AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115190 MtrunA17_Chr7g0261461 100.000 64 0 0 1 64 1 64 1.79e-43 134
Msa1115190 MtrunA17_Chr8g0368411 85.938 64 9 0 1 64 1 64 6.10e-36 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115190 AT2G20490.1 79.688 64 13 0 1 64 1 64 9.30e-33 107
Msa1115190 AT2G20490.3 79.688 64 13 0 1 64 1 64 9.30e-33 107
Msa1115190 AT2G20490.2 78.125 64 13 1 1 64 1 63 2.56e-30 101

Find 42 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGATGAAGGAAGGGTTTA+AGG 0.193216 7_3:-62591847 None:intergenic
TGCCACTTAGGTCTAACATT+TGG 0.292262 7_3:-62593782 None:intergenic
TGATTCAAGGTTTACCTTAG+TGG 0.314345 7_3:-62592087 None:intergenic
AATACTTTGGAGCTGGATGC+TGG 0.320451 7_3:-62593622 None:intergenic
GCCACTTAGGTCTAACATTT+GGG 0.336600 7_3:-62593781 None:intergenic
GTTAAACTGAAGAAGCGATT+TGG 0.348976 7_3:+62593587 Msa1115190:CDS
CTATTATAGTGATTCTCCTT+TGG 0.390617 7_3:+62593665 Msa1115190:three_prime_UTR
TGCTCTGAAAATTTGTCATC+AGG 0.402146 7_3:-62593560 None:intergenic
ATTTGTCATCAGGTGAAAAC+CGG 0.402459 7_3:-62593550 None:intergenic
TGGTTCTTCGCCTCCATCCT+AGG 0.418805 7_3:+62591869 Msa1115190:five_prime_UTR
AAGTTCAACATTTGCCACTT+AGG 0.422991 7_3:-62593794 None:intergenic
CTTTCTTCTGTTTCTCAACA+AGG 0.424831 7_3:+62591896 Msa1115190:five_prime_UTR
GTTGCATACGTTGAAAAGTC+AGG 0.457075 7_3:+62593971 Msa1115190:three_prime_UTR
TTGAATATAGCTCAATACTT+TGG 0.457998 7_3:-62593635 None:intergenic
AGGCGAAGAACCAGCGATGA+AGG 0.485944 7_3:-62591859 None:intergenic
TTAAACCCTTCCTTCATCGC+TGG 0.491406 7_3:+62591849 Msa1115190:five_prime_UTR
AGGGTTTAAGGTTGTTTACA+AGG 0.498410 7_3:-62591835 None:intergenic
TGCAGAAAGAGTCACCGCTT+GGG 0.506313 7_3:+62592181 Msa1115190:intron
AAATCATATCAAAATTGCTA+TGG 0.510024 7_3:+62593939 Msa1115190:three_prime_UTR
TTTGGAGCTGGATGCTGGGT+TGG 0.510089 7_3:-62593617 None:intergenic
ATACTTTGGAGCTGGATGCT+GGG 0.511217 7_3:-62593621 None:intergenic
ATAGCTCAATACTTTGGAGC+TGG 0.511390 7_3:-62593629 None:intergenic
TGTTGAACTTCACTGATGAA+TGG 0.522292 7_3:+62593807 Msa1115190:three_prime_UTR
TTGCAGAAAGAGTCACCGCT+TGG 0.526675 7_3:+62592180 Msa1115190:intron
TCCCAAATGTTAGACCTAAG+TGG 0.527548 7_3:+62593780 Msa1115190:three_prime_UTR
GCTACTCAATCTGCTCATCC+AGG 0.527880 7_3:+62592207 Msa1115190:CDS
GCATGAACACAAAACGAGTA+GGG 0.541568 7_3:+62594007 Msa1115190:three_prime_UTR
AGAAGAAAGAAAACCTAGGA+TGG 0.552691 7_3:-62591882 None:intergenic
TTTGTCATCAGGTGAAAACC+GGG 0.561589 7_3:-62593549 None:intergenic
GAAGAACCAGCGATGAAGGA+AGG 0.562917 7_3:-62591855 None:intergenic
TTGCATACGTTGAAAAGTCA+GGG 0.612443 7_3:+62593972 Msa1115190:three_prime_UTR
AAGAACCAGCGATGAAGGAA+GGG 0.619458 7_3:-62591854 None:intergenic
GATGTAAAACTGAAGATACA+TGG 0.619474 7_3:-62592039 None:intergenic
GGGTTTAAGGTTGTTTACAA+GGG 0.621045 7_3:-62591834 None:intergenic
TGACAAGGTCTACACCACTA+AGG 0.622254 7_3:+62592073 Msa1115190:CDS
