AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138840 MtrunA17_Chr4g0067951 97.468 158 4 0 1 158 1 158 2.68e-108 305
Msa0138840 MtrunA17_Chr6g0462311 96.203 158 6 0 1 158 1 158 4.08e-107 302
Msa0138840 MtrunA17_Chr6g0462291 84.049 163 21 1 1 158 1 163 1.48e-92 266
Msa0138840 MtrunA17_Chr2g0295064 74.051 158 41 0 1 158 68 225 2.60e-81 239
Msa0138840 MtrunA17_Chr2g0295021 72.611 157 43 0 1 157 1 157 5.38e-80 233
Msa0138840 MtrunA17_Chr2g0295001 72.611 157 43 0 1 157 1 157 5.38e-80 233
Msa0138840 MtrunA17_Chr2g0295051 70.064 157 47 0 1 157 1 157 7.62e-78 228
Msa0138840 MtrunA17_Chr2g0295041 68.354 158 50 0 1 158 1 158 1.47e-75 222
Msa0138840 MtrunA17_Chr2g0295141 63.694 157 57 0 1 157 1 157 1.35e-68 204
Msa0138840 MtrunA17_Chr2g0295104 64.331 157 56 0 1 157 1 157 2.52e-68 204
Msa0138840 MtrunA17_Chr2g0295091 64.331 157 56 0 1 157 1 157 8.50e-68 202
Msa0138840 MtrunA17_Chr2g0295124 64.968 157 55 0 1 157 1 157 8.66e-67 200
Msa0138840 MtrunA17_Chr2g0295081 54.140 157 72 0 1 157 1 157 1.81e-54 169
Msa0138840 MtrunA17_Chr4g0067921 45.963 161 82 4 1 158 1 159 2.51e-37 125
Msa0138840 MtrunA17_Chr2g0295211 37.179 156 97 1 1 155 1 156 2.68e-33 115
Msa0138840 MtrunA17_Chr4g0067841 36.943 157 98 1 1 156 1 157 1.02e-32 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAACATAAATCTTATT+TGG 0.148128 1_3:-72067480 None:intergenic
CTCCATCAATTGCATCAATT+TGG 0.202998 1_3:-72067007 None:intergenic
TTGATGGCATCAACAGCTTT+TGG 0.227157 1_3:-72066750 None:intergenic
GATATCATTTGAAGCGAAAT+TGG 0.228714 1_3:+72067091 Msa0138840:CDS
GTAACTAAATATATTATAAT+AGG 0.237097 1_3:+72067540 Msa0138840:three_prime_UTR
TAGATGGATTAGTTGTAATT+AGG 0.259719 1_3:-72067263 None:intergenic
GGCCATTGAGGGTTATGTTT+TGG 0.293726 1_3:+72067235 Msa0138840:CDS
AACGGTTTCAACACTCTTGA+TGG 0.328088 1_3:-72066766 None:intergenic
GGTCCAAATGGAGGGTCTAT+TGG 0.333504 1_3:+72067119 Msa0138840:CDS
TCCTTTGGTTTGATATTTAA+CGG 0.347214 1_3:-72067150 None:intergenic
CACCAAATTGATGCAATTGA+TGG 0.359913 1_3:+72067005 Msa0138840:CDS
TAGTAGGTAGACTTGGTAGA+TGG 0.361526 1_3:-72067279 None:intergenic
GTCCAAATGGAGGGTCTATT+GGG 0.390136 1_3:+72067120 Msa0138840:CDS
AATTGGCTTAGCATCTCCTT+TGG 0.398977 1_3:-72067165 None:intergenic
TATAGTATAGTTGGAGGAGT+AGG 0.400784 1_3:+72067047 Msa0138840:CDS
TGCAATTGATGGAGCAAACT+TGG 0.407405 1_3:+72067016 Msa0138840:CDS
AATCAATAAATTAATACAAA+TGG 0.412812 1_3:+72067448 Msa0138840:three_prime_UTR
TTCCCAATAGACCCTCCATT+TGG 0.416216 1_3:-72067122 None:intergenic
AGAGCTTTGTAAAGCTTAGC+AGG 0.435032 1_3:-72066702 None:intergenic
