AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138860 MtrunA17_Chr4g0067951 97.468 158 4 0 1 158 1 158 2.68e-108 305
Msa0138860 MtrunA17_Chr6g0462311 96.203 158 6 0 1 158 1 158 4.08e-107 302
Msa0138860 MtrunA17_Chr6g0462291 84.049 163 21 1 1 158 1 163 1.48e-92 266
Msa0138860 MtrunA17_Chr2g0295064 74.051 158 41 0 1 158 68 225 2.60e-81 239
Msa0138860 MtrunA17_Chr2g0295021 72.611 157 43 0 1 157 1 157 5.38e-80 233
Msa0138860 MtrunA17_Chr2g0295001 72.611 157 43 0 1 157 1 157 5.38e-80 233
Msa0138860 MtrunA17_Chr2g0295051 70.064 157 47 0 1 157 1 157 7.62e-78 228
Msa0138860 MtrunA17_Chr2g0295041 68.354 158 50 0 1 158 1 158 1.47e-75 222
Msa0138860 MtrunA17_Chr2g0295141 63.694 157 57 0 1 157 1 157 1.35e-68 204
Msa0138860 MtrunA17_Chr2g0295104 64.331 157 56 0 1 157 1 157 2.52e-68 204
Msa0138860 MtrunA17_Chr2g0295091 64.331 157 56 0 1 157 1 157 8.50e-68 202
Msa0138860 MtrunA17_Chr2g0295124 64.968 157 55 0 1 157 1 157 8.66e-67 200
Msa0138860 MtrunA17_Chr2g0295081 54.140 157 72 0 1 157 1 157 1.81e-54 169
Msa0138860 MtrunA17_Chr4g0067921 45.963 161 82 4 1 158 1 159 2.51e-37 125
Msa0138860 MtrunA17_Chr2g0295211 37.179 156 97 1 1 155 1 156 2.68e-33 115
Msa0138860 MtrunA17_Chr4g0067841 36.943 157 98 1 1 156 1 157 1.02e-32 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACAACATAAATATTATT+TGG 0.112159 1_3:-72082798 None:intergenic
CCATGTTTGGTTTGATAATT+TGG 0.145886 1_3:-72081926 None:intergenic
AAAACAACATAAATCTTATT+TGG 0.160723 1_3:-72082768 None:intergenic
TTTGGTGATGAAGTTGTAAA+AGG 0.190525 1_3:-72081908 None:intergenic
CTCCATCAATTGCATCAATT+TGG 0.202998 1_3:-72082295 None:intergenic
TTGATGGCATCAACAGCTTT+TGG 0.227157 1_3:-72082038 None:intergenic
GATATCATTTGAAGCGAAAT+TGG 0.228714 1_3:+72082379 Msa0138860:CDS
TAGATGGATTAGTTGTAATT+AGG 0.259719 1_3:-72082551 None:intergenic
GGCCATTGAGGGTTATGTTT+TGG 0.293726 1_3:+72082523 Msa0138860:CDS
AACGGTTTCAACACTCTTGA+TGG 0.328088 1_3:-72082054 None:intergenic
GGTCCAAATGGAGGGTCTAT+TGG 0.333504 1_3:+72082407 Msa0138860:CDS
TCCTTTGGTTTGATATTTAA+CGG 0.347214 1_3:-72082438 None:intergenic
TGTTGTTAAGTTTATTTACT+TGG 0.354046 1_3:+72082853 Msa0138860:three_prime_UTR
CACCAAATTGATGCAATTGA+TGG 0.359913 1_3:+72082293 Msa0138860:CDS
TAGTAGGTAGACTTGGTAGA+TGG 0.361526 1_3:-72082567 None:intergenic
GTCCAAATGGAGGGTCTATT+GGG 0.390136 1_3:+72082408 Msa0138860:CDS
AATTGGCTTAGCATCTCCTT+TGG 0.398977 1_3:-72082453 None:intergenic
TATAGTATAGTTGGAGGAGT+AGG 0.400784 1_3:+72082335 Msa0138860:CDS
