Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757870 | G7KDL3 | 95.597 | 318 | 6 | 1 | 1 | 310 | 1 | 318 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004360 | Msa0757870 | 0.813227 | 2.847760e-51 | -8.615850e-47 |
| Msa0005050 | Msa0757870 | 0.843275 | 1.548937e-58 | -8.615850e-47 |
| Msa0032370 | Msa0757870 | 0.817136 | 3.856640e-52 | -8.615850e-47 |
| Msa0032840 | Msa0757870 | -0.807168 | 5.767495e-50 | -8.615850e-47 |
| Msa0043210 | Msa0757870 | 0.813993 | 1.932245e-51 | -8.615850e-47 |
| Msa0050040 | Msa0757870 | 0.817364 | 3.426757e-52 | -8.615850e-47 |
| Msa0050990 | Msa0757870 | 0.803929 | 2.756517e-49 | -8.615850e-47 |
| Msa0053110 | Msa0757870 | 0.853878 | 1.785447e-61 | -8.615850e-47 |
| Msa0072810 | Msa0757870 | 0.802763 | 4.808491e-49 | -8.615850e-47 |
| Msa0073670 | Msa0757870 | 0.800029 | 1.745331e-48 | -8.615850e-47 |
| Msa0083920 | Msa0757870 | 0.830359 | 3.070198e-55 | -8.615850e-47 |
| Msa0098440 | Msa0757870 | 0.841156 | 5.637459e-58 | -8.615850e-47 |
| Msa0101300 | Msa0757870 | 0.808487 | 3.023416e-50 | -8.615850e-47 |
| Msa0102990 | Msa0757870 | 0.818221 | 2.194951e-52 | -8.615850e-47 |
| Msa0113160 | Msa0757870 | 0.802692 | 4.973230e-49 | -8.615850e-47 |
| Msa0114540 | Msa0757870 | -0.822940 | 1.810271e-53 | -8.615850e-47 |
| Msa0619980 | Msa0757870 | 0.806231 | 9.095157e-50 | -8.615850e-47 |
| Msa0641250 | Msa0757870 | 0.845593 | 3.687524e-59 | -8.615850e-47 |
| Msa0647380 | Msa0757870 | 0.801512 | 8.694297e-49 | -8.615850e-47 |
| Msa0663680 | Msa0757870 | 0.803184 | 3.934718e-49 | -8.615850e-47 |
| Msa0678890 | Msa0757870 | 0.822280 | 2.577172e-53 | -8.615850e-47 |
| Msa0680150 | Msa0757870 | 0.834769 | 2.475374e-56 | -8.615850e-47 |
| Msa0688500 | Msa0757870 | 0.972290 | 1.589882e-134 | -8.615850e-47 |
| Msa0707220 | Msa0757870 | 0.831273 | 1.832601e-55 | -8.615850e-47 |
| Msa0716800 | Msa0757870 | 0.944584 | 1.491132e-103 | -8.615850e-47 |
| Msa0747780 | Msa0757870 | 0.856906 | 2.343036e-62 | -8.615850e-47 |
| Msa0757870 | Msa0761580 | 0.830025 | 3.704850e-55 | -8.615850e-47 |
| Msa0757870 | Msa0799240 | 0.881934 | 1.587601e-70 | -8.615850e-47 |
| Msa0757870 | Msa0807110 | 0.810050 | 1.397660e-50 | -8.615850e-47 |
| Msa0757870 | Msa0833040 | 0.808890 | 2.479067e-50 | -8.615850e-47 |
| Msa0757870 | Msa0867350 | 0.848109 | 7.554317e-60 | -8.615850e-47 |
| Msa0757870 | Msa0871890 | 0.801653 | 8.133160e-49 | -8.615850e-47 |
| Msa0757870 | Msa0872310 | 0.835704 | 1.437295e-56 | -8.615850e-47 |
| Msa0757870 | Msa0873190 | 0.803867 | 2.840619e-49 | -8.615850e-47 |
| Msa0757870 | Msa0898730 | 0.839512 | 1.516194e-57 | -8.615850e-47 |
| Msa0757870 | Msa0905550 | 0.851349 | 9.406795e-61 | -8.615850e-47 |
| Msa0757870 | Msa0930780 | 0.802780 | 4.768512e-49 | -8.615850e-47 |
| Msa0757870 | Msa0937550 | 0.854896 | 9.070304e-62 | -8.615850e-47 |
| Msa0757870 | Msa0938430 | 0.821006 | 5.077119e-53 | -8.615850e-47 |
| Msa0757870 | Msa0974750 | 0.824059 | 9.907401e-54 | -8.615850e-47 |
| Msa0757870 | Msa1007350 | 0.822049 | 2.916591e-53 | -8.615850e-47 |
| Msa0757870 | Msa1032450 | 0.845266 | 4.520286e-59 | -8.615850e-47 |
| Msa0757870 | Msa1033560 | 0.815191 | 1.049074e-51 | -8.615850e-47 |
| Msa0757870 | Msa1037900 | 0.809616 | 1.733115e-50 | -8.615850e-47 |
| Msa0757870 | Msa1041530 | 0.844627 | 6.722859e-59 | -8.615850e-47 |
| Msa0757870 | Msa1045780 | 0.812603 | 3.902250e-51 | -8.615850e-47 |
| Msa0757870 | Msa1081570 | 0.841835 | 3.733384e-58 | -8.615850e-47 |
| Msa0757870 | Msa1088130 | 0.803687 | 3.094573e-49 | -8.615850e-47 |
| Msa0757870 | Msa1106810 | 0.806063 | 9.864532e-50 | -8.615850e-47 |
| Msa0757870 | Msa1123880 | 0.840232 | 9.845570e-58 | -8.615850e-47 |
| Msa0757870 | Msa1127140 | 0.855918 | 4.568067e-62 | -8.615850e-47 |
| Msa0757870 | Msa1129960 | 0.832062 | 1.171447e-55 | -8.615850e-47 |
| Msa0757870 | Msa1129970 | 0.824889 | 6.319181e-54 | -8.615850e-47 |
| Msa0757870 | Msa1130010 | 0.818593 | 1.807322e-52 | -8.615850e-47 |
| Msa0757870 | Msa1136230 | 0.819346 | 1.218793e-52 | -8.615850e-47 |
| Msa0757870 | Msa1145020 | 0.806433 | 8.245559e-50 | -8.615850e-47 |
| Msa0757870 | Msa1150970 | 0.800476 | 1.415918e-48 | -8.615850e-47 |
| Msa0757870 | Msa1166400 | 0.844641 | 6.665303e-59 | -8.615850e-47 |
| Msa0757870 | Msa1169990 | 0.839008 | 2.047953e-57 | -8.615850e-47 |
| Msa0757870 | Msa1201110 | 0.828771 | 7.469728e-55 | -8.615850e-47 |
| Msa0757870 | Msa1201160 | 0.805552 | 1.263518e-49 | -8.615850e-47 |
| Msa0757870 | Msa1272330 | 0.815754 | 7.862444e-52 | -8.615850e-47 |
| Msa0757870 | Msa1355400 | 0.846415 | 2.203292e-59 | -8.615850e-47 |
| Msa0757870 | Msa1365200 | 0.808808 | 2.581800e-50 | -8.615850e-47 |
| Msa0757870 | Msa1390310 | 0.808722 | 2.693198e-50 | -8.615850e-47 |
| Msa0757870 | Msa1398860 | 0.826649 | 2.415786e-54 | -8.615850e-47 |
| Msa0757870 | Msa1406040 | 0.816174 | 6.336050e-52 | -8.615850e-47 |
| Msa0757870 | Msa1408870 | 0.810170 | 1.316913e-50 | -8.615850e-47 |
| Msa0757870 | Msa1414930 | 0.811983 | 5.327101e-51 | -8.615850e-47 |
| Msa0757870 | Msa1420060 | 0.853146 | 2.897128e-61 | -8.615850e-47 |
| Msa0130010 | Msa0757870 | 0.806658 | 7.393118e-50 | -8.615850e-47 |
| Msa0132010 | Msa0757870 | 0.812411 | 4.297070e-51 | -8.615850e-47 |
| Msa0134130 | Msa0757870 | 0.836733 | 7.870606e-57 | -8.615850e-47 |
| Msa0137150 | Msa0757870 | 0.804055 | 2.596173e-49 | -8.615850e-47 |
| Msa0139900 | Msa0757870 | 0.807516 | 4.865841e-50 | -8.615850e-47 |
| Msa0145520 | Msa0757870 | 0.800180 | 1.626637e-48 | -8.615850e-47 |
| Msa0145600 | Msa0757870 | 0.801443 | 8.981634e-49 | -8.615850e-47 |
| Msa0161200 | Msa0757870 | 0.823904 | 1.077113e-53 | -8.615850e-47 |
