGTAA+AGG - chr5_1:10314669-10314688 None:intergenic 25.0%
! GACTAATTAATTAGTGTCAA+AGG + chr5_1:10314876-10314895 Msa0716800:intron 25.0%
!! CTATAAATAGATGTGCATTT+TGG + chr5_1:10314935-10314954 Msa0716800:intron 25.0%
! GCAGATCTCTTTAATAAAAA+AGG - chr5_1:10315085-10315104 None:intergenic 25.0%
! GTAAAATTGTTAACGAAGTT+TGG - chr5_1:10315135-10315154 None:intergenic 25.0%
! ATATGTTGCTCACAAAAATA+AGG - chr5_1:10315268-10315287 None:intergenic 25.0%
!! AAATTACCTGCGAAAATTTT+GGG - chr5_1:10315377-10315396 None:intergenic 25.0%
!! AAAATTACCTGCGAAAATTT+TGG - chr5_1:10315378-10315397 None:intergenic 25.0%
! GTCCAAAAGTTGTTAAAAAA+TGG - chr5_1:10315458-10315477 None:intergenic 25.0%
!! TTTTATATGCAATTGATCTG+TGG + chr5_1:10315846-10315865 Msa0716800:intron 25.0%
! AGTGTTTGATACATATTTAC+AGG + chr5_1:10315873-10315892 Msa0716800:intron 25.0%
! AACATTACAAGAGATAAAGA+AGG + chr5_1:10315913-10315932 Msa0716800:five_prime_UTR 25.0%
! TCATCAAGCATAATATGAAT+TGG - chr5_1:10316032-10316051 None:intergenic 25.0%
! TTGTTTGTAAGTTATTGTTG+TGG + chr5_1:10316148-10316167 Msa0716800:intron 25.0%
!!! ATAGCGTTTATATTAGCTTT+TGG - chr5_1:10316182-10316201 None:intergenic 25.0%
! CAAATCTGCAACATAATTAT+AGG - chr5_1:10316440-10316459 None:intergenic 25.0%
! ATACATTGGTATAAACATTG+TGG + chr5_1:10316595-10316614 Msa0716800:intron 25.0%
! TTTATTACTTGCATACGATT+TGG - chr5_1:10316700-10316719 None:intergenic 25.0%
! TGATTTGAGAAAGTAGAATA+TGG + chr5_1:10316895-10316914 Msa0716800:intron 25.0%
! ATTGAATCCAACAAATAAGA+AGG + chr5_1:10317198-10317217 Msa0716800:intron 25.0%
! TTGAATCCAACAAATAAGAA+GGG + chr5_1:10317199-10317218 Msa0716800:intron 25.0%
! CAACTAAACTTCTTTGATTA+GGG - chr5_1:10317237-10317256 None:intergenic 25.0%
! TTAATCATTCAGAAAGCTAA+TGG - chr5_1:10317374-10317393 None:intergenic 25.0%
! TTTATACTGCATCATTACTT+AGG + chr5_1:10317415-10317434 Msa0716800:intron 25.0%
! TTATACTGCATCATTACTTA+GGG + chr5_1:10317416-10317435 Msa0716800:intron 25.0%
!! TCTCTATTTTCCTTTAAACA+TGG - chr5_1:10317523-10317542 None:intergenic 25.0%
! TTCAAAATTGCTTATTGACA+TGG - chr5_1:10318020-10318039 None:intergenic 25.0%
! AACTACATATATGTCTATTC+GGG - chr5_1:10318182-10318201 None:intergenic 25.0%
!! AGAGACGATTTTACATTAAA+AGG - chr5_1:10318280-10318299 None:intergenic 25.0%
!!! TAGCTAGTTTTCTCTAAATA+TGG + chr5_1:10318743-10318762 Msa0716800:intron 25.0%
! ATTGTTGAAATAAAAAGGAG+AGG - chr5_1:10318770-10318789 None:intergenic 25.0%
! ATCTTTAAACTATCTTAGGT+GGG - chr5_1:10318807-10318826 None:intergenic 25.0%
! TATCTTTAAACTATCTTAGG+TGG - chr5_1:10318808-10318827 None:intergenic 25.0%
! TCCATAAACCTTAATTTAAC+CGG + chr5_1:10319207-10319226 Msa0716800:intron 25.0%
!! TATGTTTACCGGTTAAATTA+AGG - chr5_1:10319218-10319237 None:intergenic 25.0%
! TTCATTAAGGATATGTTTAC+CGG - chr5_1:10319229-10319248 None:intergenic 25.0%
! ATTAAATGAGAAATGCTAAC+CGG - chr5_1:10319264-10319283 None:intergenic 25.0%
!!! GGTGATTGTTTTTATAAGTA+GGG - chr5_1:10319397-10319416 None:intergenic 25.0%
!!! AGGTGATTGTTTTTATAAGT+AGG - chr5_1:10319398-10319417 None:intergenic 25.0%
!!! AGCTAGATTTTTTTAGAGAT+GGG - chr5_1:10319479-10319498 None:intergenic 25.0%
!!! AAGCTAGATTTTTTTAGAGA+TGG - chr5_1:10319480-10319499 None:intergenic 25.0%
! TAGCTTACTTGTAAATTGTA+AGG + chr5_1:10319494-10319513 Msa0716800:intron 25.0%
!!! GTTGAAGGAAATTTTTTACA+GGG - chr5_1:10319656-10319675 None:intergenic 25.0%
!!! TGTTGAAGGAAATTTTTTAC+AGG - chr5_1:10319657-10319676 None:intergenic 25.0%
! TTAAGAACCAAAAATGTTGA+AGG - chr5_1:10319671-10319690 None:intergenic 25.0%
!!! TTTGGTTCTTAAAATGCTAA+AGG + chr5_1:10319679-10319698 Msa0716800:intron 25.0%
!! TTGGTTCTTAAAATGCTAAA+GGG + chr5_1:10319680-10319699 Msa0716800:intron 25.0%
!! AGTTTGAAATGCAATTTAAG+AGG - chr5_1:10319933-10319952 None:intergenic 25.0%
!!! AGCTTTTTTTACATCTTGTT+TGG + chr5_1:10320049-10320068 Msa0716800:intron 25.0%
!! AATATCAAAGCTTTTTAGAC+AGG + chr5_1:10320130-10320149 Msa0716800:intron 25.0%
! GTATATTGTGTGTTAAAATC+AGG + chr5_1:10320292-10320311 Msa0716800:intron 25.0%
! GGGAAAAAGAAAAAAAATCA+TGG - chr5_1:10320404-10320423 None:intergenic 25.0%
!!! AAAAAAAAGTAATGGGCTTT+TGG - chr5_1:10320590-10320609 None:intergenic 25.0%
!!! AGCCCATTACTTTTTTTTTA+AGG + chr5_1:10320592-10320611 Msa0716800:intron 25.0%
! GAATGCATAATTACCAAAAT+GGG - chr5_1:10320900-10320919 None:intergenic 25.0%
! TGAATGCATAATTACCAAAA+TGG - chr5_1:10320901-10320920 None:intergenic 25.0%
! AAATACTAACAAGTGTTCTT+AGG + chr5_1:10321217-10321236 Msa0716800:intron 25.0%
! TGATCTTGTATACTAAAGAT+TGG - chr5_1:10321328-10321347 None:intergenic 25.0%
! ATACTTCGAGTGAATATAAT+GGG - chr5_1:10321428-10321447 None:intergenic 25.0%
! ACTAATCAATGACCAAATAA+TGG - chr5_1:10321908-10321927 None:intergenic 25.0%
!! TTATTTGGTCATTGATTAGT+TGG + chr5_1:10321908-10321927 Msa0716800:intron 25.0%
! TTGGTGTATACAAAAACATT+TGG + chr5_1:10322472-10322491 Msa0716800:intron 25.0%
! TATGCTTAATGACTTTCTTA+AGG + chr5_1:10322506-10322525 Msa0716800:intron 25.0%
!! TAATTACATGCGGTAATTTT+GGG - chr5_1:10322878-10322897 None:intergenic 25.0%
!! ATAATTACATGCGGTAATTT+TGG - chr5_1:10322879-10322898 None:intergenic 25.0%
! GTAATTATCTTCATATTTCG+AGG + chr5_1:10322891-10322910 Msa0716800:intron 25.0%
!! CATAACAAAAACATAGGTTT+TGG - chr5_1:10322985-10323004 None:intergenic 25.0%
!! AGATGAAATTTTTAAACCAG+AGG + chr5_1:10323069-10323088 Msa0716800:CDS 25.0%
! GATAAACCTTAAGAATTGTT+TGG - chr5_1:10323147-10323166 None:intergenic 25.0%
!! TTTGAAGTAATAAAGAATGC+TGG + chr5_1:10323245-10323264 Msa0716800:CDS 25.0%
!! ATTGTTTTCATGAAGCATAA+TGG - chr5_1:10323333-10323352 None:intergenic 25.0%
! ACATATTCATAGATGTGAAT+TGG - chr5_1:10323360-10323379 None:intergenic 25.0%
! TCACATCTATGAATATGTTA+AGG + chr5_1:10323362-10323381 Msa0716800:exon 25.0%
! CACATCTATGAATATGTTAA+GGG + chr5_1:10323363-10323382 Msa0716800:exon 25.0%
! GTGTTATGCAAATTTCAATA+AGG + chr5_1:10323459-10323478 Msa0716800:three_prime_UTR 25.0%
ATAATCAAACATGGTGAACA+CGG + chr5_1:10311278-10311297 Msa0716800:five_prime_UTR 30.0%
! AGGTACAGTTATGAGATTTT+GGG + chr5_1:10311377-10311396 Msa0716800:five_prime_UTR 30.0%
!!! TTTTAGTTTGGACTTGGAAA+TGG - chr5_1:10311415-10311434 None:intergenic 30.0%
!!! CATCGTATTTTTTGGCTAAA+GGG - chr5_1:10311530-10311549 None:intergenic 30.0%
!!! ACATCGTATTTTTTGGCTAA+AGG - chr5_1:10311531-10311550 None:intergenic 30.0%
AAAGGAGTCTATGATTAGTA+AGG + chr5_1:10311773-10311792 Msa0716800:five_prime_UTR 30.0%
CGACATGATTATAACAAATG+CGG + chr5_1:10312244-10312263 Msa0716800:intron 30.0%
ATGATTATAACAAATGCGGA+TGG + chr5_1:10312248-10312267 Msa0716800:intron 30.0%
TGATTATAACAAATGCGGAT+GGG + chr5_1:10312249-10312268 Msa0716800:intron 30.0%