CATCAACGATAACGGTGACA+AGG 0.625395 7_3:+62592058 Msa1115190:CDS
AAACAGAAGAAAGAAAACCT+AGG 0.627521 7_3:-62591886 None:intergenic
AGCATGAACACAAAACGAGT+AGG 0.631761 7_3:+62594006 Msa1115190:three_prime_UTR
ACGTTGAAAAGTCAGGGAGA+AGG 0.636255 7_3:+62593978 Msa1115190:three_prime_UTR
AGACTGCTGCTAATCACCAA+AGG 0.652442 7_3:-62593681 None:intergenic
AGAAAGAAAACCTAGGATGG+AGG 0.653116 7_3:-62591879 None:intergenic
GATTGAGTAGCTAACCCAAG+CGG 0.699776 7_3:-62592195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATTTAAAA+AGG + chr7_3:62592964-62592983 Msa1115190:intron 0.0%
!! ATATATATATATATTTAAAA+AGG + chr7_3:62592964-62592983 Msa1115190:intron 0.0%
!!! AATAAAGAAATATTACTTTT+TGG + chr7_3:62593240-62593259 Msa1115190:intron 10.0%
!!! AATAAAGAAATATTACTTTT+TGG + chr7_3:62593240-62593259 Msa1115190:intron 10.0%
!! TTCAATAAATTGTAAACAAA+AGG - chr7_3:62591980-62591999 None:intergenic 15.0%
!!! TATATTTTTCAAATAAACGT+TGG - chr7_3:62592131-62592150 None:intergenic 15.0%
!! TCAAAGATTAAAGAAAAAAA+TGG - chr7_3:62592263-62592282 None:intergenic 15.0%
!!! AAATATTACTTTTTGGAATT+TGG + chr7_3:62593247-62593266 Msa1115190:intron 15.0%
!! TAAAAAAAAAATGAGACATA+GGG + chr7_3:62593302-62593321 Msa1115190:intron 15.0%
!!! TTTTGCATTCTAAATAATAT+TGG - chr7_3:62593473-62593492 None:intergenic 15.0%
!! TTCAATAAATTGTAAACAAA+AGG - chr7_3:62591980-62591999 None:intergenic 15.0%
!!! TATATTTTTCAAATAAACGT+TGG - chr7_3:62592131-62592150 None:intergenic 15.0%
!! TCAAAGATTAAAGAAAAAAA+TGG - chr7_3:62592263-62592282 None:intergenic 15.0%
!!! AAATATTACTTTTTGGAATT+TGG + chr7_3:62593247-62593266 Msa1115190:intron 15.0%
!! TAAAAAAAAAATGAGACATA+GGG + chr7_3:62593302-62593321 Msa1115190:intron 15.0%
!!! TTTTGCATTCTAAATAATAT+TGG - chr7_3:62593473-62593492 None:intergenic 15.0%
!!! TTTCTTTAATCTTTGAAACA+TGG + chr7_3:62592267-62592286 Msa1115190:intron 20.0%
!! TATTGAAAATTGAAACTGAT+AGG + chr7_3:62592451-62592470 Msa1115190:intron 20.0%
!! TAAAGTAAGGAAATTGATAT+GGG - chr7_3:62592892-62592911 None:intergenic 20.0%
!!! CTCAAGTTAAATTGTTTTAA+CGG - chr7_3:62593151-62593170 None:intergenic 20.0%
!! CTAAAAAAAAAATGAGACAT+AGG + chr7_3:62593301-62593320 Msa1115190:intron 20.0%
!! AAATCATATCAAAATTGCTA+TGG + chr7_3:62593939-62593958 Msa1115190:three_prime_UTR 20.0%
!!! TTTCTTTAATCTTTGAAACA+TGG + chr7_3:62592267-62592286 Msa1115190:intron 20.0%
!! TATTGAAAATTGAAACTGAT+AGG + chr7_3:62592451-62592470 Msa1115190:intron 20.0%
!! TAAAGTAAGGAAATTGATAT+GGG - chr7_3:62592892-62592911 None:intergenic 20.0%
!!! CTCAAGTTAAATTGTTTTAA+CGG - chr7_3:62593151-62593170 None:intergenic 20.0%
!! CTAAAAAAAAAATGAGACAT+AGG + chr7_3:62593301-62593320 Msa1115190:intron 20.0%
!! AAATCATATCAAAATTGCTA+TGG + chr7_3:62593939-62593958 Msa1115190:three_prime_UTR 20.0%
! GTATTAAAATCCTTGATTCA+AGG - chr7_3:62592103-62592122 None:intergenic 25.0%
!!! GATATTTGTTGTCAAAGTAT+TGG + chr7_3:62592343-62592362 Msa1115190:intron 25.0%