| Msa0203160 | Msa0757870 | 0.800688 | 1.281660e-48 | -8.615850e-47 |
| Msa0219190 | Msa0757870 | 0.844896 | 5.692027e-59 | -8.615850e-47 |
| Msa0370600 | Msa0757870 | 0.840706 | 7.399865e-58 | -8.615850e-47 |
| Msa0408640 | Msa0757870 | 0.804117 | 2.519235e-49 | -8.615850e-47 |
| Msa0413930 | Msa0757870 | 0.807882 | 4.067328e-50 | -8.615850e-47 |
| Msa0418200 | Msa0757870 | 0.846602 | 1.958880e-59 | -8.615850e-47 |
| Msa0436500 | Msa0757870 | 0.813929 | 1.995982e-51 | -8.615850e-47 |
| Msa0444010 | Msa0757870 | 0.802645 | 5.085778e-49 | -8.615850e-47 |
| Msa0453520 | Msa0757870 | 0.817941 | 2.538875e-52 | -8.615850e-47 |
| Msa0464540 | Msa0757870 | 0.834415 | 3.037950e-56 | -8.615850e-47 |
| Msa0298240 | Msa0757870 | 0.851763 | 7.180628e-61 | -8.615850e-47 |
| Msa0336090 | Msa0757870 | 0.827614 | 1.419355e-54 | -8.615850e-47 |
| Msa0337850 | Msa0757870 | 0.824691 | 7.036255e-54 | -8.615850e-47 |
| Msa0537920 | Msa0757870 | 0.854041 | 1.602267e-61 | -8.615850e-47 |
| Msa0538220 | Msa0757870 | 0.887355 | 1.534459e-72 | -8.615850e-47 |
| Msa0543850 | Msa0757870 | 0.820960 | 5.204584e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757870 | MtrunA17_Chr5g0404141 | 95.597 | 318 | 6 | 1 | 1 | 310 | 1 | 318 | 0.0 | 620 |
| Msa0757870 | MtrunA17_Chr5g0404211 | 77.049 | 305 | 68 | 1 | 1 | 303 | 1 | 305 | 2.50e-177 | 492 |
| Msa0757870 | MtrunA17_Chr8g0373201 | 64.078 | 309 | 100 | 1 | 1 | 298 | 1 | 309 | 7.96e-146 | 412 |
| Msa0757870 | MtrunA17_Chr5g0404161 | 73.148 | 216 | 50 | 1 | 1 | 208 | 11 | 226 | 2.96e-111 | 322 |
| Msa0757870 | MtrunA17_Chr3g0136411 | 39.416 | 274 | 156 | 6 | 26 | 294 | 32 | 300 | 5.44e-61 | 196 |
| Msa0757870 | MtrunA17_Chr3g0123881 | 35.082 | 305 | 187 | 6 | 10 | 307 | 11 | 311 | 4.16e-54 | 179 |
| Msa0757870 | MtrunA17_Chr5g0404171 | 74.000 | 100 | 26 | 0 | 209 | 308 | 1 | 100 | 5.01e-52 | 166 |
| Msa0757870 | MtrunA17_Chr2g0279171 | 31.802 | 283 | 181 | 7 | 18 | 294 | 25 | 301 | 1.82e-46 | 159 |
| Msa0757870 | MtrunA17_Chr5g0426241 | 31.579 | 285 | 178 | 6 | 19 | 294 | 22 | 298 | 9.55e-46 | 157 |
| Msa0757870 | MtrunA17_Chr8g0382001 | 38.462 | 117 | 68 | 1 | 20 | 136 | 23 | 135 | 4.72e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757870 | AT2G18360.1 | 55.340 | 309 | 126 | 1 | 1 | 297 | 1 | 309 | 8.94e-129 | 370 |
| Msa0757870 | AT4G36610.1 | 52.885 | 312 | 137 | 1 | 1 | 302 | 1 | 312 | 2.56e-120 | 348 |
| Msa0757870 | AT2G18360.2 | 52.941 | 272 | 116 | 1 | 1 | 260 | 1 | 272 | 1.36e-105 | 309 |
| Msa0757870 | AT5G21950.1 | 35.484 | 279 | 177 | 3 | 19 | 294 | 23 | 301 | 2.83e-57 | 187 |
| Msa0757870 | AT5G21950.6 | 35.484 | 279 | 177 | 3 | 19 | 294 | 75 | 353 | 1.34e-56 | 187 |
| Msa0757870 | AT1G78210.1 | 34.859 | 284 | 177 | 5 | 17 | 294 | 20 | 301 | 1.34e-51 | 172 |
| Msa0757870 | AT4G33180.1 | 32.394 | 284 | 187 | 4 | 16 | 294 | 21 | 304 | 1.30e-50 | 170 |
| Msa0757870 | AT4G39955.1 | 35.235 | 298 | 176 | 7 | 19 | 307 | 22 | 311 | 2.67e-50 | 169 |
| Msa0757870 | AT5G21950.7 | 35.510 | 245 | 155 | 3 | 19 | 260 | 23 | 267 | 1.46e-49 | 166 |
| Msa0757870 | AT5G09430.1 | 31.379 | 290 | 175 | 8 | 19 | 294 | 28 | 307 | 2.17e-42 | 149 |
| Msa0757870 | AT1G72620.1 | 31.250 | 288 | 178 | 10 | 21 | 297 | 56 | 334 | 4.71e-40 | 143 |
| Msa0757870 | AT1G17430.1 | 30.928 | 291 | 175 | 10 | 21 | 296 | 52 | 331 | 1.00e-38 | 139 |
| Msa0757870 | AT5G21950.3 | 35.233 | 193 | 124 | 1 | 19 | 210 | 23 | 215 | 1.66e-36 | 130 |
| Msa0757870 | AT5G21950.2 | 35.233 | 193 | 124 | 1 | 19 | 210 | 23 | 215 | 1.66e-36 | 130 |
| Msa0757870 | AT5G21950.5 | 35.233 | 193 | 124 | 1 | 19 | 210 | 75 | 267 | 5.87e-36 | 130 |
| Msa0757870 | AT5G21950.4 | 35.233 | 193 | 124 | 1 | 19 | 210 | 75 | 267 | 5.87e-36 | 130 |
| Msa0757870 | AT4G33180.2 | 32.143 | 196 | 130 | 2 | 16 | 208 | 21 | 216 | 1.50e-32 | 120 |
Find 90 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACCTGCGAAAATTT+TGG | 0.091229 | 5_2:-12889607 | None:intergenic |
| CTTACAAACAAGCGCTTAAT+TGG | 0.169401 | 5_2:-12890175 | None:intergenic |
| CAGGTACAGTTATGAGATTT+TGG | 0.234420 | 5_2:+12885627 | Msa0757870:CDS |
| TGAACACGGTGAACGTAATT+TGG | 0.258916 | 5_2:+12885543 | Msa0757870:CDS |
| ATAGCATTTATATTAGCTTT+TGG | 0.275164 | 5_2:-12890218 | None:intergenic |
| AGTAGTATATTTATAATATC+TGG | 0.309196 | 5_2:+12890243 | Msa0757870:three_prime_UTR |
| GAATATGCCAACGGTGTCTT+TGG | 0.318807 | 5_2:+12890119 | Msa0757870:three_prime_UTR |
| AGCGACCATGTGTTTATAAT+AGG | 0.329987 | 5_2:+12889996 | Msa0757870:CDS |
| TCATCAAGCATAATATGAAT+TGG | 0.356245 | 5_2:-12890068 | None:intergenic |
| GCATATTCATTGATATGAAC+TGG | 0.358339 | 5_2:-12890104 | None:intergenic |
| CAATGACCGGTCCGTCTTAT+CGG | 0.366913 | 5_2:-12885840 | None:intergenic |
| GGTAGTAAGTGGTGCAGTTT+TGG | 0.371501 | 5_2:+12885997 | Msa0757870:CDS |
| TCTCATCAAGGACTTTCTTA+AGG | 0.375056 | 5_2:+12886162 | Msa0757870:CDS |
| TCAAGCCGAGTGCTTGGCGG+TGG | 0.379391 | 5_2:+12885868 | Msa0757870:CDS |
| GACTTGGAAATGGTGTTAGA+AGG | 0.380475 | 5_2:-12885653 | None:intergenic |
| TGCTGGATTCTCTTCTTGTT+CGG | 0.380760 | 5_2:+12886057 | Msa0757870:CDS |
| CCTTAAGCAATTTCTTGCTT+CGG | 0.386650 | 5_2:+12890021 | Msa0757870:CDS |
| CTCCACGGCTTCTGCGGTGA+TGG | 0.387211 | 5_2:+12885728 | Msa0757870:CDS |
| TGGAATGGTGGCGTTTAAAA+TGG | 0.401285 | 5_2:+12885943 | Msa0757870:CDS |
| GATACATATTTACAGGAAGC+TGG | 0.411250 | 5_2:+12889919 | Msa0757870:intron |
| TTAATGCCATCTTCTGTTGA+AGG | 0.421465 | 5_2:+12886085 | Msa0757870:CDS |
| CAAGCCGAGTGCTTGGCGGT+GGG | 0.422769 | 5_2:+12885869 | Msa0757870:CDS |
| TAATTTGGACACTGGTTAGT+TGG | 0.431991 | 5_2:+12885558 | Msa0757870:CDS |
| AAAATGGCTGAGATGTATAG+TGG | 0.456525 | 5_2:+12885959 | Msa0757870:CDS |
| CGATAAGACGGACCGGTCAT+TGG | 0.462509 | 5_2:+12885841 | Msa0757870:CDS |
