AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932140 MtrunA17_Chr6g0449061 96.138 492 12 1 2 493 3 487 0.0 960
Msa0932140 MtrunA17_Chr7g0251321 71.501 393 93 1 96 488 1 374 0.0 588
Msa0932140 MtrunA17_Chr7g0251331 53.602 472 215 2 15 483 2 472 0.0 521
Msa0932140 MtrunA17_Chr1g0208821 49.485 485 243 2 7 491 13 495 4.93e-171 491
Msa0932140 MtrunA17_Chr1g0208881 50.740 473 232 1 16 488 5 476 1.71e-169 486
Msa0932140 MtrunA17_Chr1g0208891 51.073 466 226 2 16 481 5 468 8.15e-165 474
Msa0932140 MtrunA17_Chr6g0483361 49.244 463 232 2 21 481 10 471 1.94e-155 451
Msa0932140 MtrunA17_Chr6g0483381 48.750 480 241 4 11 488 3 479 2.43e-154 448
Msa0932140 MtrunA17_Chr6g0477961 48.894 452 227 3 39 488 30 479 1.87e-144 423
Msa0932140 MtrunA17_Chr1g0208791 44.650 486 251 4 13 483 17 499 6.88e-135 399
Msa0932140 MtrunA17_Chr6g0483341 45.045 444 244 0 36 479 41 484 3.52e-130 387
Msa0932140 MtrunA17_Chr8g0392601 43.267 453 256 1 27 479 3 454 1.10e-128 382
Msa0932140 MtrunA17_Chr6g0483351 50.529 378 185 1 96 471 1 378 1.92e-128 380
Msa0932140 MtrunA17_Chr6g0483331 42.793 444 254 0 36 479 12 455 1.08e-119 359
Msa0932140 MtrunA17_Chr2g0322671 36.542 509 302 5 1 491 1 506 3.14e-111 338
Msa0932140 MtrunA17_Chr4g0024501 35.521 518 305 4 1 490 1 517 5.07e-109 333
Msa0932140 MtrunA17_Chr6g0483161 39.474 380 211 1 94 473 1 361 7.65e-101 307
Msa0932140 MtrunA17_Chr2g0317131 37.500 480 290 4 13 484 12 489 1.33e-100 311
Msa0932140 MtrunA17_Chr2g0317151 37.500 464 287 2 7 470 6 466 2.36e-96 299
Msa0932140 MtrunA17_Chr2g0288281 39.583 384 232 0 96 479 1 384 3.77e-95 293
Msa0932140 MtrunA17_Chr8g0368001 34.350 492 316 4 3 489 16 505 4.03e-89 281
Msa0932140 MtrunA17_Chr2g0317161 36.842 437 273 3 35 470 30 464 1.16e-87 277
Msa0932140 MtrunA17_Chr5g0412771 35.874 446 284 2 34 479 54 497 3.19e-85 271
Msa0932140 MtrunA17_Chr2g0317171 34.858 459 291 3 19 470 13 470 1.88e-84 269
Msa0932140 MtrunA17_Chr5g0412541 33.333 495 314 7 4 490 3 489 1.18e-83 267
Msa0932140 MtrunA17_Chr1g0203791 33.068 502 315 8 2 491 27 519 6.30e-81 261
Msa0932140 MtrunA17_Chr2g0317221 37.302 378 237 0 93 470 7 384 1.61e-80 256
Msa0932140 MtrunA17_Chr7g0254521 33.198 494 313 5 4 487 2 488 1.40e-78 253
Msa0932140 MtrunA17_Chr5g0397991 32.298 483 311 7 2 477 32 505 1.71e-78 254
Msa0932140 MtrunA17_Chr6g0473701 32.218 478 317 4 3 477 95 568 1.60e-77 254
Msa0932140 MtrunA17_Chr5g0428251 30.886 463 313 4 19 477 36 495 5.18e-76 249
Msa0932140 MtrunA17_Chr3g0132531 34.221 488 314 5 7 492 20 502 5.54e-76 247
Msa0932140 MtrunA17_Chr6g0467321 31.772 491 311 6 18 488 21 507 1.14e-75 247
Msa0932140 MtrunA17_Chr1g0154441 35.492 386 244 2 96 479 1 383 8.91e-74 238
Msa0932140 MtrunA17_Chr7g0254511 31.902 489 319 6 8 489 3 484 9.67e-74 241
Msa0932140 MtrunA17_Chr7g0254531 36.719 384 242 1 96 479 1 383 1.73e-73 238
Msa0932140 MtrunA17_Chr5g0442331 31.753 485 311 3 14 479 5 488 8.38e-73 239
Msa0932140 MtrunA17_Chr3g0140931 30.085 472 319 5 11 477 26 491 1.04e-72 240
Msa0932140 MtrunA17_Chr8g0389801 31.320 447 300 4 32 476 19 460 8.78e-68 224
Msa0932140 MtrunA17_Chr5g0412571 35.825 388 239 4 94 476 38 420 7.88e-66 218
Msa0932140 MtrunA17_Chr4g0013031 30.580 448 300 5 36 477 66 508 1.24e-64 218
Msa0932140 MtrunA17_Chr1g0202761 30.603 464 319 2 16 479 23 483 4.31e-64 216
Msa0932140 MtrunA17_Chr6g0468531 30.591 474 317 6 13 479 3 471 5.78e-62 210
Msa0932140 MtrunA17_Chr2g0295631 29.895 475 316 3 28 486 12 485 1.07e-61 209
Msa0932140 MtrunA17_Chr6g0468521 28.512 477 322 7 13 479 3 470 3.69e-60 205
Msa0932140 MtrunA17_Chr6g0460541 33.419 389 251 3 94 479 3 386 3.12e-59 200
Msa0932140 MtrunA17_Chr7g0254501 34.713 314 197 3 181 489 2 312 3.17e-53 182
Msa0932140 MtrunA17_Chr6g0483264 43.128 211 120 0 277 487 2 212 3.42e-53 179
Msa0932140 MtrunA17_Chr7g0248051 31.034 464 317 2 20 483 54 514 1.56e-51 182
Msa0932140 MtrunA17_Chr6g0468511 30.105 475 317 7 13 479 3 470 2.70e-50 178
Msa0932140 MtrunA17_Chr6g0483241 43.889 180 101 0 94 273 1 180 1.25e-46 160
Msa0932140 MtrunA17_Chr3g0132541 27.983 461 271 6 31 487 32 435 1.73e-46 167
Msa0932140 MtrunA17_Chr5g0440661 29.032 372 191 9 96 462 1 304 1.52e-36 137
Msa0932140 MtrunA17_Chr6g0487091 28.000 325 201 7 171 476 79 389 2.28e-34 133
Msa0932140 MtrunA17_Chr6g0483261 42.424 165 95 0 323 487 6 170 8.82e-34 125
Msa0932140 MtrunA17_Chr8g0364761 30.000 270 187 2 37 305 54 322 1.64e-33 129
Msa0932140 MtrunA17_Chr6g0483221 41.611 149 87 0 323 471 6 154 4.76e-33 123