TTCTTAAATAAAGAAGGCCT+AGG - chr5_1:10312806-10312825 None:intergenic 30.0%
ATGAAATCTAGTCGTATGTA+GGG - chr5_1:10312897-10312916 None:intergenic 30.0%
TACATACGACTAGATTTCAT+GGG + chr5_1:10312897-10312916 Msa0716800:intron 30.0%
AATTCATCTGTTAGTCAACA+TGG - chr5_1:10313077-10313096 None:intergenic 30.0%
TGACTAACAGATGAATTTGA+CGG + chr5_1:10313080-10313099 Msa0716800:intron 30.0%
! AAATTTTGTTAATGTCGGAG+AGG + chr5_1:10313146-10313165 Msa0716800:intron 30.0%
ACGAAACTTACAATTTCAGA+GGG + chr5_1:10313175-10313194 Msa0716800:intron 30.0%
GCAATTCACTTAGTGTAAAT+AGG - chr5_1:10313203-10313222 None:intergenic 30.0%
GAAGCTTGAAAATAAACACA+TGG + chr5_1:10313367-10313386 Msa0716800:intron 30.0%
TGAAAATAAACACATGGTAC+AGG + chr5_1:10313373-10313392 Msa0716800:intron 30.0%
!! AAATTTTGATCCATAGAGTG+AGG + chr5_1:10313482-10313501 Msa0716800:intron 30.0%
!! AATTTTGATCCATAGAGTGA+GGG + chr5_1:10313483-10313502 Msa0716800:intron 30.0%
GTCGAAATTAAAAAGCAACA+AGG - chr5_1:10313982-10314001 None:intergenic 30.0%
!!! CTAGGTACATGTGATTTTTT+CGG - chr5_1:10314094-10314113 None:intergenic 30.0%
! GATTTTCAAAAGCAACTGAA+TGG - chr5_1:10314208-10314227 None:intergenic 30.0%
!!! TCATAGTCTCTATTTTTTGG+TGG - chr5_1:10314341-10314360 None:intergenic 30.0%
! TTTTCCTGTAGTAATTTGGA+CGG - chr5_1:10314373-10314392 None:intergenic 30.0%
TTTCACAAAATGGTTACACT+AGG - chr5_1:10314537-10314556 None:intergenic 30.0%
! TGTTATTTAGCGGAAATCAA+GGG - chr5_1:10314696-10314715 None:intergenic 30.0%
!! TTGTTATTTAGCGGAAATCA+AGG - chr5_1:10314697-10314716 None:intergenic 30.0%
CACTAATTAATTAGTCACAG+TGG - chr5_1:10314872-10314891 None:intergenic 30.0%
! AAATAGATGTGCATTTTGGA+AGG + chr5_1:10314939-10314958 Msa0716800:intron 30.0%
AAGTGGAAGTGAAATAAATG+CGG - chr5_1:10315173-10315192 None:intergenic 30.0%
!!! CGGTTTTTTTTATACCTATG+AGG - chr5_1:10315244-10315263 None:intergenic 30.0%
AGCAACATATCATTAATTGC+AGG + chr5_1:10315278-10315297 Msa0716800:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5_1:10315525-10315544 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5_1:10315576-10315595 Msa0716800:intron 30.0%
ATACATATTTACAGGAAGCT+GGG + chr5_1:10315881-10315900 Msa0716800:intron 30.0%
GCATATTCATTGATATGAAC+TGG - chr5_1:10316068-10316087 None:intergenic 30.0%
CATATCAATGAATATGCCAA+CGG + chr5_1:10316071-10316090 Msa0716800:CDS 30.0%
! TTGTTGTTCAACTAGGTAAT+TGG + chr5_1:10316746-10316765 Msa0716800:intron 30.0%
GTCTTATCCAATGCAAAATT+AGG + chr5_1:10316829-10316848 Msa0716800:intron 30.0%
! ACAACAACCTAATTTTGCAT+TGG - chr5_1:10316839-10316858 None:intergenic 30.0%
AAACTTCCACTTATACATCA+CGG - chr5_1:10316923-10316942 None:intergenic 30.0%
AATTGTAACTGGTTGAATTG+AGG - chr5_1:10316960-10316979 None:intergenic 30.0%
AATTCAACCAGTTACAATTG+CGG + chr5_1:10316961-10316980 Msa0716800:intron 30.0%
CTAAGCAATTTAGTATTGTC+TGG + chr5_1:10317054-10317073 Msa0716800:intron 30.0%
CAATTTAGTATTGTCTGGTT+CGG + chr5_1:10317059-10317078 Msa0716800:intron 30.0%
CTATAGATTTGGCATAGAAA+TGG + chr5_1:10317117-10317136 Msa0716800:intron 30.0%
GCAACTAAACTTCTTTGATT+AGG - chr5_1:10317238-10317257 None:intergenic 30.0%
TATACCATAGAGAAAACAAG+AGG + chr5_1:10317295-10317314 Msa0716800:intron 30.0%
TATACTGCATCATTACTTAG+GGG + chr5_1:10317417-10317436 Msa0716800:intron 30.0%
!!! TGTTTGCTTGTTTTTCAAGT+TGG - chr5_1:10317482-10317501 None:intergenic 30.0%
! GGAAAATAGAGCATTTATTG+AGG + chr5_1:10317606-10317625 Msa0716800:intron 30.0%
!! TAGTAGAAGTGCGATTTTAT+TGG + chr5_1:10317664-10317683 Msa0716800:intron 30.0%
! CTCCTATTTGATGATATTTC+CGG - chr5_1:10317794-10317813 None:intergenic 30.0%
! GAAATCTTTTAGATCGTAGT+TGG - chr5_1:10317943-10317962 None:intergenic 30.0%
AGAAATGTGGGGTTTATATT+CGG - chr5_1:10318095-10318114 None:intergenic 30.0%
TGTCAAAATAATGAACGACA+TGG + chr5_1:10318648-10318667 Msa0716800:intron 30.0%
AGAAAACTAGCTAAATCTTG+AGG - chr5_1:10318736-10318755 None:intergenic 30.0%
ACCGGTTAAATTAAGGTTTA+TGG - chr5_1:10319211-10319230 None:intergenic 30.0%
ACATATCCTTAATGAATGTC+CGG + chr5_1:10319233-10319252 Msa0716800:intron 30.0%
AACAATCACCTCTATATACA+CGG + chr5_1:10319407-10319426 Msa0716800:intron 30.0%
! TTTACACGGACTAAAAATGT+TGG - chr5_1:10319612-10319631 None:intergenic 30.0%
!! TTTTTCAGATTCAATAGAGC+TGG - chr5_1:10319880-10319899 None:intergenic 30.0%
AATCTGAAAAATGCGATTCA+AGG + chr5_1:10319889-10319908 Msa0716800:intron 30.0%
TGAAATGCAATTTAAGAGGA+AGG - chr5_1:10319929-10319948 None:intergenic 30.0%
! TTTACATCTTGTTTGGTACT+AGG + chr5_1:10320056-10320075 Msa0716800:intron 30.0%
GATACGATTTATAACTCTGT+GGG - chr5_1:10320424-10320443 None:intergenic 30.0%
! TTGGTTTCACTGATCAATTT+TGG + chr5_1:10320475-10320494 Msa0716800:intron 30.0%
!!! ACTGATCAATTTTGGTTTCA+CGG + chr5_1:10320483-10320502 Msa0716800:intron 30.0%
TTAGAGATGAGGTTGAAATT+GGG + chr5_1:10320562-10320581 Msa0716800:intron 30.0%
CTAATGACTATGTGTATGTT+TGG - chr5_1:10321086-10321105 None:intergenic 30.0%
! CAATATTCCAAAATTTTCCC+AGG + chr5_1:10321118-10321137 Msa0716800:intron 30.0%
ATGAAGATAATCAATCACCT+GGG - chr5_1:10321138-10321157 None:intergenic 30.0%
TATGAAGATAATCAATCACC+TGG - chr5_1:10321139-10321158 None:intergenic 30.0%
GATCATGCATGAATTTAAAC+AGG + chr5_1:10321343-10321362 Msa0716800:intron 30.0%
GATACTTCGAGTGAATATAA+TGG - chr5_1:10321429-10321448 None:intergenic 30.0%
ATACTAAATGAGAAAAGGGT+GGG - chr5_1:10321578-10321597 None:intergenic 30.0%
AATACTAAATGAGAAAAGGG+TGG - chr5_1:10321579-10321598 None:intergenic 30.0%
ATTGGTCATTTAACAGTAGA+TGG - chr5_1:10321625-10321644 None:intergenic 30.0%
!! TTATAACTCGGTTTGCTAAA+AGG - chr5_1:10321768-10321787 None:intergenic 30.0%
GCAAACCGAGTTATAATAAA+TGG + chr5_1:10321772-10321791 Msa0716800:intron 30.0%
AATGGAAAATGCTAGTACTA+AGG + chr5_1:10321790-10321809 Msa0716800:intron 30.0%
AGAGAAAAACATGTTGAACA+CGG + chr5_1:10321879-10321898 Msa0716800:intron 30.0%
!! TTTTAGCTAATGCCATGATT+TGG - chr5_1:10322116-10322135 None:intergenic 30.0%
! GTTCCAGACTTAATTTTCTT+CGG + chr5_1:10322150-10322169 Msa0716800:intron 30.0%
TTATTGCCATCTTCTATTGA+AGG + chr5_1:10322429-10322448 Msa0716800:intron 30.0%
AAGTCATTAAGCATACGATT+GGG - chr5_1:10322501-10322520 None:intergenic 30.0%
AAAGTCATTAAGCATACGAT+TGG - chr5_1:10322502-10322521 None:intergenic 30.0%
CAATAATGTCATAGGAAGAA+AGG - chr5_1:10322615-10322634 None:intergenic 30.0%
ACATACTTGATGAGCATTAA+TGG + chr5_1:10322680-10322699 Msa0716800:intron 30.0%
!!! AACATAGGTTTTGGAAGAAT+TGG - chr5_1:10322976-10322995 None:intergenic 30.0%
! TGCAGAGAATACATCTTTTA+TGG + chr5_1:10323038-10323057 Msa0716800:intron 30.0%
! GCAGAGAATACATCTTTTAT+GGG + chr5_1:10323039-10323058 Msa0716800:intron 30.0%