AACGAAAGTGAGCTTCTTGA+CGG 0.435771 1_3:-72066811 None:intergenic
ACAGATGATAGTAGATTAGT+AGG 0.436784 1_3:-72067295 None:intergenic
AAGAAGCTCACTTTCGTTGA+GGG 0.454166 1_3:+72066816 Msa0138840:CDS
GGATTAGTTGTAATTAGGAT+TGG 0.464473 1_3:-72067258 None:intergenic
GTGAGCTTCTTGACGGTGCC+AGG 0.467117 1_3:-72066804 None:intergenic
GGTTGAGGAAGGCAAGGCAA+AGG 0.481278 1_3:+72067196 Msa0138840:CDS
GTTGAAACCGTTGAGGGAAA+TGG 0.483004 1_3:+72066777 Msa0138840:CDS
TTTGAAGCGAAATTGGTTGA+AGG 0.487809 1_3:+72067098 Msa0138840:CDS
GGGTATAACTATAGTATAGT+TGG 0.489142 1_3:+72067038 Msa0138840:CDS
ATAGTATAGTTGGAGGAGTA+GGG 0.491450 1_3:+72067048 Msa0138840:CDS
AGTAGATTAGTAGGTAGACT+TGG 0.500749 1_3:-72067286 None:intergenic
AGATGCTAAGCCAATTGAAA+AGG 0.515464 1_3:+72067172 Msa0138840:CDS
GTTGAGGGAAATGGTGGTCC+TGG 0.519714 1_3:+72066786 Msa0138840:CDS
GCCAATTGAAAAGGAGGTTG+AGG 0.520188 1_3:+72067181 Msa0138840:CDS
GGCCAAAACATAACCCTCAA+TGG 0.521409 1_3:-72067237 None:intergenic
CAAGAAGCTCACTTTCGTTG+AGG 0.534631 1_3:+72066815 Msa0138840:CDS
GCAATTGATGGAGCAAACTT+GGG 0.541306 1_3:+72067017 Msa0138840:CDS
GTTGAGGAAGGCAAGGCAAA+GGG 0.544771 1_3:+72067197 Msa0138840:CDS
AAGAGTGTTGAAACCGTTGA+GGG 0.546792 1_3:+72066771 Msa0138840:CDS
AATTTGGTGCAACACGTACA+AGG 0.554848 1_3:-72066991 None:intergenic
CAACAAAACACCAAATCTCC+TGG 0.558696 1_3:-72067411 None:intergenic
GGATGATATCATCAGAGTCA+TGG 0.567722 1_3:-72066728 None:intergenic
AAATTGGTTGAAGGTCCAAA+TGG 0.568255 1_3:+72067107 Msa0138840:CDS
AGGACCACCATTTCCCTCAA+CGG 0.572788 1_3:-72066784 None:intergenic
TATAACTATAGTATAGTTGG+AGG 0.584231 1_3:+72067041 Msa0138840:CDS
AGCAGGAGCAACTGTAGAGG+TGG 0.585421 1_3:-72066685 None:intergenic
CTTAGCAGGAGCAACTGTAG+AGG 0.591469 1_3:-72066688 None:intergenic
TGCTAAGCCAATTGAAAAGG+AGG 0.591628 1_3:+72067175 Msa0138840:CDS
ACCGTTAAATATCAAACCAA+AGG 0.596206 1_3:+72067149 Msa0138840:CDS
AGGAGTAGGGTTGCCAGACA+CGG 0.598102 1_3:+72067061 Msa0138840:CDS
TGGTTGAAGGTCCAAATGGA+GGG 0.601542 1_3:+72067111 Msa0138840:CDS
TTGGTTGAAGGTCCAAATGG+AGG 0.609517 1_3:+72067110 Msa0138840:CDS
ATTGAAAAGGAGGTTGAGGA+AGG 0.616285 1_3:+72067185 Msa0138840:CDS
CAAGAGTGTTGAAACCGTTG+AGG 0.622991 1_3:+72066770 Msa0138840:CDS
AAAGGAGGTTGAGGAAGGCA+AGG 0.629508 1_3:+72067190 Msa0138840:CDS
CAATTGATGGAGCAAACTTG+GGG 0.644212 1_3:+72067018 Msa0138840:CDS
GAAACCGTTGAGGGAAATGG+TGG 0.710996 1_3:+72066780 Msa0138840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATAAATTAATACAAA+TGG + chr1_3:72067448-72067467 Msa0138840:three_prime_UTR 10.0%