!! CAATATTTTACCTCGAAAAT+TGG - chr7_3:62592436-62592455 None:intergenic 25.0%
! TCTATGTGTCATGAAAATTT+AGG + chr7_3:62592649-62592668 Msa1115190:intron 25.0%
! AGTAAAAAATGAGAACTAGA+GGG - chr7_3:62592776-62592795 None:intergenic 25.0%
! AAGTAAAAAATGAGAACTAG+AGG - chr7_3:62592777-62592796 None:intergenic 25.0%
! GTAAAGTAAGGAAATTGATA+TGG - chr7_3:62592893-62592912 None:intergenic 25.0%
!!! CGTTAAAACAATTTAACTTG+AGG + chr7_3:62593149-62593168 Msa1115190:intron 25.0%
!!! ATGTTTTGAATTGTGAAGTA+AGG + chr7_3:62593328-62593347 Msa1115190:intron 25.0%
!!! TGTTTTGAATTGTGAAGTAA+GGG + chr7_3:62593329-62593348 Msa1115190:intron 25.0%
! TAGAAGTTGTCAAAACAAAA+AGG - chr7_3:62593440-62593459 None:intergenic 25.0%
! CATTAATAGTTGTAGAAAGT+TGG - chr7_3:62593497-62593516 None:intergenic 25.0%
! TTGAATATAGCTCAATACTT+TGG - chr7_3:62593638-62593657 None:intergenic 25.0%
! GTATTAAAATCCTTGATTCA+AGG - chr7_3:62592103-62592122 None:intergenic 25.0%
!!! GATATTTGTTGTCAAAGTAT+TGG + chr7_3:62592343-62592362 Msa1115190:intron 25.0%
!! CAATATTTTACCTCGAAAAT+TGG - chr7_3:62592436-62592455 None:intergenic 25.0%
! TCTATGTGTCATGAAAATTT+AGG + chr7_3:62592649-62592668 Msa1115190:intron 25.0%
! AGTAAAAAATGAGAACTAGA+GGG - chr7_3:62592776-62592795 None:intergenic 25.0%
! AAGTAAAAAATGAGAACTAG+AGG - chr7_3:62592777-62592796 None:intergenic 25.0%
! GTAAAGTAAGGAAATTGATA+TGG - chr7_3:62592893-62592912 None:intergenic 25.0%
!!! CGTTAAAACAATTTAACTTG+AGG + chr7_3:62593149-62593168 Msa1115190:intron 25.0%
!!! ATGTTTTGAATTGTGAAGTA+AGG + chr7_3:62593328-62593347 Msa1115190:intron 25.0%
!!! TGTTTTGAATTGTGAAGTAA+GGG + chr7_3:62593329-62593348 Msa1115190:intron 25.0%
! TAGAAGTTGTCAAAACAAAA+AGG - chr7_3:62593440-62593459 None:intergenic 25.0%
! CATTAATAGTTGTAGAAAGT+TGG - chr7_3:62593497-62593516 None:intergenic 25.0%
! TTGAATATAGCTCAATACTT+TGG - chr7_3:62593638-62593657 None:intergenic 25.0%
AAACAGAAGAAAGAAAACCT+AGG - chr7_3:62591889-62591908 None:intergenic 30.0%
!!! AACTTTTTTCTACAGTGACA+AGG + chr7_3:62591998-62592017 Msa1115190:intron 30.0%
GATGTAAAACTGAAGATACA+TGG - chr7_3:62592042-62592061 None:intergenic 30.0%
! CAGTTTTACATCAACGATAA+CGG + chr7_3:62592050-62592069 Msa1115190:CDS 30.0%
!! GCTAATTTTAGCAAAATACC+TGG - chr7_3:62592228-62592247 None:intergenic 30.0%
TTTGCATTTGGATTTGCAAT+TGG + chr7_3:62592486-62592505 Msa1115190:intron 30.0%
TTGGATTTGCAATTGGATAT+AGG + chr7_3:62592493-62592512 Msa1115190:intron 30.0%
TGGATTTGCAATTGGATATA+GGG + chr7_3:62592494-62592513 Msa1115190:intron 30.0%
! TTAGGACCTATTCATTTTCA+TGG + chr7_3:62592667-62592686 Msa1115190:intron 30.0%
TTTGCAATGAGAATTAAGAG+TGG - chr7_3:62592719-62592738 None:intergenic 30.0%
TCAATTTCCTTACTTTACCT+TGG + chr7_3:62592895-62592914 Msa1115190:intron 30.0%
!!! GTGATTTTGGTTACAACATT+AGG + chr7_3:62593086-62593105 Msa1115190:intron 30.0%
CTATTATAGTGATTCTCCTT+TGG + chr7_3:62593665-62593684 Msa1115190:three_prime_UTR 30.0%
