Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0155730 | XP_013467010.1 | 78.000 | 150 | 0 | 1 | 1 | 117 | 1 | 150 | 2.11e-68 | 212 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0155730 | sp|O23320|CML8_ARATH | 62.069 | 145 | 22 | 1 | 5 | 116 | 6 | 150 | 4.67e-55 | 171 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0155730 | I3SJF9 | 78.000 | 150 | 0 | 1 | 1 | 117 | 1 | 150 | 1.01e-68 | 212 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0104770 | Msa0155730 | 0.828762 | 7.505749e-55 | -8.615850e-47 |
Msa0155510 | Msa0155730 | 0.963392 | 4.988095e-122 | -8.615850e-47 |
Msa0155730 | Msa0242720 | 0.812420 | 4.277735e-51 | -8.615850e-47 |
Msa0155730 | Msa0318490 | 0.808949 | 2.408066e-50 | -8.615850e-47 |
Msa0155730 | Msa0390170 | 0.813726 | 2.212303e-51 | -8.615850e-47 |
Msa0155730 | Msa0525930 | 0.953990 | 8.072841e-112 | -8.615850e-47 |
Msa0155730 | Msa0561110 | 0.809546 | 1.794057e-50 | -8.615850e-47 |
Msa0155730 | Msa0584370 | 0.806244 | 9.038590e-50 | -8.615850e-47 |
Msa0155730 | Msa0652600 | 0.827814 | 1.270536e-54 | -8.615850e-47 |
Msa0155730 | Msa0682160 | 0.800445 | 1.436621e-48 | -8.615850e-47 |
Msa0155730 | Msa0698280 | 0.804836 | 1.783735e-49 | -8.615850e-47 |
Msa0155730 | Msa0786940 | 0.800626 | 1.319514e-48 | -8.615850e-47 |
Msa0155730 | Msa0945330 | 0.804109 | 2.529593e-49 | -8.615850e-47 |
Msa0155730 | Msa1041250 | 0.818000 | 2.463187e-52 | -8.615850e-47 |
Msa0155730 | Msa1056890 | 0.804901 | 1.729000e-49 | -8.615850e-47 |
Msa0155730 | Msa1075090 | 0.801507 | 8.715154e-49 | -8.615850e-47 |
Msa0155730 | Msa1110900 | 0.807105 | 5.946191e-50 | -8.615850e-47 |
Msa0155730 | Msa1165670 | 0.812178 | 4.832034e-51 | -8.615850e-47 |
Msa0155730 | Msa1179340 | 0.817322 | 3.502761e-52 | -8.615850e-47 |
Msa0155730 | Msa1233090 | 0.807285 | 5.447086e-50 | -8.615850e-47 |
Msa0155730 | Msa1361980 | 0.803793 | 2.942282e-49 | -8.615850e-47 |
Msa0155730 | Msa1366480 | 0.824370 | 8.376201e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0155730 | MtrunA17_Chr1g0166281 | 78.000 | 150 | 0 | 1 | 1 | 117 | 1 | 150 | 1.94e-72 | 212 |
Msa0155730 | MtrunA17_Chr1g0188171 | 65.772 | 149 | 18 | 1 | 1 | 116 | 1 | 149 | 1.37e-60 | 182 |
Msa0155730 | MtrunA17_Chr3g0093271 | 59.184 | 147 | 27 | 1 | 1 | 114 | 52 | 198 | 4.68e-54 | 167 |
Msa0155730 | MtrunA17_Chr3g0093271 | 47.692 | 65 | 34 | 0 | 12 | 76 | 136 | 200 | 3.20e-12 | 60.5 |
Msa0155730 | MtrunA17_Chr6g0460211 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 1.79e-53 | 164 |
Msa0155730 | MtrunA17_Chr6g0460211 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 1.35e-12 | 60.5 |
Msa0155730 | MtrunA17_Chr5g0440931 | 58.108 | 148 | 29 | 1 | 1 | 115 | 1 | 148 | 9.88e-53 | 162 |
Msa0155730 | MtrunA17_Chr5g0440931 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 1.35e-12 | 60.5 |
Msa0155730 | MtrunA17_Chr7g0254731 | 57.432 | 148 | 30 | 1 | 1 | 115 | 1 | 148 | 5.76e-52 | 160 |
Msa0155730 | MtrunA17_Chr7g0254731 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 1.09e-12 | 60.5 |
Msa0155730 | MtrunA17_Chr7g0274101 | 49.664 | 149 | 42 | 3 | 1 | 116 | 1 | 149 | 3.39e-38 | 125 |
Msa0155730 | MtrunA17_Chr1g0185001 | 45.578 | 147 | 46 | 2 | 1 | 114 | 1 | 146 | 2.82e-34 | 115 |
Msa0155730 | MtrunA17_Chr3g0100471 | 56.338 | 71 | 31 | 0 | 5 | 75 | 45 | 115 | 1.38e-23 | 87.8 |
Msa0155730 | MtrunA17_Chr3g0100541 | 42.636 | 129 | 56 | 2 | 1 | 111 | 41 | 169 | 1.41e-21 | 84.3 |
Msa0155730 | MtrunA17_Chr5g0398751 | 39.316 | 117 | 66 | 2 | 1 | 117 | 1 | 112 | 3.33e-21 | 82.4 |