!! GTAACTAAATATATTATAAT+AGG + chr1_3:72067540-72067559 Msa0138840:three_prime_UTR 10.0%
!! AATCAATAAATTAATACAAA+TGG + chr1_3:72067448-72067467 Msa0138840:three_prime_UTR 10.0%
!! GTAACTAAATATATTATAAT+AGG + chr1_3:72067540-72067559 Msa0138840:three_prime_UTR 10.0%
!! AAGAAAAAACTTTATTACAT+TGG - chr1_3:72067366-72067385 None:intergenic 15.0%
!!! AATAAAGTTTTTTCTTTGTA+AGG + chr1_3:72067370-72067389 Msa0138840:three_prime_UTR 15.0%
!! TAAACAACATAAATCTTATT+TGG - chr1_3:72067483-72067502 None:intergenic 15.0%
!! AAGAAAAAACTTTATTACAT+TGG - chr1_3:72067366-72067385 None:intergenic 15.0%
!!! AATAAAGTTTTTTCTTTGTA+AGG + chr1_3:72067370-72067389 Msa0138840:three_prime_UTR 15.0%
!! TAAACAACATAAATCTTATT+TGG - chr1_3:72067483-72067502 None:intergenic 15.0%
! TATAACTATAGTATAGTTGG+AGG + chr1_3:72067041-72067060 Msa0138840:CDS 25.0%
!!! TCCTTTGGTTTGATATTTAA+CGG - chr1_3:72067153-72067172 None:intergenic 25.0%
!!! TAGATGGATTAGTTGTAATT+AGG - chr1_3:72067266-72067285 None:intergenic 25.0%
!! ATGTTGTTTACCAAAAATAC+TGG + chr1_3:72067493-72067512 Msa0138840:three_prime_UTR 25.0%
! TATAACTATAGTATAGTTGG+AGG + chr1_3:72067041-72067060 Msa0138840:CDS 25.0%
!!! TCCTTTGGTTTGATATTTAA+CGG - chr1_3:72067153-72067172 None:intergenic 25.0%
!!! TAGATGGATTAGTTGTAATT+AGG - chr1_3:72067266-72067285 None:intergenic 25.0%
!! ATGTTGTTTACCAAAAATAC+TGG + chr1_3:72067493-72067512 Msa0138840:three_prime_UTR 25.0%
!! TGTCGCACATGTTTTTAATA+TGG + chr1_3:72066898-72066917 Msa0138840:intron 30.0%
GGGTATAACTATAGTATAGT+TGG + chr1_3:72067038-72067057 Msa0138840:CDS 30.0%
! GATATCATTTGAAGCGAAAT+TGG + chr1_3:72067091-72067110 Msa0138840:CDS 30.0%
ACCGTTAAATATCAAACCAA+AGG + chr1_3:72067149-72067168 Msa0138840:CDS 30.0%
!! GGATTAGTTGTAATTAGGAT+TGG - chr1_3:72067261-72067280 None:intergenic 30.0%
ACAGATGATAGTAGATTAGT+AGG - chr1_3:72067298-72067317 None:intergenic 30.0%
!!! TTTTTTCTTGCTTTTGAACC+AGG + chr1_3:72067393-72067412 Msa0138840:three_prime_UTR 30.0%
TTGTTTACCAAAAATACTGG+AGG + chr1_3:72067496-72067515 Msa0138840:three_prime_UTR 30.0%
! TTTTACTCCTCCAGTATTTT+TGG - chr1_3:72067506-72067525 None:intergenic 30.0%
!! TGTCGCACATGTTTTTAATA+TGG + chr1_3:72066898-72066917 Msa0138840:intron 30.0%
GGGTATAACTATAGTATAGT+TGG + chr1_3:72067038-72067057 Msa0138840:CDS 30.0%
! GATATCATTTGAAGCGAAAT+TGG + chr1_3:72067091-72067110 Msa0138840:CDS 30.0%
ACCGTTAAATATCAAACCAA+AGG + chr1_3:72067149-72067168 Msa0138840:CDS 30.0%
!! GGATTAGTTGTAATTAGGAT+TGG - chr1_3:72067261-72067280 None:intergenic 30.0%
ACAGATGATAGTAGATTAGT+AGG - chr1_3:72067298-72067317 None:intergenic 30.0%
