Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031220 | sp|Q43092|SSG1_PEA | 85.270 | 611 | 79 | 5 | 39 | 646 | 1 | 603 | 0.0 | 1053 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031220 | A0A072VLQ9 | 97.039 | 608 | 18 | 0 | 39 | 646 | 1 | 608 | 0.0 | 1229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031220 | Msa0078510 | 0.927299 | 1.425907e-91 | -8.615850e-47 |
| Msa0031220 | Msa0099670 | 0.806578 | 7.686367e-50 | -8.615850e-47 |
| Msa0031220 | Msa0126290 | 0.947199 | 1.070401e-105 | -8.615850e-47 |
| Msa0031220 | Msa0137200 | 0.828849 | 7.153485e-55 | -8.615850e-47 |
| Msa0031220 | Msa0171170 | 0.960565 | 1.059441e-118 | -8.615850e-47 |
| Msa0031220 | Msa0182380 | 0.844179 | 8.875262e-59 | -8.615850e-47 |
| Msa0031220 | Msa0238260 | 0.807757 | 4.323773e-50 | -8.615850e-47 |
| Msa0031220 | Msa0275690 | 0.801309 | 9.566668e-49 | -8.615850e-47 |
| Msa0031220 | Msa0369360 | 0.815369 | 9.577984e-52 | -8.615850e-47 |
| Msa0031220 | Msa0416800 | 0.815827 | 7.573879e-52 | -8.615850e-47 |
| Msa0031220 | Msa0463460 | 0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0031220 | Msa0479740 | 0.815838 | 7.528161e-52 | -8.615850e-47 |
| Msa0031220 | Msa0509020 | 0.812912 | 3.338337e-51 | -8.615850e-47 |
| Msa0031220 | Msa0825620 | 0.808647 | 2.795104e-50 | -8.615850e-47 |
| Msa0031220 | Msa0847390 | 0.809080 | 2.257680e-50 | -8.615850e-47 |
| Msa0031220 | Msa1109520 | 0.806769 | 7.003920e-50 | -8.615850e-47 |
| Msa0031220 | Msa1404500 | 0.850617 | 1.512311e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031220 | MtrunA17_Chr1g0189131 | 97.039 | 608 | 18 | 0 | 39 | 646 | 1 | 608 | 0.0 | 1229 |
| Msa0031220 | MtrunA17_Chr8g0345941 | 74.003 | 577 | 146 | 2 | 73 | 646 | 41 | 616 | 0.0 | 879 |
| Msa0031220 | MtrunA17_Chr6g0453261 | 38.408 | 578 | 323 | 12 | 53 | 620 | 199 | 753 | 1.35e-116 | 365 |
| Msa0031220 | MtrunA17_Chr3g0126911 | 39.504 | 524 | 271 | 13 | 121 | 618 | 142 | 645 | 3.07e-112 | 351 |
| Msa0031220 | MtrunA17_Chr4g0051911 | 30.258 | 542 | 282 | 21 | 119 | 619 | 481 | 967 | 4.00e-52 | 194 |
| Msa0031220 | MtrunA17_Chr2g0288461 | 27.789 | 511 | 277 | 15 | 120 | 611 | 658 | 1095 | 3.29e-46 | 176 |
| Msa0031220 | MtrunA17_Chr5g0411441 | 22.965 | 479 | 317 | 15 | 80 | 539 | 149 | 594 | 2.94e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031220 | AT1G32900.1 | 71.498 | 614 | 165 | 5 | 39 | 646 | 1 | 610 | 0.0 | 878 |
| Msa0031220 | AT3G01180.1 | 40.866 | 531 | 280 | 11 | 102 | 620 | 279 | 787 | 1.20e-114 | 362 |
| Msa0031220 | AT5G24300.2 | 39.845 | 517 | 274 | 10 | 121 | 618 | 143 | 641 | 2.72e-111 | 349 |
| Msa0031220 | AT5G24300.1 | 39.845 | 517 | 274 | 10 | 121 | 618 | 143 | 641 | 2.72e-111 | 349 |
| Msa0031220 | AT4G18240.1 | 29.795 | 537 | 285 | 19 | 118 | 615 | 540 | 1023 | 1.04e-53 | 199 |
| Msa0031220 | AT1G11720.1 | 29.038 | 551 | 300 | 15 | 87 | 611 | 545 | 1030 | 3.26e-52 | 194 |
| Msa0031220 | AT1G11720.2 | 29.038 | 551 | 300 | 15 | 87 | 611 | 597 | 1082 | 3.65e-52 | 194 |
Find 179 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGACTTGGTGATGTTCT+TGG | 0.252319 | 1_1:-57920798 | Msa0031220:CDS |
| TATATATATGTTGCTTAAAA+AGG | 0.253715 | 1_1:+57916918 | None:intergenic |
| GCAGAGTGCAGTAAGATTAT+AGG | 0.275918 | 1_1:-57917027 | Msa0031220:three_prime_UTR |
| AGTCTTGAGCCATGCAGTTC+TGG | 0.289019 | 1_1:+57917396 | None:intergenic |
| TATGCCAAGGAACTTGTTTC+CGG | 0.292552 | 1_1:-57918601 | Msa0031220:CDS |
| TGGTGGACTTCCACCTGTTT+TGG | 0.300685 | 1_1:-57920778 | Msa0031220:CDS |
| TGCAGGGACCAGCCAAACTA+TGG | 0.307764 | 1_1:-57917221 | Msa0031220:intron |
| GGGTGCATGCCTCAATTTCC+AGG | 0.341739 | 1_1:-57921063 | Msa0031220:CDS |
| GATTATCTCTTGCATGGCTT+GGG | 0.348471 | 1_1:+57917418 | None:intergenic |
| GGATTATCTCTTGCATGGCT+TGG | 0.348500 | 1_1:+57917417 | None:intergenic |
| ATTCATCAACTACGATTTAC+CGG | 0.361965 | 1_1:+57916992 | None:intergenic |
| AGAAGACAGAGGTGTGGAAT+TGG | 0.366409 | 1_1:-57918578 | Msa0031220:CDS |
| GACAATATCATTCGTTCAAC+TGG | 0.368569 | 1_1:-57918556 | Msa0031220:CDS |
| AAACTCTATGGTCCTAAAAC+TGG | 0.369328 | 1_1:-57919996 | Msa0031220:CDS |
| AGTTCCAAGGTACAATGATT+AGG | 0.373220 | 1_1:+57916952 | None:intergenic |
| GGCAACGAACCTGGAATAGA+TGG | 0.380159 | 1_1:-57917168 | Msa0031220:CDS |
| GACAAGAGTATCCCTTTGAT+AGG | 0.395078 | 1_1:-57918300 | Msa0031220:CDS |
| CTCTTCTTCCCTGGAAATTG+AGG | 0.396778 | 1_1:+57921054 | None:intergenic |
| GGAATGAATTTGGTGTTTGT+TGG | 0.396832 | 1_1:-57920849 | Msa0031220:CDS |
| ATCTCCTCTCCATCTATTCC+AGG | 0.397331 | 1_1:+57917159 | None:intergenic |
| CAATTACATGCCATGCCATA+TGG | 0.397832 | 1_1:-57917931 | Msa0031220:CDS |
| AATGCAGTCTAAGTGAATAA+AGG | 0.399820 | 1_1:-57916811 | Msa0031220:three_prime_UTR |
| CATATCCTGGCAAGGCAATC+GGG | 0.403532 | 1_1:-57918047 | Msa0031220:CDS |
| TCGATGTATTTATCAGTTTG+TGG | 0.404855 | 1_1:+57918490 | None:intergenic |
| CCACAAGGCTCAAATCTACT+TGG | 0.408419 | 1_1:+57917961 | None:intergenic |
| TTGGCTCACAAAATAATTGC+TGG | 0.409575 | 1_1:-57918003 | Msa0031220:CDS |
| GAACTATTATCTGAACATTC+TGG | 0.409656 | 1_1:+57918208 | None:intergenic |
| CAGTGCGTTCTCCCATAGTT+TGG | 0.414595 | 1_1:+57917209 | None:intergenic |
| GTGCCCATCGTTTCATCAAC+TGG | 0.419733 | 1_1:-57917656 | Msa0031220:CDS |
| AGTGAATAAAGGCCTATTCC+AGG | 0.421292 | 1_1:-57916800 | Msa0031220:three_prime_UTR |
| GATAACTTATCTACATCATC+TGG | 0.425102 | 1_1:+57917476 | None:intergenic |
| ACTTTCAAACAACCTGGAAT+AGG | 0.425497 | 1_1:+57916788 | None:intergenic |
| TGATTACTCACCAGTGCTCC+TGG | 0.426710 | 1_1:+57921307 | None:intergenic |
| TGAAATCAATGTACAAGTCT+AGG | 0.429447 | 1_1:-57919028 | Msa0031220:CDS |
| TAGATTCAGCTTGTTATGTC+AGG | 0.430029 | 1_1:-57919949 | Msa0031220:intron |
| TTGCATGGCTTGGGTACCAT+AGG | 0.431090 | 1_1:+57917427 | None:intergenic |
| TGAAGGGAAGGAAAATCAAT+TGG | 0.431550 | 1_1:-57918675 | Msa0031220:CDS |
| ACATATCCTGGCAAGGCAAT+CGG | 0.432716 | 1_1:-57918048 | Msa0031220:CDS |
| CTTTGATAGGATTCATTGGC+AGG | 0.436538 | 1_1:-57918287 | Msa0031220:CDS |
| TAGTCTTCGTTGCCAATGAT+TGG | 0.437773 | 1_1:-57919076 | Msa0031220:CDS |
| GCCACTCCATGAGCATCAAT+AGG | 0.438764 | 1_1:-57917111 | Msa0031220:exon |
| ATCCCTTTGATAGGATTCAT+TGG | 0.441198 | 1_1:-57918291 | Msa0031220:CDS |
| AAGAGCAGTGTGCCAATCAT+TGG | 0.452656 | 1_1:+57919064 | None:intergenic |