Msa0932140 MtrunA17_Chr8g0364751 41.667 168 98 0 320 487 16 183 5.60e-32 121
Msa0932140 MtrunA17_Chr5g0398571 31.754 211 144 0 275 485 85 295 1.04e-28 115
Msa0932140 MtrunA17_Chr6g0460521 35.749 207 133 0 273 479 1 207 1.70e-28 112
Msa0932140 MtrunA17_Chr6g0460531 27.106 273 177 7 7 273 3 259 1.76e-17 82.4
Msa0932140 MtrunA17_Chr5g0442311 25.824 182 127 2 96 273 1 178 1.55e-15 74.7
Msa0932140 MtrunA17_Chr6g0483281 49.296 71 36 0 207 277 5 75 1.58e-14 68.9
Msa0932140 MtrunA17_Chr6g0483291 45.946 74 36 1 26 99 4 73 7.93e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932140 AT1G66760.2 49.072 485 243 2 7 491 1 481 4.39e-177 506
Msa0932140 AT1G64820.1 50.728 481 234 2 10 488 2 481 1.05e-173 498
Msa0932140 AT1G66760.1 49.247 465 232 2 7 471 1 461 1.03e-169 487
Msa0932140 AT1G71140.1 51.068 468 224 2 15 482 8 470 1.54e-168 484
Msa0932140 AT1G66780.1 50.104 481 237 2 1 481 1 478 1.07e-165 477
Msa0932140 AT2G04100.1 49.782 458 229 1 33 490 26 482 1.38e-158 459
Msa0932140 AT2G04090.1 49.669 453 227 1 33 485 26 477 3.07e-158 458
Msa0932140 AT1G15170.1 47.182 479 249 2 1 479 1 475 4.01e-155 450
Msa0932140 AT1G15150.1 47.439 449 235 1 31 479 25 472 1.36e-154 449
Msa0932140 AT2G04040.1 48.000 450 233 1 32 481 22 470 1.81e-154 448
Msa0932140 AT2G04080.1 45.397 478 256 2 14 491 4 476 2.51e-154 448
Msa0932140 AT2G04050.1 48.330 449 231 1 37 485 27 474 5.23e-153 445
Msa0932140 AT5G52450.1 47.934 484 238 3 1 483 1 471 7.96e-153 444
Msa0932140 AT2G04070.1 48.090 445 230 1 37 481 27 470 1.47e-152 444
Msa0932140 AT2G04100.2 50.114 439 218 1 33 471 26 463 2.10e-152 443
Msa0932140 AT1G15160.1 44.885 479 257 2 1 479 1 472 3.50e-152 443
Msa0932140 AT2G04080.2 44.978 458 251 1 14 471 4 460 2.66e-148 432
Msa0932140 AT1G73700.1 48.548 482 240 3 7 488 1 474 3.68e-144 422
Msa0932140 AT2G34360.1 47.609 460 231 5 26 483 15 466 2.17e-143 420
Msa0932140 AT1G15180.1 45.625 480 256 3 1 479 1 476 4.06e-140 412
Msa0932140 AT1G66760.4 48.363 397 201 2 7 403 1 393 1.51e-138 405
Msa0932140 AT1G15150.2 47.875 353 184 0 127 479 4 356 3.49e-124 367
Msa0932140 AT1G66760.3 49.850 333 167 0 139 471 1 333 3.15e-123 363
Msa0932140 AT1G15170.2 48.442 353 182 0 127 479 4 356 5.95e-123 364
Msa0932140 AT2G34360.2 42.702 459 213 3 26 483 15 424 4.03e-122 364
Msa0932140 AT3G21690.1 36.515 482 294 2 9 490 35 504 4.76e-101 313
Msa0932140 AT3G23550.1 37.662 462 275 4 18 470 6 463 4.66e-98 304
Msa0932140 AT1G61890.1 36.226 461 280 5 37 491 47 499 6.62e-97 302
Msa0932140 AT3G23560.1 36.674 469 283 5 12 470 7 471 4.01e-94 294
Msa0932140 AT1G61890.2 36.508 441 267 4 37 471 47 480 8.46e-94 293
Msa0932140 AT1G11670.1 33.858 508 305 8 7 490 1 501 6.97e-93 291
Msa0932140 AT5G38030.1 34.538 498 312 3 6 491 2 497 1.90e-90 285
Msa0932140 AT3G26590.1 34.504 484 303 4 8 479 4 485 6.80e-90 283
Msa0932140 AT1G12950.1 36.607 448 282 2 34 481 64 509 1.73e-88 281
Msa0932140 AT4G21910.2 36.830 448 271 5 37 479 57 497 2.49e-88 280
Msa0932140 AT4G21910.4 36.830 448 271 5 37 479 57 497 2.49e-88 280
Msa0932140 AT4G21910.3 36.018 447 276 4 37 479 55 495 6.86e-88 278
Msa0932140 AT4G21910.1 36.018 447 276 4 37 479 55 495 6.86e-88 278
Msa0932140 AT4G21903.1 38.517 418 245 5 67 479 83 493 1.16e-87 278
Msa0932140 AT4G21903.3 38.660 388 230 2 96 479 1 384 5.16e-86 270
Msa0932140 AT1G15180.2 46.429 280 150 0 124 403 1 280 9.55e-86 270
Msa0932140 AT4G21903.2 37.413 433 255 6 67 490 83 508 2.02e-84 270
Msa0932140 AT3G59030.1 34.305 446 290 3 35 479 49 492 1.26e-82 265
Msa0932140 AT1G61890.3 35.437 412 253 4 37 442 47 451 2.56e-81 261
Msa0932140 AT5G65380.1 35.073 479 299 6 6 479 7 478 2.97e-81 261
Msa0932140 AT1G47530.1 34.801 477 305 5 7 479 1 475 2.37e-80 258
Msa0932140 AT1G23300.1 35.332 467 292 6 24 485 32 493 2.69e-80 259
Msa0932140 AT3G26590.2 37.500 384 239 1 96 479 1 383 5.45e-79 252
Msa0932140 AT4G29140.1 32.988 482 314 4 8 487 31 505 1.70e-77 252
Msa0932140 AT1G33110.1 33.615 473 308 4 10 479 7 476 2.39e-77 251
Msa0932140 AT5G52050.1 32.787 488 307 8 1 476 1 479 1.04e-76 249
Msa0932140 AT5G44050.1 32.495 477 318 4 9 484 13 486 2.12e-76 248
Msa0932140 AT5G10420.1 33.966 474 304 5 9 479 12 479 4.23e-76 247
Msa0932140 AT1G33100.1 33.830 470 308 3 10 479 7 473 2.21e-75 246
Msa0932140 AT3G23560.2 36.070 402 243 5 12 403 7 404 6.15e-75 242
Msa0932140 AT4G23030.1 32.712 483 314 4 15 489 8 487 2.04e-74 243
Msa0932140 AT1G33090.1 34.382 477 299 6 10 479 7 476 7.93e-74 241
Msa0932140 AT1G33080.1 32.854 487 319 4 10 490 7 491 3.50e-71 234
Msa0932140 AT1G33080.2 33.262 469 309 3 10 476 7 473 1.17e-70 233