!!! TTTTTTCTTGCTTTTGAACC+AGG + chr1_3:72067393-72067412 Msa0138840:three_prime_UTR 30.0%
TTGTTTACCAAAAATACTGG+AGG + chr1_3:72067496-72067515 Msa0138840:three_prime_UTR 30.0%
! TTTTACTCCTCCAGTATTTT+TGG - chr1_3:72067506-72067525 None:intergenic 30.0%
ACCAACATAAATATGTACGC+AGG + chr1_3:72066960-72066979 Msa0138840:intron 35.0%
TCCTGCGTACATATTTATGT+TGG - chr1_3:72066964-72066983 None:intergenic 35.0%
AACATAAATATGTACGCAGG+AGG + chr1_3:72066963-72066982 Msa0138840:intron 35.0%
ACATAAATATGTACGCAGGA+GGG + chr1_3:72066964-72066983 Msa0138840:intron 35.0%
CACCAAATTGATGCAATTGA+TGG + chr1_3:72067005-72067024 Msa0138840:CDS 35.0%
CTCCATCAATTGCATCAATT+TGG - chr1_3:72067010-72067029 None:intergenic 35.0%
TATAGTATAGTTGGAGGAGT+AGG + chr1_3:72067047-72067066 Msa0138840:CDS 35.0%
ATAGTATAGTTGGAGGAGTA+GGG + chr1_3:72067048-72067067 Msa0138840:CDS 35.0%
! TTTGAAGCGAAATTGGTTGA+AGG + chr1_3:72067098-72067117 Msa0138840:CDS 35.0%
AAATTGGTTGAAGGTCCAAA+TGG + chr1_3:72067107-72067126 Msa0138840:CDS 35.0%
AGATGCTAAGCCAATTGAAA+AGG + chr1_3:72067172-72067191 Msa0138840:CDS 35.0%
AGTAGATTAGTAGGTAGACT+TGG - chr1_3:72067289-72067308 None:intergenic 35.0%
ACCAACATAAATATGTACGC+AGG + chr1_3:72066960-72066979 Msa0138840:intron 35.0%
TCCTGCGTACATATTTATGT+TGG - chr1_3:72066964-72066983 None:intergenic 35.0%
AACATAAATATGTACGCAGG+AGG + chr1_3:72066963-72066982 Msa0138840:intron 35.0%
ACATAAATATGTACGCAGGA+GGG + chr1_3:72066964-72066983 Msa0138840:intron 35.0%
CACCAAATTGATGCAATTGA+TGG + chr1_3:72067005-72067024 Msa0138840:CDS 35.0%
CTCCATCAATTGCATCAATT+TGG - chr1_3:72067010-72067029 None:intergenic 35.0%
TATAGTATAGTTGGAGGAGT+AGG + chr1_3:72067047-72067066 Msa0138840:CDS 35.0%
ATAGTATAGTTGGAGGAGTA+GGG + chr1_3:72067048-72067067 Msa0138840:CDS 35.0%
! TTTGAAGCGAAATTGGTTGA+AGG + chr1_3:72067098-72067117 Msa0138840:CDS 35.0%
AAATTGGTTGAAGGTCCAAA+TGG + chr1_3:72067107-72067126 Msa0138840:CDS 35.0%
AGATGCTAAGCCAATTGAAA+AGG + chr1_3:72067172-72067191 Msa0138840:CDS 35.0%
AGTAGATTAGTAGGTAGACT+TGG - chr1_3:72067289-72067308 None:intergenic 35.0%
! AGAGCTTTGTAAAGCTTAGC+AGG - chr1_3:72066705-72066724 None:intergenic 40.0%
GGATGATATCATCAGAGTCA+TGG - chr1_3:72066731-72066750 None:intergenic 40.0%
! TGATGGCATCAACAGCTTTT+GGG - chr1_3:72066752-72066771 None:intergenic 40.0%
!! TTGATGGCATCAACAGCTTT+TGG - chr1_3:72066753-72066772 None:intergenic 40.0%
AACGGTTTCAACACTCTTGA+TGG - chr1_3:72066769-72066788 None:intergenic 40.0%
!! AAGAGTGTTGAAACCGTTGA+GGG + chr1_3:72066771-72066790 Msa0138840:CDS 40.0%