| AGTGAGAGTGGAAAGTTTAA+CGG | 0.454298 | 1_1:-57920888 | Msa0031220:CDS |
| GTGAGAGTGGAAAGTTTAAC+GGG | 0.454600 | 1_1:-57920887 | Msa0031220:CDS |
| ACTGTGAAAGAAGGCTATAC+AGG | 0.454630 | 1_1:-57917620 | Msa0031220:CDS |
| AACAAACTTACAGCCAAAAC+AGG | 0.454783 | 1_1:+57920765 | None:intergenic |
| AACAGCAGCAAATATTTCTC+AGG | 0.455902 | 1_1:-57919213 | Msa0031220:CDS |
| GAAATCAATGTACAAGTCTA+GGG | 0.457571 | 1_1:-57919027 | Msa0031220:CDS |
| CCAGGGAAGACATGCCTCTT+CGG | 0.460246 | 1_1:-57918878 | Msa0031220:CDS |
| AGTGTGTGGTGGAATGAATT+TGG | 0.460839 | 1_1:-57920859 | Msa0031220:CDS |
| AACCAGGCGTTTACTTATGT+TGG | 0.462582 | 1_1:-57920990 | Msa0031220:CDS |
| GCTACCCCGATTGCCTTGCC+AGG | 0.465671 | 1_1:+57918042 | None:intergenic |
| AACTATGAGGGGTTCTTCTG+TGG | 0.465840 | 1_1:-57921084 | Msa0031220:CDS |
| GCGTTCTCCCATAGTTTGGC+TGG | 0.466225 | 1_1:+57917213 | None:intergenic |
| AAAGGGATACTCTTGTCAAC+AGG | 0.467239 | 1_1:+57918306 | None:intergenic |
| CTCTTCTCATCATTGTTAGC+AGG | 0.467353 | 1_1:-57921338 | Msa0031220:CDS |
| ACATAATCATGGCAACTATG+AGG | 0.472184 | 1_1:-57921097 | Msa0031220:CDS |
| AGCAAAATTCAATGGCCCCT+TGG | 0.472444 | 1_1:-57918022 | Msa0031220:CDS |
| AAAGAGCTTCTGAATTCATC+AGG | 0.472676 | 1_1:+57918835 | None:intergenic |
| TTCTCCGGAAACAAGTTCCT+TGG | 0.474746 | 1_1:+57918597 | None:intergenic |
| CTGTTTAAGTTCAAAACCCT+TGG | 0.474928 | 1_1:+57919231 | None:intergenic |
| CAGCTGGAGGTAACATATCC+TGG | 0.475441 | 1_1:-57918060 | Msa0031220:CDS |
| TAGTCTCTACTCTTCTTCCC+TGG | 0.476967 | 1_1:+57921045 | None:intergenic |
| AAATATTTCTCAGGACCATA+TGG | 0.478714 | 1_1:-57919204 | Msa0031220:intron |
| GGAGAAGCAAATTGAGCAGC+TGG | 0.478845 | 1_1:-57918076 | Msa0031220:CDS |
| GAGGTCGCAGGCAACGAACC+TGG | 0.481045 | 1_1:-57917177 | Msa0031220:CDS |
| CGTGTAACTTTCAAACAACC+TGG | 0.481890 | 1_1:+57916782 | None:intergenic |
| TACATTGATTTCAAGTAGCA+TGG | 0.483987 | 1_1:+57919038 | None:intergenic |
| AAGACCGAGTCAAAACTCTA+TGG | 0.484633 | 1_1:-57920008 | Msa0031220:CDS |
| CAAAATGTAGTAGGCCATGT+TGG | 0.485472 | 1_1:-57921405 | Msa0031220:exon |
| GTACCTTGGAACTTAGTTGA+AGG | 0.488096 | 1_1:-57916942 | Msa0031220:three_prime_UTR |
| ACGAGTGAGAAAAGTGAGAG+TGG | 0.490069 | 1_1:-57920900 | Msa0031220:CDS |
| AAAATCAATTGGATGAAGGC+TGG | 0.490353 | 1_1:-57918664 | Msa0031220:CDS |
| TATTCATAACATCGCCTACC+AGG | 0.491456 | 1_1:-57918896 | Msa0031220:CDS |
| GAAGCTCTTCAAGCTGAGGT+TGG | 0.493585 | 1_1:-57918333 | Msa0031220:CDS |
| TTCCACACCTCTGTCTTCTC+CGG | 0.496327 | 1_1:+57918582 | None:intergenic |
| AAAATCGTTATCTAATACAT+GGG | 0.497803 | 1_1:-57917057 | Msa0031220:three_prime_UTR |
| GTTCTGGATTATCTCTTGCA+TGG | 0.498846 | 1_1:+57917412 | None:intergenic |
| ATAAGCTCTACCGTTCCATA+TGG | 0.500986 | 1_1:+57917916 | None:intergenic |
| CAGGTATACTACACCTGTGA+AGG | 0.511341 | 1_1:-57918692 | Msa0031220:CDS |
| TGGAGAGGAGATTGCTCCAC+TGG | 0.512116 | 1_1:-57917148 | Msa0031220:CDS |
| CATAATCATGGCAACTATGA+GGG | 0.512735 | 1_1:-57921096 | Msa0031220:CDS |
| ACTATGAGGGGTTCTTCTGT+GGG | 0.513464 | 1_1:-57921083 | Msa0031220:CDS |
| GTGTTTGTTGGAGCTGAAGT+TGG | 0.514248 | 1_1:-57920837 | Msa0031220:CDS |
| GGACTTGGTGATGTTCTTGG+TGG | 0.517016 | 1_1:-57920795 | Msa0031220:CDS |
| AAGAGAATTTGACATAATCA+TGG | 0.519378 | 1_1:-57921108 | Msa0031220:CDS |
| AAAATGTAGTAGGCCATGTT+GGG | 0.520389 | 1_1:-57921404 | Msa0031220:exon |
| CCGAAGAGGCATGTCTTCCC+TGG | 0.521135 | 1_1:+57918878 | None:intergenic |
| GGTATCACTGGTATCGTGAA+TGG | 0.523833 | 1_1:-57918535 | Msa0031220:CDS |
| GGCCGCACTTGAGGCACCAA+GGG | 0.524631 | 1_1:-57919247 | Msa0031220:CDS |
| TTGGAGCTGAAGTTGGACCT+TGG | 0.526427 | 1_1:-57920830 | Msa0031220:CDS |
| TGCCAATGAATCCTATCAAA+GGG | 0.530139 | 1_1:+57918289 | None:intergenic |
| ATCGGGGTAGCAAAATTCAA+TGG | 0.530949 | 1_1:-57918030 | Msa0031220:CDS |
| ATTCGTTCAACTGGTATCAC+TGG | 0.533593 | 1_1:-57918547 | Msa0031220:CDS |
| AACCAACATAAGTAAACGCC+TGG | 0.533689 | 1_1:+57920988 | None:intergenic |
| TCCACGTGTCAAAATGTAGT+AGG | 0.534629 | 1_1:-57921414 | Msa0031220:five_prime_UTR |
| GGAGATTGCTCCACTGGCAA+AGG | 0.537895 | 1_1:-57917142 | Msa0031220:CDS |
| ATGATCAATACAAGGATGCA+TGG | 0.538053 | 1_1:-57920382 | Msa0031220:CDS |
| CTGTTGAGCCTCGAGGTCGC+AGG | 0.539159 | 1_1:-57917189 | Msa0031220:CDS |
| CCACTCCATGAGCATCAATA+GGG | 0.543596 | 1_1:-57917110 | Msa0031220:exon |
| GGTACACTCTCCAGGAGCAC+TGG | 0.543700 | 1_1:-57921317 | Msa0031220:intron |
| ACGAGAGCCCTTAAAACCTA+TGG | 0.543829 | 1_1:-57917443 | Msa0031220:CDS |
| TAATGACCGTATCTAAAATG+AGG | 0.547425 | 1_1:+57917083 | None:intergenic |
| CAACTTTCAGGCCGCACTTG+AGG | 0.549208 | 1_1:-57919256 | Msa0031220:intron |
| CAAGCATGAGATTAACGCAC+AGG | 0.549848 | 1_1:-57916759 | Msa0031220:three_prime_UTR |
| TGTTAGCAGGTACACTCTCC+AGG | 0.551706 | 1_1:-57921325 | Msa0031220:CDS |
| CTGCCAATGAATCCTATCAA+AGG | 0.556180 | 1_1:+57918288 | None:intergenic |
| TGGAGTAAGACTGGTGGACT+TGG | 0.556639 | 1_1:-57920810 | Msa0031220:CDS |
| GATATCCCTATTGATGCTCA+TGG | 0.558967 | 1_1:+57917105 | None:intergenic |
| TTCTTTCACTGCTACAAGAG+AGG | 0.559399 | 1_1:-57920205 | Msa0031220:CDS |
| CTCTCAACAAGCTGCACGTG+CGG | 0.562469 | 1_1:-57920959 | Msa0031220:CDS |
| ACAAGTTCCTTGGCATAATG+TGG | 0.565321 | 1_1:+57918607 | None:intergenic |
| AAGGAAAATCAATTGGATGA+AGG | 0.565800 | 1_1:-57918668 | Msa0031220:CDS |
| CACTGGTATCGTGAATGGCA+TGG | 0.566020 | 1_1:-57918530 | Msa0031220:CDS |
| CTCTACCGTTCCATATGGCA+TGG | 0.581372 | 1_1:+57917921 | None:intergenic |
| CTTGTTGACACTGTGAAAGA+AGG | 0.581668 | 1_1:-57917629 | Msa0031220:CDS |
| GCAGGGACCAGCCAAACTAT+GGG | 0.586907 | 1_1:-57917220 | Msa0031220:intron |
| ATACTACACCTGTGAAGGGA+AGG | 0.587286 | 1_1:-57918687 | Msa0031220:CDS |
| TGATCAATACAAGGATGCAT+GGG | 0.587857 | 1_1:-57920381 | Msa0031220:CDS |
| GTTGACTTTGAATAATAACC+AGG | 0.587891 | 1_1:-57921006 | Msa0031220:CDS |
| CACAAGGCTCAAATCTACTT+GGG | 0.588006 | 1_1:+57917962 | None:intergenic |
| CGCTGGAGCGTTCAATGTGG+AGG | 0.590290 | 1_1:-57917591 | Msa0031220:intron |
| CCAAGTAGATTTGAGCCTTG+TGG | 0.590941 | 1_1:-57917961 | Msa0031220:CDS |
| AGAGGCATGTCTTCCCTGGT+AGG | 0.591024 | 1_1:+57918882 | None:intergenic |
| GAAAGAAGCTCTTCAAGCTG+AGG | 0.591901 | 1_1:-57918337 | Msa0031220:CDS |