! ACATTTGGGAAAGATTTTCA+CGG - chr7_3:62593770-62593789 None:intergenic 30.0%
AAACAGAAGAAAGAAAACCT+AGG - chr7_3:62591889-62591908 None:intergenic 30.0%
!!! AACTTTTTTCTACAGTGACA+AGG + chr7_3:62591998-62592017 Msa1115190:intron 30.0%
GATGTAAAACTGAAGATACA+TGG - chr7_3:62592042-62592061 None:intergenic 30.0%
! CAGTTTTACATCAACGATAA+CGG + chr7_3:62592050-62592069 Msa1115190:CDS 30.0%
!! GCTAATTTTAGCAAAATACC+TGG - chr7_3:62592228-62592247 None:intergenic 30.0%
TTTGCATTTGGATTTGCAAT+TGG + chr7_3:62592486-62592505 Msa1115190:intron 30.0%
TTGGATTTGCAATTGGATAT+AGG + chr7_3:62592493-62592512 Msa1115190:intron 30.0%
TGGATTTGCAATTGGATATA+GGG + chr7_3:62592494-62592513 Msa1115190:intron 30.0%
! TTAGGACCTATTCATTTTCA+TGG + chr7_3:62592667-62592686 Msa1115190:intron 30.0%
TTTGCAATGAGAATTAAGAG+TGG - chr7_3:62592719-62592738 None:intergenic 30.0%
TCAATTTCCTTACTTTACCT+TGG + chr7_3:62592895-62592914 Msa1115190:intron 30.0%
!!! GTGATTTTGGTTACAACATT+AGG + chr7_3:62593086-62593105 Msa1115190:intron 30.0%
CTATTATAGTGATTCTCCTT+TGG + chr7_3:62593665-62593684 Msa1115190:three_prime_UTR 30.0%
! ACATTTGGGAAAGATTTTCA+CGG - chr7_3:62593770-62593789 None:intergenic 30.0%
AGAAGAAAGAAAACCTAGGA+TGG - chr7_3:62591885-62591904 None:intergenic 35.0%
! CTTTCTTCTGTTTCTCAACA+AGG + chr7_3:62591896-62591915 Msa1115190:five_prime_UTR 35.0%
! TTTTTCTACAGTGACAAGGT+TGG + chr7_3:62592002-62592021 Msa1115190:intron 35.0%
TGATTCAAGGTTTACCTTAG+TGG - chr7_3:62592090-62592109 None:intergenic 35.0%
CTAAGGTAAACCTTGAATCA+AGG + chr7_3:62592090-62592109 Msa1115190:intron 35.0%
TCAGCTAGAAACTTTGCATT+TGG + chr7_3:62592474-62592493 Msa1115190:intron 35.0%
GGATTTGCAATTGGATATAG+GGG + chr7_3:62592495-62592514 Msa1115190:intron 35.0%
! TAGGGGAGGTATACATAAAA+AGG + chr7_3:62592512-62592531 Msa1115190:intron 35.0%
AGAGAGATTCAAACATAGAG+AGG + chr7_3:62592574-62592593 Msa1115190:intron 35.0%
AGACAGACACATTTGAGAAT+AGG + chr7_3:62592619-62592638 Msa1115190:intron 35.0%
AGTGGACCATGAAAATGAAT+AGG - chr7_3:62592676-62592695 None:intergenic 35.0%
AATCGAAAACAAGGGATGAT+AGG - chr7_3:62592845-62592864 None:intergenic 35.0%
GGATTTGCAATCGAAAACAA+GGG - chr7_3:62592853-62592872 None:intergenic 35.0%
TGGATTTGCAATCGAAAACA+AGG - chr7_3:62592854-62592873 None:intergenic 35.0%
TCAATCTCCAAGGTAAAGTA+AGG - chr7_3:62592905-62592924 None:intergenic 35.0%
TTGTAACCAAAATCACTGTG+GGG - chr7_3:62593082-62593101 None:intergenic 35.0%
GTTGTAACCAAAATCACTGT+GGG - chr7_3:62593083-62593102 None:intergenic 35.0%
TGTTGTAACCAAAATCACTG+TGG - chr7_3:62593084-62593103 None:intergenic 35.0%
ACAACAAAAGAAGTAGACGA+GGG - chr7_3:62593215-62593234 None:intergenic 35.0%
AACAACAAAAGAAGTAGACG+AGG - chr7_3:62593216-62593235 None:intergenic 35.0%
ATTTGTCATCAGGTGAAAAC+CGG - chr7_3:62593553-62593572 None:intergenic 35.0%
!! TGCTCTGAAAATTTGTCATC+AGG - chr7_3:62593563-62593582 None:intergenic 35.0%
GTTAAACTGAAGAAGCGATT+TGG + chr7_3:62593587-62593606 Msa1115190:CDS 35.0%