Msa0155730 | MtrunA17_Chr8g0366401 | 31.973 | 147 | 64 | 2 | 5 | 115 | 10 | 156 | 2.31e-20 | 80.9 |
Msa0155730 | MtrunA17_Chr7g0245231 | 35.616 | 146 | 61 | 1 | 5 | 117 | 23 | 168 | 1.34e-19 | 79.0 |
Msa0155730 | MtrunA17_Chr1g0161211 | 38.235 | 136 | 51 | 1 | 12 | 114 | 46 | 181 | 2.92e-19 | 79.0 |
Msa0155730 | MtrunA17_Chr6g0450921 | 40.566 | 106 | 60 | 1 | 12 | 117 | 29 | 131 | 4.86e-19 | 77.4 |
Msa0155730 | MtrunA17_Chr8g0391691 | 40.566 | 106 | 60 | 1 | 12 | 117 | 36 | 138 | 6.71e-19 | 77.8 |
Msa0155730 | MtrunA17_Chr8g0391691 | 51.515 | 66 | 31 | 1 | 5 | 69 | 101 | 166 | 4.80e-14 | 65.1 |
Msa0155730 | MtrunA17_Chr3g0100511 | 39.231 | 130 | 61 | 2 | 1 | 112 | 41 | 170 | 1.70e-18 | 76.3 |
Msa0155730 | MtrunA17_Chr3g0100561 | 37.692 | 130 | 63 | 1 | 1 | 112 | 41 | 170 | 4.91e-18 | 75.1 |
Msa0155730 | MtrunA17_Chr4g0062221 | 31.206 | 141 | 62 | 1 | 8 | 113 | 7 | 147 | 5.36e-18 | 74.7 |
Msa0155730 | MtrunA17_Chr4g0062221 | 43.421 | 76 | 39 | 2 | 2 | 76 | 78 | 150 | 1.47e-12 | 60.8 |
Msa0155730 | MtrunA17_Chr5g0397101 | 31.944 | 144 | 67 | 3 | 1 | 113 | 360 | 503 | 2.76e-16 | 73.2 |
Msa0155730 | MtrunA17_Chr8g0368681 | 34.188 | 117 | 76 | 1 | 1 | 117 | 1 | 116 | 1.03e-15 | 68.6 |
Msa0155730 | MtrunA17_Chr8g0368681 | 38.356 | 73 | 42 | 1 | 4 | 76 | 82 | 151 | 2.62e-11 | 57.4 |
Msa0155730 | MtrunA17_Chr8g0392951 | 34.815 | 135 | 54 | 2 | 12 | 113 | 24 | 157 | 1.28e-15 | 68.6 |
Msa0155730 | MtrunA17_Chr8g0392951 | 42.188 | 64 | 37 | 0 | 10 | 73 | 94 | 157 | 9.78e-11 | 55.8 |
Msa0155730 | MtrunA17_Chr4g0033601 | 31.915 | 141 | 61 | 1 | 12 | 117 | 5 | 145 | 1.31e-15 | 68.2 |
Msa0155730 | MtrunA17_Chr4g0074811 | 29.932 | 147 | 70 | 2 | 1 | 115 | 385 | 530 | 1.85e-15 | 70.9 |
Msa0155730 | MtrunA17_Chr1g0169581 | 32.117 | 137 | 58 | 2 | 12 | 113 | 4 | 140 | 5.20e-15 | 66.6 |
Msa0155730 | MtrunA17_Chr5g0434951 | 32.593 | 135 | 57 | 2 | 12 | 113 | 4 | 137 | 1.09e-14 | 65.5 |
Msa0155730 | MtrunA17_Chr7g0256701 | 35.455 | 110 | 64 | 3 | 12 | 117 | 73 | 179 | 1.12e-14 | 67.0 |
Msa0155730 | MtrunA17_Chr5g0444171 | 30.345 | 145 | 68 | 2 | 1 | 113 | 386 | 529 | 1.23e-14 | 68.6 |
Msa0155730 | MtrunA17_Chr8g0387671 | 31.250 | 144 | 68 | 3 | 1 | 113 | 360 | 503 | 1.90e-14 | 68.2 |
Msa0155730 | MtrunA17_Chr6g0482731 | 35.036 | 137 | 52 | 4 | 12 | 113 | 26 | 160 | 8.59e-14 | 63.9 |
Msa0155730 | MtrunA17_Chr6g0482731 | 38.667 | 75 | 46 | 0 | 13 | 87 | 100 | 174 | 2.97e-11 | 57.4 |
Msa0155730 | MtrunA17_Chr4g0059951 | 29.054 | 148 | 71 | 2 | 1 | 115 | 367 | 513 | 1.94e-13 | 65.1 |
Msa0155730 | MtrunA17_Chr1g0176751 | 28.472 | 144 | 71 | 2 | 1 | 113 | 418 | 560 | 3.74e-13 | 64.3 |
Msa0155730 | MtrunA17_Chr3g0111371 | 34.351 | 131 | 57 | 3 | 12 | 113 | 5 | 135 | 5.13e-13 | 61.2 |
Msa0155730 | MtrunA17_Chr1g0200601 | 34.266 | 143 | 64 | 4 | 1 | 113 | 324 | 466 | 6.36e-13 | 63.5 |
Msa0155730 | MtrunA17_Chr0c02g0489761 | 29.655 | 145 | 69 | 2 | 1 | 113 | 372 | 515 | 6.75e-13 | 63.5 |
Msa0155730 | MtrunA17_Chr3g0098951 | 27.922 | 154 | 71 | 2 | 1 | 115 | 377 | 529 | 1.01e-12 | 63.2 |
Msa0155730 | MtrunA17_Chr3g0100501 | 36.842 | 114 | 46 | 3 | 1 | 111 | 41 | 131 | 1.60e-12 | 60.1 |
Msa0155730 | MtrunA17_Chr7g0242561 | 28.378 | 148 | 72 | 2 | 1 | 115 | 350 | 496 | 2.70e-12 | 62.0 |
Msa0155730 | MtrunA17_Chr3g0100461 | 50.000 | 56 | 28 | 0 | 20 | 75 | 53 | 108 | 4.09e-12 | 58.2 |
Msa0155730 | MtrunA17_Chr8g0373691 | 38.272 | 81 | 49 | 1 | 13 | 93 | 54 | 133 | 4.61e-12 | 59.7 |
Msa0155730 | MtrunA17_Chr5g0441691 | 28.276 | 145 | 71 | 2 | 1 | 113 | 362 | 505 | 6.78e-12 | 60.8 |