| GGAACCTAATCATTGTACCT+TGG | 0.592224 | 1_1:-57916956 | Msa0031220:three_prime_UTR |
| CCCTATTGATGCTCATGGAG+TGG | 0.595038 | 1_1:+57917110 | None:intergenic |
| AACGGGAAAATAGTGTGTGG+TGG | 0.595255 | 1_1:-57920870 | Msa0031220:CDS |
| GTTGGACCTTGGAGTAAGAC+TGG | 0.596664 | 1_1:-57920819 | Msa0031220:CDS |
| AGGCCGCACTTGAGGCACCA+AGG | 0.607015 | 1_1:-57919248 | Msa0031220:CDS |
| GGACCTTCAACTAAGTTCCA+AGG | 0.607693 | 1_1:+57916939 | None:intergenic |
| TCCACTGGCAAAGGAAAATG+TGG | 0.611171 | 1_1:-57917133 | Msa0031220:CDS |
| ACCACCAGTTGATGAAACGA+TGG | 0.611672 | 1_1:+57917652 | None:intergenic |
| AACTACGATTTACCGGCTTG+AGG | 0.611964 | 1_1:+57916999 | None:intergenic |
| AAGAAGAGTGTAACCCAACA+TGG | 0.614207 | 1_1:+57921391 | None:intergenic |
| GGCTATACAGGATTCCACGC+TGG | 0.615421 | 1_1:-57917608 | Msa0031220:CDS |
| TTGGAATATGAAAGGTGTGG+GGG | 0.621316 | 1_1:-57920031 | Msa0031220:intron |
| GGAGGTAACATATCCTGGCA+AGG | 0.628738 | 1_1:-57918055 | Msa0031220:CDS |
| CCACCAGTTGATGAAACGAT+GGG | 0.631976 | 1_1:+57917653 | None:intergenic |
| ACATGCCATGCCATATGGAA+CGG | 0.632375 | 1_1:-57917926 | Msa0031220:intron |
| ATAATCATGGCAACTATGAG+GGG | 0.633095 | 1_1:-57921095 | Msa0031220:CDS |
| AGGTATACTACACCTGTGAA+GGG | 0.634448 | 1_1:-57918691 | Msa0031220:CDS |
| GGTGCATGCCTCAATTTCCA+GGG | 0.635599 | 1_1:-57921062 | Msa0031220:CDS |
| ATATCCTGGCAAGGCAATCG+GGG | 0.636935 | 1_1:-57918046 | Msa0031220:CDS |
| GAGAAGAGCGAAGTCCGAAG+AGG | 0.637213 | 1_1:+57918864 | None:intergenic |
| ACCGCGTTATGATCAATACA+AGG | 0.637600 | 1_1:-57920390 | Msa0031220:CDS |
| AACCCTTGGTGCCTCAAGTG+CGG | 0.637721 | 1_1:+57919245 | None:intergenic |
| TTCCGGAGAAGACAGAGGTG+TGG | 0.638206 | 1_1:-57918584 | Msa0031220:CDS |
| GGCAGGCTAGAAGAGCAGAA+AGG | 0.639584 | 1_1:-57918270 | Msa0031220:CDS |
| GTTCGTTGCCTGCGACCTCG+AGG | 0.639956 | 1_1:+57917181 | None:intergenic |
| AAATCAATGTACAAGTCTAG+GGG | 0.641348 | 1_1:-57919026 | Msa0031220:CDS |
| AGACGATGAAGCAGCACGTG+CGG | 0.642323 | 1_1:+57920932 | None:intergenic |
| AGTCCACCAGTCTTACTCCA+AGG | 0.645736 | 1_1:+57920813 | None:intergenic |
| CGAACCTGGAATAGATGGAG+AGG | 0.647618 | 1_1:-57917163 | Msa0031220:CDS |
| AAACTTACAGCCAAAACAGG+TGG | 0.650863 | 1_1:+57920768 | None:intergenic |
| CCCATCGTTTCATCAACTGG+TGG | 0.651767 | 1_1:-57917653 | Msa0031220:CDS |
| ACTTACAGTGAACACTCGGT+CGG | 0.652659 | 1_1:+57918630 | None:intergenic |
| ATTCATAACATCGCCTACCA+GGG | 0.655105 | 1_1:-57918895 | Msa0031220:CDS |
| GTGGACTTACAGTGAACACT+CGG | 0.656424 | 1_1:+57918626 | None:intergenic |
| CTTGTTTCCGGAGAAGACAG+AGG | 0.659038 | 1_1:-57918589 | Msa0031220:CDS |
| AGAGATAATCCAGAACTGCA+TGG | 0.661718 | 1_1:-57917405 | Msa0031220:CDS |
| TTATAGGCATAGCCTCAAGC+CGG | 0.663915 | 1_1:-57917011 | Msa0031220:three_prime_UTR |
| GAACGCACTGTTGAGCCTCG+AGG | 0.665022 | 1_1:-57917196 | Msa0031220:CDS |
| TGTAAGTCCACATTATGCCA+AGG | 0.667821 | 1_1:-57918614 | Msa0031220:CDS |
| CCACGCTGGAGCGTTCAATG+TGG | 0.687588 | 1_1:-57917594 | Msa0031220:CDS |
| GAAGCAAATTGAGCAGCTGG+AGG | 0.687655 | 1_1:-57918073 | Msa0031220:CDS |
| CCACATTGAACGCTCCAGCG+TGG | 0.695003 | 1_1:+57917594 | None:intergenic |
| ATGGCATGGATAATCGCGAG+TGG | 0.696139 | 1_1:-57918516 | Msa0031220:CDS |
| AAGCATGAGATTAACGCACA+GGG | 0.697100 | 1_1:-57916758 | Msa0031220:three_prime_UTR |
| TGTAATTGAACTAGACCACA+AGG | 0.698693 | 1_1:+57917946 | None:intergenic |
| TTTGGAATATGAAAGGTGTG+GGG | 0.705387 | 1_1:-57920032 | Msa0031220:intron |
| AATCAATGTACAAGTCTAGG+GGG | 0.707090 | 1_1:-57919025 | Msa0031220:CDS |
| GGACCTTGGAGTAAGACTGG+TGG | 0.707930 | 1_1:-57920816 | Msa0031220:CDS |
| GGATACTGATGTGTCTGTCG+AGG | 0.708137 | 1_1:-57920360 | Msa0031220:intron |
| TTTAACGGGAAAATAGTGTG+TGG | 0.709211 | 1_1:-57920873 | Msa0031220:CDS |
| TCCTTGTATTGATCATAACG+CGG | 0.721750 | 1_1:+57920389 | None:intergenic |
| TGATGAATGAGTTCTAACGA+AGG | 0.732138 | 1_1:-57916977 | Msa0031220:three_prime_UTR |
| GCGGTGATACAGTCATAACA+CGG | 0.782318 | 1_1:+57920408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTGATAATTTAATTATTTT+AGG | - | chr1_1:57917764-57917783 | Msa0031220:intron | 10.0% |
| !!! | GTGATAATTTAATTATTTTA+GGG | - | chr1_1:57917765-57917784 | Msa0031220:intron | 10.0% |
| !! | AATAATTAAATTATCACATC+AGG | + | chr1_1:57917762-57917781 | None:intergenic | 15.0% |
| !!! | ATTTAATTATTTTAGGGAAA+TGG | - | chr1_1:57917771-57917790 | Msa0031220:intron | 15.0% |
| !!! | TTTAATTATTTTAGGGAAAT+GGG | - | chr1_1:57917772-57917791 | Msa0031220:intron | 15.0% |
| !! | ATTCAAATTCAATCTTATAA+AGG | + | chr1_1:57918118-57918137 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGATTATAACT+TGG | - | chr1_1:57920679-57920698 | Msa0031220:intron | 15.0% |
| !! | AAACTAAAAGATTATAACTT+GGG | - | chr1_1:57920680-57920699 | Msa0031220:intron | 15.0% |
| !!! | TATATATATGTTGCTTAAAA+AGG | + | chr1_1:57921290-57921309 | None:intergenic | 15.0% |
| !! | ATTTATTACTAATACATGCA+TGG | - | chr1_1:57917561-57917580 | Msa0031220:intron | 20.0% |
| !! | GTATAATTCTTGAAAGAAAT+TGG | - | chr1_1:57917897-57917916 | Msa0031220:intron | 20.0% |
| !! | ATGTAAATAAATCATCAACA+AGG | + | chr1_1:57917930-57917949 | None:intergenic | 20.0% |
| !!! | GTTAAACTGACTTTATTTTT+TGG | - | chr1_1:57918148-57918167 | Msa0031220:intron | 20.0% |
| !! | AATACACAAAAGTTAATAGA+GGG | + | chr1_1:57918314-57918333 | None:intergenic | 20.0% |
| !! | AAATACACAAAAGTTAATAG+AGG | + | chr1_1:57918315-57918334 | None:intergenic | 20.0% |
| !!! | CTATTAACTTTTGTGTATTT+TGG | - | chr1_1:57918315-57918334 | Msa0031220:CDS | 20.0% |
| !! | ATTGTAAAGTGATTTATGTA+TGG | + | chr1_1:57918495-57918514 | None:intergenic | 20.0% |
| !! | TACAAAATCTATTTAGCATA+AGG | - | chr1_1:57919247-57919266 | Msa0031220:CDS | 20.0% |
| !!! | TTTTGTTTTGTTTCTTTTTC+AGG | - | chr1_1:57919494-57919513 | Msa0031220:intron | 20.0% |
| !!! | AATTTGAAATGGCAAATAAA+AGG | + | chr1_1:57920316-57920335 | None:intergenic | 20.0% |
| !! | AAAAATCGTTATCTAATACA+TGG | - | chr1_1:57921147-57921166 | Msa0031220:intron | 20.0% |
| !! | AAAATCGTTATCTAATACAT+GGG | - | chr1_1:57921148-57921167 | Msa0031220:intron | 20.0% |
| !! | ATATAGCTTAAACTAACTTA+AGG | - | chr1_1:57921305-57921324 | Msa0031220:intron | 20.0% |
| !!! | CTTAAGGTTTATTTAGAATA+AGG | - | chr1_1:57921321-57921340 | Msa0031220:CDS | 20.0% |