! AAGTTCAACATTTGCCACTT+AGG - chr7_3:62593797-62593816 None:intergenic 35.0%
TGTTGAACTTCACTGATGAA+TGG + chr7_3:62593807-62593826 Msa1115190:three_prime_UTR 35.0%
TTGCATACGTTGAAAAGTCA+GGG + chr7_3:62593972-62593991 Msa1115190:three_prime_UTR 35.0%
AGAAGAAAGAAAACCTAGGA+TGG - chr7_3:62591885-62591904 None:intergenic 35.0%
! CTTTCTTCTGTTTCTCAACA+AGG + chr7_3:62591896-62591915 Msa1115190:five_prime_UTR 35.0%
! TTTTTCTACAGTGACAAGGT+TGG + chr7_3:62592002-62592021 Msa1115190:intron 35.0%
TGATTCAAGGTTTACCTTAG+TGG - chr7_3:62592090-62592109 None:intergenic 35.0%
CTAAGGTAAACCTTGAATCA+AGG + chr7_3:62592090-62592109 Msa1115190:intron 35.0%
TCAGCTAGAAACTTTGCATT+TGG + chr7_3:62592474-62592493 Msa1115190:intron 35.0%
GGATTTGCAATTGGATATAG+GGG + chr7_3:62592495-62592514 Msa1115190:intron 35.0%
! TAGGGGAGGTATACATAAAA+AGG + chr7_3:62592512-62592531 Msa1115190:intron 35.0%
AGAGAGATTCAAACATAGAG+AGG + chr7_3:62592574-62592593 Msa1115190:intron 35.0%
AGACAGACACATTTGAGAAT+AGG + chr7_3:62592619-62592638 Msa1115190:intron 35.0%
AGTGGACCATGAAAATGAAT+AGG - chr7_3:62592676-62592695 None:intergenic 35.0%
AATCGAAAACAAGGGATGAT+AGG - chr7_3:62592845-62592864 None:intergenic 35.0%
GGATTTGCAATCGAAAACAA+GGG - chr7_3:62592853-62592872 None:intergenic 35.0%
TGGATTTGCAATCGAAAACA+AGG - chr7_3:62592854-62592873 None:intergenic 35.0%
TCAATCTCCAAGGTAAAGTA+AGG - chr7_3:62592905-62592924 None:intergenic 35.0%
TTGTAACCAAAATCACTGTG+GGG - chr7_3:62593082-62593101 None:intergenic 35.0%
GTTGTAACCAAAATCACTGT+GGG - chr7_3:62593083-62593102 None:intergenic 35.0%
TGTTGTAACCAAAATCACTG+TGG - chr7_3:62593084-62593103 None:intergenic 35.0%
ACAACAAAAGAAGTAGACGA+GGG - chr7_3:62593215-62593234 None:intergenic 35.0%
AACAACAAAAGAAGTAGACG+AGG - chr7_3:62593216-62593235 None:intergenic 35.0%
ATTTGTCATCAGGTGAAAAC+CGG - chr7_3:62593553-62593572 None:intergenic 35.0%
!! TGCTCTGAAAATTTGTCATC+AGG - chr7_3:62593563-62593582 None:intergenic 35.0%
GTTAAACTGAAGAAGCGATT+TGG + chr7_3:62593587-62593606 Msa1115190:CDS 35.0%
! AAGTTCAACATTTGCCACTT+AGG - chr7_3:62593797-62593816 None:intergenic 35.0%
TGTTGAACTTCACTGATGAA+TGG + chr7_3:62593807-62593826 Msa1115190:three_prime_UTR 35.0%
TTGCATACGTTGAAAAGTCA+GGG + chr7_3:62593972-62593991 Msa1115190:three_prime_UTR 35.0%
AGAAAGAAAACCTAGGATGG+AGG - chr7_3:62591882-62591901 None:intergenic 40.0%
GAAAATTGGATGCGTGTCAT+TGG - chr7_3:62592422-62592441 None:intergenic 40.0%
TTTGCAATTGGATATAGGGG+AGG + chr7_3:62592498-62592517 Msa1115190:intron 40.0%
GATTCAAACATAGAGAGGTG+TGG + chr7_3:62592579-62592598 Msa1115190:intron 40.0%
GCACATTTGAGAATTGAGAG+TGG - chr7_3:62592694-62592713 None:intergenic 40.0%
GCAATGAGAATTAAGAGTGG+CGG - chr7_3:62592716-62592735 None:intergenic 40.0%
ATGGGTCGTGTTAGAAACTT+TGG - chr7_3:62592874-62592893 None:intergenic 40.0%
AAGCATGGACACATGAGTTT+CGG - chr7_3:62593047-62593066 None:intergenic 40.0%