| TGCAGGTGATGTTCTCAAAT+CGG | 0.466616 | 5_2:+12889527 | Msa0757870:intron |
| TGGATTCAGTTATGGTGGAA+TGG | 0.487428 | 5_2:+12885928 | Msa0757870:CDS |
| GCAGCGAATACATCTTCTGT+GGG | 0.489370 | 5_2:+12889764 | Msa0757870:intron |
| TTCACTCCTTCAACAGAAGA+TGG | 0.491079 | 5_2:-12886091 | None:intergenic |
| GTGAAGACACTTCTTTCTGT+TGG | 0.492067 | 5_2:+12886109 | Msa0757870:CDS |
| CCGAAGCAAGAAATTGCTTA+AGG | 0.494759 | 5_2:-12890021 | None:intergenic |
| AGTAAGGCAGTTGAAGATGC+TGG | 0.497607 | 5_2:+12886040 | Msa0757870:CDS |
| AGTTGGGTAGTGAAGATGGC+AGG | 0.500162 | 5_2:+12885575 | Msa0757870:CDS |
| GGTTAGTTGGGTAGTGAAGA+TGG | 0.500320 | 5_2:+12885571 | Msa0757870:CDS |
| GTGGAGAAATGTGTTGTGGT+TGG | 0.502378 | 5_2:+12885908 | Msa0757870:CDS |
| AAGTCCTTGATGAGACGGTT+GGG | 0.503284 | 5_2:-12886154 | None:intergenic |
| AAAGGAGTCTATGATTAGTA+AGG | 0.505701 | 5_2:+12886024 | Msa0757870:CDS |
| GTTGTGGTTGGATTCAGTTA+TGG | 0.507297 | 5_2:+12885920 | Msa0757870:CDS |
| CAAAATCTCATAACTGTACC+TGG | 0.509625 | 5_2:-12885626 | None:intergenic |
| GAGAACCACTACTGGCTTCG+TGG | 0.511337 | 5_2:-12885705 | None:intergenic |
| TTGATGAGACGGTTGGGAAA+CGG | 0.512140 | 5_2:-12886148 | None:intergenic |
| AATTTGGACACTGGTTAGTT+GGG | 0.512586 | 5_2:+12885559 | Msa0757870:CDS |
| GATAAAGAAGGCTGGCCACT+TGG | 0.513619 | 5_2:+12889964 | Msa0757870:CDS |
| ATACATATTTACAGGAAGCT+GGG | 0.518388 | 5_2:+12889920 | Msa0757870:intron |
| AAAATACGCTGTTTATGTAC+CGG | 0.520843 | 5_2:+12885790 | Msa0757870:CDS |
| GTCCATCACCGCAGAAGCCG+TGG | 0.529252 | 5_2:-12885730 | None:intergenic |
| GTCTTTGTAGCTAATGACTA+AGG | 0.531626 | 5_2:-12889575 | None:intergenic |
| TGCAGCGAATACATCTTCTG+TGG | 0.532773 | 5_2:+12889763 | Msa0757870:intron |
| GTTTCCCAACCGTCTCATCA+AGG | 0.533356 | 5_2:+12886150 | Msa0757870:CDS |
| CGGTGGGGTTAAAGAAACTC+GGG | 0.534386 | 5_2:+12885885 | Msa0757870:CDS |
| AAAGTCCTTGATGAGACGGT+TGG | 0.534634 | 5_2:-12886155 | None:intergenic |
| GTGGTTGGATTCAGTTATGG+TGG | 0.535201 | 5_2:+12885923 | Msa0757870:CDS |
| AGAACCACTACTGGCTTCGT+GGG | 0.537427 | 5_2:-12885704 | None:intergenic |
| GCGGTGATGGACTAGCTACT+TGG | 0.547477 | 5_2:+12885741 | Msa0757870:CDS |
| CCGTGGAGGAGAACCACTAC+TGG | 0.555092 | 5_2:-12885713 | None:intergenic |
| GTTCTCCTCCACGGCTTCTG+CGG | 0.558623 | 5_2:+12885722 | Msa0757870:CDS |
| AAGCCGAGTGCTTGGCGGTG+GGG | 0.563288 | 5_2:+12885870 | Msa0757870:CDS |
| CGGCTTGAAAAGCCAATGAC+CGG | 0.568948 | 5_2:-12885853 | None:intergenic |
| AACATTACAAGAGATAAAGA+AGG | 0.574716 | 5_2:+12889952 | Msa0757870:CDS |
| GTTCAAGCCGTGGTAGTAAG+TGG | 0.575800 | 5_2:+12885986 | Msa0757870:CDS |
| CCACCAAAGAAAATTAAGTC+CGG | 0.578036 | 5_2:-12885809 | None:intergenic |
| TTACAAGAGATAAAGAAGGC+TGG | 0.588072 | 5_2:+12889956 | Msa0757870:CDS |
| TAAGAAAGTCCTTGATGAGA+CGG | 0.588220 | 5_2:-12886159 | None:intergenic |
| GGTGAACGTAATTTGGACAC+TGG | 0.590468 | 5_2:+12885550 | Msa0757870:CDS |
| GCGGTGGGGTTAAAGAAACT+CGG | 0.594063 | 5_2:+12885884 | Msa0757870:CDS |
| TAACCCCACCGCCAAGCACT+CGG | 0.595539 | 5_2:-12885873 | None:intergenic |
| TAGTGGGTTGGTTCAAGCCG+TGG | 0.596910 | 5_2:+12885976 | Msa0757870:CDS |
| ATAATCAAACATGGTGAACA+CGG | 0.596997 | 5_2:+12885529 | Msa0757870:exon |
| AACTGCACCACTTACTACCA+CGG | 0.603216 | 5_2:-12885993 | None:intergenic |
| CAAACAAATATAATCAAACA+TGG | 0.604116 | 5_2:+12885520 | Msa0757870:exon |
| GGCTGAGATGTATAGTGGGT+TGG | 0.606775 | 5_2:+12885964 | Msa0757870:CDS |
| CAAACCCACGAAGCCAGTAG+TGG | 0.619279 | 5_2:+12885700 | Msa0757870:intron |
| TGGCTCAACCACCGATAAGA+CGG | 0.620981 | 5_2:+12885829 | Msa0757870:CDS |
| TACACAGTAGAGATAGAACC+AGG | 0.622207 | 5_2:+12885608 | Msa0757870:CDS |
| GGTGGGGTTAAAGAAACTCG+GGG | 0.622939 | 5_2:+12885886 | Msa0757870:CDS |
| CCAGTAGTGGTTCTCCTCCA+CGG | 0.624688 | 5_2:+12885713 | Msa0757870:CDS |
| GGTGATGTTCTCAAATCGGA+AGG | 0.625620 | 5_2:+12889531 | Msa0757870:intron |
| TGACCGGTCCGTCTTATCGG+TGG | 0.636640 | 5_2:-12885837 | None:intergenic |
| CATATCAATGAATATGCCAA+CGG | 0.636748 | 5_2:+12890110 | Msa0757870:three_prime_UTR |
| AAATGGCTGAGATGTATAGT+GGG | 0.642705 | 5_2:+12885960 | Msa0757870:CDS |
| CATCACCGCAGAAGCCGTGG+AGG | 0.648231 | 5_2:-12885727 | None:intergenic |
| GAACTTACCAAAGACACCGT+TGG | 0.648790 | 5_2:-12890126 | None:intergenic |
| CAACCACCGATAAGACGGAC+CGG | 0.649108 | 5_2:+12885834 | Msa0757870:CDS |
| CGGGGTGGAGAAATGTGTTG+TGG | 0.661435 | 5_2:+12885904 | Msa0757870:CDS |
| ATTCAGTTATGGTGGAATGG+TGG | 0.669440 | 5_2:+12885931 | Msa0757870:CDS |
| TTGTTTGTAAGTTATTGTTG+TGG | 0.687543 | 5_2:+12890187 | Msa0757870:three_prime_UTR |
| AGGCACCTATTATAAACACA+TGG | 0.694510 | 5_2:-12890001 | None:intergenic |
| GTCGCTCAATATGAGCCAAG+TGG | 0.710691 | 5_2:-12889979 | None:intergenic |
| CAGCGAATACATCTTCTGTG+GGG | 0.727762 | 5_2:+12889765 | Msa0757870:intron |
| GGGGTTAAAGAAACTCGGGG+TGG | 0.739841 | 5_2:+12885889 | Msa0757870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATATAAAATTATCAAA+AGG | - | chr5_2:12886386-12886405 | None:intergenic | 10.0% |
| !! | TAAATAGCAATAAATATAAA+AGG | + | chr5_2:12886448-12886467 | Msa0757870:intron | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | + | chr5_2:12886998-12887017 | Msa0757870:intron | 10.0% |
| !! | AAAAAATTGAAAAAATTCAT+GGG | + | chr5_2:12887312-12887331 | Msa0757870:intron | 10.0% |
| !! | TGTTATACTAAAAAAATTAA+GGG | - | chr5_2:12888336-12888355 | None:intergenic | 10.0% |
| !! | TTGTTATACTAAAAAAATTA+AGG | - | chr5_2:12888337-12888356 | None:intergenic | 10.0% |
| !!! | ATTAATATATTTTTTTTGTC+AGG | - | chr5_2:12889038-12889057 | None:intergenic | 10.0% |
| !!! | CACTTTATTATTATTTTTTA+TGG | + | chr5_2:12889647-12889666 | Msa0757870:intron | 10.0% |