Msa0155730 | MtrunA17_Chr3g0131181 | 28.472 | 144 | 71 | 2 | 1 | 113 | 323 | 465 | 9.15e-12 | 60.5 |
Msa0155730 | MtrunA17_Chr8g0385341 | 29.167 | 144 | 70 | 2 | 1 | 113 | 324 | 466 | 1.13e-11 | 60.1 |
Msa0155730 | MtrunA17_Chr1g0157131 | 27.586 | 145 | 72 | 2 | 1 | 113 | 368 | 511 | 2.66e-11 | 58.9 |
Msa0155730 | MtrunA17_Chr4g0057641 | 37.168 | 113 | 67 | 2 | 1 | 113 | 31 | 139 | 2.78e-11 | 56.6 |
Msa0155730 | MtrunA17_Chr5g0448721 | 27.083 | 144 | 73 | 2 | 1 | 113 | 390 | 532 | 3.11e-11 | 58.9 |
Msa0155730 | MtrunA17_Chr3g0121191 | 41.176 | 68 | 40 | 0 | 6 | 73 | 150 | 217 | 3.96e-11 | 57.8 |
Msa0155730 | MtrunA17_Chr7g0267751 | 28.472 | 144 | 71 | 2 | 1 | 113 | 429 | 571 | 5.19e-11 | 58.2 |
Msa0155730 | MtrunA17_Chr4g0064231 | 52.381 | 63 | 28 | 1 | 13 | 73 | 154 | 216 | 6.23e-11 | 57.4 |
Msa0155730 | MtrunA17_Chr7g0256171 | 30.714 | 140 | 56 | 2 | 12 | 113 | 5 | 141 | 6.88e-11 | 55.8 |
Msa0155730 | MtrunA17_Chr4g0057651 | 37.168 | 113 | 67 | 2 | 1 | 113 | 31 | 139 | 7.77e-11 | 55.5 |
Msa0155730 | MtrunA17_Chr4g0057661 | 37.168 | 113 | 67 | 2 | 1 | 113 | 31 | 139 | 7.94e-11 | 55.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0155730 | AT4G14640.1 | 62.069 | 145 | 22 | 1 | 5 | 116 | 6 | 150 | 4.75e-56 | 171 |
Msa0155730 | AT3G22930.1 | 61.644 | 146 | 23 | 1 | 5 | 117 | 28 | 173 | 1.19e-55 | 171 |
Msa0155730 | AT2G27030.3 | 59.459 | 148 | 27 | 1 | 1 | 115 | 1 | 148 | 5.78e-54 | 167 |
Msa0155730 | AT2G27030.3 | 46.269 | 67 | 36 | 0 | 12 | 78 | 85 | 151 | 1.59e-12 | 61.2 |
Msa0155730 | AT3G56800.1 | 59.459 | 148 | 27 | 1 | 1 | 115 | 1 | 148 | 1.25e-53 | 165 |
Msa0155730 | AT3G56800.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 2.16e-12 | 60.1 |
Msa0155730 | AT2G41110.1 | 59.459 | 148 | 27 | 1 | 1 | 115 | 1 | 148 | 1.25e-53 | 165 |
Msa0155730 | AT2G41110.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 2.16e-12 | 60.1 |
Msa0155730 | AT2G27030.1 | 59.459 | 148 | 27 | 1 | 1 | 115 | 1 | 148 | 1.25e-53 | 165 |
Msa0155730 | AT2G27030.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 2.16e-12 | 60.1 |
Msa0155730 | AT5G21274.1 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 1.90e-53 | 164 |
Msa0155730 | AT5G21274.1 | 46.154 | 65 | 35 | 0 | 12 | 76 | 85 | 149 | 4.84e-12 | 59.3 |
Msa0155730 | AT3G43810.1 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 2.47e-53 | 164 |
Msa0155730 | AT3G43810.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 1.86e-12 | 60.5 |
Msa0155730 | AT3G43810.2 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 3.94e-53 | 166 |
Msa0155730 | AT1G66410.1 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 5.94e-53 | 163 |
Msa0155730 | AT1G66410.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 6.99e-13 | 61.6 |
Msa0155730 | AT5G37780.1 | 58.784 | 148 | 28 | 1 | 1 | 115 | 1 | 148 | 5.94e-53 | 163 |
Msa0155730 | AT5G37780.1 | 47.692 | 65 | 34 | 0 | 12 | 76 | 85 | 149 | 6.99e-13 | 61.6 |
Msa0155730 | AT2G41110.2 | 55.000 | 160 | 27 | 2 | 1 | 115 | 1 | 160 | 5.08e-50 | 156 |
Msa0155730 | AT2G41110.2 | 47.692 | 65 | 34 | 0 | 12 | 76 | 97 | 161 | 3.03e-12 | 60.1 |
Msa0155730 | AT5G37780.2 | 53.374 | 163 | 28 | 2 | 1 | 115 | 1 | 163 | 1.62e-48 | 152 |
Msa0155730 | AT5G37780.2 | 47.692 | 65 | 34 | 0 | 12 | 76 | 100 | 164 | 1.30e-12 | 61.2 |
Msa0155730 | AT4G14640.3 | 70.192 | 104 | 28 | 1 | 5 | 108 | 6 | 106 | 3.14e-47 | 148 |
Msa0155730 | AT3G22930.2 | 69.159 | 107 | 30 | 1 | 5 | 111 | 28 | 131 | 3.59e-47 | 148 |