TGCAATTGATGGAGCAAACT+TGG 0.407405 1_3:+72082304 Msa0138860:CDS
AATCAATAAATTAATACAAA+TGG 0.412812 1_3:+72082736 Msa0138860:three_prime_UTR
TTCCCAATAGACCCTCCATT+TGG 0.416216 1_3:-72082410 None:intergenic
AATGTGAATACACCCATGTT+TGG 0.426195 1_3:-72081939 None:intergenic
AGAGCTTTGTAAAGCTTAGC+AGG 0.435032 1_3:-72081990 None:intergenic
AACGAAAGTGAGCTTCTTGA+CGG 0.435771 1_3:-72082099 None:intergenic
ACAGATGATAGTAGATTAGT+AGG 0.436784 1_3:-72082583 None:intergenic
TTGGTGATGAAGTTGTAAAA+GGG 0.438115 1_3:-72081907 None:intergenic
AAGAAGCTCACTTTCGTTGA+GGG 0.454166 1_3:+72082104 Msa0138860:CDS
GGATTAGTTGTAATTAGGAT+TGG 0.464473 1_3:-72082546 None:intergenic
GTGAGCTTCTTGACGGTGCC+AGG 0.467117 1_3:-72082092 None:intergenic
CCAAATTATCAAACCAAACA+TGG 0.473191 1_3:+72081926 Msa0138860:exon
GGTTGAGGAAGGCAAGGCAA+AGG 0.481278 1_3:+72082484 Msa0138860:CDS
GTTGAAACCGTTGAGGGAAA+TGG 0.483004 1_3:+72082065 Msa0138860:CDS
TATGTATGTTGGTGTGTGGC+TGG 0.486530 1_3:-72081846 None:intergenic
TTTGAAGCGAAATTGGTTGA+AGG 0.487809 1_3:+72082386 Msa0138860:CDS
GGGTATAACTATAGTATAGT+TGG 0.489142 1_3:+72082326 Msa0138860:CDS
ATAGTATAGTTGGAGGAGTA+GGG 0.491450 1_3:+72082336 Msa0138860:CDS
AGTAGATTAGTAGGTAGACT+TGG 0.500749 1_3:-72082574 None:intergenic
AGATGCTAAGCCAATTGAAA+AGG 0.515464 1_3:+72082460 Msa0138860:CDS
GTTGAGGGAAATGGTGGTCC+TGG 0.519714 1_3:+72082074 Msa0138860:CDS
GCCAATTGAAAAGGAGGTTG+AGG 0.520188 1_3:+72082469 Msa0138860:CDS
GGCCAAAACATAACCCTCAA+TGG 0.521409 1_3:-72082525 None:intergenic
CAAGAAGCTCACTTTCGTTG+AGG 0.534631 1_3:+72082103 Msa0138860:CDS
GCAATTGATGGAGCAAACTT+GGG 0.541306 1_3:+72082305 Msa0138860:CDS
GTTGAGGAAGGCAAGGCAAA+GGG 0.544771 1_3:+72082485 Msa0138860:CDS
AAGAGTGTTGAAACCGTTGA+GGG 0.546792 1_3:+72082059 Msa0138860:CDS
AATTTGGTGCAACACGTACA+AGG 0.554848 1_3:-72082279 None:intergenic
TGAGAACAAGATATGTATGT+TGG 0.557908 1_3:-72081857 None:intergenic
CAACAAAACACCAAATCTCC+TGG 0.558696 1_3:-72082699 None:intergenic
GGATGATATCATCAGAGTCA+TGG 0.567722 1_3:-72082016 None:intergenic
AAATTGGTTGAAGGTCCAAA+TGG 0.568255 1_3:+72082395 Msa0138860:CDS
AGGACCACCATTTCCCTCAA+CGG 0.572788 1_3:-72082072 None:intergenic
TATAACTATAGTATAGTTGG+AGG 0.584231 1_3:+72082329 Msa0138860:CDS
AGCAGGAGCAACTGTAGAGG+TGG 0.585421 1_3:-72081973 None:intergenic
CTTAGCAGGAGCAACTGTAG+AGG 0.591469 1_3:-72081976 None:intergenic
TGCTAAGCCAATTGAAAAGG+AGG 0.591628 1_3:+72082463 Msa0138860:CDS
ACCGTTAAATATCAAACCAA+AGG 0.596206 1_3:+72082437 Msa0138860:CDS