! CAGAGAATACATCTTTTATG+GGG + chr5_1:10323040-10323059 Msa0716800:intron 30.0%
TTATTGATACATATGACAGG+AGG + chr5_1:10323204-10323223 Msa0716800:intron 30.0%
AATAAAGAATGCTGGTCATT+TGG + chr5_1:10323253-10323272 Msa0716800:CDS 30.0%
AACGACCATGTATTTACAAT+AGG + chr5_1:10323285-10323304 Msa0716800:CDS 30.0%
TGGAAGAAAGAAACTTCTTT+AGG - chr5_1:10323313-10323332 None:intergenic 30.0%
TTCAATAAGGCATGTTATGT+TGG + chr5_1:10323472-10323491 Msa0716800:three_prime_UTR 30.0%
! TAATTTGGACACTGGTTAGT+TGG + chr5_1:10311307-10311326 Msa0716800:five_prime_UTR 35.0%
! AATTTGGACACTGGTTAGTT+GGG + chr5_1:10311308-10311327 Msa0716800:five_prime_UTR 35.0%
TACACAGTAGAGATAAAACC+AGG + chr5_1:10311357-10311376 Msa0716800:five_prime_UTR 35.0%
CAAAATCTCATAACTGTACC+TGG - chr5_1:10311378-10311397 None:intergenic 35.0%
! CAGGTACAGTTATGAGATTT+TGG + chr5_1:10311376-10311395 Msa0716800:five_prime_UTR 35.0%
!!! TTTGGGTTTTAGTTTGGACT+TGG - chr5_1:10311421-10311440 None:intergenic 35.0%
!!! TATGGGTTTGGGTTTTAGTT+TGG - chr5_1:10311427-10311446 None:intergenic 35.0%
!! TTTTGGCTAAAGGGTTGATT+TGG - chr5_1:10311521-10311540 None:intergenic 35.0%
! GTACCGGACTTAATTTTCTT+TGG + chr5_1:10311555-10311574 Msa0716800:five_prime_UTR 35.0%
CCACCAAAGAAAATTAAGTC+CGG - chr5_1:10311561-10311580 None:intergenic 35.0%
AAAATGGCTGAGATGTATAG+TGG + chr5_1:10311708-10311727 Msa0716800:five_prime_UTR 35.0%
AAATGGCTGAGATGTATAGT+GGG + chr5_1:10311709-10311728 Msa0716800:five_prime_UTR 35.0%
TTAATGCCATCTTCTGTTGA+AGG + chr5_1:10311834-10311853 Msa0716800:five_prime_UTR 35.0%
TAAGAAAGTCCTTGATGAGA+CGG - chr5_1:10311911-10311930 None:intergenic 35.0%
TCTCATCAAGGACTTTCTTA+AGG + chr5_1:10311911-10311930 Msa0716800:five_prime_UTR 35.0%
TGTGGATTTAAATGAAGGAC+CGG + chr5_1:10312062-10312081 Msa0716800:intron 35.0%
GAACTAATCATTGAGCTATC+CGG - chr5_1:10312084-10312103 None:intergenic 35.0%
CTAAAAAGTAGGTCTATGAC+AGG - chr5_1:10312355-10312374 None:intergenic 35.0%
!!! CTGTCATAGACCTACTTTTT+AGG + chr5_1:10312353-10312372 Msa0716800:intron 35.0%
AAAAGCCTCTTAAGCCTATT+AGG - chr5_1:10312735-10312754 None:intergenic 35.0%
CATGAAATCTAGTCGTATGT+AGG - chr5_1:10312898-10312917 None:intergenic 35.0%
CTACATACGACTAGATTTCA+TGG + chr5_1:10312896-10312915 Msa0716800:intron 35.0%
ACATACGACTAGATTTCATG+GGG + chr5_1:10312898-10312917 Msa0716800:intron 35.0%
TAACAGATGAATTTGACGGA+GGG + chr5_1:10313084-10313103 Msa0716800:intron 35.0%
GCTTAACGTTATGCAATTTC+TGG + chr5_1:10313114-10313133 Msa0716800:intron 35.0%
GACGAAACTTACAATTTCAG+AGG + chr5_1:10313174-10313193 Msa0716800:intron 35.0%
AACACTGTTTGGCTATTGAA+AGG - chr5_1:10313307-10313326 None:intergenic 35.0%
ATGCATGCTATAACACTGTT+TGG - chr5_1:10313318-10313337 None:intergenic 35.0%
TTATAGCATGCATGCTGTAT+AGG + chr5_1:10313325-10313344 Msa0716800:intron 35.0%
AACAAGACATACGACTAATC+AGG + chr5_1:10313757-10313776 Msa0716800:intron 35.0%
ACAAGACATACGACTAATCA+GGG + chr5_1:10313758-10313777 Msa0716800:intron 35.0%
GGCATAAATTTGAAAACCCA+GGG - chr5_1:10313823-10313842 None:intergenic 35.0%
GGTGCAACATTAAAACTTCA+GGG - chr5_1:10313876-10313895 None:intergenic 35.0%
AGGTGCAACATTAAAACTTC+AGG - chr5_1:10313877-10313896 None:intergenic 35.0%
GAATGAGAGAAGAACACATT+AGG - chr5_1:10313957-10313976 None:intergenic 35.0%
TCTAAGTCATGAGTTCAAGA+AGG - chr5_1:10314124-10314143 None:intergenic 35.0%
GTCCGAAGAGTAGATATTAT+TGG + chr5_1:10315109-10315128 Msa0716800:intron 35.0%
GGCCAATAATATCTACTCTT+CGG - chr5_1:10315114-10315133 None:intergenic 35.0%
ACTTCCACTTAATCTGACTA+TGG + chr5_1:10315183-10315202 Msa0716800:intron 35.0%
TTCTCCATAGTCAGATTAAG+TGG - chr5_1:10315190-10315209 None:intergenic 35.0%
GTTGCTCACAAAAATAAGGT+CGG - chr5_1:10315264-10315283 None:intergenic 35.0%
GTCTTTGTAGCTAATGACTA+AGG - chr5_1:10315346-10315365 None:intergenic 35.0%
!!! GTGTTTTGGAACATAGAACA+TGG - chr5_1:10315652-10315671 None:intergenic 35.0%
GATACATATTTACAGGAAGC+TGG + chr5_1:10315880-10315899 Msa0716800:intron 35.0%
TTACAAGAGATAAAGAAGGC+TGG + chr5_1:10315917-10315936 Msa0716800:five_prime_UTR 35.0%
AGCGACCATGTGTTTATAAT+AGG + chr5_1:10315957-10315976 Msa0716800:five_prime_UTR 35.0%
AGGCACCTATTATAAACACA+TGG - chr5_1:10315965-10315984 None:intergenic 35.0%
CCTTAAGCAATTTCTTGCTT+CGG + chr5_1:10315982-10316001 Msa0716800:five_prime_UTR 35.0%
CTTACAAACAAGCGCTTAAT+TGG - chr5_1:10316139-10316158 None:intergenic 35.0%
GTTTAACATTACCTCCATGT+TGG - chr5_1:10316628-10316647 None:intergenic 35.0%
! ACAGAGATTGTTGTTCAACT+AGG + chr5_1:10316739-10316758 Msa0716800:intron 35.0%
TTGTTCAACTAGGTAATTGG+TGG + chr5_1:10316749-10316768 Msa0716800:intron 35.0%
!!! GGGTTTTGACTCTATCTTAA+GGG - chr5_1:10316991-10317010 None:intergenic 35.0%
!!! AGGGTTTTGACTCTATCTTA+AGG - chr5_1:10316992-10317011 None:intergenic 35.0%
! GATGAACCCTTCTTATTTGT+TGG - chr5_1:10317208-10317227 None:intergenic 35.0%
!!! TCATCCTCTTGTTTTCTCTA+TGG - chr5_1:10317302-10317321 None:intergenic 35.0%
TTCAGAAAGCTAATGGTACA+AGG - chr5_1:10317367-10317386 None:intergenic 35.0%
!!! GCTTGTTTTTCAAGTTGGAT+CGG - chr5_1:10317477-10317496 None:intergenic 35.0%
TTTCCTTTAAACATGGCTTG+CGG - chr5_1:10317516-10317535 None:intergenic 35.0%
ACAACTAAACGAACATTCCT+AGG + chr5_1:10317758-10317777 Msa0716800:intron 35.0%
CTCCGGAAATATCATCAAAT+AGG + chr5_1:10317789-10317808 Msa0716800:intron 35.0%
AATCCCAAGAATCCATGATA+AGG + chr5_1:10317852-10317871 Msa0716800:intron 35.0%
ATTCATCATACCTAGTGAGA+GGG - chr5_1:10317911-10317930 None:intergenic 35.0%
CAAACAACTGCAAGACTAAT+GGG - chr5_1:10317994-10318013 None:intergenic 35.0%
ACAAACAACTGCAAGACTAA+TGG - chr5_1:10317995-10318014 None:intergenic 35.0%
GTTTCATATCTTTGTGTGGA+AGG - chr5_1:10318046-10318065 None:intergenic 35.0%
TGGAGTTTCATATCTTTGTG+TGG - chr5_1:10318050-10318069 None:intergenic 35.0%
AAATGTGGGGTTTATATTCG+GGG - chr5_1:10318093-10318112 None:intergenic 35.0%
GAAATGTGGGGTTTATATTC+GGG - chr5_1:10318094-10318113 None:intergenic 35.0%
! GCTTGACCCATGTTTAAAAT+AGG + chr5_1:10318329-10318348 Msa0716800:intron 35.0%
!!! GACATGTATTTTGAAACGGA+TGG - chr5_1:10318376-10318395 None:intergenic 35.0%
!! CCACGACATGTATTTTGAAA+CGG - chr5_1:10318380-10318399 None:intergenic 35.0%
GACGGTATATAAATCCTTGA+CGG + chr5_1:10318624-10318643 Msa0716800:intron 35.0%
!!! CATTATTTTGACAACCGTCA+AGG - chr5_1:10318641-10318660 None:intergenic 35.0%
TGCTTCTTACATGAACAGAA+AGG + chr5_1:10318689-10318708 Msa0716800:intron 35.0%
TGTTGTTCACACATTTGAGA+AGG + chr5_1:10318936-10318955 Msa0716800:intron 35.0%
TGTTGTTGACACATTGCATA+AGG - chr5_1:10319140-10319159 None:intergenic 35.0%
CATATCCTTAATGAATGTCC+GGG + chr5_1:10319234-10319253 Msa0716800:intron 35.0%
ATATCCTTAATGAATGTCCG+GGG + chr5_1:10319235-10319254 Msa0716800:intron 35.0%