| !! | TAAAAGGTAAAAATATTGTA+TGG | + | chr5_2:12886464-12886483 | Msa0757870:intron | 15.0% |
| !! | AAAAGGTAAAAATATTGTAT+GGG | + | chr5_2:12886465-12886484 | Msa0757870:intron | 15.0% |
| !! | TAAATATGTTCATAAGATAT+AGG | - | chr5_2:12886695-12886714 | None:intergenic | 15.0% |
| !!! | ACTTTTTTCTTAAATAAAGA+AGG | - | chr5_2:12887105-12887124 | None:intergenic | 15.0% |
| !! | GAAAAAATTGAAAAAATTCA+TGG | + | chr5_2:12887311-12887330 | Msa0757870:intron | 15.0% |
| !! | AAAAATTGAAAAAATTCATG+GGG | + | chr5_2:12887313-12887332 | Msa0757870:intron | 15.0% |
| !!! | AATTGAAATTTTGTTAATGT+CGG | + | chr5_2:12887557-12887576 | Msa0757870:intron | 15.0% |
| !! | ATCTATGAAATATTTGAAAA+TGG | + | chr5_2:12888081-12888100 | Msa0757870:intron | 15.0% |
| !! | ATTATTTGTGTGTTTAATAT+TGG | + | chr5_2:12888439-12888458 | Msa0757870:intron | 15.0% |
| !! | TTATTTGTGTGTTTAATATT+GGG | + | chr5_2:12888440-12888459 | Msa0757870:intron | 15.0% |
| !!! | TAAAATTAAAACATGTGTTT+TGG | - | chr5_2:12889705-12889724 | None:intergenic | 15.0% |
| !! | AGTAGTATATTTATAATATC+TGG | + | chr5_2:12890243-12890262 | Msa0757870:three_prime_UTR | 15.0% |
| !! | CAAACAAATATAATCAAACA+TGG | + | chr5_2:12885520-12885539 | Msa0757870:exon | 20.0% |
| !! | TCACTTAAAAAGTTTATTTG+TGG | + | chr5_2:12886308-12886327 | Msa0757870:intron | 20.0% |
| !! | TTATTTGTGGATTTAAATGA+AGG | + | chr5_2:12886321-12886340 | Msa0757870:intron | 20.0% |
| !! | ATGATTATAACAAATACAGA+TGG | + | chr5_2:12886512-12886531 | Msa0757870:intron | 20.0% |
| !! | TGATTATAACAAATACAGAT+GGG | + | chr5_2:12886513-12886532 | Msa0757870:intron | 20.0% |
| !!! | ACTTAGGCTTTAAAAAAATA+TGG | - | chr5_2:12886585-12886604 | None:intergenic | 20.0% |
| !!! | CAATGTGATTTAAGTTTAAA+TGG | + | chr5_2:12886751-12886770 | Msa0757870:intron | 20.0% |
| !! | TTCATATTACTTAAATAGGT+CGG | + | chr5_2:12887002-12887021 | Msa0757870:intron | 20.0% |
| !!! | CTTTATTTAAGAAAAAAGTC+TGG | + | chr5_2:12887106-12887125 | Msa0757870:intron | 20.0% |
| !! | AATTGAAAAAAATACATGTG+CGG | + | chr5_2:12887436-12887455 | Msa0757870:intron | 20.0% |
| !! | TAGATAGAAAAAAAAGAAAG+AGG | + | chr5_2:12888129-12888148 | Msa0757870:intron | 20.0% |
| !! | AGATAGAAAAAAAAGAAAGA+GGG | + | chr5_2:12888130-12888149 | Msa0757870:intron | 20.0% |
| !! | CATAAATAAAGCATATTACT+GGG | - | chr5_2:12888250-12888269 | None:intergenic | 20.0% |
| !! | ACATAAATAAAGCATATTAC+TGG | - | chr5_2:12888251-12888270 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTAATCATGCATT+TGG | + | chr5_2:12888414-12888433 | Msa0757870:intron | 20.0% |
| !! | TAAAAAAAAAAGCAACTGAA+TGG | - | chr5_2:12888584-12888603 | None:intergenic | 20.0% |
| !!! | TTCAGTTGCTTTTTTTTTTA+AGG | + | chr5_2:12888584-12888603 | Msa0757870:intron | 20.0% |
| !! | CTATAGTCTCTATAAATAAA+AGG | - | chr5_2:12888713-12888732 | None:intergenic | 20.0% |
| !!! | CAATTAAGTTTGTTATTTAG+CGG | - | chr5_2:12888937-12888956 | None:intergenic | 20.0% |
| !! | ATCAAAAATTTCTCAAGAAA+AGG | - | chr5_2:12888967-12888986 | None:intergenic | 20.0% |
| !!! | AGAATTTTAACGAAAATTCT+TGG | + | chr5_2:12889268-12889287 | Msa0757870:intron | 20.0% |
| !!! | GAATTTTAACGAAAATTCTT+GGG | + | chr5_2:12889269-12889288 | Msa0757870:intron | 20.0% |
| !! | GTAGATCTCTTTAATAAAAA+GGG | - | chr5_2:12889318-12889337 | None:intergenic | 20.0% |
| !! | TGTAGATCTCTTTAATAAAA+AGG | - | chr5_2:12889319-12889338 | None:intergenic | 20.0% |
| !! | AACATATAATAATTCCTCAT+AGG | + | chr5_2:12889460-12889479 | Msa0757870:intron | 20.0% |
| !! | TTGCATATAAAATTTCAGAA+TGG | - | chr5_2:12889877-12889896 | None:intergenic | 20.0% |
| !!! | ATAGCATTTATATTAGCTTT+TGG | - | chr5_2:12890221-12890240 | None:intergenic | 20.0% |
| !!! | TACATAAACAGCGTATTTTT+TGG | - | chr5_2:12885789-12885808 | None:intergenic | 25.0% |
| !! | ATCAAAAGGTAAGTTTTTGT+AGG | - | chr5_2:12886372-12886391 | None:intergenic | 25.0% |
| !! | TAAGATATAGGCTTTTAAAC+AGG | - | chr5_2:12886683-12886702 | None:intergenic | 25.0% |
| !!! | CTCTTTTGATAATTAACACA+AGG | + | chr5_2:12886807-12886826 | Msa0757870:intron | 25.0% |
| ! | TTAAGCTTATTGAGCTTAAA+AGG | - | chr5_2:12887070-12887089 | None:intergenic | 25.0% |
| !! | TTCTTAAATAAAGAAGGCAT+AGG | - | chr5_2:12887099-12887118 | None:intergenic | 25.0% |
| ! | TACATACGACTATATTTCAT+GGG | + | chr5_2:12887195-12887214 | Msa0757870:intron | 25.0% |
| ! | ATTGACGAAACTTACAATTT+CGG | + | chr5_2:12887587-12887606 | Msa0757870:intron | 25.0% |
| ! | ATTACAATACTTCTTGTCTT+TGG | + | chr5_2:12887668-12887687 | Msa0757870:intron | 25.0% |
| ! | TAAACAAATGTTCTTCGTTT+CGG | - | chr5_2:12887940-12887959 | None:intergenic | 25.0% |
| !! | CAAATTTTCCTGTAGTAATT+TGG | - | chr5_2:12888780-12888799 | None:intergenic | 25.0% |
| ! | CAAATTACTACAGGAAAATT+TGG | + | chr5_2:12888778-12888797 | Msa0757870:intron | 25.0% |
| ! | TGATCACGCATATATATTTA+TGG | - | chr5_2:12888808-12888827 | None:intergenic | 25.0% |
| ! | AATGGTGTGTAATTAAGTAA+AGG | - | chr5_2:12888900-12888919 | None:intergenic | 25.0% |
| ! | CGCTAAATAACAAACTTAAT+TGG | + | chr5_2:12888935-12888954 | Msa0757870:intron | 25.0% |
| ! | GACTAATTAATTAGTGTCAA+AGG | + | chr5_2:12889110-12889129 | Msa0757870:intron | 25.0% |
| !! | CTATAAATAGATGTGCATTT+TGG | + | chr5_2:12889169-12889188 | Msa0757870:intron | 25.0% |
| ! | GTAAAATTGTTAACGAAGTT+TGG | - | chr5_2:12889368-12889387 | None:intergenic | 25.0% |
| ! | ATATGTTGCTCACAAAAATA+AGG | - | chr5_2:12889500-12889519 | None:intergenic | 25.0% |
| !! | AAATTACCTGCGAAAATTTT+GGG | - | chr5_2:12889609-12889628 | None:intergenic | 25.0% |
| !! | AAAATTACCTGCGAAAATTT+TGG | - | chr5_2:12889610-12889629 | None:intergenic | 25.0% |
| !! | TTTTATATGCAATTGATCTG+TGG | + | chr5_2:12889885-12889904 | Msa0757870:intron | 25.0% |