| ! | ATAATAGTATATGTGACAGA+AGG | + | chr1_1:57917032-57917051 | None:intergenic | 25.0% |
| !! | TCCAACTATGTTGTTAATTT+TGG | - | chr1_1:57917055-57917074 | Msa0031220:three_prime_UTR | 25.0% |
| ! | ACCAAAATTAACAACATAGT+TGG | + | chr1_1:57917059-57917078 | None:intergenic | 25.0% |
| ! | AAGAGAATTTGACATAATCA+TGG | - | chr1_1:57917097-57917116 | Msa0031220:three_prime_UTR | 25.0% |
| !!! | CCTTATGTTTTAATTTACAC+CGG | - | chr1_1:57917481-57917500 | Msa0031220:CDS | 25.0% |
| !! | ATTTTATTGTAGCTCAAAGT+TGG | - | chr1_1:57917955-57917974 | Msa0031220:CDS | 25.0% |
| !! | ATAGAAATACAACCTTTTCA+AGG | + | chr1_1:57918059-57918078 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTCATCAATCAG+TGG | - | chr1_1:57918080-57918099 | Msa0031220:CDS | 25.0% |
| !!! | TGACTTTATTTTTTGGCATT+TGG | - | chr1_1:57918155-57918174 | Msa0031220:intron | 25.0% |
| !! | TTATAATCAGTTCCAGTTTT+AGG | + | chr1_1:57918224-57918243 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACTTGTT+TGG | - | chr1_1:57918375-57918394 | Msa0031220:intron | 25.0% |
| !!! | TTCTTGAGTACAATTGATTT+TGG | - | chr1_1:57918401-57918420 | Msa0031220:intron | 25.0% |
| !! | TTGCTTCAACTATTGAATTT+TGG | - | chr1_1:57918429-57918448 | Msa0031220:intron | 25.0% |
| !! | AATCACAATATTTGCTCTTT+TGG | - | chr1_1:57918695-57918714 | Msa0031220:intron | 25.0% |
| !! | AGTCATGTATTTCAATTTTC+AGG | - | chr1_1:57918756-57918775 | Msa0031220:intron | 25.0% |
| ! | AAAACACAAATCTTAGTCTA+GGG | + | chr1_1:57918795-57918814 | None:intergenic | 25.0% |
| ! | AGATATGAACATTATCAATG+TGG | - | chr1_1:57918922-57918941 | Msa0031220:intron | 25.0% |
| ! | AAAATCTATTTAGCATAAGG+AGG | - | chr1_1:57919250-57919269 | Msa0031220:intron | 25.0% |
| ! | TACAAATCACATTAGATCAT+TGG | - | chr1_1:57919428-57919447 | Msa0031220:intron | 25.0% |
| ! | AAACAAAACAAAAACATGCA+CGG | + | chr1_1:57919487-57919506 | None:intergenic | 25.0% |
| !!! | TCATCAAAACTGTCATTTTT+AGG | - | chr1_1:57919823-57919842 | Msa0031220:intron | 25.0% |
| !!! | TAATTAGCATAGCTTTGTTT+AGG | + | chr1_1:57920068-57920087 | None:intergenic | 25.0% |
| !! | ATTCATGTTCTTTTTACTTC+AGG | - | chr1_1:57920087-57920106 | Msa0031220:intron | 25.0% |
| !! | TTCATGTTCTTTTTACTTCA+GGG | - | chr1_1:57920088-57920107 | Msa0031220:intron | 25.0% |
| ! | CAGGAAATTCAAATTTGAAA+TGG | + | chr1_1:57920327-57920346 | None:intergenic | 25.0% |
| !! | AAGAGTGTAGTATTTTGTAG+TGG | + | chr1_1:57916852-57916871 | None:intergenic | 30.0% |
| ! | GTTGACTTTGAATAATAACC+AGG | - | chr1_1:57917199-57917218 | Msa0031220:CDS | 30.0% |
| CCGGTGTAAATTAAAACATA+AGG | + | chr1_1:57917484-57917503 | None:intergenic | 30.0% | |
| GTGAACTACACAAAATTACA+GGG | + | chr1_1:57917527-57917546 | None:intergenic | 30.0% | |
| AGTGAACTACACAAAATTAC+AGG | + | chr1_1:57917528-57917547 | None:intergenic | 30.0% | |
| ! | TTTGGCATTTGGAATATGAA+AGG | - | chr1_1:57918166-57918185 | Msa0031220:intron | 30.0% |
| ! | ATTTGGAATATGAAAGGTGT+GGG | - | chr1_1:57918172-57918191 | Msa0031220:intron | 30.0% |
| GGATAAATTCATGCAAAAGT+GGG | + | chr1_1:57918474-57918493 | None:intergenic | 30.0% | |
| TGGATAAATTCATGCAAAAG+TGG | + | chr1_1:57918475-57918494 | None:intergenic | 30.0% | |
| !! | TAATTAACGAGCTTTGAGTT+TGG | + | chr1_1:57918583-57918602 | None:intergenic | 30.0% |
| CAAAGCTCGTTAATTACTAT+TGG | - | chr1_1:57918587-57918606 | Msa0031220:CDS | 30.0% | |
| CCAATAATAAGTGAATGACT+GGG | - | chr1_1:57918633-57918652 | Msa0031220:CDS | 30.0% | |
| CAAAACACAAATCTTAGTCT+AGG | + | chr1_1:57918796-57918815 | None:intergenic | 30.0% | |
| TGTATGATGATTGATGAGAT+TGG | - | chr1_1:57918838-57918857 | Msa0031220:CDS | 30.0% | |
| ! | CATATCTAGAGTCAGTATAA+AGG | + | chr1_1:57918909-57918928 | None:intergenic | 30.0% |
| AAATATTTCTCAGGACCATA+TGG | - | chr1_1:57919001-57919020 | Msa0031220:intron | 30.0% | |
| !! | TACATTGATTTCAAGTAGCA+TGG | + | chr1_1:57919170-57919189 | None:intergenic | 30.0% |
| TGAAATCAATGTACAAGTCT+AGG | - | chr1_1:57919177-57919196 | Msa0031220:intron | 30.0% | |
| GAAATCAATGTACAAGTCTA+GGG | - | chr1_1:57919178-57919197 | Msa0031220:intron | 30.0% | |
| AAATCAATGTACAAGTCTAG+GGG | - | chr1_1:57919179-57919198 | Msa0031220:intron | 30.0% | |
| !! | GTGAGGATTTGTTTACTTTT+CGG | - | chr1_1:57919221-57919240 | Msa0031220:CDS | 30.0% |
| !! | TGAGGATTTGTTTACTTTTC+GGG | - | chr1_1:57919222-57919241 | Msa0031220:CDS | 30.0% |
| ACTTTCTTTGTAATCATCAC+AGG | - | chr1_1:57919276-57919295 | Msa0031220:intron | 30.0% | |
| !!! | AGCTCTTTTGACTTTATTGA+TGG | - | chr1_1:57919385-57919404 | Msa0031220:intron | 30.0% |
| !!! | GCTCTTTTGACTTTATTGAT+GGG | - | chr1_1:57919386-57919405 | Msa0031220:intron | 30.0% |
| ! | GATCTAATGTGATTTGTAGA+AGG | + | chr1_1:57919426-57919445 | None:intergenic | 30.0% |
| AAGGAAAATCAATTGGATGA+AGG | - | chr1_1:57919537-57919556 | Msa0031220:intron | 30.0% | |
| TCGATGTATTTATCAGTTTG+TGG | + | chr1_1:57919718-57919737 | None:intergenic | 30.0% | |
| GAACTATTATCTGAACATTC+TGG | + | chr1_1:57920000-57920019 | None:intergenic | 30.0% | |
| TTAGGTAATAGGATCAGAAA+AGG | + | chr1_1:57920050-57920069 | None:intergenic | 30.0% | |
| !! | CATAGCTTTGTTTAGGTAAT+AGG | + | chr1_1:57920061-57920080 | None:intergenic | 30.0% |
| ! | TCAATCACTATATGATTTGC+AGG | + | chr1_1:57920346-57920365 | None:intergenic | 30.0% |
| ! | ATCTTTTAGACCTGATTTAC+TGG | - | chr1_1:57920406-57920425 | Msa0031220:CDS | 30.0% |
| TGATTTACTGGTCATAAAGT+GGG | - | chr1_1:57920418-57920437 | Msa0031220:CDS | 30.0% | |
| !!! | TGATGTTTTAATTGTGTGAC+TGG | - | chr1_1:57920457-57920476 | Msa0031220:intron | 30.0% |
| GTCAAGATGAAATGTAGTTA+TGG | + | chr1_1:57920497-57920516 | None:intergenic | 30.0% | |
| CATTTATGTTAGGAACATCA+AGG | + | chr1_1:57920519-57920538 | None:intergenic | 30.0% | |
| CTGTTTCAAGCATTTATGTT+AGG | + | chr1_1:57920529-57920548 | None:intergenic | 30.0% | |
| CTAACATAAATGCTTGAAAC+AGG | - | chr1_1:57920527-57920546 | Msa0031220:intron | 30.0% | |
| GATAACTTATCTACATCATC+TGG | + | chr1_1:57920732-57920751 | None:intergenic | 30.0% | |
| TAAGATGTTTACACCTCTAT+AGG | - | chr1_1:57920897-57920916 | Msa0031220:CDS | 30.0% | |
| TTCATTATTCATGCCTATAG+AGG | + | chr1_1:57920913-57920932 | None:intergenic | 30.0% | |
| ! | GGATATCCTCATTTTAGATA+CGG | - | chr1_1:57921116-57921135 | Msa0031220:intron | 30.0% |