TTCGAGAACTCACACATAAA+TGG - chr5_1:10319317-10319336 None:intergenic 35.0%
!! ATATTAGGAGGTGCCTAAAT+AGG + chr5_1:10319447-10319466 Msa0716800:intron 35.0%
!! TATTAGGAGGTGCCTAAATA+GGG + chr5_1:10319448-10319467 Msa0716800:intron 35.0%
ATGTCGTGAAAAAAAGCGAA+TGG + chr5_1:10319816-10319835 Msa0716800:intron 35.0%
TGTCGTGAAAAAAAGCGAAT+GGG + chr5_1:10319817-10319836 Msa0716800:intron 35.0%
AGATTCAATAGAGCTGGAAA+AGG - chr5_1:10319874-10319893 None:intergenic 35.0%
ACAATCAACCTGCATATTGT+AGG - chr5_1:10319962-10319981 None:intergenic 35.0%
!! AGGTTGATTGTTTTCGTAGA+AGG + chr5_1:10319971-10319990 Msa0716800:intron 35.0%
! TGTTTTCGTAGAAGGATGAA+TGG + chr5_1:10319979-10319998 Msa0716800:intron 35.0%
! GGAAATGTTTGAAGTAGAAG+AGG + chr5_1:10320077-10320096 Msa0716800:intron 35.0%
!! GGTTGATAGAATTCATGAGT+GGG - chr5_1:10320157-10320176 None:intergenic 35.0%
GGATACGATTTATAACTCTG+TGG - chr5_1:10320425-10320444 None:intergenic 35.0%
AACCAAAATCATCACTGTCT+GGG - chr5_1:10320461-10320480 None:intergenic 35.0%
AAACCAAAATCATCACTGTC+TGG - chr5_1:10320462-10320481 None:intergenic 35.0%
GTTAGAGATGAGGTTGAAAT+TGG + chr5_1:10320561-10320580 Msa0716800:intron 35.0%
! TTCATGTTGTTTGGATAGCT+TGG - chr5_1:10320938-10320957 None:intergenic 35.0%
!! TATGTGTATGTTTGGTTCTG+CGG - chr5_1:10321078-10321097 None:intergenic 35.0%
! TCAATCACCTGGGAAAATTT+TGG - chr5_1:10321128-10321147 None:intergenic 35.0%
! GAAATAGAGGAAGGAAGTAT+TGG - chr5_1:10321280-10321299 None:intergenic 35.0%
ACATTCCTAGAGAGAAATAG+AGG - chr5_1:10321293-10321312 None:intergenic 35.0%
AGGAAGTCATGAATACGATT+GGG - chr5_1:10321748-10321767 None:intergenic 35.0%
AAGGAAGTCATGAATACGAT+TGG - chr5_1:10321749-10321768 None:intergenic 35.0%
! GATTAGTTGGACAATGAAGA+TGG + chr5_1:10321921-10321940 Msa0716800:intron 35.0%
AGGTACAGTTATCAGATTCT+GGG + chr5_1:10321978-10321997 Msa0716800:CDS 35.0%
AGGATTAAGGAAACTCAATG+TGG + chr5_1:10322233-10322252 Msa0716800:CDS 35.0%
TTTGGCTATGACAGAATCTA+TGG + chr5_1:10322359-10322378 Msa0716800:CDS 35.0%
ATGACAGAATCTATGGTTAG+TGG + chr5_1:10322366-10322385 Msa0716800:intron 35.0%
!! AGTGGAGTATTGAAAGATGT+TGG + chr5_1:10322384-10322403 Msa0716800:intron 35.0%
!! GTGGAGTATTGAAAGATGTT+GGG + chr5_1:10322385-10322404 Msa0716800:intron 35.0%
CTCAATCCTTCAATAGAAGA+TGG - chr5_1:10322438-10322457 None:intergenic 35.0%
CATCTTCTATTGAAGGATTG+AGG + chr5_1:10322436-10322455 Msa0716800:intron 35.0%
!! ACAAGGTGTTGAATAAGCAT+TGG - chr5_1:10322583-10322602 None:intergenic 35.0%
CTATTAGAGGCTACAATCAA+TGG + chr5_1:10322834-10322853 Msa0716800:CDS 35.0%
AAAGATGTATTCTCTGCAGA+GGG - chr5_1:10323036-10323055 None:intergenic 35.0%
AAAAGATGTATTCTCTGCAG+AGG - chr5_1:10323037-10323056 None:intergenic 35.0%
! TTCATATTTAGAGCAACCTC+TGG - chr5_1:10323088-10323107 None:intergenic 35.0%
AGGCACCTATTGTAAATACA+TGG - chr5_1:10323293-10323312 None:intergenic 35.0%
! GAATATGTTAAGGGTGTGTT+TGG + chr5_1:10323372-10323391 Msa0716800:exon 35.0%
TGAACACGGTGAACGTAATT+TGG + chr5_1:10311292-10311311 Msa0716800:five_prime_UTR 40.0%
! GACTTGGAAATGGTGTTAGA+AGG - chr5_1:10311405-10311424 None:intergenic 40.0%
! CCGGACTTAATTTTCTTTGG+TGG + chr5_1:10311558-10311577 Msa0716800:five_prime_UTR 40.0%
GTTGTGGTTGGATTCAGTTA+TGG + chr5_1:10311669-10311688 Msa0716800:five_prime_UTR 40.0%
! TGGATTCAGTTATGGTGGAA+TGG + chr5_1:10311677-10311696 Msa0716800:five_prime_UTR 40.0%
! ATTCAGTTATGGTGGAATGG+TGG + chr5_1:10311680-10311699 Msa0716800:five_prime_UTR 40.0%
! TGGAATGGTGGCGTTTAAAA+TGG + chr5_1:10311692-10311711 Msa0716800:five_prime_UTR 40.0%
TGCTGGATTCTCTTCTTGTT+CGG + chr5_1:10311806-10311825 Msa0716800:five_prime_UTR 40.0%
TTCACTCCTTCAACAGAAGA+TGG - chr5_1:10311843-10311862 None:intergenic 40.0%
GTGAAGACACTTCTTTCTGT+TGG + chr5_1:10311858-10311877 Msa0716800:five_prime_UTR 40.0%
TAACAAATGCGGATGGGAAT+AGG + chr5_1:10312255-10312274 Msa0716800:intron 40.0%
AAATATGGCAGACCAGACTT+AGG - chr5_1:10312306-10312325 None:intergenic 40.0%
CTTAAATAGGTCGGCCTAAT+AGG + chr5_1:10312718-10312737 Msa0716800:intron 40.0%
ATCTAGTCGTATGTAGGGAT+GGG - chr5_1:10312892-10312911 None:intergenic 40.0%
AATCTAGTCGTATGTAGGGA+TGG - chr5_1:10312893-10312912 None:intergenic 40.0%
CTAACAGATGAATTTGACGG+AGG + chr5_1:10313083-10313102 Msa0716800:intron 40.0%
AACAGATGAATTTGACGGAG+GGG + chr5_1:10313085-10313104 Msa0716800:intron 40.0%
! TCACACTATAAGAGCATGAG+TGG + chr5_1:10313398-10313417 Msa0716800:intron 40.0%
! CACACTATAAGAGCATGAGT+GGG + chr5_1:10313399-10313418 Msa0716800:intron 40.0%
! ACACTATAAGAGCATGAGTG+GGG + chr5_1:10313400-10313419 Msa0716800:intron 40.0%
TTATTCTCACCCTCACTCTA+TGG - chr5_1:10313495-10313514 None:intergenic 40.0%
CAAGACATACGACTAATCAG+GGG + chr5_1:10313759-10313778 Msa0716800:intron 40.0%
GGGCATAAATTTGAAAACCC+AGG - chr5_1:10313824-10313843 None:intergenic 40.0%
ATTTGATGTGAGAGGGTCTT+GGG - chr5_1:10313900-10313919 None:intergenic 40.0%
CGTCATGATTTGATGTGAGA+GGG - chr5_1:10313907-10313926 None:intergenic 40.0%
GTTCAAGAAGGTAGAAGACT+AGG - chr5_1:10314112-10314131 None:intergenic 40.0%
AACTGAATGGTGAAGTGAAG+TGG - chr5_1:10314166-10314185 None:intergenic 40.0%
GTAACCGTCCAAATTACTAC+AGG + chr5_1:10314366-10314385 Msa0716800:intron 40.0%
TATTTAGCGGAAATCAAGGG+AGG - chr5_1:10314693-10314712 None:intergenic 40.0%
! ATTAGTGTCAAAGGAGTGCA+TGG + chr5_1:10314885-10314904 Msa0716800:intron 40.0%
! GCATGGATTTTCAACTCTCA+CGG + chr5_1:10314902-10314921 Msa0716800:intron 40.0%
TGCAGGTGATGTTCTCAAAT+CGG + chr5_1:10315295-10315314 Msa0716800:intron 40.0%
! CAACATCCCAAAATTTTCGC+AGG + chr5_1:10315368-10315387 Msa0716800:five_prime_UTR 40.0%
AGAGAGAAAAAGGATGAGAG+AGG - chr5_1:10315515-10315534 None:intergenic 40.0%
GAAGATGTATTCGCTGCAAA+AGG - chr5_1:10315722-10315741 None:intergenic 40.0%
! AGACAAACTTTTCACACCAG+AGG + chr5_1:10315755-10315774 Msa0716800:five_prime_UTR 40.0%
! TTCATGTTTTGTGCAACCTC+TGG - chr5_1:10315774-10315793 None:intergenic 40.0%
CCGAAGCAAGAAATTGCTTA+AGG - chr5_1:10315985-10316004 None:intergenic 40.0%
!! ATTGTGGCTTTAGTCCAACA+TGG + chr5_1:10316611-10316630 Msa0716800:intron 40.0%
TGTAACTGGTTGAATTGAGG+CGG - chr5_1:10316957-10316976 None:intergenic 40.0%
!! TTAGTATTGTCTGGTTCGGA+CGG + chr5_1:10317063-10317082 Msa0716800:intron 40.0%
AAGCTAATGGTACAAGGCAA+GGG - chr5_1:10317361-10317380 None:intergenic 40.0%
AAAGCTAATGGTACAAGGCA+AGG - chr5_1:10317362-10317381 None:intergenic 40.0%
!!! TGTTTTTCAAGTTGGATCGG+TGG - chr5_1:10317474-10317493 None:intergenic 40.0%
! TTCCTTTAAACATGGCTTGC+GGG - chr5_1:10317515-10317534 None:intergenic 40.0%
! CAGCCTTATCATGGATTCTT+GGG - chr5_1:10317858-10317877 None:intergenic 40.0%