AGGAGTAGGGTTGCCAGACA+CGG 0.598102 1_3:+72082349 Msa0138860:CDS
TGGTTGAAGGTCCAAATGGA+GGG 0.601542 1_3:+72082399 Msa0138860:CDS
TTGGTTGAAGGTCCAAATGG+AGG 0.609517 1_3:+72082398 Msa0138860:CDS
ATTGAAAAGGAGGTTGAGGA+AGG 0.616285 1_3:+72082473 Msa0138860:CDS
CAAGAGTGTTGAAACCGTTG+AGG 0.622991 1_3:+72082058 Msa0138860:CDS
AAAGGAGGTTGAGGAAGGCA+AGG 0.629508 1_3:+72082478 Msa0138860:CDS
CAATTGATGGAGCAAACTTG+GGG 0.644212 1_3:+72082306 Msa0138860:CDS
CAAATTATCAAACCAAACAT+GGG 0.651382 1_3:+72081927 Msa0138860:exon
AAGATATGTATGTTGGTGTG+TGG 0.694182 1_3:-72081850 None:intergenic
GAAACCGTTGAGGGAAATGG+TGG 0.710996 1_3:+72082068 Msa0138860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATAAATTAATACAAA+TGG + chr1_3:72082736-72082755 Msa0138860:three_prime_UTR 10.0%
!! AATCAATAAATTAATACAAA+TGG + chr1_3:72082736-72082755 Msa0138860:three_prime_UTR 10.0%
!! AAGAAAAAACTTTATTACAT+TGG - chr1_3:72082654-72082673 None:intergenic 15.0%
!!! AATAAAGTTTTTTCTTTGTA+AGG + chr1_3:72082658-72082677 Msa0138860:three_prime_UTR 15.0%
!! AAAACAACATAAATCTTATT+TGG - chr1_3:72082771-72082790 None:intergenic 15.0%
!! ACAACAACATAAATATTATT+TGG - chr1_3:72082801-72082820 None:intergenic 15.0%
!! AAGAAAAAACTTTATTACAT+TGG - chr1_3:72082654-72082673 None:intergenic 15.0%
!!! AATAAAGTTTTTTCTTTGTA+AGG + chr1_3:72082658-72082677 Msa0138860:three_prime_UTR 15.0%
!! AAAACAACATAAATCTTATT+TGG - chr1_3:72082771-72082790 None:intergenic 15.0%
!! ACAACAACATAAATATTATT+TGG - chr1_3:72082801-72082820 None:intergenic 15.0%
!! TGTTGTTAAGTTTATTTACT+TGG + chr1_3:72082853-72082872 Msa0138860:three_prime_UTR 20.0%
!! TGTTGTTAAGTTTATTTACT+TGG + chr1_3:72082853-72082872 Msa0138860:three_prime_UTR 20.0%
! CAAATTATCAAACCAAACAT+GGG + chr1_3:72081927-72081946 Msa0138860:exon 25.0%
! TATAACTATAGTATAGTTGG+AGG + chr1_3:72082329-72082348 Msa0138860:CDS 25.0%
!!! TCCTTTGGTTTGATATTTAA+CGG - chr1_3:72082441-72082460 None:intergenic 25.0%
!!! TAGATGGATTAGTTGTAATT+AGG - chr1_3:72082554-72082573 None:intergenic 25.0%
! CAAATTATCAAACCAAACAT+GGG + chr1_3:72081927-72081946 Msa0138860:exon 25.0%
! TATAACTATAGTATAGTTGG+AGG + chr1_3:72082329-72082348 Msa0138860:CDS 25.0%
!!! TCCTTTGGTTTGATATTTAA+CGG - chr1_3:72082441-72082460 None:intergenic 25.0%
!!! TAGATGGATTAGTTGTAATT+AGG - chr1_3:72082554-72082573 None:intergenic 25.0%
TGAGAACAAGATATGTATGT+TGG - chr1_3:72081860-72081879 None:intergenic 30.0%
!! TTGGTGATGAAGTTGTAAAA+GGG - chr1_3:72081910-72081929 None:intergenic 30.0%