Msa0932140 AT1G71870.1 32.008 478 301 7 18 475 6 479 1.42e-70 233
Msa0932140 AT1G47530.2 35.677 384 246 1 96 479 1 383 8.66e-70 228
Msa0932140 AT2G38510.1 28.894 443 313 2 36 477 5 446 2.37e-69 229
Msa0932140 AT5G19700.1 31.749 463 301 6 36 489 35 491 7.33e-69 229
Msa0932140 AT4G00350.1 34.375 448 281 7 37 479 88 527 1.05e-68 229
Msa0932140 AT1G58340.1 29.718 461 319 3 35 493 56 513 2.13e-66 223
Msa0932140 AT4G22790.1 31.799 478 309 5 3 476 6 470 2.53e-63 214
Msa0932140 AT5G49130.1 29.979 467 312 4 35 487 24 489 6.59e-62 210
Msa0932140 AT4G25640.1 32.000 475 315 3 10 479 2 473 2.32e-60 206
Msa0932140 AT4G25640.2 32.000 475 315 3 10 479 2 473 5.77e-60 206
Msa0932140 AT5G17700.2 30.169 474 321 4 10 479 7 474 1.63e-59 204
Msa0932140 AT5G17700.1 30.169 474 321 4 10 479 7 474 1.63e-59 204
Msa0932140 AT3G59030.2 32.703 370 246 3 35 403 49 416 3.51e-58 198
Msa0932140 AT3G03620.2 29.536 474 327 5 19 488 16 486 4.13e-57 197
Msa0932140 AT3G03620.1 29.536 474 327 5 19 488 16 486 4.13e-57 197
Msa0932140 AT1G33110.2 32.331 399 262 5 10 404 7 401 3.90e-53 184
Msa0932140 AT4G25640.3 31.935 429 284 3 12 435 4 429 1.40e-52 184
Msa0932140 AT2G04066.1 48.889 135 65 1 357 491 41 171 2.92e-37 135
Msa0932140 AT5G17700.3 27.387 398 279 4 10 403 7 398 2.34e-36 139

Find 106 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCTATTTGTTGGATTC+TGG 0.144927 6_3:-139105 Msa0932140:CDS
ACTAACATCTAGACATATTT+TGG 0.171532 6_3:-137270 Msa0932140:three_prime_UTR
ATTCCTATTGGTTTGTTATT+AGG 0.201827 6_3:-137706 Msa0932140:CDS
TAGCTATTGGAATTTCTTAT+TGG 0.229128 6_3:-139046 Msa0932140:CDS
TTCCTTCTGGACTCATGTTT+TGG 0.233890 6_3:-138908 Msa0932140:intron
TGCAAATATGCTATTCCTTC+TGG 0.235933 6_3:-138921 Msa0932140:CDS
GTTAGAGTGGTTGTGATTAT+TGG 0.240480 6_3:-138399 Msa0932140:CDS
ACTCGTGTTTCAAATGAATT+AGG 0.240783 6_3:-138453 Msa0932140:CDS
TACCTCATTCCCGCTCTATT+TGG 0.243762 6_3:-139221 Msa0932140:CDS
GTTAGTGCTGATAGTCTAAT+TGG 0.244051 6_3:-138249 Msa0932140:CDS
TGTGAATTACATTGCGGATA+TGG 0.251319 6_3:-138292 Msa0932140:CDS
AGTCTAATTGGAGCTCTTTC+AGG 0.262673 6_3:-138237 Msa0932140:intron
ACAGCTCCCTTAGCTGTCTT+TGG 0.262861 6_3:+138420 None:intergenic
AATATCCACACAAGAGATAT+TGG 0.269827 6_3:+139314 None:intergenic
ATTGGAGCTGCTTTAGCTAT+TGG 0.308771 6_3:-139059 Msa0932140:CDS
CTTATTGGTTGAATGTGATA+TGG 0.309579 6_3:-139031 Msa0932140:CDS
GGTATACTTGTTTCATTCTC+TGG 0.313561 6_3:-140522 Msa0932140:CDS
GAGGTTTCAAGTTGAGGATT+AGG 0.328796 6_3:+138759 None:intergenic
GGTTGAATGTGATATGGCTT+TGG 0.339522 6_3:-139025 Msa0932140:CDS
GTTGAAGAAAGTGAGTTTCA+TGG 0.346264 6_3:-140619 Msa0932140:CDS
CATGTGCTCTCAAAATTTGT+AGG 0.351508 6_3:+137197 None:intergenic
TATATTGTGGGAATTCCTAT+TGG 0.359116 6_3:-137718 Msa0932140:CDS
AAAACCAGAATCCAACAAAT+AGG 0.359230 6_3:+139101 None:intergenic
TCAAGTGGTTTCTCTTATGA+TGG 0.367964 6_3:-140556 Msa0932140:CDS
GTTGAATGTGATATGGCTTT+GGG 0.371323 6_3:-139024 Msa0932140:CDS
ACCTTTGGTGCAGAGGAGTA+TGG 0.372023 6_3:-139392 Msa0932140:CDS
TTGTGGATGGGAACTCTATC+AGG 0.380221 6_3:-137655 Msa0932140:CDS
TTCTTCATTCCATATGCAAT+TGG 0.387110 6_3:-138603 Msa0932140:CDS
AAACCTCGGTTCTTTCTGTC+TGG 0.401635 6_3:-138743 Msa0932140:intron
ATGAGTAGAAAACACAATCT+TGG 0.406242 6_3:+138968 None:intergenic
CGAGCTACATGAGACATTCC+AGG 0.426985 6_3:+139257 None:intergenic
AGGAGGTGGATTTCAAGAAA+TGG 0.431562 6_3:-137767 Msa0932140:CDS
GAAAGATCATTCCCTGAGTC+TGG 0.432954 6_3:+139165 None:intergenic
AAACCTAATAACAAACCAAT+AGG 0.436422 6_3:+137703 None:intergenic
TTGTAACTGCATTAACTGAT+TGG 0.453816 6_3:-137603 Msa0932140:CDS
ACAAAGAAATTAATCATGAT+AGG 0.455982 6_3:-137378 Msa0932140:three_prime_UTR
GCATTGTAGTTGGGAATGGC+TGG 0.457500 6_3:-139440 Msa0932140:intron
GGAGGTGGATTTCAAGAAAT+GGG 0.458931 6_3:-137766 Msa0932140:CDS
ACACTATGTGGACAAACCTT+TGG 0.467875 6_3:-139407 Msa0932140:CDS
CCTTGGAGCTTACTATATTG+TGG 0.467917 6_3:-137731 Msa0932140:CDS
ATATCCACACAAGAGATATT+GGG 0.469336 6_3:+139315 None:intergenic
GCAGAAGCTCCAATTGCATA+TGG 0.475350 6_3:+138594 None:intergenic
TTGCTTATACAGCTGTTGTA+TGG 0.475962 6_3:-137322 Msa0932140:three_prime_UTR
CTTGGAGCTTACTATATTGT+GGG 0.480379 6_3:-137730 Msa0932140:CDS
GTTTGCATTGTAGTTGGGAA+TGG 0.482865 6_3:-139444 Msa0932140:intron
AGTGATGAGCATGGAAGTGA+TGG 0.493110 6_3:-140675 Msa0932140:CDS
TCCATACTCCTCTGCACCAA+AGG 0.494105 6_3:+139391 None:intergenic
GAGTTTCATGGCAGCTCCAA+TGG 0.497826 6_3:-140607 Msa0932140:CDS
GCAGGGGTTGCTAGAGGAGG+TGG 0.498862 6_3:-137781 Msa0932140:intron
GATTCGCTATTTCCAGACTC+AGG 0.500456 6_3:-139177 Msa0932140:CDS