Msa0155730 | AT5G37780.3 | 50.289 | 173 | 27 | 2 | 1 | 114 | 1 | 173 | 5.92e-47 | 149 |
Msa0155730 | AT5G37780.3 | 47.692 | 65 | 34 | 0 | 12 | 76 | 111 | 175 | 1.59e-12 | 61.2 |
Msa0155730 | AT1G66410.2 | 55.063 | 158 | 28 | 2 | 1 | 115 | 1 | 158 | 1.81e-44 | 142 |
Msa0155730 | AT1G66410.2 | 47.692 | 65 | 34 | 0 | 12 | 76 | 95 | 159 | 1.24e-12 | 60.8 |
Msa0155730 | AT4G14640.2 | 58.871 | 124 | 18 | 1 | 26 | 116 | 9 | 132 | 6.00e-43 | 137 |
Msa0155730 | AT4G14640.2 | 45.161 | 62 | 34 | 0 | 12 | 73 | 68 | 129 | 6.91e-12 | 58.5 |
Msa0155730 | AT5G37780.4 | 56.911 | 123 | 20 | 1 | 26 | 115 | 13 | 135 | 1.90e-40 | 131 |
Msa0155730 | AT5G37780.4 | 47.692 | 65 | 34 | 0 | 12 | 76 | 72 | 136 | 9.77e-13 | 60.8 |
Msa0155730 | AT1G66410.4 | 55.357 | 112 | 17 | 1 | 37 | 115 | 1 | 112 | 3.45e-34 | 114 |
Msa0155730 | AT1G66410.4 | 47.692 | 65 | 34 | 0 | 12 | 76 | 49 | 113 | 2.06e-13 | 62.0 |
Msa0155730 | AT1G66410.3 | 55.357 | 112 | 17 | 1 | 37 | 115 | 1 | 112 | 3.45e-34 | 114 |
Msa0155730 | AT1G66410.3 | 47.692 | 65 | 34 | 0 | 12 | 76 | 49 | 113 | 2.06e-13 | 62.0 |
Msa0155730 | AT3G43810.4 | 54.464 | 112 | 18 | 1 | 37 | 115 | 1 | 112 | 7.42e-34 | 114 |
Msa0155730 | AT3G43810.4 | 47.692 | 65 | 34 | 0 | 12 | 76 | 49 | 113 | 5.91e-13 | 60.8 |
Msa0155730 | AT3G43810.3 | 54.464 | 112 | 18 | 1 | 37 | 115 | 1 | 112 | 7.42e-34 | 114 |
Msa0155730 | AT3G43810.3 | 47.692 | 65 | 34 | 0 | 12 | 76 | 49 | 113 | 5.91e-13 | 60.8 |
Msa0155730 | AT2G41090.1 | 40.816 | 147 | 51 | 2 | 1 | 114 | 1 | 144 | 1.45e-28 | 102 |
Msa0155730 | AT3G51920.1 | 38.514 | 148 | 58 | 1 | 1 | 115 | 1 | 148 | 5.08e-28 | 100 |
Msa0155730 | AT2G41100.5 | 50.962 | 104 | 44 | 2 | 1 | 104 | 1 | 97 | 5.74e-28 | 100 |
Msa0155730 | AT2G41100.7 | 41.104 | 163 | 46 | 3 | 1 | 113 | 55 | 217 | 8.37e-27 | 100 |
Msa0155730 | AT2G41100.7 | 51.000 | 100 | 42 | 2 | 5 | 104 | 149 | 241 | 3.90e-25 | 96.3 |
Msa0155730 | AT2G41100.7 | 34.694 | 98 | 45 | 3 | 36 | 117 | 1 | 95 | 7.50e-11 | 57.8 |
Msa0155730 | AT2G41100.6 | 41.104 | 163 | 46 | 3 | 1 | 113 | 55 | 217 | 8.37e-27 | 100 |
Msa0155730 | AT2G41100.6 | 51.000 | 100 | 42 | 2 | 5 | 104 | 149 | 241 | 3.90e-25 | 96.3 |
Msa0155730 | AT2G41100.6 | 34.694 | 98 | 45 | 3 | 36 | 117 | 1 | 95 | 7.50e-11 | 57.8 |
Msa0155730 | AT2G41100.3 | 41.104 | 163 | 46 | 3 | 1 | 113 | 55 | 217 | 8.37e-27 | 100 |
Msa0155730 | AT2G41100.3 | 51.000 | 100 | 42 | 2 | 5 | 104 | 149 | 241 | 3.90e-25 | 96.3 |
Msa0155730 | AT2G41100.3 | 34.694 | 98 | 45 | 3 | 36 | 117 | 1 | 95 | 7.50e-11 | 57.8 |
Msa0155730 | AT2G41100.4 | 41.104 | 163 | 46 | 3 | 1 | 113 | 90 | 252 | 1.46e-26 | 100 |
Msa0155730 | AT2G41100.4 | 41.353 | 133 | 59 | 3 | 1 | 117 | 1 | 130 | 3.13e-26 | 99.8 |
Msa0155730 | AT2G41100.4 | 51.000 | 100 | 42 | 2 | 5 | 104 | 184 | 276 | 6.83e-25 | 96.3 |
Msa0155730 | AT2G41100.1 | 41.104 | 163 | 46 | 3 | 1 | 113 | 90 | 252 | 1.46e-26 | 100 |
Msa0155730 | AT2G41100.1 | 41.353 | 133 | 59 | 3 | 1 | 117 | 1 | 130 | 3.13e-26 | 99.8 |
Msa0155730 | AT2G41100.1 | 51.000 | 100 | 42 | 2 | 5 | 104 | 184 | 276 | 6.83e-25 | 96.3 |
Msa0155730 | AT2G41100.2 | 51.000 | 100 | 42 | 2 | 5 | 104 | 59 | 151 | 4.67e-26 | 96.7 |
Msa0155730 | AT2G41100.2 | 36.000 | 125 | 30 | 3 | 39 | 113 | 3 | 127 | 1.31e-11 | 58.9 |
Msa0155730 | AT3G50360.1 | 38.519 | 135 | 50 | 1 | 12 | 113 | 27 | 161 | 5.60e-22 | 85.5 |
Msa0155730 | AT1G62820.1 | 39.823 | 113 | 63 | 2 | 5 | 117 | 6 | 113 | 2.77e-20 | 80.5 |
Msa0155730 | AT1G12310.1 | 38.938 | 113 | 64 | 2 | 5 | 117 | 6 | 113 | 7.73e-20 | 79.3 |