!! TTTGGTGATGAAGTTGTAAA+AGG - chr1_3:72081911-72081930 None:intergenic 30.0%
!! CCATGTTTGGTTTGATAATT+TGG - chr1_3:72081929-72081948 None:intergenic 30.0%
CCAAATTATCAAACCAAACA+TGG + chr1_3:72081926-72081945 Msa0138860:exon 30.0%
!! TGTCGCACATGTTTTTAATA+TGG + chr1_3:72082186-72082205 Msa0138860:intron 30.0%
GGGTATAACTATAGTATAGT+TGG + chr1_3:72082326-72082345 Msa0138860:CDS 30.0%
! GATATCATTTGAAGCGAAAT+TGG + chr1_3:72082379-72082398 Msa0138860:CDS 30.0%
ACCGTTAAATATCAAACCAA+AGG + chr1_3:72082437-72082456 Msa0138860:CDS 30.0%
!! GGATTAGTTGTAATTAGGAT+TGG - chr1_3:72082549-72082568 None:intergenic 30.0%
ACAGATGATAGTAGATTAGT+AGG - chr1_3:72082586-72082605 None:intergenic 30.0%
!!! TTTTTTCTTGCTTTTGAACC+AGG + chr1_3:72082681-72082700 Msa0138860:three_prime_UTR 30.0%
TGAGAACAAGATATGTATGT+TGG - chr1_3:72081860-72081879 None:intergenic 30.0%
!! TTGGTGATGAAGTTGTAAAA+GGG - chr1_3:72081910-72081929 None:intergenic 30.0%
!! TTTGGTGATGAAGTTGTAAA+AGG - chr1_3:72081911-72081930 None:intergenic 30.0%
!! CCATGTTTGGTTTGATAATT+TGG - chr1_3:72081929-72081948 None:intergenic 30.0%
CCAAATTATCAAACCAAACA+TGG + chr1_3:72081926-72081945 Msa0138860:exon 30.0%
!! TGTCGCACATGTTTTTAATA+TGG + chr1_3:72082186-72082205 Msa0138860:intron 30.0%
GGGTATAACTATAGTATAGT+TGG + chr1_3:72082326-72082345 Msa0138860:CDS 30.0%
! GATATCATTTGAAGCGAAAT+TGG + chr1_3:72082379-72082398 Msa0138860:CDS 30.0%
ACCGTTAAATATCAAACCAA+AGG + chr1_3:72082437-72082456 Msa0138860:CDS 30.0%
!! GGATTAGTTGTAATTAGGAT+TGG - chr1_3:72082549-72082568 None:intergenic 30.0%
ACAGATGATAGTAGATTAGT+AGG - chr1_3:72082586-72082605 None:intergenic 30.0%
!!! TTTTTTCTTGCTTTTGAACC+AGG + chr1_3:72082681-72082700 Msa0138860:three_prime_UTR 30.0%
AAGATATGTATGTTGGTGTG+TGG - chr1_3:72081853-72081872 None:intergenic 35.0%
AATGTGAATACACCCATGTT+TGG - chr1_3:72081942-72081961 None:intergenic 35.0%
ACCAACATAAATATGTACGC+AGG + chr1_3:72082248-72082267 Msa0138860:intron 35.0%
TCCTGCGTACATATTTATGT+TGG - chr1_3:72082252-72082271 None:intergenic 35.0%
AACATAAATATGTACGCAGG+AGG + chr1_3:72082251-72082270 Msa0138860:intron 35.0%
ACATAAATATGTACGCAGGA+GGG + chr1_3:72082252-72082271 Msa0138860:intron 35.0%
CACCAAATTGATGCAATTGA+TGG + chr1_3:72082293-72082312 Msa0138860:CDS 35.0%
CTCCATCAATTGCATCAATT+TGG - chr1_3:72082298-72082317 None:intergenic 35.0%
TATAGTATAGTTGGAGGAGT+AGG + chr1_3:72082335-72082354 Msa0138860:CDS 35.0%