AGTGGTTTCTCTTATGATGG+TGG 0.502914 6_3:-140553 Msa0932140:CDS
GCAGAGGAGTATGGAAAACT+TGG 0.503242 6_3:-139383 Msa0932140:CDS
CATCTAAAATTAAATGCGAA+GGG 0.503899 6_3:-137679 Msa0932140:CDS
ATTAACTGATTGGCAGAAAG+AGG 0.504417 6_3:-137593 Msa0932140:intron
AATTAAATGCGAAGGGATTG+TGG 0.504525 6_3:-137672 Msa0932140:CDS
GTTTCAAATGAATTAGGAGC+AGG 0.508966 6_3:-138447 Msa0932140:CDS
AGAACCGAGGTTTCAAGTTG+AGG 0.511415 6_3:+138753 None:intergenic
GTTGGGAATGGCTGGTGCAT+TGG 0.512611 6_3:-139432 Msa0932140:CDS
GTTTCCCAATATCTCTTGTG+TGG 0.512963 6_3:-139319 Msa0932140:CDS
AAATGCGAAGGGATTGTGGA+TGG 0.515962 6_3:-137668 Msa0932140:CDS
AAACTCTAGAGAGATGAGTA+AGG 0.519910 6_3:-140724 Msa0932140:CDS
TTCACAATATCTTCTTCAAG+TGG 0.522208 6_3:-140571 Msa0932140:CDS
CTAAAATATTTCTAAAGCAA+AGG 0.529386 6_3:+138343 None:intergenic
TCATCTAAAATTAAATGCGA+AGG 0.529668 6_3:-137680 Msa0932140:CDS
CTTATGATGGTGGGACATCT+CGG 0.535495 6_3:-140543 Msa0932140:CDS
TCATCACTCTTTCTTAGCAA+TGG 0.536715 6_3:+140690 None:intergenic
AACTAACAACACATTGGTGG+TGG 0.546469 6_3:-137409 Msa0932140:CDS
GGAAATCCAAAGACAGCTAA+GGG 0.549690 6_3:-138426 Msa0932140:CDS
AGGAAATCCAAAGACAGCTA+AGG 0.552623 6_3:-138427 Msa0932140:CDS
GTGGTTTCTCTTATGATGGT+GGG 0.552777 6_3:-140552 Msa0932140:CDS
CATTGCAGGCAACAAAAGCA+AGG 0.553104 6_3:-137458 Msa0932140:intron
GAAACAGTTACAGCTACCAT+TGG 0.557714 6_3:+140591 None:intergenic
ATAGCATATTTGCAGAACTC+TGG 0.558784 6_3:+138930 None:intergenic
TCAGGGAATGATCTTTCCCA+TGG 0.560267 6_3:-139159 Msa0932140:CDS
AGCCAAATAGAGCGGGAATG+AGG 0.570337 6_3:+139219 None:intergenic
TGGACAAACCTTTGGTGCAG+AGG 0.570653 6_3:-139399 Msa0932140:CDS
TACCAAAACATGAGTCCAGA+AGG 0.573401 6_3:+138906 None:intergenic
ATTCGCTATTTCCAGACTCA+GGG 0.576880 6_3:-139176 Msa0932140:CDS
CATATTTGCAGAACTCTGGT+AGG 0.578691 6_3:+138934 None:intergenic
AGCTAAGGGAGCTGTTAGAG+TGG 0.582031 6_3:-138412 Msa0932140:CDS
TTGAGGATTAGGTAAAAGCC+CGG 0.583309 6_3:+138770 None:intergenic
TTCAGCAAAAGACATGGCAA+TGG 0.584361 6_3:+140494 None:intergenic
AGTGCATAGCCAAATAGAGC+GGG 0.584898 6_3:+139212 None:intergenic
CTAACAGAAACACAAAGAAG+AGG 0.588544 6_3:+138267 None:intergenic
AAGTTGGGATTAGGACACAT+TGG 0.599322 6_3:-139077 Msa0932140:CDS
TAATCCTCAACTTGAAACCT+CGG 0.601964 6_3:-138757 Msa0932140:CDS
ATGCAATTGGAGCTTCTGCA+AGG 0.601986 6_3:-138590 Msa0932140:intron
AGGCAACAAAAGCAAGGGAG+AGG 0.607625 6_3:-137452 Msa0932140:CDS
AATTAAAATAAGAATCTCAA+AGG 0.607660 6_3:+138794 None:intergenic
GAGCTACATGAGACATTCCA+GGG 0.620444 6_3:+139258 None:intergenic
AATGCGAAGGGATTGTGGAT+GGG 0.620482 6_3:-137667 Msa0932140:CDS
CCACAATATAGTAAGCTCCA+AGG 0.626718 6_3:+137731 None:intergenic
TGAACTGCAGGGGTTGCTAG+AGG 0.635927 6_3:-137787 Msa0932140:intron
CTAAGAAAGAGTGATGAGCA+TGG 0.642828 6_3:-140684 Msa0932140:CDS
CTCTAGAGAGATGAGTAAGG+AGG 0.643848 6_3:-140721 Msa0932140:CDS
ACTGCAGGGGTTGCTAGAGG+AGG 0.647610 6_3:-137784 Msa0932140:intron
GAGGTGGATTTCAAGAAATG+GGG 0.650274 6_3:-137765 Msa0932140:CDS
AGTAACTTCAGCAAAAGACA+TGG 0.654565 6_3:+140488 None:intergenic
ATTGCAGGCAACAAAAGCAA+GGG 0.658902 6_3:-137457 Msa0932140:intron
GGTGCATTGGAAACACTATG+TGG 0.664884 6_3:-139419 Msa0932140:CDS
TGTGATTATTGGAATTGCTG+AGG 0.666119 6_3:-138388 Msa0932140:CDS
AGGTGGATTTCAAGAAATGG+GGG 0.668457 6_3:-137764 Msa0932140:CDS
ACAAGTTGTGAATTACATTG+CGG 0.676878 6_3:-138298 Msa0932140:CDS
TGGAATGAAGAAGTGCAATG+AGG 0.693110 6_3:+138614 None:intergenic
AAGTGCATAGCCAAATAGAG+CGG 0.722956 6_3:+139211 None:intergenic
TCACCAGACAGAAAGAACCG+AGG 0.782249 6_3:+138740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGAATATACAAAA+GGG + chr6_3:138228-138247 None:intergenic 10.0%
!! TAGATTAAATTCATTAAATA+AGG + chr6_3:138318-138337 None:intergenic 10.0%
!! AAAATCAAAAGAAGAAAAAT+AGG + chr6_3:137567-137586 None:intergenic 15.0%
!! GAAAAAAATGAATATACAAA+AGG + chr6_3:138229-138248 None:intergenic 15.0%
!!! TTTGTATATTCATTTTTTTC+AGG - chr6_3:138229-138248 Msa0932140:intron 15.0%
!!! TTGTATATTCATTTTTTTCA+GGG - chr6_3:138230-138249 Msa0932140:intron 15.0%
!! AATTAAAATAAGAATCTCAA+AGG + chr6_3:139111-139130 None:intergenic 15.0%
!!! CTAGATTTTAATGTATATTT+TGG - chr6_3:140005-140024 Msa0932140:intron 15.0%
!!! TTCTTCTTTTGATTTTTGTT+TGG - chr6_3:137571-137590 Msa0932140:intron 20.0%
!!! TTTTGATTTTTGTTTGGATT+AGG - chr6_3:137577-137596 Msa0932140:intron 20.0%
!!! AAAGTACTAATCAAACATTT+TGG + chr6_3:137611-137630 None:intergenic 20.0%
!! TGTACAAATACAGAAAATTT+AGG + chr6_3:138139-138158 None:intergenic 20.0%