! TCAGCCTTATCATGGATTCT+TGG - chr5_1:10317859-10317878 None:intergenic 40.0%
! TGCTAACTTCAGCCTTATCA+TGG - chr5_1:10317867-10317886 None:intergenic 40.0%
GATTCATCATACCTAGTGAG+AGG - chr5_1:10317912-10317931 None:intergenic 40.0%
AAAGGATTTGTGCGCAAGAT+TGG - chr5_1:10318139-10318158 None:intergenic 40.0%
ACTAATGGCAAATGGCTCAA+AGG - chr5_1:10318157-10318176 None:intergenic 40.0%
ATGTCTATTCGGGACACTAA+TGG - chr5_1:10318172-10318191 None:intergenic 40.0%
CCGTTTCAAAATACATGTCG+TGG + chr5_1:10318377-10318396 Msa0716800:intron 40.0%
! ATGTATTGACATGCATGCAC+TGG - chr5_1:10318407-10318426 None:intergenic 40.0%
AAGATATCAACGAGCTTGAG+TGG + chr5_1:10318822-10318841 Msa0716800:intron 40.0%
! AAAATACGTTTTTGCCCCCT+CGG + chr5_1:10318974-10318993 Msa0716800:intron 40.0%
TTAACTACCGATGAATTCCC+CGG - chr5_1:10319043-10319062 None:intergenic 40.0%
! CAGCCGAATTTTGAATTCCT+CGG + chr5_1:10319066-10319085 Msa0716800:intron 40.0%
CTGCCGAGGAATTCAAAATT+CGG - chr5_1:10319072-10319091 None:intergenic 40.0%
! AAAATACGATTTTGCCCCCT+CGG - chr5_1:10319102-10319121 None:intergenic 40.0%
TATCCTTAATGAATGTCCGG+GGG + chr5_1:10319236-10319255 Msa0716800:intron 40.0%
ATGCTAAAGGGAAATGTCAC+AGG + chr5_1:10319692-10319711 Msa0716800:intron 40.0%
TGCTAAAGGGAAATGTCACA+GGG + chr5_1:10319693-10319712 Msa0716800:intron 40.0%
TCAATAGAGCTGGAAAAGGA+TGG - chr5_1:10319870-10319889 None:intergenic 40.0%
AATGCGATTCAAGGATGAGA+TGG + chr5_1:10319898-10319917 Msa0716800:intron 40.0%
CTTCAAAGCCTACAATATGC+AGG + chr5_1:10319951-10319970 Msa0716800:intron 40.0%
TTCGTAGAAGGATGAATGGA+AGG + chr5_1:10319983-10320002 Msa0716800:intron 40.0%
GAAGGATGAATGGAAGGATA+AGG + chr5_1:10319989-10320008 Msa0716800:intron 40.0%
GATGAATGGAAGGATAAGGA+TGG + chr5_1:10319993-10320012 Msa0716800:intron 40.0%
AAGGATAAGGATGGCTGAAT+GGG + chr5_1:10320002-10320021 Msa0716800:intron 40.0%
AGAAGAGGCAAACAGTTAGT+TGG + chr5_1:10320092-10320111 Msa0716800:intron 40.0%
!! CGGTTGATAGAATTCATGAG+TGG - chr5_1:10320158-10320177 None:intergenic 40.0%
AGGTTCGTGATATATTCACG+AGG + chr5_1:10320312-10320331 Msa0716800:intron 40.0%
TGTCTGGGTTGTTAGATTGT+AGG - chr5_1:10320446-10320465 None:intergenic 40.0%
! AACCCAGACAGTGATGATTT+TGG + chr5_1:10320456-10320475 Msa0716800:intron 40.0%
CTTTCTCTAGGTTAGAGATG+AGG + chr5_1:10320551-10320570 Msa0716800:intron 40.0%
! TCCTTCCTCTATTTCTCTCT+AGG + chr5_1:10321285-10321304 Msa0716800:intron 40.0%
TCCTAGAGAGAAATAGAGGA+AGG - chr5_1:10321289-10321308 None:intergenic 40.0%
! TGAGGTTAGCCAATTTGTCA+AGG + chr5_1:10321382-10321401 Msa0716800:intron 40.0%
AATTATGACACATGCATGCC+TGG + chr5_1:10321710-10321729 Msa0716800:intron 40.0%
AATACGATTGGGACCCAATA+TGG - chr5_1:10321737-10321756 None:intergenic 40.0%
TGAACACGGTGACCATTATT+TGG + chr5_1:10321893-10321912 Msa0716800:intron 40.0%
AGTTGGACAATGAAGATGGT+TGG + chr5_1:10321925-10321944 Msa0716800:intron 40.0%
CAGAATCTGATAACTGTACC+TGG - chr5_1:10321979-10321998 None:intergenic 40.0%
CAGGTACAGTTATCAGATTC+TGG + chr5_1:10321977-10321996 Msa0716800:CDS 40.0%
!! TGCTTTGAAGTGGTTTCAGA+TGG - chr5_1:10322006-10322025 None:intergenic 40.0%
AACTTGGCAGTTCCAAATCA+TGG + chr5_1:10322101-10322120 Msa0716800:intron 40.0%
! CCAGACTTAATTTTCTTCGG+CGG + chr5_1:10322153-10322172 Msa0716800:intron 40.0%
!!! TTTTCAAGTCGAGTGTTTGG+TGG + chr5_1:10322209-10322228 Msa0716800:CDS 40.0%
CAATGTGGAGAAATGTGTTG+TGG + chr5_1:10322248-10322267 Msa0716800:CDS 40.0%
GTTGTGGTTGGATTCAGTTA+TGG + chr5_1:10311669-10311688 Msa0716800:five_prime_UTR 40.0%
! TGGATTCAGTTATGGTGGAA+TGG + chr5_1:10311677-10311696 Msa0716800:five_prime_UTR 40.0%
! ATTCAGTTATGGTGGAATGG+TGG + chr5_1:10311680-10311699 Msa0716800:five_prime_UTR 40.0%
! TGGAATGGTGGCGTTTAAAA+TGG + chr5_1:10311692-10311711 Msa0716800:five_prime_UTR 40.0%
!!! GGTTGTTACTGGTTCAGTTT+TGG + chr5_1:10322341-10322360 Msa0716800:CDS 40.0%
TGCAGGTGATGTTCTCAAAT+AGG + chr5_1:10315295-10315314 Msa0716800:intron 40.0%
GGTGATGTTCTCAAATAGGA+AGG + chr5_1:10322800-10322819 Msa0716800:intron 40.0%
ATACATATGACAGGAGGCTA+GGG + chr5_1:10323210-10323229 Msa0716800:intron 40.0%
AGGCATGTTATGTTGGACTA+AGG + chr5_1:10323479-10323498 Msa0716800:three_prime_UTR 40.0%
GTCTAACATTACCTCCATCT+TGG - chr5_1:10323509-10323528 None:intergenic 40.0%
GGTGAACGTAATTTGGACAC+TGG + chr5_1:10311299-10311318 Msa0716800:five_prime_UTR 45.0%
! GGTTAGTTGGGTAGTGAAGA+TGG + chr5_1:10311320-10311339 Msa0716800:five_prime_UTR 45.0%
GTGGGTTTGGATATGGGTTT+GGG - chr5_1:10311438-10311457 None:intergenic 45.0%
GTGGAGAAATGTGTTGTGGT+TGG + chr5_1:10311657-10311676 Msa0716800:five_prime_UTR 45.0%
GTGGTTGGATTCAGTTATGG+TGG + chr5_1:10311672-10311691 Msa0716800:five_prime_UTR 45.0%
AACTGCACCACTTACTACCA+CGG - chr5_1:10311745-10311764 None:intergenic 45.0%
! GGTAGTAAGTGGTGCAGTTT+TGG + chr5_1:10311746-10311765 Msa0716800:five_prime_UTR 45.0%
!!! TGGTGCAGTTTTGGCTGTAA+AGG + chr5_1:10311755-10311774 Msa0716800:five_prime_UTR 45.0%
AGTAAGGCAGTTGAAGATGC+TGG + chr5_1:10311789-10311808 Msa0716800:five_prime_UTR 45.0%
TTGATGAGACGGTTGGGAAA+CGG - chr5_1:10311900-10311919 None:intergenic 45.0%
AAGTCCTTGATGAGACGGTT+GGG - chr5_1:10311906-10311925 None:intergenic 45.0%
AAAGTCCTTGATGAGACGGT+TGG - chr5_1:10311907-10311926 None:intergenic 45.0%
AATGCGGATGGGAATAGGTT+AGG + chr5_1:10312260-10312279 Msa0716800:intron 45.0%
TAAAGCCTAAGTCTGGTCTG+CGG + chr5_1:10312329-10312348 Msa0716800:intron 45.0%
TATCAGGCTTTCAGAAGGTC+AGG - chr5_1:10312385-10312404 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG - chr5_1:10312411-10312430 None:intergenic 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG + chr5_1:10312739-10312758 Msa0716800:intron 45.0%
TCGTATGTAGGGATGGGAAT+AGG - chr5_1:10312886-10312905 None:intergenic 45.0%
GATTTGATGTGAGAGGGTCT+TGG - chr5_1:10313901-10313920 None:intergenic 45.0%
GCGTCATGATTTGATGTGAG+AGG - chr5_1:10313908-10313927 None:intergenic 45.0%
GGTGATGTTCTCAAATCGGA+AGG + chr5_1:10315299-10315318 Msa0716800:intron 45.0%
TGCAGCGAATACATCTTCTG+TGG + chr5_1:10315724-10315743 Msa0716800:intron 45.0%
GCAGCGAATACATCTTCTGT+GGG + chr5_1:10315725-10315744 Msa0716800:intron 45.0%
CAGCGAATACATCTTCTGTG+GGG + chr5_1:10315726-10315745 Msa0716800:intron 45.0%
GAATATGCCAACGGTGTCTT+TGG + chr5_1:10316080-10316099 Msa0716800:intron 45.0%
GAACTTACCAAAGACACCGT+TGG - chr5_1:10316090-10316109 None:intergenic 45.0%
ATGGCTCCGTGATGTATAAG+TGG + chr5_1:10316914-10316933 Msa0716800:intron 45.0%
AGGAGACTATTGAGCTCACT+AGG + chr5_1:10317809-10317828 Msa0716800:intron 45.0%
AGACTATTGAGCTCACTAGG+AGG + chr5_1:10317812-10317831 Msa0716800:intron 45.0%
GACTATTGAGCTCACTAGGA+GGG + chr5_1:10317813-10317832 Msa0716800:intron 45.0%