ATAGTATAGTTGGAGGAGTA+GGG + chr1_3:72082336-72082355 Msa0138860:CDS 35.0%
! TTTGAAGCGAAATTGGTTGA+AGG + chr1_3:72082386-72082405 Msa0138860:CDS 35.0%
AAATTGGTTGAAGGTCCAAA+TGG + chr1_3:72082395-72082414 Msa0138860:CDS 35.0%
AGATGCTAAGCCAATTGAAA+AGG + chr1_3:72082460-72082479 Msa0138860:CDS 35.0%
AGTAGATTAGTAGGTAGACT+TGG - chr1_3:72082577-72082596 None:intergenic 35.0%
AAGATATGTATGTTGGTGTG+TGG - chr1_3:72081853-72081872 None:intergenic 35.0%
AATGTGAATACACCCATGTT+TGG - chr1_3:72081942-72081961 None:intergenic 35.0%
ACCAACATAAATATGTACGC+AGG + chr1_3:72082248-72082267 Msa0138860:intron 35.0%
TCCTGCGTACATATTTATGT+TGG - chr1_3:72082252-72082271 None:intergenic 35.0%
AACATAAATATGTACGCAGG+AGG + chr1_3:72082251-72082270 Msa0138860:intron 35.0%
ACATAAATATGTACGCAGGA+GGG + chr1_3:72082252-72082271 Msa0138860:intron 35.0%
CACCAAATTGATGCAATTGA+TGG + chr1_3:72082293-72082312 Msa0138860:CDS 35.0%
CTCCATCAATTGCATCAATT+TGG - chr1_3:72082298-72082317 None:intergenic 35.0%
TATAGTATAGTTGGAGGAGT+AGG + chr1_3:72082335-72082354 Msa0138860:CDS 35.0%
ATAGTATAGTTGGAGGAGTA+GGG + chr1_3:72082336-72082355 Msa0138860:CDS 35.0%
! TTTGAAGCGAAATTGGTTGA+AGG + chr1_3:72082386-72082405 Msa0138860:CDS 35.0%
AAATTGGTTGAAGGTCCAAA+TGG + chr1_3:72082395-72082414 Msa0138860:CDS 35.0%
AGATGCTAAGCCAATTGAAA+AGG + chr1_3:72082460-72082479 Msa0138860:CDS 35.0%
AGTAGATTAGTAGGTAGACT+TGG - chr1_3:72082577-72082596 None:intergenic 35.0%
! AGAGCTTTGTAAAGCTTAGC+AGG - chr1_3:72081993-72082012 None:intergenic 40.0%
GGATGATATCATCAGAGTCA+TGG - chr1_3:72082019-72082038 None:intergenic 40.0%
! TGATGGCATCAACAGCTTTT+GGG - chr1_3:72082040-72082059 None:intergenic 40.0%
!! TTGATGGCATCAACAGCTTT+TGG - chr1_3:72082041-72082060 None:intergenic 40.0%
AACGGTTTCAACACTCTTGA+TGG - chr1_3:72082057-72082076 None:intergenic 40.0%
!! AAGAGTGTTGAAACCGTTGA+GGG + chr1_3:72082059-72082078 Msa0138860:CDS 40.0%
AACGAAAGTGAGCTTCTTGA+CGG - chr1_3:72082102-72082121 None:intergenic 40.0%
AAGAAGCTCACTTTCGTTGA+GGG + chr1_3:72082104-72082123 Msa0138860:CDS 40.0%
!! AATTTGGTGCAACACGTACA+AGG - chr1_3:72082282-72082301 None:intergenic 40.0%
TGCAATTGATGGAGCAAACT+TGG + chr1_3:72082304-72082323 Msa0138860:CDS 40.0%
GCAATTGATGGAGCAAACTT+GGG + chr1_3:72082305-72082324 Msa0138860:CDS 40.0%
CAATTGATGGAGCAAACTTG+GGG + chr1_3:72082306-72082325 Msa0138860:CDS 40.0%
! GATATCTTTTCAACCGTGTC+TGG - chr1_3:72082365-72082384 None:intergenic 40.0%
! AATTGGCTTAGCATCTCCTT+TGG - chr1_3:72082456-72082475 None:intergenic 40.0%