!! TATCACATGATATTATTGTT+AGG + chr6_3:139369-139388 None:intergenic 20.0%
!!! CTAAAATATTTCTAAAGCAA+AGG + chr6_3:139562-139581 None:intergenic 20.0%
!!! CTTTGCTTTAGAAATATTTT+AGG - chr6_3:139560-139579 Msa0932140:intron 20.0%
!!! AAATTTTCATTTACTTTCTG+AGG - chr6_3:139895-139914 Msa0932140:intron 20.0%
!!! AATTTTCATTTACTTTCTGA+GGG - chr6_3:139896-139915 Msa0932140:intron 20.0%
!!! TTTTAGAATGAAGATATTTG+TGG + chr6_3:140054-140073 None:intergenic 20.0%
!! AATAAAAACTAACAACACAT+TGG - chr6_3:140487-140506 Msa0932140:CDS 20.0%
!! ACAAAGAAATTAATCATGAT+AGG - chr6_3:140524-140543 Msa0932140:CDS 20.0%
! AATCCAAGAAAAACAAGAAA+AGG + chr6_3:137482-137501 None:intergenic 25.0%
! ACTTTGTAACAGTAATAAAC+AGG - chr6_3:137626-137645 Msa0932140:CDS 25.0%
! CTTCACTCATTATATTCAAT+AGG + chr6_3:137746-137765 None:intergenic 25.0%
!! ATCATTCTCAATTTTCTTGT+GGG - chr6_3:137776-137795 Msa0932140:CDS 25.0%
!! TAGTCCTCATATTTTCATTT+TGG + chr6_3:137905-137924 None:intergenic 25.0%
! TGAAAATATGAGGACTAATT+TGG - chr6_3:137908-137927 Msa0932140:intron 25.0%
! AATTCTCCTAGAAAATTATG+AGG - chr6_3:137957-137976 Msa0932140:intron 25.0%
! ATTCTCCTAGAAAATTATGA+GGG - chr6_3:137958-137977 Msa0932140:intron 25.0%
! ATATACAAAAGGGACATTAA+GGG + chr6_3:138218-138237 None:intergenic 25.0%
! AATATACAAAAGGGACATTA+AGG + chr6_3:138219-138238 None:intergenic 25.0%
! AAGGTATAAATATTTAGACG+AGG + chr6_3:138299-138318 None:intergenic 25.0%
! TAGCTATTGGAATTTCTTAT+TGG - chr6_3:138856-138875 Msa0932140:intron 25.0%
!!! CAATATTGTGTAGTTTTGAA+TGG - chr6_3:139081-139100 Msa0932140:CDS 25.0%
!!! GAGATTCTTATTTTAATTGC+CGG - chr6_3:139113-139132 Msa0932140:CDS 25.0%
!!! AGATTCTTATTTTAATTGCC+GGG - chr6_3:139114-139133 Msa0932140:CDS 25.0%
! ATTTATAATGCATTGTCCTA+AGG - chr6_3:139200-139219 Msa0932140:CDS 25.0%
! TTTATAATGCATTGTCCTAA+GGG - chr6_3:139201-139220 Msa0932140:CDS 25.0%
! TGCTCTAATATATAGTCATT+AGG - chr6_3:139806-139825 Msa0932140:intron 25.0%
! AGTTGTGTGAATATAACAAT+AGG - chr6_3:139860-139879 Msa0932140:intron 25.0%
! GTTGTGTGAATATAACAATA+GGG - chr6_3:139861-139880 Msa0932140:intron 25.0%
!!! ATTCCTATTGGTTTGTTATT+AGG - chr6_3:140196-140215 Msa0932140:intron 25.0%
! AAACCTAATAACAAACCAAT+AGG + chr6_3:140202-140221 None:intergenic 25.0%
!! TCATCTAAAATTAAATGCGA+AGG - chr6_3:140222-140241 Msa0932140:intron 25.0%
!! CATCTAAAATTAAATGCGAA+GGG - chr6_3:140223-140242 Msa0932140:intron 25.0%
!! AAAGAAAAAAGTGCACAATT+TGG + chr6_3:140368-140387 None:intergenic 25.0%
! TTGTTGCAAAAAAACAAATG+TGG + chr6_3:140395-140414 None:intergenic 25.0%
!!! TTGTTTTTTTGCAACAATTG+AGG - chr6_3:140398-140417 Msa0932140:intron 25.0%
!!! TGTTGTTAGTTTTTATTGAC+TGG + chr6_3:140484-140503 None:intergenic 25.0%
!! ACTAACATCTAGACATATTT+TGG - chr6_3:140632-140651 Msa0932140:CDS 25.0%
TTCACAATATCTTCTTCAAG+TGG - chr6_3:137331-137350 Msa0932140:three_prime_UTR 30.0%
CAAGAAAAACAAGAAAAGGA+AGG + chr6_3:137478-137497 None:intergenic 30.0%
!!! CTTCCTTTTCTTGTTTTTCT+TGG - chr6_3:137476-137495 Msa0932140:intron 30.0%
! GATCATTCTCAATTTTCTTG+TGG - chr6_3:137775-137794 Msa0932140:CDS 30.0%
TCCATAAATCGTTGTATTAG+AGG - chr6_3:137866-137885 Msa0932140:intron 30.0%
CCATAAATCGTTGTATTAGA+GGG - chr6_3:137867-137886 Msa0932140:intron 30.0%
GTCTCCAAAATGAAAATATG+AGG - chr6_3:137898-137917 Msa0932140:intron 30.0%
GGATTTGTATACCATTCATT+TGG - chr6_3:138108-138127 Msa0932140:intron 30.0%
! TTTAGGATTCTCCAAATGAA+TGG + chr6_3:138122-138141 None:intergenic 30.0%
TATACAAAAGGGACATTAAG+GGG + chr6_3:138217-138236 None:intergenic 30.0%
! TTTCTTGTTTGCATTGTAGT+TGG - chr6_3:138452-138471 Msa0932140:CDS 30.0%
! TTCTTGTTTGCATTGTAGTT+GGG - chr6_3:138453-138472 Msa0932140:CDS 30.0%
ATATCCACACAAGAGATATT+GGG + chr6_3:138590-138609 None:intergenic 30.0%
AATATCCACACAAGAGATAT+TGG + chr6_3:138591-138610 None:intergenic 30.0%
! TTTTGCACATTCCTATTTGT+TGG - chr6_3:138790-138809 Msa0932140:CDS 30.0%
AAAACCAGAATCCAACAAAT+AGG + chr6_3:138804-138823 None:intergenic 30.0%
!!! TTGGATTCTGGTTTTTAAGT+TGG - chr6_3:138809-138828 Msa0932140:CDS 30.0%
!!! TGGATTCTGGTTTTTAAGTT+GGG - chr6_3:138810-138829 Msa0932140:CDS 30.0%
! CTTATTGGTTGAATGTGATA+TGG - chr6_3:138871-138890 Msa0932140:intron 30.0%
!!! ATCTTGGTTTTTTGACATGA+TGG + chr6_3:138921-138940 None:intergenic 30.0%
ATGAGTAGAAAACACAATCT+TGG + chr6_3:138937-138956 None:intergenic 30.0%
!!! TATTGTGTAGTTTTGAATGG+TGG - chr6_3:139084-139103 Msa0932140:CDS 30.0%
TTCTTCATTCCATATGCAAT+TGG - chr6_3:139299-139318 Msa0932140:CDS 30.0%
AGGATTATGTCACATATGTA+TGG + chr6_3:139349-139368 None:intergenic 30.0%