| ! | TAATGACCGTATCTAAAATG+AGG | + | chr1_1:57921125-57921144 | None:intergenic | 30.0% |
| ATTCATCAACTACGATTTAC+CGG | + | chr1_1:57921216-57921235 | None:intergenic | 30.0% | |
| AATGCAGTCTAAGTGAATAA+AGG | - | chr1_1:57921394-57921413 | Msa0031220:exon | 30.0% | |
| AAAATGTAGTAGGCCATGTT+GGG | - | chr1_1:57916801-57916820 | Msa0031220:three_prime_UTR | 35.0% | |
| ACATAATCATGGCAACTATG+AGG | - | chr1_1:57917108-57917127 | Msa0031220:exon | 35.0% | |
| CATAATCATGGCAACTATGA+GGG | - | chr1_1:57917109-57917128 | Msa0031220:exon | 35.0% | |
| ATAATCATGGCAACTATGAG+GGG | - | chr1_1:57917110-57917129 | Msa0031220:exon | 35.0% | |
| AGTGAGAGTGGAAAGTTTAA+CGG | - | chr1_1:57917317-57917336 | Msa0031220:intron | 35.0% | |
| TTTAACGGGAAAATAGTGTG+TGG | - | chr1_1:57917332-57917351 | Msa0031220:intron | 35.0% | |
| !! | GGAATGAATTTGGTGTTTGT+TGG | - | chr1_1:57917356-57917375 | Msa0031220:intron | 35.0% |
| AACAAACTTACAGCCAAAAC+AGG | + | chr1_1:57917443-57917462 | None:intergenic | 35.0% | |
| TGTGTAGTTCACTGTGAATT+TGG | - | chr1_1:57917535-57917554 | Msa0031220:intron | 35.0% | |
| ACTAATACATGCATGGACAT+CGG | - | chr1_1:57917568-57917587 | Msa0031220:intron | 35.0% | |
| AATGTAATCACACGTGTTTG+TGG | - | chr1_1:57917649-57917668 | Msa0031220:CDS | 35.0% | |
| ! | TCCTTGTATTGATCATAACG+CGG | + | chr1_1:57917819-57917838 | None:intergenic | 35.0% |
| ATGATCAATACAAGGATGCA+TGG | - | chr1_1:57917823-57917842 | Msa0031220:intron | 35.0% | |
| TGATCAATACAAGGATGCAT+GGG | - | chr1_1:57917824-57917843 | Msa0031220:intron | 35.0% | |
| !! | CAACCTTTTCAAGGAAAAGT+GGG | + | chr1_1:57918050-57918069 | None:intergenic | 35.0% |
| !! | ACAACCTTTTCAAGGAAAAG+TGG | + | chr1_1:57918051-57918070 | None:intergenic | 35.0% |
| ! | CATTTGGAATATGAAAGGTG+TGG | - | chr1_1:57918171-57918190 | Msa0031220:intron | 35.0% |
| ! | TTTGGAATATGAAAGGTGTG+GGG | - | chr1_1:57918173-57918192 | Msa0031220:intron | 35.0% |
| AAACTCTATGGTCCTAAAAC+TGG | - | chr1_1:57918209-57918228 | Msa0031220:CDS | 35.0% | |
| !! | TAGATTCAGCTTGTTATGTC+AGG | - | chr1_1:57918256-57918275 | Msa0031220:CDS | 35.0% |
| AAAGTTAATAGAGGGAACAC+AGG | + | chr1_1:57918306-57918325 | None:intergenic | 35.0% | |
| !!! | TGTGTATTTTGGTTCCACTT+TGG | - | chr1_1:57918326-57918345 | Msa0031220:CDS | 35.0% |
| GCTATAATCACGATTTGTGA+AGG | + | chr1_1:57918614-57918633 | None:intergenic | 35.0% | |
| GCCAATAATAAGTGAATGAC+TGG | - | chr1_1:57918632-57918651 | Msa0031220:CDS | 35.0% | |
| CCCAGTCATTCACTTATTAT+TGG | + | chr1_1:57918636-57918655 | None:intergenic | 35.0% | |
| GACTTCTACTCAATTGTTTG+AGG | + | chr1_1:57918740-57918759 | None:intergenic | 35.0% | |
| CAATGTGGTTAACAACTTTC+AGG | - | chr1_1:57918937-57918956 | Msa0031220:intron | 35.0% | |
| ! | CTGTTTAAGTTCAAAACCCT+TGG | + | chr1_1:57918977-57918996 | None:intergenic | 35.0% |
| AACAGCAGCAAATATTTCTC+AGG | - | chr1_1:57918992-57919011 | Msa0031220:intron | 35.0% | |
| AATCAATGTACAAGTCTAGG+GGG | - | chr1_1:57919180-57919199 | Msa0031220:intron | 35.0% | |
| TTTACAAAAACGCAAAGGTG+AGG | - | chr1_1:57919204-57919223 | Msa0031220:intron | 35.0% | |
| AAAGAGCTTCTGAATTCATC+AGG | + | chr1_1:57919373-57919392 | None:intergenic | 35.0% | |
| ! | CTTTATTGATGGGTACGATA+CGG | - | chr1_1:57919396-57919415 | Msa0031220:intron | 35.0% |
| AAAACAAAAACATGCACGGT+TGG | + | chr1_1:57919483-57919502 | None:intergenic | 35.0% | |
| TGAAGGGAAGGAAAATCAAT+TGG | - | chr1_1:57919530-57919549 | Msa0031220:intron | 35.0% | |
| AAAATCAATTGGATGAAGGC+TGG | - | chr1_1:57919541-57919560 | Msa0031220:intron | 35.0% | |
| GACAATATCATTCGTTCAAC+TGG | - | chr1_1:57919649-57919668 | Msa0031220:intron | 35.0% | |
| ATGAGGAATCCACATTAAAC+AGG | + | chr1_1:57919777-57919796 | None:intergenic | 35.0% | |
| !! | ATGACAGTTTTGATGAGCAT+GGG | + | chr1_1:57919819-57919838 | None:intergenic | 35.0% |
| !! | AATGACAGTTTTGATGAGCA+TGG | + | chr1_1:57919820-57919839 | None:intergenic | 35.0% |
| ATCCCTTTGATAGGATTCAT+TGG | - | chr1_1:57919914-57919933 | Msa0031220:intron | 35.0% | |
| TGCCAATGAATCCTATCAAA+GGG | + | chr1_1:57919919-57919938 | None:intergenic | 35.0% | |
| ! | TTCTTTTTACTTCAGGGAAC+CGG | - | chr1_1:57920094-57920113 | Msa0031220:intron | 35.0% |
| !! | CAATTATTTTGTGAGCCAAG+GGG | + | chr1_1:57920201-57920220 | None:intergenic | 35.0% |
| !! | GCAATTATTTTGTGAGCCAA+GGG | + | chr1_1:57920202-57920221 | None:intergenic | 35.0% |
| !! | AGCAATTATTTTGTGAGCCA+AGG | + | chr1_1:57920203-57920222 | None:intergenic | 35.0% |
| TTGGCTCACAAAATAATTGC+TGG | - | chr1_1:57920202-57920221 | Msa0031220:CDS | 35.0% | |
| TGTAATTGAACTAGACCACA+AGG | + | chr1_1:57920262-57920281 | None:intergenic | 35.0% | |
| TCACACTGAGTGATCTAAAT+TGG | - | chr1_1:57920367-57920386 | Msa0031220:CDS | 35.0% | |
| ACTGAGTGATCTAAATTGGA+TGG | - | chr1_1:57920371-57920390 | Msa0031220:CDS | 35.0% | |
| CACTTTATGACCAGTAAATC+AGG | + | chr1_1:57920419-57920438 | None:intergenic | 35.0% | |
| CTGATTTACTGGTCATAAAG+TGG | - | chr1_1:57920417-57920436 | Msa0031220:CDS | 35.0% | |
| AATGTGGAGGTAAGAAGATA+TGG | - | chr1_1:57920627-57920646 | Msa0031220:intron | 35.0% | |
| !! | TTGGGTACCATAGGTTTTAA+GGG | + | chr1_1:57920772-57920791 | None:intergenic | 35.0% |
| AAAGTTTGATACAGCAACAG+CGG | + | chr1_1:57920858-57920877 | None:intergenic | 35.0% | |
| CAGTTCAGCTAATCATCAAT+GGG | - | chr1_1:57920951-57920970 | Msa0031220:CDS | 35.0% | |
| AATGGGTGATTTCTAATGCA+GGG | - | chr1_1:57920968-57920987 | Msa0031220:CDS | 35.0% | |
| ! | TGATGAATGAGTTCTAACGA+AGG | - | chr1_1:57921228-57921247 | Msa0031220:intron | 35.0% |
| AGTTCCAAGGTACAATGATT+AGG | + | chr1_1:57921256-57921275 | None:intergenic | 35.0% | |
| ACTTTCAAACAACCTGGAAT+AGG | + | chr1_1:57921420-57921439 | None:intergenic | 35.0% | |
| !! | ACATTTTGACACGTGGAAGA+AGG | + | chr1_1:57916788-57916807 | None:intergenic | 40.0% |
| TCCACGTGTCAAAATGTAGT+AGG | - | chr1_1:57916791-57916810 | Msa0031220:three_prime_UTR | 40.0% | |
| CAAAATGTAGTAGGCCATGT+TGG | - | chr1_1:57916800-57916819 | Msa0031220:three_prime_UTR | 40.0% | |
| ! | AAGAAGAGTGTAACCCAACA+TGG | + | chr1_1:57916817-57916836 | None:intergenic | 40.0% |
| CTCTTCTCATCATTGTTAGC+AGG | - | chr1_1:57916867-57916886 | Msa0031220:intron | 40.0% | |
| CAGATGAATCGAAACGACAA+GGG | + | chr1_1:57916995-57917014 | None:intergenic | 40.0% | |