AACGAAAGTGAGCTTCTTGA+CGG - chr1_3:72066814-72066833 None:intergenic 40.0%
AAGAAGCTCACTTTCGTTGA+GGG + chr1_3:72066816-72066835 Msa0138840:CDS 40.0%
!! AATTTGGTGCAACACGTACA+AGG - chr1_3:72066994-72067013 None:intergenic 40.0%
TGCAATTGATGGAGCAAACT+TGG + chr1_3:72067016-72067035 Msa0138840:CDS 40.0%
GCAATTGATGGAGCAAACTT+GGG + chr1_3:72067017-72067036 Msa0138840:CDS 40.0%
CAATTGATGGAGCAAACTTG+GGG + chr1_3:72067018-72067037 Msa0138840:CDS 40.0%
! GATATCTTTTCAACCGTGTC+TGG - chr1_3:72067077-72067096 None:intergenic 40.0%
! AATTGGCTTAGCATCTCCTT+TGG - chr1_3:72067168-72067187 None:intergenic 40.0%
TGCTAAGCCAATTGAAAAGG+AGG + chr1_3:72067175-72067194 Msa0138840:CDS 40.0%
! TCCTCAACCTCCTTTTCAAT+TGG - chr1_3:72067185-72067204 None:intergenic 40.0%
ATTGAAAAGGAGGTTGAGGA+AGG + chr1_3:72067185-72067204 Msa0138840:CDS 40.0%
! AAAGGGTGATGCTCTTTTCA+AGG + chr1_3:72067214-72067233 Msa0138840:CDS 40.0%
! TAGTAGGTAGACTTGGTAGA+TGG - chr1_3:72067282-72067301 None:intergenic 40.0%
! TGCTTTTGAACCAGGAGATT+TGG + chr1_3:72067401-72067420 Msa0138840:three_prime_UTR 40.0%
CAACAAAACACCAAATCTCC+TGG - chr1_3:72067414-72067433 None:intergenic 40.0%
! AGAGCTTTGTAAAGCTTAGC+AGG - chr1_3:72066705-72066724 None:intergenic 40.0%
GGATGATATCATCAGAGTCA+TGG - chr1_3:72066731-72066750 None:intergenic 40.0%
! TGATGGCATCAACAGCTTTT+GGG - chr1_3:72066752-72066771 None:intergenic 40.0%
!! TTGATGGCATCAACAGCTTT+TGG - chr1_3:72066753-72066772 None:intergenic 40.0%
AACGGTTTCAACACTCTTGA+TGG - chr1_3:72066769-72066788 None:intergenic 40.0%
!! AAGAGTGTTGAAACCGTTGA+GGG + chr1_3:72066771-72066790 Msa0138840:CDS 40.0%
AACGAAAGTGAGCTTCTTGA+CGG - chr1_3:72066814-72066833 None:intergenic 40.0%
AAGAAGCTCACTTTCGTTGA+GGG + chr1_3:72066816-72066835 Msa0138840:CDS 40.0%
!! AATTTGGTGCAACACGTACA+AGG - chr1_3:72066994-72067013 None:intergenic 40.0%
TGCAATTGATGGAGCAAACT+TGG + chr1_3:72067016-72067035 Msa0138840:CDS 40.0%
GCAATTGATGGAGCAAACTT+GGG + chr1_3:72067017-72067036 Msa0138840:CDS 40.0%
CAATTGATGGAGCAAACTTG+GGG + chr1_3:72067018-72067037 Msa0138840:CDS 40.0%
! GATATCTTTTCAACCGTGTC+TGG - chr1_3:72067077-72067096 None:intergenic 40.0%
! AATTGGCTTAGCATCTCCTT+TGG - chr1_3:72067168-72067187 None:intergenic 40.0%
TGCTAAGCCAATTGAAAAGG+AGG + chr1_3:72067175-72067194 Msa0138840:CDS 40.0%
! TCCTCAACCTCCTTTTCAAT+TGG - chr1_3:72067185-72067204 None:intergenic 40.0%
ATTGAAAAGGAGGTTGAGGA+AGG + chr1_3:72067185-72067204 Msa0138840:CDS 40.0%
! AAAGGGTGATGCTCTTTTCA+AGG + chr1_3:72067214-72067233 Msa0138840:CDS 40.0%
! TAGTAGGTAGACTTGGTAGA+TGG - chr1_3:72067282-72067301 None:intergenic 40.0%