ACTCGTGTTTCAAATGAATT+AGG - chr6_3:139449-139468 Msa0932140:intron 30.0%
ACAAGTTGTGAATTACATTG+CGG - chr6_3:139604-139623 Msa0932140:intron 30.0%
! AGTACACATTCACGTTTTTA+GGG - chr6_3:139949-139968 Msa0932140:intron 30.0%
ATATAATGAATGTGAACTGC+AGG - chr6_3:140103-140122 Msa0932140:intron 30.0%
TATAATGAATGTGAACTGCA+GGG - chr6_3:140104-140123 Msa0932140:intron 30.0%
TATATTGTGGGAATTCCTAT+TGG - chr6_3:140184-140203 Msa0932140:intron 30.0%
TTGTAACTGCATTAACTGAT+TGG - chr6_3:140299-140318 Msa0932140:intron 30.0%
AAAAACTAACAACACATTGG+TGG - chr6_3:140490-140509 Msa0932140:CDS 30.0%
! TGTACATGTGATTTTTGTAC+TGG - chr6_3:140656-140675 Msa0932140:CDS 30.0%
! AAACTCTAGAGAGATGAGTA+AGG - chr6_3:137178-137197 Msa0932140:three_prime_UTR 35.0%
TCATCACTCTTTCTTAGCAA+TGG + chr6_3:137215-137234 None:intergenic 35.0%
GTTGAAGAAAGTGAGTTTCA+TGG - chr6_3:137283-137302 Msa0932140:three_prime_UTR 35.0%
TCAAGTGGTTTCTCTTATGA+TGG - chr6_3:137346-137365 Msa0932140:three_prime_UTR 35.0%
GGTATACTTGTTTCATTCTC+TGG - chr6_3:137380-137399 Msa0932140:three_prime_UTR 35.0%
AGTAACTTCAGCAAAAGACA+TGG + chr6_3:137417-137436 None:intergenic 35.0%
! ATGTCTTTTGCTGAAGTTAC+TGG - chr6_3:137416-137435 Msa0932140:CDS 35.0%
AGAGAGAAGAAGAACATACA+AGG + chr6_3:137451-137470 None:intergenic 35.0%
TAAACAGGATCTCATGTGAA+AGG - chr6_3:137641-137660 Msa0932140:CDS 35.0%
TGTCACTCTTTGATCTTGTT+AGG + chr6_3:137680-137699 None:intergenic 35.0%
CCCTCTAATACAACGATTTA+TGG + chr6_3:137870-137889 None:intergenic 35.0%
! CACAACCCTCATAATTTTCT+AGG + chr6_3:137966-137985 None:intergenic 35.0%
TTATGAGGGTTGTGTATTGA+TGG - chr6_3:137972-137991 Msa0932140:intron 35.0%
CTTATTTCAACTCTGTGTGT+AGG + chr6_3:138089-138108 None:intergenic 35.0%
CTACACACAGAGTTGAAATA+AGG - chr6_3:138087-138106 Msa0932140:intron 35.0%
TGTACATCTCAACGATCTAA+CGG - chr6_3:138153-138172 Msa0932140:intron 35.0%
! ATCTAACGGCTCAAGTTTTA+GGG - chr6_3:138167-138186 Msa0932140:intron 35.0%
GACATTATGACTGTGAAATG+TGG + chr6_3:138257-138276 None:intergenic 35.0%
TTTAGTATCAATGTCGTGTC+TGG - chr6_3:138374-138393 Msa0932140:CDS 35.0%
GATACTGAGCTAAAAACCAT+GGG + chr6_3:138762-138781 None:intergenic 35.0%
AGATACTGAGCTAAAAACCA+TGG + chr6_3:138763-138782 None:intergenic 35.0%
! CATTCCTATTTGTTGGATTC+TGG - chr6_3:138797-138816 Msa0932140:CDS 35.0%
!!! CTGGTTTTTAAGTTGGGATT+AGG - chr6_3:138816-138835 Msa0932140:intron 35.0%
GTTGAATGTGATATGGCTTT+GGG - chr6_3:138878-138897 Msa0932140:intron 35.0%
ATAGCATATTTGCAGAACTC+TGG + chr6_3:138975-138994 None:intergenic 35.0%
TGCAAATATGCTATTCCTTC+TGG - chr6_3:138981-139000 Msa0932140:CDS 35.0%
TAATCCTCAACTTGAAACCT+CGG - chr6_3:139145-139164 Msa0932140:CDS 35.0%
AACACAAACATCATGACATG+GGG + chr6_3:139418-139437 None:intergenic 35.0%
CAACACAAACATCATGACAT+GGG + chr6_3:139419-139438 None:intergenic 35.0%
ACAACACAAACATCATGACA+TGG + chr6_3:139420-139439 None:intergenic 35.0%
GTTTCAAATGAATTAGGAGC+AGG - chr6_3:139455-139474 Msa0932140:intron 35.0%
GTTAGAGTGGTTGTGATTAT+TGG - chr6_3:139503-139522 Msa0932140:intron 35.0%
TGTGATTATTGGAATTGCTG+AGG - chr6_3:139514-139533 Msa0932140:intron 35.0%
TGTGAATTACATTGCGGATA+TGG - chr6_3:139610-139629 Msa0932140:intron 35.0%
CTAACAGAAACACAAAGAAG+AGG + chr6_3:139638-139657 None:intergenic 35.0%
!! GTTAGTGCTGATAGTCTAAT+TGG - chr6_3:139653-139672 Msa0932140:intron 35.0%
! CAGTACACATTCACGTTTTT+AGG - chr6_3:139948-139967 Msa0932140:intron 35.0%
ATAATGAATGTGAACTGCAG+GGG - chr6_3:140105-140124 Msa0932140:intron 35.0%
CTTGGAGCTTACTATATTGT+GGG - chr6_3:140172-140191 Msa0932140:intron 35.0%
AATTAAATGCGAAGGGATTG+TGG - chr6_3:140230-140249 Msa0932140:intron 35.0%
ATTAACTGATTGGCAGAAAG+AGG - chr6_3:140309-140328 Msa0932140:intron 35.0%
TTGCTTATACAGCTGTTGTA+TGG - chr6_3:140580-140599 Msa0932140:CDS 35.0%
CATGTGCTCTCAAAATTTGT+AGG + chr6_3:140708-140727 None:intergenic 35.0%
!! AATTTTGAGAGCACATGCTT+TGG - chr6_3:140711-140730 Msa0932140:CDS 35.0%
CTAAGAAAGAGTGATGAGCA+TGG - chr6_3:137218-137237 Msa0932140:three_prime_UTR 40.0%
GAAACAGTTACAGCTACCAT+TGG + chr6_3:137314-137333 None:intergenic 40.0%
AGTGGTTTCTCTTATGATGG+TGG - chr6_3:137349-137368 Msa0932140:three_prime_UTR 40.0%
GTGGTTTCTCTTATGATGGT+GGG - chr6_3:137350-137369 Msa0932140:three_prime_UTR 40.0%
TTCAGCAAAAGACATGGCAA+TGG + chr6_3:137411-137430 None:intergenic 40.0%
GCTTAGAGATGCAAACTAGT+TGG + chr6_3:137516-137535 None:intergenic 40.0%
GTGAAGACTACAGAGTAGTT+GGG - chr6_3:137994-138013 Msa0932140:intron 40.0%
ACAGAGTAGTTGGGTATAGT+TGG - chr6_3:138003-138022 Msa0932140:intron 40.0%
! GATCTAACGGCTCAAGTTTT+AGG - chr6_3:138166-138185 Msa0932140:intron 40.0%