| AACCAGGCGTTTACTTATGT+TGG | - | chr1_1:57917215-57917234 | Msa0031220:CDS | 40.0% | |
| AACCAACATAAGTAAACGCC+TGG | + | chr1_1:57917220-57917239 | None:intergenic | 40.0% | |
| GTGAGAGTGGAAAGTTTAAC+GGG | - | chr1_1:57917318-57917337 | Msa0031220:intron | 40.0% | |
| ! | AGTGTGTGGTGGAATGAATT+TGG | - | chr1_1:57917346-57917365 | Msa0031220:intron | 40.0% |
| AAACTTACAGCCAAAACAGG+TGG | + | chr1_1:57917440-57917459 | None:intergenic | 40.0% | |
| CACTGTGATTTCGTCAAATC+CGG | + | chr1_1:57917503-57917522 | None:intergenic | 40.0% | |
| TCGGATATGACACTGATATG+TGG | - | chr1_1:57917587-57917606 | Msa0031220:intron | 40.0% | |
| ACCGCGTTATGATCAATACA+AGG | - | chr1_1:57917815-57917834 | Msa0031220:intron | 40.0% | |
| TTCTTTCACTGCTACAAGAG+AGG | - | chr1_1:57918000-57918019 | Msa0031220:CDS | 40.0% | |
| !! | TCACCCACTTTTCCTTGAAA+AGG | - | chr1_1:57918044-57918063 | Msa0031220:CDS | 40.0% |
| ! | TTGGAATATGAAAGGTGTGG+GGG | - | chr1_1:57918174-57918193 | Msa0031220:intron | 40.0% |
| AAGACCGAGTCAAAACTCTA+TGG | - | chr1_1:57918197-57918216 | Msa0031220:intron | 40.0% | |
| !!! | AGGACCATAGAGTTTTGACT+CGG | + | chr1_1:57918204-57918223 | None:intergenic | 40.0% |
| !!! | GTATTTTGGTTCCACTTTGG+AGG | - | chr1_1:57918329-57918348 | Msa0031220:CDS | 40.0% |
| TCAGTTTGAATCCTCCAAAG+TGG | + | chr1_1:57918343-57918362 | None:intergenic | 40.0% | |
| !! | GAGCTTTGAGTTTGGTTATG+CGG | + | chr1_1:57918575-57918594 | None:intergenic | 40.0% |
| ! | GTGATAGTGATTCAGATGAC+AGG | + | chr1_1:57918674-57918693 | None:intergenic | 40.0% |
| !!! | ACTTTTTTATGTCTTCCCGC+AGG | - | chr1_1:57919098-57919117 | Msa0031220:intron | 40.0% |
| TAGTCTTCGTTGCCAATGAT+TGG | - | chr1_1:57919129-57919148 | Msa0031220:intron | 40.0% | |
| TATTCATAACATCGCCTACC+AGG | - | chr1_1:57919309-57919328 | Msa0031220:intron | 40.0% | |
| ATTCATAACATCGCCTACCA+GGG | - | chr1_1:57919310-57919329 | Msa0031220:intron | 40.0% | |
| !! | AAAACATGCACGGTTGGTAA+TGG | + | chr1_1:57919477-57919496 | None:intergenic | 40.0% |
| AGGTATACTACACCTGTGAA+GGG | - | chr1_1:57919514-57919533 | Msa0031220:intron | 40.0% | |
| ! | TTGATTTTCCTTCCCTTCAC+AGG | + | chr1_1:57919529-57919548 | None:intergenic | 40.0% |
| TGTAAGTCCACATTATGCCA+AGG | - | chr1_1:57919591-57919610 | Msa0031220:intron | 40.0% | |
| ACAAGTTCCTTGGCATAATG+TGG | + | chr1_1:57919601-57919620 | None:intergenic | 40.0% | |
| ! | TATGCCAAGGAACTTGTTTC+CGG | - | chr1_1:57919604-57919623 | Msa0031220:intron | 40.0% |
| ATTCGTTCAACTGGTATCAC+TGG | - | chr1_1:57919658-57919677 | Msa0031220:intron | 40.0% | |
| TAGCACCTTCCTGTTTAATG+TGG | - | chr1_1:57919765-57919784 | Msa0031220:intron | 40.0% | |
| GGAATCCACATTAAACAGGA+AGG | + | chr1_1:57919773-57919792 | None:intergenic | 40.0% | |
| TGTGGATTCCTCATTTGACA+TGG | - | chr1_1:57919783-57919802 | Msa0031220:intron | 40.0% | |
| TCAATGGTCCATGTCAAATG+AGG | + | chr1_1:57919794-57919813 | None:intergenic | 40.0% | |
| TTGATGAGCATGGGTTTCAA+TGG | + | chr1_1:57919810-57919829 | None:intergenic | 40.0% | |
| AAAGGGATACTCTTGTCAAC+AGG | + | chr1_1:57919902-57919921 | None:intergenic | 40.0% | |
| !! | GACAAGAGTATCCCTTTGAT+AGG | - | chr1_1:57919905-57919924 | Msa0031220:intron | 40.0% |
| CTGCCAATGAATCCTATCAA+AGG | + | chr1_1:57919920-57919939 | None:intergenic | 40.0% | |
| CTTTGATAGGATTCATTGGC+AGG | - | chr1_1:57919918-57919937 | Msa0031220:intron | 40.0% | |
| ! | CTTCTCCATGATCTTTTTGC+CGG | + | chr1_1:57920116-57920135 | None:intergenic | 40.0% |
| ATCGGGGTAGCAAAATTCAA+TGG | - | chr1_1:57920175-57920194 | Msa0031220:CDS | 40.0% | |
| CACAAGGCTCAAATCTACTT+GGG | + | chr1_1:57920246-57920265 | None:intergenic | 40.0% | |
| CAATTACATGCCATGCCATA+TGG | - | chr1_1:57920274-57920293 | Msa0031220:intron | 40.0% | |
| ATAAGCTCTACCGTTCCATA+TGG | + | chr1_1:57920292-57920311 | None:intergenic | 40.0% | |
| CTTGTTGACACTGTGAAAGA+AGG | - | chr1_1:57920576-57920595 | Msa0031220:intron | 40.0% | |
| ACTGTGAAAGAAGGCTATAC+AGG | - | chr1_1:57920585-57920604 | Msa0031220:intron | 40.0% | |
| ! | CTTGGGTACCATAGGTTTTA+AGG | + | chr1_1:57920773-57920792 | None:intergenic | 40.0% |
| GATTATCTCTTGCATGGCTT+GGG | + | chr1_1:57920790-57920809 | None:intergenic | 40.0% | |
| ! | GTTCTGGATTATCTCTTGCA+TGG | + | chr1_1:57920796-57920815 | None:intergenic | 40.0% |
| AGAGATAATCCAGAACTGCA+TGG | - | chr1_1:57920800-57920819 | Msa0031220:CDS | 40.0% | |
| GCAGTTCAGCTAATCATCAA+TGG | - | chr1_1:57920950-57920969 | Msa0031220:CDS | 40.0% | |
| CAATGGGTGATTTCTAATGC+AGG | - | chr1_1:57920967-57920986 | Msa0031220:CDS | 40.0% | |
| GATATCCCTATTGATGCTCA+TGG | + | chr1_1:57921103-57921122 | None:intergenic | 40.0% | |
| GCAGAGTGCAGTAAGATTAT+AGG | - | chr1_1:57921178-57921197 | Msa0031220:intron | 40.0% | |
| GGAACCTAATCATTGTACCT+TGG | - | chr1_1:57921249-57921268 | Msa0031220:intron | 40.0% | |
| GTACCTTGGAACTTAGTTGA+AGG | - | chr1_1:57921263-57921282 | Msa0031220:intron | 40.0% | |
| AGTGAATAAAGGCCTATTCC+AGG | - | chr1_1:57921405-57921424 | Msa0031220:exon | 40.0% | |
| CGTGTAACTTTCAAACAACC+TGG | + | chr1_1:57921426-57921445 | None:intergenic | 40.0% | |
| AAGCATGAGATTAACGCACA+GGG | - | chr1_1:57921447-57921466 | Msa0031220:five_prime_UTR | 40.0% | |
| !! | GCCTACTACATTTTGACACG+TGG | + | chr1_1:57916795-57916814 | None:intergenic | 45.0% |
| GCAGATGAATCGAAACGACA+AGG | + | chr1_1:57916996-57917015 | None:intergenic | 45.0% | |
| AACTATGAGGGGTTCTTCTG+TGG | - | chr1_1:57917121-57917140 | Msa0031220:exon | 45.0% | |
| ACTATGAGGGGTTCTTCTGT+GGG | - | chr1_1:57917122-57917141 | Msa0031220:CDS | 45.0% | |
| CTCTTCTTCCCTGGAAATTG+AGG | + | chr1_1:57917154-57917173 | None:intergenic | 45.0% | |
| TAGTCTCTACTCTTCTTCCC+TGG | + | chr1_1:57917163-57917182 | None:intergenic | 45.0% | |
| ACGAGTGAGAAAAGTGAGAG+TGG | - | chr1_1:57917305-57917324 | Msa0031220:intron | 45.0% | |
| AACGGGAAAATAGTGTGTGG+TGG | - | chr1_1:57917335-57917354 | Msa0031220:intron | 45.0% | |
| ! | GTGTTTGTTGGAGCTGAAGT+TGG | - | chr1_1:57917368-57917387 | Msa0031220:intron | 45.0% |
| CGTGTTTGTGGACATATGCA+CGG | - | chr1_1:57917661-57917680 | Msa0031220:intron | 45.0% | |
| GCGGTGATACAGTCATAACA+CGG | + | chr1_1:57917800-57917819 | None:intergenic | 45.0% | |
| !! | AGGAGTTGATCGCGTTTTTG+TGG | - | chr1_1:57918020-57918039 | Msa0031220:CDS | 45.0% |