| ! | AGTGTTTGATACATATTTAC+AGG | + | chr5_2:12889912-12889931 | Msa0757870:intron | 25.0% |
| ! | AACATTACAAGAGATAAAGA+AGG | + | chr5_2:12889952-12889971 | Msa0757870:CDS | 25.0% |
| ! | TCATCAAGCATAATATGAAT+TGG | - | chr5_2:12890071-12890090 | None:intergenic | 25.0% |
| ! | TTGTTTGTAAGTTATTGTTG+TGG | + | chr5_2:12890187-12890206 | Msa0757870:three_prime_UTR | 25.0% |
| ATAATCAAACATGGTGAACA+CGG | + | chr5_2:12885529-12885548 | Msa0757870:exon | 30.0% | |
| ! | AGGTACAGTTATGAGATTTT+GGG | + | chr5_2:12885628-12885647 | Msa0757870:CDS | 30.0% |
| !!! | TTTTAGTTTGGACTTGGAAA+TGG | - | chr5_2:12885666-12885685 | None:intergenic | 30.0% |
| AAAATACGCTGTTTATGTAC+CGG | + | chr5_2:12885790-12885809 | Msa0757870:CDS | 30.0% | |
| AAAGGAGTCTATGATTAGTA+AGG | + | chr5_2:12886024-12886043 | Msa0757870:CDS | 30.0% | |
| TAACAAATACAGATGGGAAT+AGG | + | chr5_2:12886519-12886538 | Msa0757870:intron | 30.0% | |
| !! | AGGCTTTAAAAAAATATGGC+AGG | - | chr5_2:12886581-12886600 | None:intergenic | 30.0% |
| CTACATACGACTATATTTCA+TGG | + | chr5_2:12887194-12887213 | Msa0757870:intron | 30.0% | |
| ACATACGACTATATTTCATG+GGG | + | chr5_2:12887196-12887215 | Msa0757870:intron | 30.0% | |
| AATTCATCTGTTAGTCAACA+TGG | - | chr5_2:12887493-12887512 | None:intergenic | 30.0% | |
| TGACTAACAGATGAATTTGA+CGG | + | chr5_2:12887496-12887515 | Msa0757870:intron | 30.0% | |
| ACTTAACGTTATGCAATTTC+TGG | + | chr5_2:12887530-12887549 | Msa0757870:intron | 30.0% | |
| ! | AAATTTTGTTAATGTCGGAG+AGG | + | chr5_2:12887562-12887581 | Msa0757870:intron | 30.0% |
| GCAATTCACTTAGTGTAAAT+AGG | - | chr5_2:12887619-12887638 | None:intergenic | 30.0% | |
| GAAGCTTGAAAATAAACACA+TGG | + | chr5_2:12887780-12887799 | Msa0757870:intron | 30.0% | |
| TGAAAATAAACACATGGTAC+AGG | + | chr5_2:12887786-12887805 | Msa0757870:intron | 30.0% | |
| !! | AAATTTTGATCCATAGAGTG+AGG | + | chr5_2:12887895-12887914 | Msa0757870:intron | 30.0% |
| !! | AATTTTGATCCATAGAGTGA+GGG | + | chr5_2:12887896-12887915 | Msa0757870:intron | 30.0% |
| AATAAGACATACGACTAATC+AGG | + | chr5_2:12888163-12888182 | Msa0757870:intron | 30.0% | |
| ATAAGACATACGACTAATCA+GGG | + | chr5_2:12888164-12888183 | Msa0757870:intron | 30.0% | |
| !! | TAAAAAAATTAAGGGCGTCA+TGG | - | chr5_2:12888328-12888347 | None:intergenic | 30.0% |
| !!! | CTAGGTACATGTGATTTTTT+CGG | - | chr5_2:12888499-12888518 | None:intergenic | 30.0% |
| ! | GATTTTCAAAAGCAACTGAA+TGG | - | chr5_2:12888611-12888630 | None:intergenic | 30.0% |
| TAGTCATAGTCTCTATTGTT+TGG | - | chr5_2:12888747-12888766 | None:intergenic | 30.0% | |
| ! | TTTTCCTGTAGTAATTTGGA+CGG | - | chr5_2:12888776-12888795 | None:intergenic | 30.0% |
| ! | TGTTATTTAGCGGAAATCAA+GGG | - | chr5_2:12888927-12888946 | None:intergenic | 30.0% |
| !! | TTGTTATTTAGCGGAAATCA+AGG | - | chr5_2:12888928-12888947 | None:intergenic | 30.0% |
| CACTAATTAATTAGTCACAG+TGG | - | chr5_2:12889106-12889125 | None:intergenic | 30.0% | |
| ! | AAATAGATGTGCATTTTGGA+AGG | + | chr5_2:12889173-12889192 | Msa0757870:intron | 30.0% |
| AAGTGGAAGTGAAATAAATG+CGG | - | chr5_2:12889406-12889425 | None:intergenic | 30.0% | |
| !!! | TCGGTTTTTTTATACCTATG+AGG | - | chr5_2:12889477-12889496 | None:intergenic | 30.0% |
| AGCAACATATCATTAATTGC+AGG | + | chr5_2:12889510-12889529 | Msa0757870:intron | 30.0% | |
| ATACATATTTACAGGAAGCT+GGG | + | chr5_2:12889920-12889939 | Msa0757870:intron | 30.0% | |
| GCATATTCATTGATATGAAC+TGG | - | chr5_2:12890107-12890126 | None:intergenic | 30.0% | |
| CATATCAATGAATATGCCAA+CGG | + | chr5_2:12890110-12890129 | Msa0757870:three_prime_UTR | 30.0% | |
| ! | TAATTTGGACACTGGTTAGT+TGG | + | chr5_2:12885558-12885577 | Msa0757870:CDS | 35.0% |
| ! | AATTTGGACACTGGTTAGTT+GGG | + | chr5_2:12885559-12885578 | Msa0757870:CDS | 35.0% |
| CAAAATCTCATAACTGTACC+TGG | - | chr5_2:12885629-12885648 | None:intergenic | 35.0% | |
| ! | CAGGTACAGTTATGAGATTT+TGG | + | chr5_2:12885627-12885646 | Msa0757870:CDS | 35.0% |
| !!! | TTTGGGTTTTAGTTTGGACT+TGG | - | chr5_2:12885672-12885691 | None:intergenic | 35.0% |
| !!! | TATGGGTTTGGGTTTTAGTT+TGG | - | chr5_2:12885678-12885697 | None:intergenic | 35.0% |
| !! | TTTTGGCTAAAGGGTTGATT+TGG | - | chr5_2:12885772-12885791 | None:intergenic | 35.0% |
| !!! | CAGCGTATTTTTTGGCTAAA+GGG | - | chr5_2:12885781-12885800 | None:intergenic | 35.0% |
| !!! | ACAGCGTATTTTTTGGCTAA+AGG | - | chr5_2:12885782-12885801 | None:intergenic | 35.0% |
| ! | GTACCGGACTTAATTTTCTT+TGG | + | chr5_2:12885806-12885825 | Msa0757870:CDS | 35.0% |
| CCACCAAAGAAAATTAAGTC+CGG | - | chr5_2:12885812-12885831 | None:intergenic | 35.0% | |
| AAAATGGCTGAGATGTATAG+TGG | + | chr5_2:12885959-12885978 | Msa0757870:CDS | 35.0% | |
| AAATGGCTGAGATGTATAGT+GGG | + | chr5_2:12885960-12885979 | Msa0757870:CDS | 35.0% | |
| TTAATGCCATCTTCTGTTGA+AGG | + | chr5_2:12886085-12886104 | Msa0757870:CDS | 35.0% | |
| TAAGAAAGTCCTTGATGAGA+CGG | - | chr5_2:12886162-12886181 | None:intergenic | 35.0% | |
| TCTCATCAAGGACTTTCTTA+AGG | + | chr5_2:12886162-12886181 | Msa0757870:CDS | 35.0% | |
| TGTGGATTTAAATGAAGGAC+CGG | + | chr5_2:12886326-12886345 | Msa0757870:intron | 35.0% | |
| GAACTAATCATTGAGCTATC+CGG | - | chr5_2:12886348-12886367 | None:intergenic | 35.0% | |
| AATACAGATGGGAATAGGTT+AGG | + | chr5_2:12886524-12886543 | Msa0757870:intron | 35.0% | |
| CTAAAAAGTAGGTCTATGAC+AGG | - | chr5_2:12886619-12886638 | None:intergenic | 35.0% | |
| !!! | CTGTCATAGACCTACTTTTT+AGG | + | chr5_2:12886617-12886636 | Msa0757870:intron | 35.0% |
| AAAAGCCTCTTAAGCCTATT+AGG | - | chr5_2:12887028-12887047 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGTCTGGCC+TGG | + | chr5_2:12887111-12887130 | Msa0757870:intron | 35.0% | |
| ATATAGTCGTATGTAGCGAT+GGG | - | chr5_2:12887190-12887209 | None:intergenic | 35.0% | |