Msa0155730 | AT1G24620.1 | 36.620 | 142 | 56 | 2 | 9 | 117 | 34 | 174 | 3.04e-18 | 76.3 |
Msa0155730 | AT1G24620.1 | 44.776 | 67 | 37 | 0 | 8 | 74 | 106 | 172 | 4.40e-11 | 57.4 |
Msa0155730 | AT1G66400.1 | 36.879 | 141 | 54 | 2 | 12 | 117 | 15 | 155 | 3.09e-18 | 75.5 |
Msa0155730 | AT1G66400.1 | 41.176 | 68 | 40 | 0 | 6 | 73 | 84 | 151 | 9.93e-12 | 58.5 |
Msa0155730 | AT4G37010.2 | 36.296 | 135 | 53 | 1 | 12 | 113 | 31 | 165 | 4.10e-18 | 75.5 |
Msa0155730 | AT4G37010.1 | 36.296 | 135 | 53 | 1 | 12 | 113 | 27 | 161 | 4.42e-18 | 75.5 |
Msa0155730 | AT1G32250.1 | 31.081 | 148 | 63 | 3 | 5 | 113 | 9 | 156 | 9.37e-18 | 74.3 |
Msa0155730 | AT5G37770.1 | 36.364 | 143 | 54 | 2 | 12 | 117 | 17 | 159 | 5.37e-17 | 72.4 |
Msa0155730 | AT5G37770.2 | 36.364 | 143 | 54 | 2 | 12 | 117 | 17 | 159 | 5.37e-17 | 72.4 |
Msa0155730 | AT1G18530.1 | 30.282 | 142 | 64 | 1 | 7 | 113 | 2 | 143 | 6.65e-16 | 69.3 |
Msa0155730 | AT1G18530.1 | 43.836 | 73 | 38 | 1 | 4 | 76 | 77 | 146 | 5.50e-13 | 62.0 |
Msa0155730 | AT4G04720.2 | 32.414 | 145 | 65 | 2 | 1 | 113 | 373 | 516 | 7.12e-16 | 72.4 |
Msa0155730 | AT4G04720.1 | 32.414 | 145 | 65 | 2 | 1 | 113 | 373 | 516 | 7.12e-16 | 72.4 |
Msa0155730 | AT1G05990.1 | 35.252 | 139 | 54 | 2 | 11 | 113 | 4 | 142 | 2.43e-15 | 67.8 |
Msa0155730 | AT3G10190.1 | 35.593 | 118 | 71 | 3 | 1 | 117 | 59 | 172 | 3.55e-15 | 68.6 |
Msa0155730 | AT3G10190.1 | 40.909 | 110 | 57 | 3 | 5 | 113 | 103 | 205 | 5.76e-11 | 57.4 |
Msa0155730 | AT4G21940.1 | 30.612 | 147 | 69 | 2 | 1 | 115 | 395 | 540 | 5.95e-15 | 70.1 |
Msa0155730 | AT4G21940.2 | 30.612 | 147 | 69 | 2 | 1 | 115 | 395 | 540 | 6.32e-15 | 69.7 |
Msa0155730 | AT2G43290.1 | 32.394 | 142 | 56 | 2 | 12 | 113 | 65 | 206 | 7.00e-15 | 68.2 |
Msa0155730 | AT1G73630.1 | 33.333 | 138 | 55 | 2 | 11 | 115 | 19 | 152 | 9.34e-15 | 66.6 |
Msa0155730 | AT3G25600.1 | 29.730 | 148 | 69 | 2 | 1 | 113 | 1 | 148 | 1.20e-14 | 66.2 |
Msa0155730 | AT3G25600.1 | 41.096 | 73 | 40 | 1 | 4 | 76 | 82 | 151 | 1.17e-12 | 61.2 |
Msa0155730 | AT4G23650.1 | 29.655 | 145 | 69 | 2 | 1 | 113 | 372 | 515 | 1.75e-14 | 68.6 |
Msa0155730 | AT3G50770.1 | 32.143 | 140 | 57 | 2 | 12 | 113 | 64 | 203 | 2.14e-14 | 66.6 |
Msa0155730 | AT5G23580.1 | 35.664 | 143 | 62 | 4 | 1 | 113 | 316 | 458 | 4.11e-14 | 67.4 |
Msa0155730 | AT5G12180.1 | 31.034 | 145 | 67 | 2 | 1 | 113 | 367 | 510 | 6.32e-14 | 67.0 |
Msa0155730 | AT4G04700.1 | 31.973 | 147 | 67 | 2 | 1 | 115 | 325 | 470 | 6.48e-14 | 67.0 |
Msa0155730 | AT5G19360.1 | 31.724 | 145 | 66 | 2 | 1 | 113 | 362 | 505 | 9.21e-14 | 66.6 |
Msa0155730 | AT1G18210.2 | 32.593 | 135 | 54 | 2 | 12 | 113 | 23 | 153 | 1.34e-13 | 63.9 |
Msa0155730 | AT1G18210.1 | 32.593 | 135 | 54 | 2 | 12 | 113 | 23 | 153 | 1.34e-13 | 63.9 |
Msa0155730 | AT4G09570.1 | 32.192 | 146 | 63 | 3 | 1 | 113 | 319 | 461 | 1.88e-13 | 65.5 |
Msa0155730 | AT4G04695.1 | 29.932 | 147 | 70 | 2 | 1 | 115 | 325 | 470 | 2.31e-13 | 65.5 |
Msa0155730 | AT1G76040.1 | 29.655 | 145 | 69 | 2 | 1 | 113 | 167 | 310 | 2.68e-13 | 64.7 |
Msa0155730 | AT1G76040.4 | 29.655 | 145 | 69 | 2 | 1 | 113 | 167 | 310 | 2.68e-13 | 64.7 |
Msa0155730 | AT4G04740.4 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G04740.6 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G04740.5 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G04740.3 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G04740.1 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G04740.7 | 30.496 | 141 | 65 | 2 | 5 | 113 | 366 | 505 | 2.70e-13 | 65.1 |
Msa0155730 | AT4G03290.1 | 49.231 | 65 | 31 | 1 | 13 | 75 | 82 | 146 | 3.47e-13 | 62.4 |