! ATCTGATGCATTTTCCGTGT+TGG + chr7_3:62593177-62593196 Msa1115190:intron 40.0%
! TCTGATGCATTTTCCGTGTT+GGG + chr7_3:62593178-62593197 Msa1115190:intron 40.0%
!! GCACTCTTTTGATTCTGCAT+TGG + chr7_3:62593386-62593405 Msa1115190:intron 40.0%
TTTGTCATCAGGTGAAAACC+GGG - chr7_3:62593552-62593571 None:intergenic 40.0%
!! ATAGCTCAATACTTTGGAGC+TGG - chr7_3:62593632-62593651 None:intergenic 40.0%
! TGATTAGCAGCAGTCTTTTG+TGG + chr7_3:62593688-62593707 Msa1115190:three_prime_UTR 40.0%
! GGGAAAGATTTTCACGGAAT+GGG - chr7_3:62593764-62593783 None:intergenic 40.0%
! TGGGAAAGATTTTCACGGAA+TGG - chr7_3:62593765-62593784 None:intergenic 40.0%
TCCCAAATGTTAGACCTAAG+TGG + chr7_3:62593780-62593799 Msa1115190:three_prime_UTR 40.0%
GCCACTTAGGTCTAACATTT+GGG - chr7_3:62593784-62593803 None:intergenic 40.0%
! TGCCACTTAGGTCTAACATT+TGG - chr7_3:62593785-62593804 None:intergenic 40.0%
GTTGCATACGTTGAAAAGTC+AGG + chr7_3:62593971-62593990 Msa1115190:three_prime_UTR 40.0%
AGCATGAACACAAAACGAGT+AGG + chr7_3:62594006-62594025 Msa1115190:three_prime_UTR 40.0%
GCATGAACACAAAACGAGTA+GGG + chr7_3:62594007-62594026 Msa1115190:three_prime_UTR 40.0%
AGAAAGAAAACCTAGGATGG+AGG - chr7_3:62591882-62591901 None:intergenic 40.0%
GAAAATTGGATGCGTGTCAT+TGG - chr7_3:62592422-62592441 None:intergenic 40.0%
TTTGCAATTGGATATAGGGG+AGG + chr7_3:62592498-62592517 Msa1115190:intron 40.0%
GATTCAAACATAGAGAGGTG+TGG + chr7_3:62592579-62592598 Msa1115190:intron 40.0%
GCACATTTGAGAATTGAGAG+TGG - chr7_3:62592694-62592713 None:intergenic 40.0%
GCAATGAGAATTAAGAGTGG+CGG - chr7_3:62592716-62592735 None:intergenic 40.0%
ATGGGTCGTGTTAGAAACTT+TGG - chr7_3:62592874-62592893 None:intergenic 40.0%
AAGCATGGACACATGAGTTT+CGG - chr7_3:62593047-62593066 None:intergenic 40.0%
! ATCTGATGCATTTTCCGTGT+TGG + chr7_3:62593177-62593196 Msa1115190:intron 40.0%
! TCTGATGCATTTTCCGTGTT+GGG + chr7_3:62593178-62593197 Msa1115190:intron 40.0%
!! GCACTCTTTTGATTCTGCAT+TGG + chr7_3:62593386-62593405 Msa1115190:intron 40.0%
TTTGTCATCAGGTGAAAACC+GGG - chr7_3:62593552-62593571 None:intergenic 40.0%
!! ATAGCTCAATACTTTGGAGC+TGG - chr7_3:62593632-62593651 None:intergenic 40.0%
! TGATTAGCAGCAGTCTTTTG+TGG + chr7_3:62593688-62593707 Msa1115190:three_prime_UTR 40.0%
! GGGAAAGATTTTCACGGAAT+GGG - chr7_3:62593764-62593783 None:intergenic 40.0%
! TGGGAAAGATTTTCACGGAA+TGG - chr7_3:62593765-62593784 None:intergenic 40.0%
TCCCAAATGTTAGACCTAAG+TGG + chr7_3:62593780-62593799 Msa1115190:three_prime_UTR 40.0%
GCCACTTAGGTCTAACATTT+GGG - chr7_3:62593784-62593803 None:intergenic 40.0%
! TGCCACTTAGGTCTAACATT+TGG - chr7_3:62593785-62593804 None:intergenic 40.0%
GTTGCATACGTTGAAAAGTC+AGG + chr7_3:62593971-62593990 Msa1115190:three_prime_UTR 40.0%
AGCATGAACACAAAACGAGT+AGG + chr7_3:62594006-62594025 Msa1115190:three_prime_UTR 40.0%
AGCGATGAAGGAAGGGTTTA+AGG - chr7_3:62591850-62591869 None:intergenic 45.0%
TTAAACCCTTCCTTCATCGC+TGG + chr7_3:62591849-62591868 Msa1115190:five_prime_UTR 45.0%