| AATATAGTCGTATGTAGCGA+TGG | - | chr5_2:12887191-12887210 | None:intergenic | 35.0% | |
| TAACAGATGAATTTGACGGA+GGG | + | chr5_2:12887500-12887519 | Msa0757870:intron | 35.0% | |
| ACGAAACTTACAATTTCGGA+GGG | + | chr5_2:12887591-12887610 | Msa0757870:intron | 35.0% | |
| AACACTGTTTGGCTATTGAA+AGG | - | chr5_2:12887720-12887739 | None:intergenic | 35.0% | |
| ATGCATGCTATAACACTGTT+TGG | - | chr5_2:12887731-12887750 | None:intergenic | 35.0% | |
| TTATAGCATGCATGCTGTAT+AGG | + | chr5_2:12887738-12887757 | Msa0757870:intron | 35.0% | |
| TAAGACATACGACTAATCAG+GGG | + | chr5_2:12888165-12888184 | Msa0757870:intron | 35.0% | |
| GGCATAAATTTGAAAACCCA+GGG | - | chr5_2:12888229-12888248 | None:intergenic | 35.0% | |
| GGTGCAACATTAAAACTTCA+TGG | - | chr5_2:12888282-12888301 | None:intergenic | 35.0% | |
| GTCGAAAGTAAAAAGCAACA+AGG | - | chr5_2:12888387-12888406 | None:intergenic | 35.0% | |
| TCTAAGTCATGAGTTCAAGA+AGG | - | chr5_2:12888529-12888548 | None:intergenic | 35.0% | |
| TCATAGTCTCTATTGTTTGG+TGG | - | chr5_2:12888744-12888763 | None:intergenic | 35.0% | |
| GTCCGAAGAGTAGATATTAT+TGG | + | chr5_2:12889342-12889361 | Msa0757870:intron | 35.0% | |
| GGCCAATAATATCTACTCTT+CGG | - | chr5_2:12889347-12889366 | None:intergenic | 35.0% | |
| ACTTCCACTTAATCTGACTA+TGG | + | chr5_2:12889416-12889435 | Msa0757870:intron | 35.0% | |
| TTCTCCATAGTCAGATTAAG+TGG | - | chr5_2:12889423-12889442 | None:intergenic | 35.0% | |
| GTTGCTCACAAAAATAAGGT+CGG | - | chr5_2:12889496-12889515 | None:intergenic | 35.0% | |
| GTCTTTGTAGCTAATGACTA+AGG | - | chr5_2:12889578-12889597 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGAACATAGAACA+TGG | - | chr5_2:12889691-12889710 | None:intergenic | 35.0% |
| GATACATATTTACAGGAAGC+TGG | + | chr5_2:12889919-12889938 | Msa0757870:intron | 35.0% | |
| TTACAAGAGATAAAGAAGGC+TGG | + | chr5_2:12889956-12889975 | Msa0757870:CDS | 35.0% | |
| AGCGACCATGTGTTTATAAT+AGG | + | chr5_2:12889996-12890015 | Msa0757870:CDS | 35.0% | |
| AGGCACCTATTATAAACACA+TGG | - | chr5_2:12890004-12890023 | None:intergenic | 35.0% | |
| CCTTAAGCAATTTCTTGCTT+CGG | + | chr5_2:12890021-12890040 | Msa0757870:CDS | 35.0% | |
| CTTACAAACAAGCGCTTAAT+TGG | - | chr5_2:12890178-12890197 | None:intergenic | 35.0% | |
| TGAACACGGTGAACGTAATT+TGG | + | chr5_2:12885543-12885562 | Msa0757870:CDS | 40.0% | |
| TACACAGTAGAGATAGAACC+AGG | + | chr5_2:12885608-12885627 | Msa0757870:CDS | 40.0% | |
| ! | GACTTGGAAATGGTGTTAGA+AGG | - | chr5_2:12885656-12885675 | None:intergenic | 40.0% |
| ! | CCGGACTTAATTTTCTTTGG+TGG | + | chr5_2:12885809-12885828 | Msa0757870:CDS | 40.0% |
| GTTGTGGTTGGATTCAGTTA+TGG | + | chr5_2:12885920-12885939 | Msa0757870:CDS | 40.0% | |
| ! | TGGATTCAGTTATGGTGGAA+TGG | + | chr5_2:12885928-12885947 | Msa0757870:CDS | 40.0% |
| ! | ATTCAGTTATGGTGGAATGG+TGG | + | chr5_2:12885931-12885950 | Msa0757870:CDS | 40.0% |
| ! | TGGAATGGTGGCGTTTAAAA+TGG | + | chr5_2:12885943-12885962 | Msa0757870:CDS | 40.0% |
| TGCTGGATTCTCTTCTTGTT+CGG | + | chr5_2:12886057-12886076 | Msa0757870:CDS | 40.0% | |
| TTCACTCCTTCAACAGAAGA+TGG | - | chr5_2:12886094-12886113 | None:intergenic | 40.0% | |
| GTGAAGACACTTCTTTCTGT+TGG | + | chr5_2:12886109-12886128 | Msa0757870:CDS | 40.0% | |
| AAATATGGCAGGTCAGACTT+AGG | - | chr5_2:12886570-12886589 | None:intergenic | 40.0% | |
| TAAAGCCTAAGTCTGATCTG+CGG | + | chr5_2:12886593-12886612 | Msa0757870:intron | 40.0% | |
| CTTAAATAGGTCGGCCTAAT+AGG | + | chr5_2:12887011-12887030 | Msa0757870:intron | 40.0% | |
| CTAACAGATGAATTTGACGG+AGG | + | chr5_2:12887499-12887518 | Msa0757870:intron | 40.0% | |
| AACAGATGAATTTGACGGAG+GGG | + | chr5_2:12887501-12887520 | Msa0757870:intron | 40.0% | |
| GACGAAACTTACAATTTCGG+AGG | + | chr5_2:12887590-12887609 | Msa0757870:intron | 40.0% | |
| ! | TCACACTATAAGAGCATGAG+TGG | + | chr5_2:12887811-12887830 | Msa0757870:intron | 40.0% |
| ! | CACACTATAAGAGCATGAGT+GGG | + | chr5_2:12887812-12887831 | Msa0757870:intron | 40.0% |
| ! | ACACTATAAGAGCATGAGTG+GGG | + | chr5_2:12887813-12887832 | Msa0757870:intron | 40.0% |
| TTATTCTCACCCTCACTCTA+TGG | - | chr5_2:12887908-12887927 | None:intergenic | 40.0% | |
| GGGCATAAATTTGAAAACCC+AGG | - | chr5_2:12888230-12888249 | None:intergenic | 40.0% | |
| GAATGAGAGAAGAACGCATT+AGG | - | chr5_2:12888362-12888381 | None:intergenic | 40.0% | |
| GTTCAAGAAGGTAGAAGACT+AGG | - | chr5_2:12888517-12888536 | None:intergenic | 40.0% | |
| AACTGAATGGTGAAGTGAAG+TGG | - | chr5_2:12888571-12888590 | None:intergenic | 40.0% | |
| GTAACCGTCCAAATTACTAC+AGG | + | chr5_2:12888769-12888788 | Msa0757870:intron | 40.0% | |
| TATTTAGCGGAAATCAAGGG+AGG | - | chr5_2:12888924-12888943 | None:intergenic | 40.0% | |
| ! | ATTAGTGTCAAAGGAGTGCA+TGG | + | chr5_2:12889119-12889138 | Msa0757870:intron | 40.0% |
| ! | GCATGGATTTTCAACTCTCA+CGG | + | chr5_2:12889136-12889155 | Msa0757870:intron | 40.0% |
| TGCAGGTGATGTTCTCAAAT+CGG | + | chr5_2:12889527-12889546 | Msa0757870:intron | 40.0% | |
| ! | CAACATCCCAAAATTTTCGC+AGG | + | chr5_2:12889600-12889619 | Msa0757870:CDS | 40.0% |
| GAAGATGTATTCGCTGCAAA+AGG | - | chr5_2:12889761-12889780 | None:intergenic | 40.0% | |
| ! | AGACAAACTTTTCACACCAG+AGG | + | chr5_2:12889794-12889813 | Msa0757870:CDS | 40.0% |
| ! | TTCATGTTTTGTGCAACCTC+TGG | - | chr5_2:12889813-12889832 | None:intergenic | 40.0% |
| CCGAAGCAAGAAATTGCTTA+AGG | - | chr5_2:12890024-12890043 | None:intergenic | 40.0% | |
| GGTGAACGTAATTTGGACAC+TGG | + | chr5_2:12885550-12885569 | Msa0757870:CDS | 45.0% | |
| ! | GGTTAGTTGGGTAGTGAAGA+TGG | + | chr5_2:12885571-12885590 | Msa0757870:CDS | 45.0% |
| GTGGGTTTGGATATGGGTTT+GGG | - | chr5_2:12885689-12885708 | None:intergenic | 45.0% | |
| GTGGAGAAATGTGTTGTGGT+TGG | + | chr5_2:12885908-12885927 | Msa0757870:CDS | 45.0% | |