| TTTCTCAGGACCATATGGTG+TGG | - | chr1_1:57919006-57919025 | Msa0031220:intron | 45.0% | |
| AAGAGCAGTGTGCCAATCAT+TGG | + | chr1_1:57919144-57919163 | None:intergenic | 45.0% | |
| GGGGCTTTACAAAAACGCAA+AGG | - | chr1_1:57919199-57919218 | Msa0031220:intron | 45.0% | |
| CAGGTATACTACACCTGTGA+AGG | - | chr1_1:57919513-57919532 | Msa0031220:intron | 45.0% | |
| ATACTACACCTGTGAAGGGA+AGG | - | chr1_1:57919518-57919537 | Msa0031220:intron | 45.0% | |
| ACTTACAGTGAACACTCGGT+CGG | + | chr1_1:57919578-57919597 | None:intergenic | 45.0% | |
| GTGGACTTACAGTGAACACT+CGG | + | chr1_1:57919582-57919601 | None:intergenic | 45.0% | |
| TTCTCCGGAAACAAGTTCCT+TGG | + | chr1_1:57919611-57919630 | None:intergenic | 45.0% | |
| ! | AGAAGACAGAGGTGTGGAAT+TGG | - | chr1_1:57919627-57919646 | Msa0031220:intron | 45.0% |
| GGTATCACTGGTATCGTGAA+TGG | - | chr1_1:57919670-57919689 | Msa0031220:intron | 45.0% | |
| GAAAGAAGCTCTTCAAGCTG+AGG | - | chr1_1:57919868-57919887 | Msa0031220:intron | 45.0% | |
| ACATATCCTGGCAAGGCAAT+CGG | - | chr1_1:57920157-57920176 | Msa0031220:intron | 45.0% | |
| AGCAAAATTCAATGGCCCCT+TGG | - | chr1_1:57920183-57920202 | Msa0031220:CDS | 45.0% | |
| CCACAAGGCTCAAATCTACT+TGG | + | chr1_1:57920247-57920266 | None:intergenic | 45.0% | |
| CCAAGTAGATTTGAGCCTTG+TGG | - | chr1_1:57920244-57920263 | Msa0031220:intron | 45.0% | |
| ACATGCCATGCCATATGGAA+CGG | - | chr1_1:57920279-57920298 | Msa0031220:intron | 45.0% | |
| !! | CCACCAGTTGATGAAACGAT+GGG | + | chr1_1:57920555-57920574 | None:intergenic | 45.0% |
| !! | ACCACCAGTTGATGAAACGA+TGG | + | chr1_1:57920556-57920575 | None:intergenic | 45.0% |
| ACGAGAGCCCTTAAAACCTA+TGG | - | chr1_1:57920762-57920781 | Msa0031220:intron | 45.0% | |
| GGATTATCTCTTGCATGGCT+TGG | + | chr1_1:57920791-57920810 | None:intergenic | 45.0% | |
| ATCTCCTCTCCATCTATTCC+AGG | + | chr1_1:57921049-57921068 | None:intergenic | 45.0% | |
| TCCACTGGCAAAGGAAAATG+TGG | - | chr1_1:57921072-57921091 | Msa0031220:CDS | 45.0% | |
| CCACTCCATGAGCATCAATA+GGG | - | chr1_1:57921095-57921114 | Msa0031220:CDS | 45.0% | |
| TTATAGGCATAGCCTCAAGC+CGG | - | chr1_1:57921194-57921213 | Msa0031220:intron | 45.0% | |
| !! | AACTACGATTTACCGGCTTG+AGG | + | chr1_1:57921209-57921228 | None:intergenic | 45.0% |
| GGACCTTCAACTAAGTTCCA+AGG | + | chr1_1:57921269-57921288 | None:intergenic | 45.0% | |
| CAAGCATGAGATTAACGCAC+AGG | - | chr1_1:57921446-57921465 | Msa0031220:five_prime_UTR | 45.0% | |
| !!! | AAATAATTTTTTTAAAAGAA+AGG | - | chr1_1:57917616-57917635 | Msa0031220:CDS | 5.0% |
| TGTTAGCAGGTACACTCTCC+AGG | - | chr1_1:57916880-57916899 | Msa0031220:intron | 50.0% | |
| TGATTACTCACCAGTGCTCC+TGG | + | chr1_1:57916901-57916920 | None:intergenic | 50.0% | |
| CGACAAGGGTTGAATCTCAG+TGG | + | chr1_1:57916981-57917000 | None:intergenic | 50.0% | |
| GGTGCATGCCTCAATTTCCA+GGG | - | chr1_1:57917143-57917162 | Msa0031220:CDS | 50.0% | |
| TTGGAGCTGAAGTTGGACCT+TGG | - | chr1_1:57917375-57917394 | Msa0031220:intron | 50.0% | |
| GTTGGACCTTGGAGTAAGAC+TGG | - | chr1_1:57917386-57917405 | Msa0031220:CDS | 50.0% | |
| AGTCCACCAGTCTTACTCCA+AGG | + | chr1_1:57917395-57917414 | None:intergenic | 50.0% | |
| !! | TGGAGTAAGACTGGTGGACT+TGG | - | chr1_1:57917395-57917414 | Msa0031220:CDS | 50.0% |
| !! | GGTGGACTTGGTGATGTTCT+TGG | - | chr1_1:57917407-57917426 | Msa0031220:CDS | 50.0% |
| !! | GGACTTGGTGATGTTCTTGG+TGG | - | chr1_1:57917410-57917429 | Msa0031220:CDS | 50.0% |
| !!! | TGGTGGACTTCCACCTGTTT+TGG | - | chr1_1:57917427-57917446 | Msa0031220:CDS | 50.0% |
| GGATACTGATGTGTCTGTCG+AGG | - | chr1_1:57917845-57917864 | Msa0031220:intron | 50.0% | |
| GACTAGAGAGCCACACCATA+TGG | + | chr1_1:57919019-57919038 | None:intergenic | 50.0% | |
| AAGACTACATCTTCGCCTGC+GGG | + | chr1_1:57919116-57919135 | None:intergenic | 50.0% | |
| GAAGACTACATCTTCGCCTG+CGG | + | chr1_1:57919117-57919136 | None:intergenic | 50.0% | |
| CTTGTTTCCGGAGAAGACAG+AGG | - | chr1_1:57919616-57919635 | Msa0031220:intron | 50.0% | |
| TTCCACACCTCTGTCTTCTC+CGG | + | chr1_1:57919626-57919645 | None:intergenic | 50.0% | |
| CACTGGTATCGTGAATGGCA+TGG | - | chr1_1:57919675-57919694 | Msa0031220:intron | 50.0% | |
| ATGGCATGGATAATCGCGAG+TGG | - | chr1_1:57919689-57919708 | Msa0031220:intron | 50.0% | |
| GAAGCTCTTCAAGCTGAGGT+TGG | - | chr1_1:57919872-57919891 | Msa0031220:intron | 50.0% | |
| GGGAACCGGCAAAAAGATCA+TGG | - | chr1_1:57920108-57920127 | Msa0031220:intron | 50.0% | |
| GGAGAAGCAAATTGAGCAGC+TGG | - | chr1_1:57920129-57920148 | Msa0031220:intron | 50.0% | |
| GAAGCAAATTGAGCAGCTGG+AGG | - | chr1_1:57920132-57920151 | Msa0031220:intron | 50.0% | |
| CAGCTGGAGGTAACATATCC+TGG | - | chr1_1:57920145-57920164 | Msa0031220:intron | 50.0% | |
| GGAGGTAACATATCCTGGCA+AGG | - | chr1_1:57920150-57920169 | Msa0031220:intron | 50.0% | |
| CATATCCTGGCAAGGCAATC+GGG | - | chr1_1:57920158-57920177 | Msa0031220:intron | 50.0% | |
| ATATCCTGGCAAGGCAATCG+GGG | - | chr1_1:57920159-57920178 | Msa0031220:intron | 50.0% | |
| CTCTACCGTTCCATATGGCA+TGG | + | chr1_1:57920287-57920306 | None:intergenic | 50.0% | |
| GTGCCCATCGTTTCATCAAC+TGG | - | chr1_1:57920549-57920568 | Msa0031220:intron | 50.0% | |
| CCCATCGTTTCATCAACTGG+TGG | - | chr1_1:57920552-57920571 | Msa0031220:intron | 50.0% | |
| !!! | GGTTTTAAGGGCTCTCGTGA+CGG | + | chr1_1:57920760-57920779 | None:intergenic | 50.0% |
| ! | TTGCATGGCTTGGGTACCAT+AGG | + | chr1_1:57920781-57920800 | None:intergenic | 50.0% |
| AGTCTTGAGCCATGCAGTTC+TGG | + | chr1_1:57920812-57920831 | None:intergenic | 50.0% | |
| ! | GCATGGCTCAAGACTTTTCG+TGG | - | chr1_1:57920817-57920836 | Msa0031220:CDS | 50.0% |
| ! | GGCTCAAGACTTTTCGTGGA+AGG | - | chr1_1:57920821-57920840 | Msa0031220:CDS | 50.0% |
| CAGTGCGTTCTCCCATAGTT+TGG | + | chr1_1:57920999-57921018 | None:intergenic | 50.0% | |
| GGCAACGAACCTGGAATAGA+TGG | - | chr1_1:57921037-57921056 | Msa0031220:CDS | 50.0% | |
| CGAACCTGGAATAGATGGAG+AGG | - | chr1_1:57921042-57921061 | Msa0031220:CDS | 50.0% | |
| ! | GCCACATTTTCCTTTGCCAG+TGG | + | chr1_1:57921076-57921095 | None:intergenic | 50.0% |
| GCCACTCCATGAGCATCAAT+AGG | - | chr1_1:57921094-57921113 | Msa0031220:CDS | 50.0% | |
| CCCTATTGATGCTCATGGAG+TGG | + | chr1_1:57921098-57921117 | None:intergenic | 50.0% | |
| GGGTGCATGCCTCAATTTCC+AGG | - | chr1_1:57917142-57917161 | Msa0031220:CDS | 55.0% | |