AAGAACCAGCGATGAAGGAA+GGG - chr7_3:62591857-62591876 None:intergenic 45.0%
! CATCAACGATAACGGTGACA+AGG + chr7_3:62592058-62592077 Msa1115190:CDS 45.0%
TGACAAGGTCTACACCACTA+AGG + chr7_3:62592073-62592092 Msa1115190:CDS 45.0%
GATTGAGTAGCTAACCCAAG+CGG - chr7_3:62592198-62592217 None:intergenic 45.0%
! TGACACGCATCCAATTTTCG+AGG + chr7_3:62592423-62592442 Msa1115190:intron 45.0%
CTAGAGGGATACGTTGAACA+TGG - chr7_3:62592761-62592780 None:intergenic 45.0%
!! GGGAAAAGGTCTTTGAAGCA+TGG - chr7_3:62593062-62593081 None:intergenic 45.0%
CCAAAATCACTGTGGGGAAA+AGG - chr7_3:62593076-62593095 None:intergenic 45.0%
! CCTTTTCCCCACAGTGATTT+TGG + chr7_3:62593073-62593092 Msa1115190:intron 45.0%
! CTGATGCATTTTCCGTGTTG+GGG + chr7_3:62593179-62593198 Msa1115190:intron 45.0%
GGTTTATAGAAGCCCCAACA+CGG - chr7_3:62593194-62593213 None:intergenic 45.0%
!! ATACTTTGGAGCTGGATGCT+GGG - chr7_3:62593624-62593643 None:intergenic 45.0%
!! AATACTTTGGAGCTGGATGC+TGG - chr7_3:62593625-62593644 None:intergenic 45.0%
AGACTGCTGCTAATCACCAA+AGG - chr7_3:62593684-62593703 None:intergenic 45.0%
ACGTTGAAAAGTCAGGGAGA+AGG + chr7_3:62593978-62593997 Msa1115190:three_prime_UTR 45.0%
AGCGATGAAGGAAGGGTTTA+AGG - chr7_3:62591850-62591869 None:intergenic 45.0%
TTAAACCCTTCCTTCATCGC+TGG + chr7_3:62591849-62591868 Msa1115190:five_prime_UTR 45.0%
AAGAACCAGCGATGAAGGAA+GGG - chr7_3:62591857-62591876 None:intergenic 45.0%
! CATCAACGATAACGGTGACA+AGG + chr7_3:62592058-62592077 Msa1115190:CDS 45.0%
TGACAAGGTCTACACCACTA+AGG + chr7_3:62592073-62592092 Msa1115190:CDS 45.0%
GATTGAGTAGCTAACCCAAG+CGG - chr7_3:62592198-62592217 None:intergenic 45.0%
! TGACACGCATCCAATTTTCG+AGG + chr7_3:62592423-62592442 Msa1115190:intron 45.0%
CTAGAGGGATACGTTGAACA+TGG - chr7_3:62592761-62592780 None:intergenic 45.0%
!! GGGAAAAGGTCTTTGAAGCA+TGG - chr7_3:62593062-62593081 None:intergenic 45.0%
CCAAAATCACTGTGGGGAAA+AGG - chr7_3:62593076-62593095 None:intergenic 45.0%
! CCTTTTCCCCACAGTGATTT+TGG + chr7_3:62593073-62593092 Msa1115190:intron 45.0%
! CTGATGCATTTTCCGTGTTG+GGG + chr7_3:62593179-62593198 Msa1115190:intron 45.0%
GGTTTATAGAAGCCCCAACA+CGG - chr7_3:62593194-62593213 None:intergenic 45.0%
!! ATACTTTGGAGCTGGATGCT+GGG - chr7_3:62593624-62593643 None:intergenic 45.0%
!! AATACTTTGGAGCTGGATGC+TGG - chr7_3:62593625-62593644 None:intergenic 45.0%
AGACTGCTGCTAATCACCAA+AGG - chr7_3:62593684-62593703 None:intergenic 45.0%
ACGTTGAAAAGTCAGGGAGA+AGG + chr7_3:62593978-62593997 Msa1115190:three_prime_UTR 45.0%
GAAGAACCAGCGATGAAGGA+AGG - chr7_3:62591858-62591877 None:intergenic 50.0%
TTGCAGAAAGAGTCACCGCT+TGG + chr7_3:62592180-62592199 Msa1115190:intron 50.0%
TGCAGAAAGAGTCACCGCTT+GGG + chr7_3:62592181-62592200 Msa1115190:intron 50.0%
GCTACTCAATCTGCTCATCC+AGG + chr7_3:62592207-62592226 Msa1115190:CDS 50.0%
TCAACACGCGTCAATCTCCA+AGG - chr7_3:62592915-62592934 None:intergenic 50.0%