TGCTAAGCCAATTGAAAAGG+AGG + chr1_3:72082463-72082482 Msa0138860:CDS 40.0%
! TCCTCAACCTCCTTTTCAAT+TGG - chr1_3:72082473-72082492 None:intergenic 40.0%
ATTGAAAAGGAGGTTGAGGA+AGG + chr1_3:72082473-72082492 Msa0138860:CDS 40.0%
! AAAGGGTGATGCTCTTTTCA+AGG + chr1_3:72082502-72082521 Msa0138860:CDS 40.0%
! TAGTAGGTAGACTTGGTAGA+TGG - chr1_3:72082570-72082589 None:intergenic 40.0%
! TGCTTTTGAACCAGGAGATT+TGG + chr1_3:72082689-72082708 Msa0138860:three_prime_UTR 40.0%
CAACAAAACACCAAATCTCC+TGG - chr1_3:72082702-72082721 None:intergenic 40.0%
! AGAGCTTTGTAAAGCTTAGC+AGG - chr1_3:72081993-72082012 None:intergenic 40.0%
GGATGATATCATCAGAGTCA+TGG - chr1_3:72082019-72082038 None:intergenic 40.0%
! TGATGGCATCAACAGCTTTT+GGG - chr1_3:72082040-72082059 None:intergenic 40.0%
!! TTGATGGCATCAACAGCTTT+TGG - chr1_3:72082041-72082060 None:intergenic 40.0%
AACGGTTTCAACACTCTTGA+TGG - chr1_3:72082057-72082076 None:intergenic 40.0%
!! AAGAGTGTTGAAACCGTTGA+GGG + chr1_3:72082059-72082078 Msa0138860:CDS 40.0%
AACGAAAGTGAGCTTCTTGA+CGG - chr1_3:72082102-72082121 None:intergenic 40.0%
AAGAAGCTCACTTTCGTTGA+GGG + chr1_3:72082104-72082123 Msa0138860:CDS 40.0%
!! AATTTGGTGCAACACGTACA+AGG - chr1_3:72082282-72082301 None:intergenic 40.0%
TGCAATTGATGGAGCAAACT+TGG + chr1_3:72082304-72082323 Msa0138860:CDS 40.0%
GCAATTGATGGAGCAAACTT+GGG + chr1_3:72082305-72082324 Msa0138860:CDS 40.0%
CAATTGATGGAGCAAACTTG+GGG + chr1_3:72082306-72082325 Msa0138860:CDS 40.0%
! GATATCTTTTCAACCGTGTC+TGG - chr1_3:72082365-72082384 None:intergenic 40.0%
! AATTGGCTTAGCATCTCCTT+TGG - chr1_3:72082456-72082475 None:intergenic 40.0%
TGCTAAGCCAATTGAAAAGG+AGG + chr1_3:72082463-72082482 Msa0138860:CDS 40.0%
! TCCTCAACCTCCTTTTCAAT+TGG - chr1_3:72082473-72082492 None:intergenic 40.0%
ATTGAAAAGGAGGTTGAGGA+AGG + chr1_3:72082473-72082492 Msa0138860:CDS 40.0%
! AAAGGGTGATGCTCTTTTCA+AGG + chr1_3:72082502-72082521 Msa0138860:CDS 40.0%
! TAGTAGGTAGACTTGGTAGA+TGG - chr1_3:72082570-72082589 None:intergenic 40.0%
! TGCTTTTGAACCAGGAGATT+TGG + chr1_3:72082689-72082708 Msa0138860:three_prime_UTR 40.0%
CAACAAAACACCAAATCTCC+TGG - chr1_3:72082702-72082721 None:intergenic 40.0%
TATGTATGTTGGTGTGTGGC+TGG - chr1_3:72081849-72081868 None:intergenic 45.0%
!! CAAGAGTGTTGAAACCGTTG+AGG + chr1_3:72082058-72082077 Msa0138860:CDS 45.0%
GTTGAAACCGTTGAGGGAAA+TGG + chr1_3:72082065-72082084 Msa0138860:CDS 45.0%
CAAGAAGCTCACTTTCGTTG+AGG + chr1_3:72082103-72082122 Msa0138860:CDS 45.0%