Msa0155730 | AT4G03290.1 | 31.206 | 141 | 59 | 2 | 11 | 113 | 4 | 144 | 2.98e-11 | 57.4 |
Msa0155730 | AT1G76040.2 | 29.655 | 145 | 69 | 2 | 1 | 113 | 405 | 548 | 3.48e-13 | 64.7 |
Msa0155730 | AT2G15680.1 | 28.472 | 144 | 68 | 2 | 5 | 115 | 43 | 184 | 3.93e-13 | 62.8 |
Msa0155730 | AT3G51850.1 | 27.703 | 148 | 73 | 2 | 1 | 115 | 348 | 494 | 4.11e-13 | 64.7 |
Msa0155730 | AT1G35670.1 | 31.250 | 144 | 67 | 2 | 1 | 113 | 320 | 462 | 1.13e-12 | 63.5 |
Msa0155730 | AT3G20410.2 | 26.531 | 147 | 75 | 2 | 1 | 115 | 385 | 530 | 1.75e-12 | 62.8 |
Msa0155730 | AT3G20410.1 | 26.531 | 147 | 75 | 2 | 1 | 115 | 385 | 530 | 1.75e-12 | 62.8 |
Msa0155730 | AT1G61950.1 | 26.531 | 147 | 75 | 2 | 1 | 115 | 393 | 538 | 1.95e-12 | 62.8 |
Msa0155730 | AT3G03000.1 | 31.034 | 145 | 66 | 2 | 5 | 115 | 13 | 157 | 2.02e-12 | 60.5 |
Msa0155730 | AT3G59440.1 | 35.514 | 107 | 65 | 2 | 11 | 117 | 50 | 152 | 3.80e-12 | 60.5 |
Msa0155730 | AT3G59440.1 | 45.946 | 74 | 38 | 1 | 2 | 73 | 113 | 186 | 1.04e-11 | 59.3 |
Msa0155730 | AT1G50700.1 | 25.170 | 147 | 77 | 2 | 1 | 115 | 367 | 512 | 9.81e-12 | 60.8 |
Msa0155730 | AT4G21940.3 | 36.264 | 91 | 57 | 1 | 1 | 91 | 395 | 484 | 9.83e-12 | 60.8 |
Msa0155730 | AT4G04710.2 | 34.259 | 108 | 67 | 2 | 1 | 108 | 326 | 429 | 1.72e-11 | 60.1 |
Msa0155730 | AT3G51850.2 | 32.110 | 109 | 70 | 2 | 1 | 109 | 348 | 452 | 1.85e-11 | 60.1 |
Msa0155730 | AT4G38230.2 | 27.972 | 143 | 73 | 3 | 1 | 113 | 348 | 490 | 1.86e-11 | 60.1 |
Msa0155730 | AT4G04710.3 | 34.259 | 108 | 67 | 2 | 1 | 108 | 312 | 415 | 1.91e-11 | 59.7 |
Msa0155730 | AT4G04710.1 | 34.259 | 108 | 67 | 2 | 1 | 108 | 339 | 442 | 2.02e-11 | 59.7 |
Msa0155730 | AT4G38230.4 | 27.972 | 143 | 73 | 3 | 1 | 113 | 318 | 460 | 2.26e-11 | 59.7 |
Msa0155730 | AT4G38230.3 | 27.972 | 143 | 73 | 3 | 1 | 113 | 318 | 460 | 2.26e-11 | 59.7 |
Msa0155730 | AT4G04740.2 | 31.858 | 113 | 73 | 2 | 5 | 117 | 366 | 474 | 5.81e-11 | 58.5 |
Msa0155730 | AT5G17470.1 | 32.110 | 109 | 69 | 2 | 11 | 117 | 1 | 106 | 6.83e-11 | 56.2 |
Msa0155730 | AT5G17470.1 | 42.647 | 68 | 39 | 0 | 7 | 74 | 72 | 139 | 8.53e-11 | 55.8 |
Msa0155730 | AT1G50700.3 | 31.068 | 103 | 67 | 2 | 1 | 103 | 367 | 465 | 7.29e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGAGTTCTTGAACTTAA+TGG | 0.156792 | 1_4:-21296224 | Msa0155730:CDS |
CTACTATTACTTAGTATATA+AGG | 0.182362 | 1_4:+21296831 | None:intergenic |
CAACCTCGTTTATCATTTCT+TGG | 0.231199 | 1_4:+21296275 | None:intergenic |
CTTCTTTGATCTCAACAATT+TGG | 0.239416 | 1_4:+21296630 | None:intergenic |
GATGATTAAAGAAGCAGATT+TGG | 0.325770 | 1_4:-21294700 | Msa0155730:CDS |
CTTGGAGCTCTTCCTCTGTT+GGG | 0.341743 | 1_4:+21296293 | None:intergenic |
GCATATACAAGCATATAAAA+TGG | 0.357393 | 1_4:-21296672 | Msa0155730:exon |
TCTTGGAGCTCTTCCTCTGT+TGG | 0.366378 | 1_4:+21296292 | None:intergenic |
TGCAACTGTAATTAGGTCAT+TGG | 0.376466 | 1_4:-21296323 | Msa0155730:CDS |
AGATCTCAAAGAGGCTTTCA+AGG | 0.399505 | 1_4:-21296077 | Msa0155730:intron |
TACTATTACTTAGTATATAA+GGG | 0.400443 | 1_4:+21296832 | None:intergenic |
AAGAACTTGCAACTGTAATT+AGG | 0.411307 | 1_4:-21296330 | Msa0155730:CDS |
GAGGTTGATGCAGATGGAAA+TGG | 0.427391 | 1_4:-21296259 | Msa0155730:CDS |
CAAGAACTCAACAAATTCAA+TGG | 0.441259 | 1_4:+21296234 | None:intergenic |
AATAGTAGTAAATTACATAT+AGG | 0.457280 | 1_4:-21296816 | Msa0155730:five_prime_UTR |
ATCTTTGTCAAACAAGCAAA+AGG | 0.476240 | 1_4:+21296607 | None:intergenic |
GGATAGTTTATTTCATCCAA+TGG | 0.496741 | 1_4:+21294629 | None:intergenic |