ACATTAAGGGGTTTGAATGG+TGG + chr6_3:138205-138224 None:intergenic 40.0%
GTTTGCATTGTAGTTGGGAA+TGG - chr6_3:138458-138477 Msa0932140:intron 40.0%
ACACTATGTGGACAAACCTT+TGG - chr6_3:138495-138514 Msa0932140:intron 40.0%
GTTTCCCAATATCTCTTGTG+TGG - chr6_3:138583-138602 Msa0932140:intron 40.0%
!!! CTGTTTTTTAGTCAAGACCC+TGG - chr6_3:138627-138646 Msa0932140:CDS 40.0%
AAGTGCATAGCCAAATAGAG+CGG + chr6_3:138694-138713 None:intergenic 40.0%
! ATTCGCTATTTCCAGACTCA+GGG - chr6_3:138726-138745 Msa0932140:intron 40.0%
AAGTTGGGATTAGGACACAT+TGG - chr6_3:138825-138844 Msa0932140:intron 40.0%
! ATTGGAGCTGCTTTAGCTAT+TGG - chr6_3:138843-138862 Msa0932140:intron 40.0%
GGTTGAATGTGATATGGCTT+TGG - chr6_3:138877-138896 Msa0932140:intron 40.0%
CATATTTGCAGAACTCTGGT+AGG + chr6_3:138971-138990 None:intergenic 40.0%
! TTCCTTCTGGACTCATGTTT+TGG - chr6_3:138994-139013 Msa0932140:CDS 40.0%
TACCAAAACATGAGTCCAGA+AGG + chr6_3:138999-139018 None:intergenic 40.0%
TTGAGGATTAGGTAAAAGCC+CGG + chr6_3:139135-139154 None:intergenic 40.0%
!! GAGGTTTCAAGTTGAGGATT+AGG + chr6_3:139146-139165 None:intergenic 40.0%
ACATTGCATAGTTCACCCTT+AGG + chr6_3:139219-139238 None:intergenic 40.0%
! TGGAATGAAGAAGTGCAATG+AGG + chr6_3:139291-139310 None:intergenic 40.0%
ACACAAACATCATGACATGG+GGG + chr6_3:139417-139436 None:intergenic 40.0%
AGGAAATCCAAAGACAGCTA+AGG - chr6_3:139475-139494 Msa0932140:intron 40.0%
GGAAATCCAAAGACAGCTAA+GGG - chr6_3:139476-139495 Msa0932140:intron 40.0%
AGTCTAATTGGAGCTCTTTC+AGG - chr6_3:139665-139684 Msa0932140:intron 40.0%
GTCGATGAATCGAGATTAGA+CGG + chr6_3:140032-140051 None:intergenic 40.0%
! AGGAGGTGGATTTCAAGAAA+TGG - chr6_3:140135-140154 Msa0932140:intron 40.0%
! GGAGGTGGATTTCAAGAAAT+GGG - chr6_3:140136-140155 Msa0932140:intron 40.0%
! GAGGTGGATTTCAAGAAATG+GGG - chr6_3:140137-140156 Msa0932140:intron 40.0%
! AGGTGGATTTCAAGAAATGG+GGG - chr6_3:140138-140157 Msa0932140:intron 40.0%
CCACAATATAGTAAGCTCCA+AGG + chr6_3:140174-140193 None:intergenic 40.0%
CCTTGGAGCTTACTATATTG+TGG - chr6_3:140171-140190 Msa0932140:intron 40.0%
CATGTGATTGATTGCATTGC+AGG - chr6_3:140430-140449 Msa0932140:intron 40.0%
ATTGCAGGCAACAAAAGCAA+GGG - chr6_3:140445-140464 Msa0932140:intron 40.0%
AACTAACAACACATTGGTGG+TGG - chr6_3:140493-140512 Msa0932140:CDS 40.0%
! CTCTAGAGAGATGAGTAAGG+AGG - chr6_3:137181-137200 Msa0932140:three_prime_UTR 45.0%
AGTGATGAGCATGGAAGTGA+TGG - chr6_3:137227-137246 Msa0932140:three_prime_UTR 45.0%
!! CTTATGATGGTGGGACATCT+CGG - chr6_3:137359-137378 Msa0932140:three_prime_UTR 45.0%
GGTGAAGACTACAGAGTAGT+TGG - chr6_3:137993-138012 Msa0932140:intron 45.0%
GTAGGATCTTGTCACACAAC+AGG + chr6_3:138071-138090 None:intergenic 45.0%
GGGACATTAAGGGGTTTGAA+TGG + chr6_3:138208-138227 None:intergenic 45.0%
GGTGCATTGGAAACACTATG+TGG - chr6_3:138483-138502 Msa0932140:intron 45.0%
! GCAGAGGAGTATGGAAAACT+TGG - chr6_3:138519-138538 Msa0932140:intron 45.0%
GAGCTACATGAGACATTCCA+GGG + chr6_3:138647-138666 None:intergenic 45.0%
TACCTCATTCCCGCTCTATT+TGG - chr6_3:138681-138700 Msa0932140:intron 45.0%
AGTGCATAGCCAAATAGAGC+GGG + chr6_3:138693-138712 None:intergenic 45.0%
! GATTCGCTATTTCCAGACTC+AGG - chr6_3:138725-138744 Msa0932140:intron 45.0%
GAAAGATCATTCCCTGAGTC+TGG + chr6_3:138740-138759 None:intergenic 45.0%
TCAGGGAATGATCTTTCCCA+TGG - chr6_3:138743-138762 Msa0932140:intron 45.0%
!! AGAACCGAGGTTTCAAGTTG+AGG + chr6_3:139152-139171 None:intergenic 45.0%
AAACCTCGGTTCTTTCTGTC+TGG - chr6_3:139159-139178 Msa0932140:CDS 45.0%
GCAGAAGCTCCAATTGCATA+TGG + chr6_3:139311-139330 None:intergenic 45.0%
ATGCAATTGGAGCTTCTGCA+AGG - chr6_3:139312-139331 Msa0932140:CDS 45.0%
ATTGGAGCTTCTGCAAGGTT+TGG - chr6_3:139317-139336 Msa0932140:CDS 45.0%
! AGCTTCTGCAAGGTTTGGTT+TGG - chr6_3:139322-139341 Msa0932140:CDS 45.0%
TTAGGGATGTCAGTGACTGT+TGG - chr6_3:139966-139985 Msa0932140:intron 45.0%
AAATGCGAAGGGATTGTGGA+TGG - chr6_3:140234-140253 Msa0932140:intron 45.0%
AATGCGAAGGGATTGTGGAT+GGG - chr6_3:140235-140254 Msa0932140:intron 45.0%
TTGTGGATGGGAACTCTATC+AGG - chr6_3:140247-140266 Msa0932140:intron 45.0%
CATTGCAGGCAACAAAAGCA+AGG - chr6_3:140444-140463 Msa0932140:intron 45.0%
GAGTTTCATGGCAGCTCCAA+TGG - chr6_3:137295-137314 Msa0932140:three_prime_UTR 50.0%
GCATTGTAGTTGGGAATGGC+TGG - chr6_3:138462-138481 Msa0932140:intron 50.0%
! TGGACAAACCTTTGGTGCAG+AGG - chr6_3:138503-138522 Msa0932140:intron 50.0%
! ACCTTTGGTGCAGAGGAGTA+TGG - chr6_3:138510-138529 Msa0932140:intron 50.0%
TCCATACTCCTCTGCACCAA+AGG + chr6_3:138514-138533 None:intergenic 50.0%