TTGGTTGAAGGTCCAAATGG+AGG + chr1_3:72082398-72082417 Msa0138860:CDS 45.0%
TGGTTGAAGGTCCAAATGGA+GGG + chr1_3:72082399-72082418 Msa0138860:CDS 45.0%
GTCCAAATGGAGGGTCTATT+GGG + chr1_3:72082408-72082427 Msa0138860:CDS 45.0%
TTCCCAATAGACCCTCCATT+TGG - chr1_3:72082413-72082432 None:intergenic 45.0%
GCCAATTGAAAAGGAGGTTG+AGG + chr1_3:72082469-72082488 Msa0138860:CDS 45.0%
!! TGCTCTTTTCAAGGCCATTG+AGG + chr1_3:72082511-72082530 Msa0138860:CDS 45.0%
!! GCTCTTTTCAAGGCCATTGA+GGG + chr1_3:72082512-72082531 Msa0138860:CDS 45.0%
! GGCCATTGAGGGTTATGTTT+TGG + chr1_3:72082523-72082542 Msa0138860:CDS 45.0%
GGCCAAAACATAACCCTCAA+TGG - chr1_3:72082528-72082547 None:intergenic 45.0%
TATGTATGTTGGTGTGTGGC+TGG - chr1_3:72081849-72081868 None:intergenic 45.0%
!! CAAGAGTGTTGAAACCGTTG+AGG + chr1_3:72082058-72082077 Msa0138860:CDS 45.0%
GTTGAAACCGTTGAGGGAAA+TGG + chr1_3:72082065-72082084 Msa0138860:CDS 45.0%
CAAGAAGCTCACTTTCGTTG+AGG + chr1_3:72082103-72082122 Msa0138860:CDS 45.0%
TTGGTTGAAGGTCCAAATGG+AGG + chr1_3:72082398-72082417 Msa0138860:CDS 45.0%
TGGTTGAAGGTCCAAATGGA+GGG + chr1_3:72082399-72082418 Msa0138860:CDS 45.0%
GTCCAAATGGAGGGTCTATT+GGG + chr1_3:72082408-72082427 Msa0138860:CDS 45.0%
TTCCCAATAGACCCTCCATT+TGG - chr1_3:72082413-72082432 None:intergenic 45.0%
GCCAATTGAAAAGGAGGTTG+AGG + chr1_3:72082469-72082488 Msa0138860:CDS 45.0%
!! TGCTCTTTTCAAGGCCATTG+AGG + chr1_3:72082511-72082530 Msa0138860:CDS 45.0%
!! GCTCTTTTCAAGGCCATTGA+GGG + chr1_3:72082512-72082531 Msa0138860:CDS 45.0%
! GGCCATTGAGGGTTATGTTT+TGG + chr1_3:72082523-72082542 Msa0138860:CDS 45.0%
GGCCAAAACATAACCCTCAA+TGG - chr1_3:72082528-72082547 None:intergenic 45.0%
CTTAGCAGGAGCAACTGTAG+AGG - chr1_3:72081979-72081998 None:intergenic 50.0%
GAAACCGTTGAGGGAAATGG+TGG + chr1_3:72082068-72082087 Msa0138860:CDS 50.0%
AGGACCACCATTTCCCTCAA+CGG - chr1_3:72082075-72082094 None:intergenic 50.0%
GGTCCAAATGGAGGGTCTAT+TGG + chr1_3:72082407-72082426 Msa0138860:CDS 50.0%
AAAGGAGGTTGAGGAAGGCA+AGG + chr1_3:72082478-72082497 Msa0138860:CDS 50.0%
GTTGAGGAAGGCAAGGCAAA+GGG + chr1_3:72082485-72082504 Msa0138860:CDS 50.0%
CTTAGCAGGAGCAACTGTAG+AGG - chr1_3:72081979-72081998 None:intergenic 50.0%
GAAACCGTTGAGGGAAATGG+TGG + chr1_3:72082068-72082087 Msa0138860:CDS 50.0%
AGGACCACCATTTCCCTCAA+CGG - chr1_3:72082075-72082094 None:intergenic 50.0%
GGTCCAAATGGAGGGTCTAT+TGG + chr1_3:72082407-72082426 Msa0138860:CDS 50.0%
AAAGGAGGTTGAGGAAGGCA+AGG + chr1_3:72082478-72082497 Msa0138860:CDS 50.0%