TTTCAAACTTCAAAGAGTGT+TGG | 0.497299 | 1_4:-21296725 | Msa0155730:five_prime_UTR |
GAGTATAGCTCAATCTTAGC+TGG | 0.502101 | 1_4:+21296793 | None:intergenic |
GTTAAGATGATGATGACCAT+TGG | 0.525117 | 1_4:-21294645 | Msa0155730:CDS |
GAAGCAGATTTGGACGGTGA+TGG | 0.535179 | 1_4:-21294690 | Msa0155730:CDS |
ATAAACGAGGTTGATGCAGA+TGG | 0.548616 | 1_4:-21296265 | Msa0155730:CDS |
TTTAATAGGTTGCATTACTG+TGG | 0.584530 | 1_4:-21296353 | Msa0155730:intron |
ATTAAAGAAGCAGATTTGGA+CGG | 0.618310 | 1_4:-21294696 | Msa0155730:CDS |
TTGTTTGACAAAGATGGAGA+TGG | 0.622259 | 1_4:-21296599 | Msa0155730:intron |
TGCAGATGAAGATCTCAAAG+AGG | 0.636781 | 1_4:-21296086 | Msa0155730:CDS |
ATTGGATCAAAACCCAACAG+AGG | 0.719116 | 1_4:-21296305 | Msa0155730:CDS |
GCTCCAAGAAATGATAAACG+AGG | 0.724641 | 1_4:-21296278 | Msa0155730:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATATTTCATAGTTTTAA+TGG | + | chr1_4:21296085-21296104 | None:intergenic | 10.0% |
!! | CATAAATACATAATTTAATA+TGG | + | chr1_4:21296692-21296711 | None:intergenic | 10.0% |
!!! | AAAATATTTCATAGTTTTAA+TGG | + | chr1_4:21296085-21296104 | None:intergenic | 10.0% |
!! | CATAAATACATAATTTAATA+TGG | + | chr1_4:21296692-21296711 | None:intergenic | 10.0% |
!! | TACTATTACTTAGTATATAA+GGG | + | chr1_4:21294649-21294668 | None:intergenic | 15.0% |
!! | AATAGTAGTAAATTACATAT+AGG | - | chr1_4:21294662-21294681 | Msa0155730:CDS | 15.0% |
!! | TATATAATTGAAGTGAAATA+TGG | + | chr1_4:21294940-21294959 | None:intergenic | 15.0% |
!!! | CAATTTTATCATATAGTATA+AGG | + | chr1_4:21295039-21295058 | None:intergenic | 15.0% |
!! | CTTTATGATTAATCTTTAAT+AGG | - | chr1_4:21295111-21295130 | Msa0155730:intron | 15.0% |
!!! | AATAATTACTTTCATTTTCT+TGG | + | chr1_4:21295280-21295299 | None:intergenic | 15.0% |
!!! | ATTCTTTAAAATGAAACTTT+TGG | - | chr1_4:21295535-21295554 | Msa0155730:intron | 15.0% |
!! | TTTCTTTGTATATAGAAAAA+AGG | - | chr1_4:21295747-21295766 | Msa0155730:intron | 15.0% |
!!! | TATTTATTTTTAATGAAGGA+GGG | + | chr1_4:21295825-21295844 | None:intergenic | 15.0% |
!!! | TTATTTATTTTTAATGAAGG+AGG | + | chr1_4:21295826-21295845 | None:intergenic | 15.0% |
!!! | AAGTTATTTTATAACTAATG+GGG | + | chr1_4:21295863-21295882 | None:intergenic | 15.0% |
!!! | GAAGTTATTTTATAACTAAT+GGG | + | chr1_4:21295864-21295883 | None:intergenic | 15.0% |
!!! | AGAAGTTATTTTATAACTAA+TGG | + | chr1_4:21295865-21295884 | None:intergenic | 15.0% |
!!! | TAAAATAACTTCTTTGTTAT+AGG | - | chr1_4:21295872-21295891 | Msa0155730:intron | 15.0% |
!! | TACTATTACTTAGTATATAA+GGG | + | chr1_4:21294649-21294668 | None:intergenic | 15.0% |
!! | AATAGTAGTAAATTACATAT+AGG | - | chr1_4:21294662-21294681 | Msa0155730:CDS | 15.0% |
!! | TATATAATTGAAGTGAAATA+TGG | + | chr1_4:21294940-21294959 | None:intergenic | 15.0% |
!!! | CAATTTTATCATATAGTATA+AGG | + | chr1_4:21295039-21295058 | None:intergenic | 15.0% |
!! | CTTTATGATTAATCTTTAAT+AGG | - | chr1_4:21295111-21295130 | Msa0155730:intron | 15.0% |
!!! | AATAATTACTTTCATTTTCT+TGG | + | chr1_4:21295280-21295299 | None:intergenic | 15.0% |
!!! | ATTCTTTAAAATGAAACTTT+TGG | - | chr1_4:21295535-21295554 | Msa0155730:intron | 15.0% |
!! | TTTCTTTGTATATAGAAAAA+AGG | - | chr1_4:21295747-21295766 | Msa0155730:intron | 15.0% |
!!! | TATTTATTTTTAATGAAGGA+GGG | + | chr1_4:21295825-21295844 | None:intergenic | 15.0% |
!!! | TTATTTATTTTTAATGAAGG+AGG | + | chr1_4:21295826-21295845 | None:intergenic | 15.0% |
!!! | AAGTTATTTTATAACTAATG+GGG | + | chr1_4:21295863-21295882 | None:intergenic | 15.0% |
!!! | GAAGTTATTTTATAACTAAT+GGG | + | chr1_4:21295864-21295883 | None:intergenic | 15.0% |