TGGAGATTGACGCGTGTTGA+TGG + chr7_3:62592915-62592934 Msa1115190:intron 50.0%
! TGTTTTCCGAAACTGCAGCC+CGG + chr7_3:62593531-62593550 Msa1115190:intron 50.0%
TGAAAACCGGGCTGCAGTTT+CGG - chr7_3:62593540-62593559 None:intergenic 50.0%
GAAGAACCAGCGATGAAGGA+AGG - chr7_3:62591858-62591877 None:intergenic 50.0%
TTGCAGAAAGAGTCACCGCT+TGG + chr7_3:62592180-62592199 Msa1115190:intron 50.0%
TGCAGAAAGAGTCACCGCTT+GGG + chr7_3:62592181-62592200 Msa1115190:intron 50.0%
GCTACTCAATCTGCTCATCC+AGG + chr7_3:62592207-62592226 Msa1115190:CDS 50.0%
TCAACACGCGTCAATCTCCA+AGG - chr7_3:62592915-62592934 None:intergenic 50.0%
TGGAGATTGACGCGTGTTGA+TGG + chr7_3:62592915-62592934 Msa1115190:intron 50.0%
! TGTTTTCCGAAACTGCAGCC+CGG + chr7_3:62593531-62593550 Msa1115190:intron 50.0%
TGAAAACCGGGCTGCAGTTT+CGG - chr7_3:62593540-62593559 None:intergenic 50.0%
AGGCGAAGAACCAGCGATGA+AGG - chr7_3:62591862-62591881 None:intergenic 55.0%
TGGTTCTTCGCCTCCATCCT+AGG + chr7_3:62591869-62591888 Msa1115190:five_prime_UTR 55.0%
! TTTGGAGCTGGATGCTGGGT+TGG - chr7_3:62593620-62593639 None:intergenic 55.0%
AGGCGAAGAACCAGCGATGA+AGG - chr7_3:62591862-62591881 None:intergenic 55.0%
TGGTTCTTCGCCTCCATCCT+AGG + chr7_3:62591869-62591888 Msa1115190:five_prime_UTR 55.0%
! TTTGGAGCTGGATGCTGGGT+TGG - chr7_3:62593620-62593639 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 62591837 62594029 62591837 ID=Msa1115190;Name=Msa1115190
chr7_3 mRNA 62591837 62594029 62591837 ID=Msa1115190-mRNA-1;Parent=Msa1115190;Name=Msa1115190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=109|1|1|1|0.66|0.5|4|383|64
chr7_3 exon 62591837 62591917 62591837 ID=Msa1115190-mRNA-1:exon:14447;Parent=Msa1115190-mRNA-1
chr7_3 exon 62592013 62592094 62592013 ID=Msa1115190-mRNA-1:exon:14448;Parent=Msa1115190-mRNA-1
chr7_3 exon 62592186 62592228 62592186 ID=Msa1115190-mRNA-1:exon:14449;Parent=Msa1115190-mRNA-1
chr7_3 exon 62593549 62594029 62593549 ID=Msa1115190-mRNA-1:exon:14450;Parent=Msa1115190-mRNA-1
chr7_3 five_prime_UTR 62591837 62591917 62591837 ID=Msa1115190-mRNA-1:five_prime_utr;Parent=Msa1115190-mRNA-1
chr7_3 five_prime_UTR 62592013 62592040 62592013 ID=Msa1115190-mRNA-1:five_prime_utr;Parent=Msa1115190-mRNA-1
chr7_3 CDS 62592041 62592094 62592041 ID=Msa1115190-mRNA-1:cds;Parent=Msa1115190-mRNA-1
chr7_3 CDS 62592186 62592228 62592186 ID=Msa1115190-mRNA-1:cds;Parent=Msa1115190-mRNA-1
chr7_3 CDS 62593549 62593646 62593549 ID=Msa1115190-mRNA-1:cds;Parent=Msa1115190-mRNA-1
chr7_3 three_prime_UTR 62593647 62594029 62593647 ID=Msa1115190-mRNA-1:three_prime_utr;Parent=Msa1115190-mRNA-1
Gene Sequence

>Msa1115190

ATGTATCTTCAGTTTTACATCAACGATAACGGTGACAAGGTCTACACCACTAAGAAAGAGTCACCGCTTGGGTTAGCTACTCAATCTGCTCATCCAGCCCGGTTTTCACCTGATGACAAATTTTCAGAGCAGAGAGTTAAACTGAAGAAGCGATTTGGACTGTTACCAACCCAGCATCCAGCTCCAAAGTATTGA
Protein sequence

>Msa1115190

MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKFSEQRVKLKKRFGLLPTQHPAPKY*