| CTCTCAACAAGCTGCACGTG+CGG | - | chr1_1:57917246-57917265 | Msa0031220:intron | 55.0% | |
| AGACGATGAAGCAGCACGTG+CGG | + | chr1_1:57917276-57917295 | None:intergenic | 55.0% | |
| GGACCTTGGAGTAAGACTGG+TGG | - | chr1_1:57917389-57917408 | Msa0031220:CDS | 55.0% | |
| CAACTTTCAGGCCGCACTTG+AGG | - | chr1_1:57918949-57918968 | Msa0031220:intron | 55.0% | |
| !! | AACCCTTGGTGCCTCAAGTG+CGG | + | chr1_1:57918963-57918982 | None:intergenic | 55.0% |
| ! | AGAGGCATGTCTTCCCTGGT+AGG | + | chr1_1:57919326-57919345 | None:intergenic | 55.0% |
| CCAGGGAAGACATGCCTCTT+CGG | - | chr1_1:57919327-57919346 | Msa0031220:intron | 55.0% | |
| GAGAAGAGCGAAGTCCGAAG+AGG | + | chr1_1:57919344-57919363 | None:intergenic | 55.0% | |
| TTCCGGAGAAGACAGAGGTG+TGG | - | chr1_1:57919621-57919640 | Msa0031220:intron | 55.0% | |
| GGCAGGCTAGAAGAGCAGAA+AGG | - | chr1_1:57919935-57919954 | Msa0031220:intron | 55.0% | |
| GGCTATACAGGATTCCACGC+TGG | - | chr1_1:57920597-57920616 | Msa0031220:intron | 55.0% | |
| TGCAGGGACCAGCCAAACTA+TGG | - | chr1_1:57920984-57921003 | Msa0031220:CDS | 55.0% | |
| GCAGGGACCAGCCAAACTAT+GGG | - | chr1_1:57920985-57921004 | Msa0031220:CDS | 55.0% | |
| GCGTTCTCCCATAGTTTGGC+TGG | + | chr1_1:57920995-57921014 | None:intergenic | 55.0% | |
| TGGAGAGGAGATTGCTCCAC+TGG | - | chr1_1:57921057-57921076 | Msa0031220:CDS | 55.0% | |
| GGAGATTGCTCCACTGGCAA+AGG | - | chr1_1:57921063-57921082 | Msa0031220:CDS | 55.0% | |
| ! | GGTACACTCTCCAGGAGCAC+TGG | - | chr1_1:57916888-57916907 | Msa0031220:intron | 60.0% |
| ! | CCGAAGAGGCATGTCTTCCC+TGG | + | chr1_1:57919330-57919349 | None:intergenic | 60.0% |
| CCACATTGAACGCTCCAGCG+TGG | + | chr1_1:57920614-57920633 | None:intergenic | 60.0% | |
| ! | CCACGCTGGAGCGTTCAATG+TGG | - | chr1_1:57920611-57920630 | Msa0031220:intron | 60.0% |
| ! | CGCTGGAGCGTTCAATGTGG+AGG | - | chr1_1:57920614-57920633 | Msa0031220:intron | 60.0% |
| GAACGCACTGTTGAGCCTCG+AGG | - | chr1_1:57921009-57921028 | Msa0031220:CDS | 60.0% | |
| ! | AGGCCGCACTTGAGGCACCA+AGG | - | chr1_1:57918957-57918976 | Msa0031220:intron | 65.0% |
| ! | GGCCGCACTTGAGGCACCAA+GGG | - | chr1_1:57918958-57918977 | Msa0031220:intron | 65.0% |
| GCTACCCCGATTGCCTTGCC+AGG | + | chr1_1:57920166-57920185 | None:intergenic | 65.0% | |
| CTGTTGAGCCTCGAGGTCGC+AGG | - | chr1_1:57921016-57921035 | Msa0031220:CDS | 65.0% | |
| GTTCGTTGCCTGCGACCTCG+AGG | + | chr1_1:57921027-57921046 | None:intergenic | 65.0% | |
| GAGGTCGCAGGCAACGAACC+TGG | - | chr1_1:57921028-57921047 | Msa0031220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57916757 | 57921470 | 57916757 | ID=Msa0031220;Name=Msa0031220 |
| chr1_1 | mRNA | 57916757 | 57921470 | 57916757 | ID=Msa0031220-mRNA-1;Parent=Msa0031220;Name=Msa0031220-mRNA-1;_AED=0.10;_eAED=0.10;_QI=59|1|1|1|0.92|0.86|15|326|646 |
| chr1_1 | exon | 57916757 | 57916871 | 57916757 | ID=Msa0031220-mRNA-1:exon:17587;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57916911 | 57917238 | 57916911 | ID=Msa0031220-mRNA-1:exon:17586;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57917385 | 57917513 | 57917385 | ID=Msa0031220-mRNA-1:exon:17585;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57917592 | 57917678 | 57917592 | ID=Msa0031220-mRNA-1:exon:17584;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57917927 | 57918118 | 57917927 | ID=Msa0031220-mRNA-1:exon:17583;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57918206 | 57918382 | 57918206 | ID=Msa0031220-mRNA-1:exon:17582;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57918468 | 57918711 | 57918468 | ID=Msa0031220-mRNA-1:exon:17581;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57918820 | 57918929 | 57918820 | ID=Msa0031220-mRNA-1:exon:17580;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57919007 | 57919107 | 57919007 | ID=Msa0031220-mRNA-1:exon:17579;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57919205 | 57919268 | 57919205 | ID=Msa0031220-mRNA-1:exon:17578;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57919950 | 57920039 | 57919950 | ID=Msa0031220-mRNA-1:exon:17577;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57920162 | 57920260 | 57920162 | ID=Msa0031220-mRNA-1:exon:17576;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57920361 | 57920441 | 57920361 | ID=Msa0031220-mRNA-1:exon:17575;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57920776 | 57921131 | 57920776 | ID=Msa0031220-mRNA-1:exon:17574;Parent=Msa0031220-mRNA-1 |
| chr1_1 | exon | 57921318 | 57921470 | 57921318 | ID=Msa0031220-mRNA-1:exon:17573;Parent=Msa0031220-mRNA-1 |
| chr1_1 | five_prime_UTR | 57921412 | 57921470 | 57921412 | ID=Msa0031220-mRNA-1:five_prime_utr;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57921318 | 57921411 | 57921318 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57920776 | 57921131 | 57920776 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57920361 | 57920441 | 57920361 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57920162 | 57920260 | 57920162 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57919950 | 57920039 | 57919950 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57919205 | 57919268 | 57919205 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57919007 | 57919107 | 57919007 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57918820 | 57918929 | 57918820 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57918468 | 57918711 | 57918468 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57918206 | 57918382 | 57918206 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57917927 | 57918118 | 57917927 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57917592 | 57917678 | 57917592 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57917385 | 57917513 | 57917385 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | CDS | 57917122 | 57917238 | 57917122 | ID=Msa0031220-mRNA-1:cds;Parent=Msa0031220-mRNA-1 |
| chr1_1 | three_prime_UTR | 57916911 | 57917121 | 57916911 | ID=Msa0031220-mRNA-1:three_prime_utr;Parent=Msa0031220-mRNA-1 |
| chr1_1 | three_prime_UTR | 57916757 | 57916871 | 57916757 | ID=Msa0031220-mRNA-1:three_prime_utr;Parent=Msa0031220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