ACTATTGAGCTCACTAGGAG+GGG + chr5_1:10317814-10317833 Msa0716800:intron 45.0%
!! AGGGCAATAGAAGTGCTGAT+TGG - chr5_1:10317892-10317911 None:intergenic 45.0%
ACTTCTATTGCCCTCTCACT+AGG + chr5_1:10317898-10317917 Msa0716800:intron 45.0%
TGCTCTGCATGCAGAAATGT+GGG - chr5_1:10318107-10318126 None:intergenic 45.0%
ATGCTCTGCATGCAGAAATG+TGG - chr5_1:10318108-10318127 None:intergenic 45.0%
TTCGGGACACTAATGGCAAA+TGG - chr5_1:10318165-10318184 None:intergenic 45.0%
GACATGGAGACAACACACAT+GGG + chr5_1:10318664-10318683 Msa0716800:intron 45.0%
ACATGGAGACAACACACATG+GGG + chr5_1:10318665-10318684 Msa0716800:intron 45.0%
GTTCACACATTTGAGAAGGC+TGG + chr5_1:10318940-10318959 Msa0716800:intron 45.0%
CTGCCGAGGAATTCAAAATC+CGG + chr5_1:10319004-10319023 Msa0716800:intron 45.0%
! CAGCCGGATTTTGAATTCCT+CGG - chr5_1:10319010-10319029 None:intergenic 45.0%
TTAACTGCCGGGGAATTCAT+CGG + chr5_1:10319033-10319052 Msa0716800:intron 45.0%
ATATACACGGATCACCGCAA+TGG + chr5_1:10319420-10319439 Msa0716800:intron 45.0%
TATACACGGATCACCGCAAT+GGG + chr5_1:10319421-10319440 Msa0716800:intron 45.0%
AGATGGGTCCTTCCCTATTT+AGG - chr5_1:10319463-10319482 None:intergenic 45.0%
GCTAAAGGGAAATGTCACAG+GGG + chr5_1:10319694-10319713 Msa0716800:intron 45.0%
CGTGAAAAAAAGCGAATGGG+TGG + chr5_1:10319820-10319839 Msa0716800:intron 45.0%
AAAAAGCGAATGGGTGGCAA+TGG + chr5_1:10319826-10319845 Msa0716800:intron 45.0%
AAAAGCGAATGGGTGGCAAT+GGG + chr5_1:10319827-10319846 Msa0716800:intron 45.0%
GAAGGATAAGGATGGCTGAA+TGG + chr5_1:10320001-10320020 Msa0716800:intron 45.0%
CCTTTGGCATAACGTAGGAA+CGG - chr5_1:10320178-10320197 None:intergenic 45.0%
CGTTCCTACGTTATGCCAAA+GGG + chr5_1:10320176-10320195 Msa0716800:intron 45.0%
TCTTCCCTTTGGCATAACGT+AGG - chr5_1:10320183-10320202 None:intergenic 45.0%
ATGCCAAAGGGAAGATCCAA+CGG + chr5_1:10320188-10320207 Msa0716800:intron 45.0%
!! AGAAAGAGAGAGAGCGTTGA+AGG - chr5_1:10320537-10320556 None:intergenic 45.0%
AACGCTCTCTCTCTTTCTCT+AGG + chr5_1:10320539-10320558 Msa0716800:intron 45.0%
! GGTTAGCCAATTTGTCAAGG+TGG + chr5_1:10321385-10321404 Msa0716800:intron 45.0%
GCATAGCCACCTTGACAAAT+TGG - chr5_1:10321394-10321413 None:intergenic 45.0%
ATGCATGCCTGGTCCATATT+GGG + chr5_1:10321721-10321740 Msa0716800:intron 45.0%
GAGAAAGCTAGTGCAATCAC+AGG + chr5_1:10321856-10321875 Msa0716800:intron 45.0%
TGGTGTGAAGCTTTGCACAA+TGG + chr5_1:10321945-10321964 Msa0716800:CDS 45.0%
CCGCCGAAGAAAATTAAGTC+TGG - chr5_1:10322156-10322175 None:intergenic 45.0%
TGAAAAGCCAGTGATCGATC+CGG - chr5_1:10322195-10322214 None:intergenic 45.0%
!!! GGCTTTTCAAGTCGAGTGTT+TGG + chr5_1:10322206-10322225 Msa0716800:CDS 45.0%
! AGTGTTTGGTGGCAGGATTA+AGG + chr5_1:10322220-10322239 Msa0716800:CDS 45.0%
GTGGAGAAATGTGTTGTGGT+TGG + chr5_1:10311657-10311676 Msa0716800:five_prime_UTR 45.0%
GTGGTTGGATTCAGTTATGG+TGG + chr5_1:10311672-10311691 Msa0716800:five_prime_UTR 45.0%
GGCTGAGATGTATTGTGAGT+TGG + chr5_1:10322308-10322327 Msa0716800:CDS 45.0%
!! TTGTGAGTTGGTTCAAGCTG+TGG + chr5_1:10322320-10322339 Msa0716800:CDS 45.0%
GTTCAAGCTGTGGTTGTTAC+TGG + chr5_1:10322330-10322349 Msa0716800:CDS 45.0%
TTGAGGAGACTTCTCTCTGT+TGG + chr5_1:10322453-10322472 Msa0716800:intron 45.0%
! ACTTATGTGAGCATCGTTGC+AGG + chr5_1:10322779-10322798 Msa0716800:intron 45.0%
TTCTCAAATAGGAAGGAGCG+AGG + chr5_1:10322807-10322826 Msa0716800:CDS 45.0%
GATACATATGACAGGAGGCT+AGG + chr5_1:10323209-10323228 Msa0716800:intron 45.0%
! TGCTGGTCATTTGGCTCATT+TGG + chr5_1:10323262-10323281 Msa0716800:CDS 45.0%
! GAGAGTGCAATTGAGCACTA+AGG + chr5_1:10323426-10323445 Msa0716800:three_prime_UTR 45.0%
TGGACTAAGGTTGTCCAAGA+TGG + chr5_1:10323492-10323511 Msa0716800:three_prime_UTR 45.0%
ACTAAGGTTGTCCAAGATGG+AGG + chr5_1:10323495-10323514 Msa0716800:three_prime_UTR 45.0%
!! TTTATGTATATATTATAATA+AGG + chr5_1:10314581-10314600 Msa0716800:intron 5.0%
!! TTATGTATATATTATAATAA+GGG + chr5_1:10314582-10314601 Msa0716800:intron 5.0%
!! TTAAAAAAAAAAAACTTAAT+TGG - chr5_1:10316251-10316270 None:intergenic 5.0%
!! TGTATAATTAAATATATTAA+TGG - chr5_1:10318438-10318457 None:intergenic 5.0%
AGTTGGGTAGTGAAGATGGC+AGG + chr5_1:10311324-10311343 Msa0716800:five_prime_UTR 50.0%
CGTGGGTTTGGATATGGGTT+TGG - chr5_1:10311439-10311458 None:intergenic 50.0%
GGCTTCGTGGGTTTGGATAT+GGG - chr5_1:10311444-10311463 None:intergenic 50.0%
TGGCTTCGTGGGTTTGGATA+TGG - chr5_1:10311445-10311464 None:intergenic 50.0%
!! AGAACCACTACTGGCTTCGT+GGG - chr5_1:10311456-10311475 None:intergenic 50.0%
TGGCTCAACCACCGATAAGA+CGG + chr5_1:10311578-10311597 Msa0716800:five_prime_UTR 50.0%
CAATGACCGGTCCGTCTTAT+CGG - chr5_1:10311592-10311611 None:intergenic 50.0%
CGGCTTGAAAAGCCAATGAC+CGG - chr5_1:10311605-10311624 None:intergenic 50.0%
!! TTTTCAAGCCGAGTGCTTGG+CGG + chr5_1:10311614-10311633 Msa0716800:five_prime_UTR 50.0%
GCGGTGGGGTTAAAGAAACT+CGG + chr5_1:10311633-10311652 Msa0716800:five_prime_UTR 50.0%
CGGTGGGGTTAAAGAAACTC+GGG + chr5_1:10311634-10311653 Msa0716800:five_prime_UTR 50.0%
GGTGGGGTTAAAGAAACTCG+GGG + chr5_1:10311635-10311654 Msa0716800:five_prime_UTR 50.0%
!! GGCTGAGATGTATAGTGGGT+TGG + chr5_1:10311713-10311732 Msa0716800:five_prime_UTR 50.0%
GTTCAAGCCGTGGTAGTAAG+TGG + chr5_1:10311735-10311754 Msa0716800:five_prime_UTR 50.0%
GTTTCCCAACCGTCTCATCA+AGG + chr5_1:10311899-10311918 Msa0716800:five_prime_UTR 50.0%
GGCTTTGCAAAGCCTAAGTC+TGG + chr5_1:10312291-10312310 Msa0716800:intron 50.0%
CAGGCTCAGGCCTAAAAAGT+AGG - chr5_1:10312366-10312385 None:intergenic 50.0%
GGCTGTATCAGGCTTTCAGA+AGG - chr5_1:10312390-10312409 None:intergenic 50.0%
GTCGGCCTAATAGGCTTAAG+AGG + chr5_1:10312727-10312746 Msa0716800:intron 50.0%
!! TTTTTGAGAGGCCTGAGGTC+TGG + chr5_1:10312751-10312770 Msa0716800:intron 50.0%
AGCTTAAAAGGCCAGACCTC+AGG - chr5_1:10312765-10312784 None:intergenic 50.0%
TGTAGGGATGGGAATAGGTC+AGG - chr5_1:10312881-10312900 None:intergenic 50.0%
! AGGCTAGTAGTTTGCAGTGC+AGG + chr5_1:10313345-10313364 Msa0716800:intron 50.0%
GACATACGACTAATCAGGGG+CGG + chr5_1:10313762-10313781 Msa0716800:intron 50.0%
GCGGAAATCAAGGGAGGTAA+TGG - chr5_1:10314687-10314706 None:intergenic 50.0%
TTAGTCACAGTGGCGTATCC+AGG - chr5_1:10314862-10314881 None:intergenic 50.0%
! GATAAAGAAGGCTGGCCACT+TGG + chr5_1:10315925-10315944 Msa0716800:five_prime_UTR 50.0%
GTCGCTCAATATGAGCCAAG+TGG - chr5_1:10315943-10315962 None:intergenic 50.0%
!! GTGGCTTTAGTCCAACATGG+AGG + chr5_1:10316614-10316633 Msa0716800:intron 50.0%
GGGAATGCCGCAATTGTAAC+TGG - chr5_1:10316971-10316990 None:intergenic 50.0%
TGCCCGCAAGCCATGTTTAA+AGG + chr5_1:10317510-10317529 Msa0716800:intron 50.0%
ATTCCTAGGCATGCAAGCTC+CGG + chr5_1:10317772-10317791 Msa0716800:intron 50.0%