! TGCTTTTGAACCAGGAGATT+TGG + chr1_3:72067401-72067420 Msa0138840:three_prime_UTR 40.0%
CAACAAAACACCAAATCTCC+TGG - chr1_3:72067414-72067433 None:intergenic 40.0%
!! CAAGAGTGTTGAAACCGTTG+AGG + chr1_3:72066770-72066789 Msa0138840:CDS 45.0%
GTTGAAACCGTTGAGGGAAA+TGG + chr1_3:72066777-72066796 Msa0138840:CDS 45.0%
CAAGAAGCTCACTTTCGTTG+AGG + chr1_3:72066815-72066834 Msa0138840:CDS 45.0%
TTGGTTGAAGGTCCAAATGG+AGG + chr1_3:72067110-72067129 Msa0138840:CDS 45.0%
TGGTTGAAGGTCCAAATGGA+GGG + chr1_3:72067111-72067130 Msa0138840:CDS 45.0%
GTCCAAATGGAGGGTCTATT+GGG + chr1_3:72067120-72067139 Msa0138840:CDS 45.0%
TTCCCAATAGACCCTCCATT+TGG - chr1_3:72067125-72067144 None:intergenic 45.0%
GCCAATTGAAAAGGAGGTTG+AGG + chr1_3:72067181-72067200 Msa0138840:CDS 45.0%
!! TGCTCTTTTCAAGGCCATTG+AGG + chr1_3:72067223-72067242 Msa0138840:CDS 45.0%
!! GCTCTTTTCAAGGCCATTGA+GGG + chr1_3:72067224-72067243 Msa0138840:CDS 45.0%
! GGCCATTGAGGGTTATGTTT+TGG + chr1_3:72067235-72067254 Msa0138840:CDS 45.0%
GGCCAAAACATAACCCTCAA+TGG - chr1_3:72067240-72067259 None:intergenic 45.0%
!! CAAGAGTGTTGAAACCGTTG+AGG + chr1_3:72066770-72066789 Msa0138840:CDS 45.0%
GTTGAAACCGTTGAGGGAAA+TGG + chr1_3:72066777-72066796 Msa0138840:CDS 45.0%
CAAGAAGCTCACTTTCGTTG+AGG + chr1_3:72066815-72066834 Msa0138840:CDS 45.0%
TTGGTTGAAGGTCCAAATGG+AGG + chr1_3:72067110-72067129 Msa0138840:CDS 45.0%
TGGTTGAAGGTCCAAATGGA+GGG + chr1_3:72067111-72067130 Msa0138840:CDS 45.0%
GTCCAAATGGAGGGTCTATT+GGG + chr1_3:72067120-72067139 Msa0138840:CDS 45.0%
TTCCCAATAGACCCTCCATT+TGG - chr1_3:72067125-72067144 None:intergenic 45.0%
GCCAATTGAAAAGGAGGTTG+AGG + chr1_3:72067181-72067200 Msa0138840:CDS 45.0%
!! TGCTCTTTTCAAGGCCATTG+AGG + chr1_3:72067223-72067242 Msa0138840:CDS 45.0%
!! GCTCTTTTCAAGGCCATTGA+GGG + chr1_3:72067224-72067243 Msa0138840:CDS 45.0%
! GGCCATTGAGGGTTATGTTT+TGG + chr1_3:72067235-72067254 Msa0138840:CDS 45.0%
GGCCAAAACATAACCCTCAA+TGG - chr1_3:72067240-72067259 None:intergenic 45.0%
CTTAGCAGGAGCAACTGTAG+AGG - chr1_3:72066691-72066710 None:intergenic 50.0%
GAAACCGTTGAGGGAAATGG+TGG + chr1_3:72066780-72066799 Msa0138840:CDS 50.0%
AGGACCACCATTTCCCTCAA+CGG - chr1_3:72066787-72066806 None:intergenic 50.0%
GGTCCAAATGGAGGGTCTAT+TGG + chr1_3:72067119-72067138 Msa0138840:CDS 50.0%
AAAGGAGGTTGAGGAAGGCA+AGG + chr1_3:72067190-72067209 Msa0138840:CDS 50.0%
GTTGAGGAAGGCAAGGCAAA+GGG + chr1_3:72067197-72067216 Msa0138840:CDS 50.0%
CTTAGCAGGAGCAACTGTAG+AGG - chr1_3:72066691-72066710 None:intergenic 50.0%