CGAGCTACATGAGACATTCC+AGG + chr6_3:138648-138667 None:intergenic 50.0%
AGCCAAATAGAGCGGGAATG+AGG + chr6_3:138686-138705 None:intergenic 50.0%
TCACCAGACAGAAAGAACCG+AGG + chr6_3:139165-139184 None:intergenic 50.0%
ACAGCTCCCTTAGCTGTCTT+TGG + chr6_3:139485-139504 None:intergenic 50.0%
AGCTAAGGGAGCTGTTAGAG+TGG - chr6_3:139490-139509 Msa0932140:intron 50.0%
ATGGGGGCTTATGTGAACCT+TGG - chr6_3:140154-140173 Msa0932140:intron 50.0%
AGGCAACAAAAGCAAGGGAG+AGG - chr6_3:140450-140469 Msa0932140:intron 50.0%
GTTGGGAATGGCTGGTGCAT+TGG - chr6_3:138470-138489 Msa0932140:intron 55.0%
TGAACTGCAGGGGTTGCTAG+AGG - chr6_3:140115-140134 Msa0932140:intron 55.0%
ACTGCAGGGGTTGCTAGAGG+AGG - chr6_3:140118-140137 Msa0932140:intron 60.0%
GCAGGGGTTGCTAGAGGAGG+TGG - chr6_3:140121-140140 Msa0932140:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 137156 140768 137156 ID=Msa0932140;Name=Msa0932140
chr6_3 mRNA 137156 140768 137156 ID=Msa0932140-mRNA-1;Parent=Msa0932140;Name=Msa0932140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=17|1|1|1|1|1|7|248|493
chr6_3 exon 137156 137472 137156 ID=Msa0932140-mRNA-1:exon:109;Parent=Msa0932140-mRNA-1
chr6_3 exon 137594 137799 137594 ID=Msa0932140-mRNA-1:exon:108;Parent=Msa0932140-mRNA-1
chr6_3 exon 138238 138476 138238 ID=Msa0932140-mRNA-1:exon:107;Parent=Msa0932140-mRNA-1
chr6_3 exon 138591 138647 138591 ID=Msa0932140-mRNA-1:exon:106;Parent=Msa0932140-mRNA-1
chr6_3 exon 138744 138830 138744 ID=Msa0932140-mRNA-1:exon:105;Parent=Msa0932140-mRNA-1
chr6_3 exon 138909 139453 138909 ID=Msa0932140-mRNA-1:exon:104;Parent=Msa0932140-mRNA-1
chr6_3 exon 140473 140768 140473 ID=Msa0932140-mRNA-1:exon:103;Parent=Msa0932140-mRNA-1
chr6_3 five_prime_UTR 140752 140768 140752 ID=Msa0932140-mRNA-1:five_prime_utr;Parent=Msa0932140-mRNA-1
chr6_3 CDS 140473 140751 140473 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 138909 139453 138909 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 138744 138830 138744 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 138591 138647 138591 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 138238 138476 138238 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 137594 137799 137594 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 CDS 137404 137472 137404 ID=Msa0932140-mRNA-1:cds;Parent=Msa0932140-mRNA-1
chr6_3 three_prime_UTR 137156 137403 137156 ID=Msa0932140-mRNA-1:three_prime_utr;Parent=Msa0932140-mRNA-1
Gene Sequence

>Msa0932140

ATGAAAAACTCTAGAGAGATGAGTAAGGAGGTGACAACACCATTGCTAAGAAAGAGTGATGAGCATGGAAGTGATGGAAGAGTTGAGATTGAGAATACATTCATTCAAGAGTTGAAGAAAGTGAGTTTCATGGCAGCTCCAATGGTAGCTGTAACTGTTTCACAATATCTTCTTCAAGTGGTTTCTCTTATGATGGTGGGACATCTCGGTATACTTGTTTCATTCTCTGGTGTTTCCATTGCCATGTCTTTTGCTGAAGTTACTGGCTTTAGTGTCCTTTTGGGAATGGCTGGTGCATTGGAAACACTATGTGGACAAACCTTTGGTGCAGAGGAGTATGGAAAACTTGGAAACTACACTTGCTGTGCAATATTAACTCTAACTGTAGTTTGTTTCCCAATATCTCTTGTGTGGATATTCACAGATAAAATACTACTGTTTTTTAGTCAAGACCCTGGAATGTCTCATGTAGCTCGCGAGTACTGCATATACCTCATTCCCGCTCTATTTGGCTATGCACTTCTTCAAGCGTTGATTCGCTATTTCCAGACTCAGGGAATGATCTTTCCCATGGTTTTTAGCTCAGTATCTGCTCTATTTTTGCACATTCCTATTTGTTGGATTCTGGTTTTTAAGTTGGGATTAGGACACATTGGAGCTGCTTTAGCTATTGGAATTTCTTATTGGTTGAATGTGATATGGCTTTGGGTTTATATTAAGTACTCTCCATCATGTCAAAAAACCAAGATTGTGTTTTCTACTCATGCTTTACATAACCTACCAGAGTTCTGCAAATATGCTATTCCTTCTGGACTCATGTTTTGTTTTGAATGGTGGTCCTTTGAGATTCTTATTTTAATTGCCGGGCTTTTACCTAATCCTCAACTTGAAACCTCGGTTCTTTCTGTCTGCTTGAACACTACCTCATTGCACTTCTTCATTCCATATGCAATTGGAGCTTCTGCAAGTACTCGTGTTTCAAATGAATTAGGAGCAGGAAATCCAAAGACAGCTAAGGGAGCTGTTAGAGTGGTTGTGATTATTGGAATTGCTGAGGCAATTATTGTCAGCACTTTCTTCCTTTGCTTTAGAAATATTTTAGGATATGCTTATAGCAATGATGAACAAGTTGTGAATTACATTGCGGATATGGTTCCTCTTCTTTGTGTTTCTGTTAGTGCTGATAGTCTAATTGGAGCTCTTTCAGGGGTTGCTAGAGGAGGTGGATTTCAAGAAATGGGGGCTTATGTGAACCTTGGAGCTTACTATATTGTGGGAATTCCTATTGGTTTGTTATTAGGTTTTCATCTAAAATTAAATGCGAAGGGATTGTGGATGGGAACTCTATCAGGATCTGTTTTAAATGTCATTATACTATCTATTGTAACTGCATTAACTGATTGGCAGAAAGAGGCAACAAAAGCAAGGGAGAGGATAATTGACCAGTCAATAAAAACTAACAACACATTGGTGGTGGCATGA
Protein sequence

>Msa0932140

MKNSREMSKEVTTPLLRKSDEHGSDGRVEIENTFIQELKKVSFMAAPMVAVTVSQYLLQVVSLMMVGHLGILVSFSGVSIAMSFAEVTGFSVLLGMAGALETLCGQTFGAEEYGKLGNYTCCAILTLTVVCFPISLVWIFTDKILLFFSQDPGMSHVAREYCIYLIPALFGYALLQALIRYFQTQGMIFPMVFSSVSALFLHIPICWILVFKLGLGHIGAALAIGISYWLNVIWLWVYIKYSPSCQKTKIVFSTHALHNLPEFCKYAIPSGLMFCFEWWSFEILILIAGLLPNPQLETSVLSVCLNTTSLHFFIPYAIGASASTRVSNELGAGNPKTAKGAVRVVVIIGIAEAIIVSTFFLCFRNILGYAYSNDEQVVNYIADMVPLLCVSVSADSLIGALSGVARGGGFQEMGAYVNLGAYYIVGIPIGLLLGFHLKLNAKGLWMGTLSGSVLNVIILSIVTALTDWQKEATKARERIIDQSIKTNNTLVVA*