| GTGGTTGGATTCAGTTATGG+TGG | + | chr5_2:12885923-12885942 | Msa0757870:CDS | 45.0% | |
| AACTGCACCACTTACTACCA+CGG | - | chr5_2:12885996-12886015 | None:intergenic | 45.0% | |
| ! | GGTAGTAAGTGGTGCAGTTT+TGG | + | chr5_2:12885997-12886016 | Msa0757870:CDS | 45.0% |
| !!! | TGGTGCAGTTTTGGCTGTAA+AGG | + | chr5_2:12886006-12886025 | Msa0757870:CDS | 45.0% |
| AGTAAGGCAGTTGAAGATGC+TGG | + | chr5_2:12886040-12886059 | Msa0757870:CDS | 45.0% | |
| TTGATGAGACGGTTGGGAAA+CGG | - | chr5_2:12886151-12886170 | None:intergenic | 45.0% | |
| AAGTCCTTGATGAGACGGTT+GGG | - | chr5_2:12886157-12886176 | None:intergenic | 45.0% | |
| AAAGTCCTTGATGAGACGGT+TGG | - | chr5_2:12886158-12886177 | None:intergenic | 45.0% | |
| AGGCTTTGCAAAGCTCAACT+CGG | - | chr5_2:12886550-12886569 | None:intergenic | 45.0% | |
| TATCAGGCTTTCAGAAGGTC+AGG | - | chr5_2:12886649-12886668 | None:intergenic | 45.0% | |
| GACTGTATCAGGCTTTCAGA+AGG | - | chr5_2:12886654-12886673 | None:intergenic | 45.0% | |
| !! | GGCTTAAGAGGCTTTTTGAG+AGG | + | chr5_2:12887032-12887051 | Msa0757870:intron | 45.0% |
| TCGTATGTAGCGATGGGAAT+AGG | - | chr5_2:12887184-12887203 | None:intergenic | 45.0% | |
| GTTTGATGTGAGAGGGTCTT+GGG | - | chr5_2:12888306-12888325 | None:intergenic | 45.0% | |
| CGTCATGGTTTGATGTGAGA+GGG | - | chr5_2:12888313-12888332 | None:intergenic | 45.0% | |
| GGTGATGTTCTCAAATCGGA+AGG | + | chr5_2:12889531-12889550 | Msa0757870:intron | 45.0% | |
| TGCAGCGAATACATCTTCTG+TGG | + | chr5_2:12889763-12889782 | Msa0757870:intron | 45.0% | |
| GCAGCGAATACATCTTCTGT+GGG | + | chr5_2:12889764-12889783 | Msa0757870:intron | 45.0% | |
| CAGCGAATACATCTTCTGTG+GGG | + | chr5_2:12889765-12889784 | Msa0757870:intron | 45.0% | |
| GAATATGCCAACGGTGTCTT+TGG | + | chr5_2:12890119-12890138 | Msa0757870:three_prime_UTR | 45.0% | |
| GAACTTACCAAAGACACCGT+TGG | - | chr5_2:12890129-12890148 | None:intergenic | 45.0% | |
| !!! | ACTTTATTATTATTTTTTAT+GGG | + | chr5_2:12889648-12889667 | Msa0757870:intron | 5.0% |
| AGTTGGGTAGTGAAGATGGC+AGG | + | chr5_2:12885575-12885594 | Msa0757870:CDS | 50.0% | |
| CGTGGGTTTGGATATGGGTT+TGG | - | chr5_2:12885690-12885709 | None:intergenic | 50.0% | |
| GGCTTCGTGGGTTTGGATAT+GGG | - | chr5_2:12885695-12885714 | None:intergenic | 50.0% | |
| TGGCTTCGTGGGTTTGGATA+TGG | - | chr5_2:12885696-12885715 | None:intergenic | 50.0% | |
| !! | AGAACCACTACTGGCTTCGT+GGG | - | chr5_2:12885707-12885726 | None:intergenic | 50.0% |
| TGGCTCAACCACCGATAAGA+CGG | + | chr5_2:12885829-12885848 | Msa0757870:CDS | 50.0% | |
| CAATGACCGGTCCGTCTTAT+CGG | - | chr5_2:12885843-12885862 | None:intergenic | 50.0% | |
| CGGCTTGAAAAGCCAATGAC+CGG | - | chr5_2:12885856-12885875 | None:intergenic | 50.0% | |
| !! | TTTTCAAGCCGAGTGCTTGG+CGG | + | chr5_2:12885865-12885884 | Msa0757870:CDS | 50.0% |
| GCGGTGGGGTTAAAGAAACT+CGG | + | chr5_2:12885884-12885903 | Msa0757870:CDS | 50.0% | |
| CGGTGGGGTTAAAGAAACTC+GGG | + | chr5_2:12885885-12885904 | Msa0757870:CDS | 50.0% | |
| GGTGGGGTTAAAGAAACTCG+GGG | + | chr5_2:12885886-12885905 | Msa0757870:CDS | 50.0% | |
| !! | GGCTGAGATGTATAGTGGGT+TGG | + | chr5_2:12885964-12885983 | Msa0757870:CDS | 50.0% |
| GTTCAAGCCGTGGTAGTAAG+TGG | + | chr5_2:12885986-12886005 | Msa0757870:CDS | 50.0% | |
| GTTTCCCAACCGTCTCATCA+AGG | + | chr5_2:12886150-12886169 | Msa0757870:CDS | 50.0% | |
| CAGGCTCAGGCCTAAAAAGT+AGG | - | chr5_2:12886630-12886649 | None:intergenic | 50.0% | |
| ACAGGCTAGCAGACTGTATC+AGG | - | chr5_2:12886665-12886684 | None:intergenic | 50.0% | |
| GTCGGCCTAATAGGCTTAAG+AGG | + | chr5_2:12887020-12887039 | Msa0757870:intron | 50.0% | |
| !! | TTTTTGAGAGGCCTGAGGTC+TGG | + | chr5_2:12887044-12887063 | Msa0757870:intron | 50.0% |
| AGCTTAAAAGGCCAGACCTC+AGG | - | chr5_2:12887058-12887077 | None:intergenic | 50.0% | |
| ! | AGGCTAGTAGTTTGCAGTGC+AGG | + | chr5_2:12887758-12887777 | Msa0757870:intron | 50.0% |
| GACATACGACTAATCAGGGG+CGG | + | chr5_2:12888168-12888187 | Msa0757870:intron | 50.0% | |
| GGTTTGATGTGAGAGGGTCT+TGG | - | chr5_2:12888307-12888326 | None:intergenic | 50.0% | |
| GCGTCATGGTTTGATGTGAG+AGG | - | chr5_2:12888314-12888333 | None:intergenic | 50.0% | |
| GCGGAAATCAAGGGAGGTAA+TGG | - | chr5_2:12888918-12888937 | None:intergenic | 50.0% | |
| TTAGTCACAGTGGCGTATCC+AGG | - | chr5_2:12889096-12889115 | None:intergenic | 50.0% | |
| ! | GATAAAGAAGGCTGGCCACT+TGG | + | chr5_2:12889964-12889983 | Msa0757870:CDS | 50.0% |
| GTCGCTCAATATGAGCCAAG+TGG | - | chr5_2:12889982-12890001 | None:intergenic | 50.0% | |
| !! | CACTACTGGCTTCGTGGGTT+TGG | - | chr5_2:12885702-12885721 | None:intergenic | 55.0% |
| CAAACCCACGAAGCCAGTAG+TGG | + | chr5_2:12885700-12885719 | Msa0757870:intron | 55.0% | |
| !! | GAGAACCACTACTGGCTTCG+TGG | - | chr5_2:12885708-12885727 | None:intergenic | 55.0% |
| CCAGTAGTGGTTCTCCTCCA+CGG | + | chr5_2:12885713-12885732 | Msa0757870:CDS | 55.0% | |
| !! | GCGGTGATGGACTAGCTACT+TGG | + | chr5_2:12885741-12885760 | Msa0757870:CDS | 55.0% |
| CAACCACCGATAAGACGGAC+CGG | + | chr5_2:12885834-12885853 | Msa0757870:CDS | 55.0% | |
| CGATAAGACGGACCGGTCAT+TGG | + | chr5_2:12885841-12885860 | Msa0757870:CDS | 55.0% | |
| !! | GGCTTTTCAAGCCGAGTGCT+TGG | + | chr5_2:12885862-12885881 | Msa0757870:CDS | 55.0% |
| GGGGTTAAAGAAACTCGGGG+TGG | + | chr5_2:12885889-12885908 | Msa0757870:CDS | 55.0% | |
| CGGGGTGGAGAAATGTGTTG+TGG | + | chr5_2:12885904-12885923 | Msa0757870:CDS | 55.0% | |
| !! | TAGTGGGTTGGTTCAAGCCG+TGG | + | chr5_2:12885976-12885995 | Msa0757870:CDS | 55.0% |
| ACAGGCCGCAGATCAGACTT+AGG | - | chr5_2:12886601-12886620 | None:intergenic | 55.0% | |
| GCTTTCAGAAGGTCAGGCTC+AGG | - | chr5_2:12886643-12886662 | None:intergenic | 55.0% | |