GAAACCGTTGAGGGAAATGG+TGG + chr1_3:72066780-72066799 Msa0138840:CDS 50.0%
AGGACCACCATTTCCCTCAA+CGG - chr1_3:72066787-72066806 None:intergenic 50.0%
GGTCCAAATGGAGGGTCTAT+TGG + chr1_3:72067119-72067138 Msa0138840:CDS 50.0%
AAAGGAGGTTGAGGAAGGCA+AGG + chr1_3:72067190-72067209 Msa0138840:CDS 50.0%
GTTGAGGAAGGCAAGGCAAA+GGG + chr1_3:72067197-72067216 Msa0138840:CDS 50.0%
AGCAGGAGCAACTGTAGAGG+TGG - chr1_3:72066688-72066707 None:intergenic 55.0%
GTTGAGGGAAATGGTGGTCC+TGG + chr1_3:72066786-72066805 Msa0138840:CDS 55.0%
AGGAGTAGGGTTGCCAGACA+CGG + chr1_3:72067061-72067080 Msa0138840:CDS 55.0%
GGTTGAGGAAGGCAAGGCAA+AGG + chr1_3:72067196-72067215 Msa0138840:CDS 55.0%
AGCAGGAGCAACTGTAGAGG+TGG - chr1_3:72066688-72066707 None:intergenic 55.0%
GTTGAGGGAAATGGTGGTCC+TGG + chr1_3:72066786-72066805 Msa0138840:CDS 55.0%
AGGAGTAGGGTTGCCAGACA+CGG + chr1_3:72067061-72067080 Msa0138840:CDS 55.0%
GGTTGAGGAAGGCAAGGCAA+AGG + chr1_3:72067196-72067215 Msa0138840:CDS 55.0%
GTGAGCTTCTTGACGGTGCC+AGG - chr1_3:72066807-72066826 None:intergenic 60.0%
GTGAGCTTCTTGACGGTGCC+AGG - chr1_3:72066807-72066826 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72066657 72067582 72066657 ID=Msa0138840;Name=Msa0138840
chr1_3 mRNA 72066657 72067582 72066657 ID=Msa0138840-mRNA-1;Parent=Msa0138840;Name=Msa0138840-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0.5|1|1|1|2|305|158
chr1_3 exon 72066657 72066837 72066657 ID=Msa0138840-mRNA-1:exon:25117;Parent=Msa0138840-mRNA-1
chr1_3 exon 72066982 72067582 72066982 ID=Msa0138840-mRNA-1:exon:25118;Parent=Msa0138840-mRNA-1
chr1_3 CDS 72066657 72066837 72066657 ID=Msa0138840-mRNA-1:cds;Parent=Msa0138840-mRNA-1
chr1_3 CDS 72066982 72067277 72066982 ID=Msa0138840-mRNA-1:cds;Parent=Msa0138840-mRNA-1
chr1_3 three_prime_UTR 72067278 72067582 72067278 ID=Msa0138840-mRNA-1:three_prime_utr;Parent=Msa0138840-mRNA-1
Gene Sequence

>Msa0138840

ATGGGTGTATTCACATTTGAGCAAGAAACCACCTCTACAGTTGCTCCTGCTAAGCTTTACAAAGCTCTTGTCCATGACTCTGATGATATCATCCCAAAAGCTGTTGATGCCATCAAGAGTGTTGAAACCGTTGAGGGAAATGGTGGTCCTGGCACCGTCAAGAAGCTCACTTTCGTTGAGGGAGGGCAAACCTTGTACGTGTTGCACCAAATTGATGCAATTGATGGAGCAAACTTGGGGTATAACTATAGTATAGTTGGAGGAGTAGGGTTGCCAGACACGGTTGAAAAGATATCATTTGAAGCGAAATTGGTTGAAGGTCCAAATGGAGGGTCTATTGGGAAGACGACCGTTAAATATCAAACCAAAGGAGATGCTAAGCCAATTGAAAAGGAGGTTGAGGAAGGCAAGGCAAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTAATTACAACTAA
Protein sequence

>Msa0138840

MGVFTFEQETTSTVAPAKLYKALVHDSDDIIPKAVDAIKSVETVEGNGGPGTVKKLTFVEGGQTLYVLHQIDAIDGANLGYNYSIVGGVGLPDTVEKISFEAKLVEGPNGGSIGKTTVKYQTKGDAKPIEKEVEEGKAKGDALFKAIEGYVLANPNYN*