GTTGAGGAAGGCAAGGCAAA+GGG + chr1_3:72082485-72082504 Msa0138860:CDS 50.0%
AGCAGGAGCAACTGTAGAGG+TGG - chr1_3:72081976-72081995 None:intergenic 55.0%
GTTGAGGGAAATGGTGGTCC+TGG + chr1_3:72082074-72082093 Msa0138860:CDS 55.0%
AGGAGTAGGGTTGCCAGACA+CGG + chr1_3:72082349-72082368 Msa0138860:CDS 55.0%
GGTTGAGGAAGGCAAGGCAA+AGG + chr1_3:72082484-72082503 Msa0138860:CDS 55.0%
! ATGTTGGTGTGTGGCTGGCT+TGG - chr1_3:72081844-72081863 None:intergenic 55.0%
AGCAGGAGCAACTGTAGAGG+TGG - chr1_3:72081976-72081995 None:intergenic 55.0%
GTTGAGGGAAATGGTGGTCC+TGG + chr1_3:72082074-72082093 Msa0138860:CDS 55.0%
AGGAGTAGGGTTGCCAGACA+CGG + chr1_3:72082349-72082368 Msa0138860:CDS 55.0%
GGTTGAGGAAGGCAAGGCAA+AGG + chr1_3:72082484-72082503 Msa0138860:CDS 55.0%
GTGAGCTTCTTGACGGTGCC+AGG - chr1_3:72082095-72082114 None:intergenic 60.0%
GTGAGCTTCTTGACGGTGCC+AGG - chr1_3:72082095-72082114 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72081843 72082908 72081843 ID=Msa0138860;Name=Msa0138860
chr1_3 mRNA 72081843 72082908 72081843 ID=Msa0138860-mRNA-1;Parent=Msa0138860;Name=Msa0138860-mRNA-1;_AED=0.39;_eAED=0.39;_QI=102|1|1|1|1|1|2|343|158
chr1_3 exon 72081843 72082125 72081843 ID=Msa0138860-mRNA-1:exon:25115;Parent=Msa0138860-mRNA-1
chr1_3 exon 72082270 72082908 72082270 ID=Msa0138860-mRNA-1:exon:25116;Parent=Msa0138860-mRNA-1
chr1_3 five_prime_UTR 72081843 72081944 72081843 ID=Msa0138860-mRNA-1:five_prime_utr;Parent=Msa0138860-mRNA-1
chr1_3 CDS 72081945 72082125 72081945 ID=Msa0138860-mRNA-1:cds;Parent=Msa0138860-mRNA-1
chr1_3 CDS 72082270 72082565 72082270 ID=Msa0138860-mRNA-1:cds;Parent=Msa0138860-mRNA-1
chr1_3 three_prime_UTR 72082566 72082908 72082566 ID=Msa0138860-mRNA-1:three_prime_utr;Parent=Msa0138860-mRNA-1
Gene Sequence

>Msa0138860

ATGGGTGTATTCACATTTGAGCAAGAAACCACCTCTACAGTTGCTCCTGCTAAGCTTTACAAAGCTCTTGTCCATGACTCTGATGATATCATCCCAAAAGCTGTTGATGCCATCAAGAGTGTTGAAACCGTTGAGGGAAATGGTGGTCCTGGCACCGTCAAGAAGCTCACTTTCGTTGAGGGAGGGCAAACCTTGTACGTGTTGCACCAAATTGATGCAATTGATGGAGCAAACTTGGGGTATAACTATAGTATAGTTGGAGGAGTAGGGTTGCCAGACACGGTTGAAAAGATATCATTTGAAGCGAAATTGGTTGAAGGTCCAAATGGAGGGTCTATTGGGAAGACGACCGTTAAATATCAAACCAAAGGAGATGCTAAGCCAATTGAAAAGGAGGTTGAGGAAGGCAAGGCAAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTAATTACAACTAA
Protein sequence

>Msa0138860

MGVFTFEQETTSTVAPAKLYKALVHDSDDIIPKAVDAIKSVETVEGNGGPGTVKKLTFVEGGQTLYVLHQIDAIDGANLGYNYSIVGGVGLPDTVEKISFEAKLVEGPNGGSIGKTTVKYQTKGDAKPIEKEVEEGKAKGDALFKAIEGYVLANPNYN*