TGATACGCCGCATCAACGAA+GGG + chr5_1:10317963-10317982 Msa0716800:intron 50.0%
GTGGGGTTTATATTCGGGGT+TGG - chr5_1:10318089-10318108 None:intergenic 50.0%
GCTCTGCATGCAGAAATGTG+GGG - chr5_1:10318106-10318125 None:intergenic 50.0%
CGACATGGAGACAACACACA+TGG + chr5_1:10318663-10318682 Msa0716800:intron 50.0%
GCGGTGATCCGTGTATATAG+AGG - chr5_1:10319418-10319437 None:intergenic 50.0%
ATACACGGATCACCGCAATG+GGG + chr5_1:10319422-10319441 Msa0716800:intron 50.0%
CTCCTAATATCGCCCCATTG+CGG - chr5_1:10319437-10319456 None:intergenic 50.0%
!! AGGAGGTGCCTAAATAGGGA+AGG + chr5_1:10319452-10319471 Msa0716800:intron 50.0%
AAAGCGAATGGGTGGCAATG+GGG + chr5_1:10319828-10319847 Msa0716800:intron 50.0%
CCGTTCCTACGTTATGCCAA+AGG + chr5_1:10320175-10320194 Msa0716800:intron 50.0%
TCACCGTTGGATCTTCCCTT+TGG - chr5_1:10320194-10320213 None:intergenic 50.0%
!! GTGTATGTTTGGTTCTGCGG+TGG - chr5_1:10321075-10321094 None:intergenic 50.0%
!! GTGAATATAATGGGCCGTGC+TGG - chr5_1:10321419-10321438 None:intergenic 50.0%
CATGCATGCCTGGTCCATAT+TGG + chr5_1:10321720-10321739 Msa0716800:intron 50.0%
ATTGGGACCCAATATGGACC+AGG - chr5_1:10321731-10321750 None:intergenic 50.0%
!! CTCGGGTTTGTGCTTTGAAG+TGG - chr5_1:10322016-10322035 None:intergenic 50.0%
!!! AGGGGTTTTGAGATGGACTC+GGG - chr5_1:10322033-10322052 None:intergenic 50.0%
!!! GAGGGGTTTTGAGATGGACT+CGG - chr5_1:10322034-10322053 None:intergenic 50.0%
!!! TGGCTTGAGGGGTTTTGAGA+TGG - chr5_1:10322040-10322059 None:intergenic 50.0%
CGGCTCAATCACTGATAAGC+CGG + chr5_1:10322173-10322192 Msa0716800:CDS 50.0%
TGATAAGCCGGATCGATCAC+TGG + chr5_1:10322185-10322204 Msa0716800:CDS 50.0%
!! CACTACTGGCTTCGTGGGTT+TGG - chr5_1:10311451-10311470 None:intergenic 55.0%
CAAACCCACGAAGCCAGTAG+TGG + chr5_1:10311449-10311468 Msa0716800:intron 55.0%
!! GAGAACCACTACTGGCTTCG+TGG - chr5_1:10311457-10311476 None:intergenic 55.0%
CCAGTAGTGGTTCTCCTCCA+CGG + chr5_1:10311462-10311481 Msa0716800:five_prime_UTR 55.0%
!! GCGGTGATGGACTAGCTACT+TGG + chr5_1:10311490-10311509 Msa0716800:five_prime_UTR 55.0%
CAACCACCGATAAGACGGAC+CGG + chr5_1:10311583-10311602 Msa0716800:five_prime_UTR 55.0%
CGATAAGACGGACCGGTCAT+TGG + chr5_1:10311590-10311609 Msa0716800:five_prime_UTR 55.0%
!! GGCTTTTCAAGCCGAGTGCT+TGG + chr5_1:10311611-10311630 Msa0716800:five_prime_UTR 55.0%
GGGGTTAAAGAAACTCGGGG+TGG + chr5_1:10311638-10311657 Msa0716800:five_prime_UTR 55.0%
CGGGGTGGAGAAATGTGTTG+TGG + chr5_1:10311653-10311672 Msa0716800:five_prime_UTR 55.0%
!! TAGTGGGTTGGTTCAAGCCG+TGG + chr5_1:10311725-10311744 Msa0716800:five_prime_UTR 55.0%
GGAATAGGTTAGGCCGAGCT+GGG + chr5_1:10312270-10312289 Msa0716800:intron 55.0%
AGGCTTTGCAAAGCCCAGCT+CGG - chr5_1:10312286-10312305 None:intergenic 55.0%
GCTTTCAGAAGGTCAGGCTC+AGG - chr5_1:10312379-10312398 None:intergenic 55.0%
ACAGGCTAGCAGGCTGTATC+AGG - chr5_1:10312401-10312420 None:intergenic 55.0%
!! GAGGCTTTTTGAGAGGCCTG+AGG + chr5_1:10312746-10312765 Msa0716800:intron 55.0%
TGATGTGAGAGGGTCTTGGG+AGG - chr5_1:10313897-10313916 None:intergenic 55.0%
TATCCAGGACCCTGGTTCAG+GGG - chr5_1:10314847-10314866 None:intergenic 55.0%
GTATCCAGGACCCTGGTTCA+GGG - chr5_1:10314848-10314867 None:intergenic 55.0%
TTTCCGGAGCTTGCATGCCT+AGG - chr5_1:10317778-10317797 None:intergenic 55.0%
CTGATACGCCGCATCAACGA+AGG + chr5_1:10317962-10317981 Msa0716800:intron 55.0%
GATACGCCGCATCAACGAAG+GGG + chr5_1:10317964-10317983 Msa0716800:intron 55.0%
! TTGGAGCTAGCTTGGCAGGT+TGG - chr5_1:10318070-10318089 None:intergenic 55.0%
ATTCGGGGTTGGAGCTAGCT+TGG - chr5_1:10318078-10318097 None:intergenic 55.0%
ATCCGGCTGCAGTTAACTGC+CGG + chr5_1:10319021-10319040 Msa0716800:intron 55.0%
GTGCCCCCGGACATTCATTA+AGG - chr5_1:10319242-10319261 None:intergenic 55.0%
! TAATGAATGTCCGGGGGCAC+CGG + chr5_1:10319242-10319261 Msa0716800:intron 55.0%
CACCGCAATGGGGCGATATT+AGG + chr5_1:10319432-10319451 Msa0716800:intron 55.0%
CGCAATGGGGCGATATTAGG+AGG + chr5_1:10319435-10319454 Msa0716800:intron 55.0%
AGGGAAGATCCAACGGTGAC+AGG + chr5_1:10320195-10320214 Msa0716800:intron 55.0%
TGCACAATGGAGACAGAGCC+AGG + chr5_1:10321958-10321977 Msa0716800:CDS 55.0%
CTCAAAACCCCTCAAGCCAG+TGG + chr5_1:10322041-10322060 Msa0716800:CDS 55.0%
AAAACCCCTCAAGCCAGTGG+TGG + chr5_1:10322044-10322063 Msa0716800:CDS 55.0%
!! AGAACCACCACTGGCTTGAG+GGG - chr5_1:10322051-10322070 None:intergenic 55.0%
!! GAGAACCACCACTGGCTTGA+GGG - chr5_1:10322052-10322071 None:intergenic 55.0%
!! GCGGTGATGGACTTGCAACT+TGG + chr5_1:10322085-10322104 Msa0716800:intron 55.0%
! CAAGTCGAGTGTTTGGTGGC+AGG + chr5_1:10322213-10322232 Msa0716800:CDS 55.0%
GGAGCGAGGTGAGCTATTAG+AGG + chr5_1:10322821-10322840 Msa0716800:CDS 55.0%
CTCTGCAGAGGGAACTTGTG+TGG - chr5_1:10323025-10323044 None:intergenic 55.0%
CCGTGGAGGAGAACCACTAC+TGG - chr5_1:10311465-10311484 None:intergenic 60.0%
GTTCTCCTCCACGGCTTCTG+CGG + chr5_1:10311471-10311490 Msa0716800:five_prime_UTR 60.0%
TGACCGGTCCGTCTTATCGG+TGG - chr5_1:10311589-10311608 None:intergenic 60.0%
TAACCCCACCGCCAAGCACT+CGG - chr5_1:10311625-10311644 None:intergenic 60.0%
GGGAATAGGTTAGGCCGAGC+TGG + chr5_1:10312269-10312288 Msa0716800:intron 60.0%
ACAGGCCGCAGACCAGACTT+AGG - chr5_1:10312337-10312356 None:intergenic 60.0%
CTACGGCCTAGCCTACGACA+GGG - chr5_1:10312843-10312862 None:intergenic 60.0%
ATAGGTCAGGCCGGCCTACA+GGG - chr5_1:10312868-10312887 None:intergenic 60.0%
AATAGGTCAGGCCGGCCTAC+AGG - chr5_1:10312869-10312888 None:intergenic 60.0%
GGGATGGGAATAGGTCAGGC+CGG - chr5_1:10312877-10312896 None:intergenic 60.0%
GGACCCAGGTGTGTGTGTCA+GGG + chr5_1:10313783-10313802 Msa0716800:intron 60.0%
GACCCAGGTGTGTGTGTCAG+GGG + chr5_1:10313784-10313803 Msa0716800:intron 60.0%
AGCCCCTGACACACACACCT+GGG - chr5_1:10313789-10313808 None:intergenic 60.0%
ATTTCCGCACCCCCTGAACC+AGG + chr5_1:10314834-10314853 Msa0716800:intron 60.0%
TTTCCGCACCCCCTGAACCA+GGG + chr5_1:10314835-10314854 Msa0716800:intron 60.0%
ATCCAGGACCCTGGTTCAGG+GGG - chr5_1:10314846-10314865 None:intergenic 60.0%
CGTATCCAGGACCCTGGTTC+AGG - chr5_1:10314849-10314868 None:intergenic 60.0%
GGACGACCCCTTCGTTGATG+CGG - chr5_1:10317973-10317992 None:intergenic 60.0%
TCGGCAGTTAACTGCCGAGG+GGG - chr5_1:10318993-10319012 None:intergenic 60.0%
CTCGGCAGTTAACTGCCGAG+GGG - chr5_1:10318992-10319011 None:intergenic 60.0%
CCTCGGCAGTTAACTGCCGA+GGG - chr5_1:10318991-10319010 None:intergenic 60.0%
TCCTCGGCAGTTAACTGCCG+AGG - chr5_1:10319082-10319101 None:intergenic 60.0%
TCCGGCTGCAGTTAACTGCC+GGG + chr5_1:10319022-10319041 Msa0716800:intron 60.0%
TCCTCGGCAGTTAACTGCCG+AGG + chr5_1:10319082-10319101 Msa0716800:intron 60.0%
CCTCGGCAGTTAACTGCCGA+GGG + chr5_1:10318991-10319010 Msa0716800:intron 60.0%