| !! | GAGGCTTTTTGAGAGGCCTG+AGG | + | chr5_2:12887039-12887058 | Msa0757870:intron | 55.0% |
| TGTAGCGATGGGAATAGGCC+AGG | - | chr5_2:12887179-12887198 | None:intergenic | 55.0% | |
| GGACCTAGGTGTGTGTGTCA+GGG | + | chr5_2:12888189-12888208 | Msa0757870:intron | 55.0% | |
| GACCTAGGTGTGTGTGTCAG+GGG | + | chr5_2:12888190-12888209 | Msa0757870:intron | 55.0% | |
| TGATGTGAGAGGGTCTTGGG+AGG | - | chr5_2:12888303-12888322 | None:intergenic | 55.0% | |
| TATCCAGGACCCTGGTTCAG+GGG | - | chr5_2:12889081-12889100 | None:intergenic | 55.0% | |
| GTATCCAGGACCCTGGTTCA+GGG | - | chr5_2:12889082-12889101 | None:intergenic | 55.0% | |
| CCGTGGAGGAGAACCACTAC+TGG | - | chr5_2:12885716-12885735 | None:intergenic | 60.0% | |
| GTTCTCCTCCACGGCTTCTG+CGG | + | chr5_2:12885722-12885741 | Msa0757870:CDS | 60.0% | |
| TGACCGGTCCGTCTTATCGG+TGG | - | chr5_2:12885840-12885859 | None:intergenic | 60.0% | |
| TAACCCCACCGCCAAGCACT+CGG | - | chr5_2:12885876-12885895 | None:intergenic | 60.0% | |
| CTACGGCCTAGCCTACGACA+GGG | - | chr5_2:12887141-12887160 | None:intergenic | 60.0% | |
| GACTAATCAGGGGCGGACCT+AGG | + | chr5_2:12888175-12888194 | Msa0757870:intron | 60.0% | |
| CGGACCTAGGTGTGTGTGTC+AGG | + | chr5_2:12888188-12888207 | Msa0757870:intron | 60.0% | |
| AGCCCCTGACACACACACCT+AGG | - | chr5_2:12888195-12888214 | None:intergenic | 60.0% | |
| ATTTCCGCACCCCCTGAACC+AGG | + | chr5_2:12889068-12889087 | Msa0757870:intron | 60.0% | |
| TTTCCGCACCCCCTGAACCA+GGG | + | chr5_2:12889069-12889088 | Msa0757870:intron | 60.0% | |
| ATCCAGGACCCTGGTTCAGG+GGG | - | chr5_2:12889080-12889099 | None:intergenic | 60.0% | |
| CGTATCCAGGACCCTGGTTC+AGG | - | chr5_2:12889083-12889102 | None:intergenic | 60.0% | |
| CATCACCGCAGAAGCCGTGG+AGG | - | chr5_2:12885730-12885749 | None:intergenic | 65.0% | |
| CTCCACGGCTTCTGCGGTGA+TGG | + | chr5_2:12885728-12885747 | Msa0757870:CDS | 65.0% | |
| GTCCATCACCGCAGAAGCCG+TGG | - | chr5_2:12885733-12885752 | None:intergenic | 65.0% | |
| TCAAGCCGAGTGCTTGGCGG+TGG | + | chr5_2:12885868-12885887 | Msa0757870:CDS | 65.0% | |
| CAAGCCGAGTGCTTGGCGGT+GGG | + | chr5_2:12885869-12885888 | Msa0757870:CDS | 65.0% | |
| AAGCCGAGTGCTTGGCGGTG+GGG | + | chr5_2:12885870-12885889 | Msa0757870:CDS | 65.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | - | chr5_2:12887142-12887161 | None:intergenic | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | + | chr5_2:12887139-12887158 | Msa0757870:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | - | chr5_2:12887166-12887185 | None:intergenic | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | - | chr5_2:12887167-12887186 | None:intergenic | 65.0% | |
| GCGATGGGAATAGGCCAGGC+CGG | - | chr5_2:12887175-12887194 | None:intergenic | 65.0% | |
| GGGCTGCACTTGCACACCCT+GGG | + | chr5_2:12888210-12888229 | Msa0757870:intron | 65.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | - | chr5_2:12889089-12889108 | None:intergenic | 65.0% | |
| AGCCTACGACAGGGCAGGCC+AGG | - | chr5_2:12887132-12887151 | None:intergenic | 70.0% | |
| GGCCTGCCCTGTCGTAGGCT+AGG | + | chr5_2:12887132-12887151 | Msa0757870:intron | 70.0% | |
| GGCCTAGCCTACGACAGGGC+AGG | - | chr5_2:12887137-12887156 | None:intergenic | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | + | chr5_2:12887149-12887168 | Msa0757870:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | - | chr5_2:12887165-12887184 | None:intergenic | 70.0% | |
| GGGGCTGCACTTGCACACCC+TGG | + | chr5_2:12888209-12888228 | Msa0757870:intron | 70.0% | |
| GGACCCTGGTTCAGGGGGTG+CGG | - | chr5_2:12889075-12889094 | None:intergenic | 70.0% | |
| CACCCCCTGAACCAGGGTCC+TGG | + | chr5_2:12889075-12889094 | Msa0757870:intron | 70.0% | |
| GGCCTGGCCTGCCCTGTCGT+AGG | + | chr5_2:12887127-12887146 | Msa0757870:intron | 75.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | + | chr5_2:12887153-12887172 | Msa0757870:intron | 75.0% | |
| GGCCGGCCTACAGGGGCCTA+CGG | - | chr5_2:12887158-12887177 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | + | chr5_2:12887158-12887177 | Msa0757870:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12885464 | 12890266 | 12885464 | ID=Msa0757870;Name=Msa0757870 |
| chr5_2 | mRNA | 12885464 | 12890266 | 12885464 | ID=Msa0757870-mRNA-1;Parent=Msa0757870;Name=Msa0757870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=75|1|1|1|0.75|0.6|5|179|310 |
| chr5_2 | exon | 12885464 | 12885679 | 12885464 | ID=Msa0757870-mRNA-1:exon:5776;Parent=Msa0757870-mRNA-1 |
| chr5_2 | exon | 12885704 | 12886183 | 12885704 | ID=Msa0757870-mRNA-1:exon:5777;Parent=Msa0757870-mRNA-1 |
| chr5_2 | exon | 12889532 | 12889621 | 12889532 | ID=Msa0757870-mRNA-1:exon:5778;Parent=Msa0757870-mRNA-1 |
| chr5_2 | exon | 12889768 | 12889835 | 12889768 | ID=Msa0757870-mRNA-1:exon:5779;Parent=Msa0757870-mRNA-1 |
| chr5_2 | exon | 12889934 | 12890266 | 12889934 | ID=Msa0757870-mRNA-1:exon:5780;Parent=Msa0757870-mRNA-1 |
| chr5_2 | five_prime_UTR | 12885464 | 12885538 | 12885464 | ID=Msa0757870-mRNA-1:five_prime_utr;Parent=Msa0757870-mRNA-1 |
| chr5_2 | CDS | 12885539 | 12885679 | 12885539 | ID=Msa0757870-mRNA-1:cds;Parent=Msa0757870-mRNA-1 |
| chr5_2 | CDS | 12885704 | 12886183 | 12885704 | ID=Msa0757870-mRNA-1:cds;Parent=Msa0757870-mRNA-1 |
| chr5_2 | CDS | 12889532 | 12889621 | 12889532 | ID=Msa0757870-mRNA-1:cds;Parent=Msa0757870-mRNA-1 |
| chr5_2 | CDS | 12889768 | 12889835 | 12889768 | ID=Msa0757870-mRNA-1:cds;Parent=Msa0757870-mRNA-1 |
| chr5_2 | CDS | 12889934 | 12890087 | 12889934 | ID=Msa0757870-mRNA-1:cds;Parent=Msa0757870-mRNA-1 |
| chr5_2 | three_prime_UTR | 12890088 | 12890266 | 12890088 | ID=Msa0757870-mRNA-1:three_prime_utr;Parent=Msa0757870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