CTCGGCAGTTAACTGCCGAG+GGG + chr5_1:10318992-10319011 Msa0716800:intron 60.0%
TCGGCAGTTAACTGCCGAGG+GGG + chr5_1:10318993-10319012 Msa0716800:intron 60.0%
GAAATGCTAACCGGTGCCCC+CGG - chr5_1:10319255-10319274 None:intergenic 60.0%
TCACGAGTGCCTGTCACCGT+TGG - chr5_1:10320207-10320226 None:intergenic 60.0%
AGGTGGCTATGCTGCCAGCA+CGG + chr5_1:10321402-10321421 Msa0716800:intron 60.0%
!! GGAGAACCACCACTGGCTTG+AGG - chr5_1:10322053-10322072 None:intergenic 60.0%
CCAGTGGTGGTTCTCCTCCA+CGG + chr5_1:10322057-10322076 Msa0716800:CDS 60.0%
GTTCTCCTCCACGGCTTCTG+CGG + chr5_1:10311471-10311490 Msa0716800:five_prime_UTR 60.0%
CATCACCGCAGAAGCCGTGG+AGG - chr5_1:10311479-10311498 None:intergenic 65.0%
CTCCACGGCTTCTGCGGTGA+TGG + chr5_1:10311477-10311496 Msa0716800:five_prime_UTR 65.0%
GTCCATCACCGCAGAAGCCG+TGG - chr5_1:10311482-10311501 None:intergenic 65.0%
TCAAGCCGAGTGCTTGGCGG+TGG + chr5_1:10311617-10311636 Msa0716800:five_prime_UTR 65.0%
CAAGCCGAGTGCTTGGCGGT+GGG + chr5_1:10311618-10311637 Msa0716800:five_prime_UTR 65.0%
AAGCCGAGTGCTTGGCGGTG+GGG + chr5_1:10311619-10311638 Msa0716800:five_prime_UTR 65.0%
AGTCTGGCCTGCCCTGTCGT+AGG + chr5_1:10312829-10312848 Msa0716800:intron 65.0%
CCTACGGCCTAGCCTACGAC+AGG - chr5_1:10312844-10312863 None:intergenic 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG + chr5_1:10312841-10312860 Msa0716800:intron 65.0%
TAGGTCAGGCCGGCCTACAG+GGG - chr5_1:10312867-10312886 None:intergenic 65.0%
GACTAATCAGGGGCGGACCC+AGG + chr5_1:10313769-10313788 Msa0716800:intron 65.0%
CGGACCCAGGTGTGTGTGTC+AGG + chr5_1:10313782-10313801 Msa0716800:intron 65.0%
CAGCCCCTGACACACACACC+TGG - chr5_1:10313790-10313809 None:intergenic 65.0%
GGGCTGCACTTGCACACCCT+GGG + chr5_1:10313804-10313823 Msa0716800:intron 65.0%
CAGTGGCGTATCCAGGACCC+TGG - chr5_1:10314855-10314874 None:intergenic 65.0%
! GGGGTTGGAGCTAGCTTGGC+AGG - chr5_1:10318074-10318093 None:intergenic 65.0%
CCCTCGGCAGTTAACTGCCG+AGG + chr5_1:10318990-10319009 Msa0716800:intron 65.0%
CCCCGGCAGTTAACTGCAGC+CGG - chr5_1:10319026-10319045 None:intergenic 65.0%
CCGGCTGCAGTTAACTGCCG+GGG + chr5_1:10319023-10319042 Msa0716800:intron 65.0%
CCCTCGGCAGTTAACTGCCG+AGG - chr5_1:10318990-10319009 None:intergenic 65.0%
CCGTGGAGGAGAACCACCAC+TGG - chr5_1:10322060-10322079 None:intergenic 65.0%
CATCACCGCAGAAGCCGTGG+AGG - chr5_1:10311479-10311498 None:intergenic 65.0%
CTCCACGGCTTCTGCGGTGA+TGG + chr5_1:10311477-10311496 Msa0716800:five_prime_UTR 65.0%
GTCCATCACCGCAGAAGCCG+TGG - chr5_1:10311482-10311501 None:intergenic 65.0%
GGCCTGCCCTGTCGTAGGCT+AGG + chr5_1:10312834-10312853 Msa0716800:intron 70.0%
GGCCTAGCCTACGACAGGGC+AGG - chr5_1:10312839-10312858 None:intergenic 70.0%
GCTAGGCCGTAGGCCCCTGT+AGG + chr5_1:10312851-10312870 Msa0716800:intron 70.0%
GGGGCTGCACTTGCACACCC+TGG + chr5_1:10313803-10313822 Msa0716800:intron 70.0%
GGACCCTGGTTCAGGGGGTG+CGG - chr5_1:10314841-10314860 None:intergenic 70.0%
CACCCCCTGAACCAGGGTCC+TGG + chr5_1:10314841-10314860 Msa0716800:intron 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG + chr5_1:10312855-10312874 Msa0716800:intron 75.0%
GGCCGGCCTACAGGGGCCTA+CGG - chr5_1:10312860-10312879 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10311213 10323539 10311213 ID=Msa0716800;Name=Msa0716800
chr5_1 mRNA 10311213 10323539 10311213 ID=Msa0716800-mRNA-1;Parent=Msa0716800;Name=Msa0716800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1007|0.66|0.7|1|0.77|0.7|10|166|241
chr5_1 exon 10311213 10311428 10311213 ID=Msa0716800-mRNA-1:exon:4136;Parent=Msa0716800-mRNA-1
chr5_1 exon 10311453 10311932 10311453 ID=Msa0716800-mRNA-1:exon:4137;Parent=Msa0716800-mRNA-1
chr5_1 exon 10315300 10315389 10315300 ID=Msa0716800-mRNA-1:exon:4138;Parent=Msa0716800-mRNA-1
chr5_1 exon 10315729 10315796 10315729 ID=Msa0716800-mRNA-1:exon:4139;Parent=Msa0716800-mRNA-1
chr5_1 exon 10315895 10316092 10315895 ID=Msa0716800-mRNA-1:exon:4140;Parent=Msa0716800-mRNA-1
chr5_1 exon 10321940 10322087 10321940 ID=Msa0716800-mRNA-1:exon:4141;Parent=Msa0716800-mRNA-1
chr5_1 exon 10322157 10322380 10322157 ID=Msa0716800-mRNA-1:exon:4142;Parent=Msa0716800-mRNA-1
chr5_1 exon 10322801 10322890 10322801 ID=Msa0716800-mRNA-1:exon:4143;Parent=Msa0716800-mRNA-1
chr5_1 exon 10323043 10323110 10323043 ID=Msa0716800-mRNA-1:exon:4144;Parent=Msa0716800-mRNA-1
chr5_1 exon 10323223 10323539 10323223 ID=Msa0716800-mRNA-1:exon:4145;Parent=Msa0716800-mRNA-1
chr5_1 five_prime_UTR 10311213 10311428 10311213 ID=Msa0716800-mRNA-1:five_prime_utr;Parent=Msa0716800-mRNA-1
chr5_1 five_prime_UTR 10311453 10311932 10311453 ID=Msa0716800-mRNA-1:five_prime_utr;Parent=Msa0716800-mRNA-1
chr5_1 five_prime_UTR 10315300 10315389 10315300 ID=Msa0716800-mRNA-1:five_prime_utr;Parent=Msa0716800-mRNA-1
chr5_1 five_prime_UTR 10315729 10315796 10315729 ID=Msa0716800-mRNA-1:five_prime_utr;Parent=Msa0716800-mRNA-1
chr5_1 five_prime_UTR 10315895 10316047 10315895 ID=Msa0716800-mRNA-1:five_prime_utr;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10316048 10316092 10316048 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10321940 10322087 10321940 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10322157 10322380 10322157 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10322801 10322890 10322801 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10323043 10323110 10323043 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 CDS 10323223 10323373 10323223 ID=Msa0716800-mRNA-1:cds;Parent=Msa0716800-mRNA-1
chr5_1 three_prime_UTR 10323374 10323539 10323374 ID=Msa0716800-mRNA-1:three_prime_utr;Parent=Msa0716800-mRNA-1
Gene Sequence

>Msa0716800

ATGAAAACAAAAACAATCCAGTTCATATCAATGAATATGCCAACGATGGTTGGTGTGAAGCTTTGCACAATGGAGACAGAGCCAGGTACAGTTATCAGATTCTGGGTTCCATCTGAAACCACTTCAAAGCACAAACCCGAGTCCATCTCAAAACCCCTCAAGCCAGTGGTGGTTCTCCTCCACGGCTTCTGCGACTTAATTTTCTTCGGCGGCTCAATCACTGATAAGCCGGATCGATCACTGGCTTTTCAAGTCGAGTGTTTGGTGGCAGGATTAAGGAAACTCAATGTGGAGAAATGTGTTGTGGTTGGATTCAGTTATGGTGGAATGGTGGCGTTTAAAATGGCTGAGATGTATTGTGAGTTGGTTCAAGCTGTGGTTGTTACTGGTTCAGTTTTGGCTATGACAGAATCTATGGTGATGTTCTCAAATAGGAAGGAGCGAGGTGAGCTATTAGAGGCTACAATCAATGGCTACAGAGACATCAACATCCCAAAATTACCGCATAGAATACATCTTTTATGGGGTGAGAAAGATGAAATTTTTAAACCAGAGGTTGCTCTAAATATGAAAGAGAGGCTAGGGAATAATGCAACATTTGAAGTAATAAAGAATGCTGGTCATTTGGCTCATTTGGAACGACCATGTATTTACAATAGGTGCCTAAAGAAGTTTCTTTCTTCCATTATGCTTCATGAAAACAATTTATCCAATTCACATCTATGA
Protein sequence

>Msa0716800

MKTKTIQFISMNMPTMVGVKLCTMETEPGTVIRFWVPSETTSKHKPESISKPLKPVVVLLHGFCDLIFFGGSITDKPDRSLAFQVECLVAGLRKLNVEKCVVVGFSYGGMVAFKMAEMYCELVQAVVVTGSVLAMTESMVMFSNRKERGELLEATINGYRDINIPKLPHRIHLLWGEKDEIFKPEVALNMKERLGNNATFEVIKNAGHLAHLERPCIYNRCLKKFLSSIMLHENNLSNSHL*