!!! | AGAAGTTATTTTATAACTAA+TGG | + | chr1_4:21295865-21295884 | None:intergenic | 15.0% |
!!! | TAAAATAACTTCTTTGTTAT+AGG | - | chr1_4:21295872-21295891 | Msa0155730:intron | 15.0% |
!! | CTACTATTACTTAGTATATA+AGG | + | chr1_4:21294650-21294669 | None:intergenic | 20.0% |
!! | CATTATTGTAAGAAATGAAA+GGG | + | chr1_4:21295307-21295326 | None:intergenic | 20.0% |
!! | ACATTATTGTAAGAAATGAA+AGG | + | chr1_4:21295308-21295327 | None:intergenic | 20.0% |
!!! | GTTTTTGATAAAGATCAAAA+TGG | - | chr1_4:21295423-21295442 | Msa0155730:intron | 20.0% |
!!! | TATATAAATATTTTCCTCTC+CGG | - | chr1_4:21295466-21295485 | Msa0155730:intron | 20.0% |
!! | AATCACTGTATAATTGTAAT+GGG | + | chr1_4:21295708-21295727 | None:intergenic | 20.0% |
!! | TAATCACTGTATAATTGTAA+TGG | + | chr1_4:21295709-21295728 | None:intergenic | 20.0% |
!! | CAATTATACAGTGATTAAAT+TGG | - | chr1_4:21295712-21295731 | Msa0155730:intron | 20.0% |
!! | AGATACATTATGATTATGAT+AGG | - | chr1_4:21295789-21295808 | Msa0155730:intron | 20.0% |
!!! | AGTTATTTTATAACTAATGG+GGG | + | chr1_4:21295862-21295881 | None:intergenic | 20.0% |
!! | ATGTGTGTCTATATATTAAA+TGG | - | chr1_4:21296470-21296489 | Msa0155730:intron | 20.0% |
!! | TGTGTGTCTATATATTAAAT+GGG | - | chr1_4:21296471-21296490 | Msa0155730:intron | 20.0% |
!! | CTACTATTACTTAGTATATA+AGG | + | chr1_4:21294650-21294669 | None:intergenic | 20.0% |
!! | CATTATTGTAAGAAATGAAA+GGG | + | chr1_4:21295307-21295326 | None:intergenic | 20.0% |
!! | ACATTATTGTAAGAAATGAA+AGG | + | chr1_4:21295308-21295327 | None:intergenic | 20.0% |
!!! | GTTTTTGATAAAGATCAAAA+TGG | - | chr1_4:21295423-21295442 | Msa0155730:intron | 20.0% |
!!! | TATATAAATATTTTCCTCTC+CGG | - | chr1_4:21295466-21295485 | Msa0155730:intron | 20.0% |
!! | AATCACTGTATAATTGTAAT+GGG | + | chr1_4:21295708-21295727 | None:intergenic | 20.0% |
!! | TAATCACTGTATAATTGTAA+TGG | + | chr1_4:21295709-21295728 | None:intergenic | 20.0% |
!! | CAATTATACAGTGATTAAAT+TGG | - | chr1_4:21295712-21295731 | Msa0155730:intron | 20.0% |
!! | AGATACATTATGATTATGAT+AGG | - | chr1_4:21295789-21295808 | Msa0155730:intron | 20.0% |
!!! | AGTTATTTTATAACTAATGG+GGG | + | chr1_4:21295862-21295881 | None:intergenic | 20.0% |
!! | ATGTGTGTCTATATATTAAA+TGG | - | chr1_4:21296470-21296489 | Msa0155730:intron | 20.0% |
!! | TGTGTGTCTATATATTAAAT+GGG | - | chr1_4:21296471-21296490 | Msa0155730:intron | 20.0% |
! | GCATATACAAGCATATAAAA+TGG | - | chr1_4:21294806-21294825 | Msa0155730:intron | 25.0% |
! | ATATTGTCAACAATCAAAGA+AGG | + | chr1_4:21294973-21294992 | None:intergenic | 25.0% |
! | ATATTTATATACCTCACTAG+CGG | + | chr1_4:21295457-21295476 | None:intergenic | 25.0% |
! | TAATCTAAACATGCATTAAC+CGG | + | chr1_4:21295488-21295507 | None:intergenic | 25.0% |
!! | CTAAAAAAAAGTGTAATGGA+AGG | + | chr1_4:21295676-21295695 | None:intergenic | 25.0% |
!!! | CTTCCATTACACTTTTTTTT+AGG | - | chr1_4:21295674-21295693 | Msa0155730:intron | 25.0% |
!! | TCACCTAAAAAAAAGTGTAA+TGG | + | chr1_4:21295680-21295699 | None:intergenic | 25.0% |
!! | TAACTTCTTTGTTATAGGAT+TGG | - | chr1_4:21295877-21295896 | Msa0155730:intron | 25.0% |
! | TTTATTGCATGTACAAAAAC+AGG | - | chr1_4:21296169-21296188 | Msa0155730:intron | 25.0% |
!! | CTATTATTATTCATCGATTG+CGG | + | chr1_4:21296344-21296363 | None:intergenic | 25.0% |
! | TGAAAAATTAACTGATGAAG+AGG | - | chr1_4:21296748-21296767 | Msa0155730:five_prime_UTR | 25.0% |
! | GCATATACAAGCATATAAAA+TGG | - | chr1_4:21294806-21294825 | Msa0155730:intron | 25.0% |
! | ATATTGTCAACAATCAAAGA+AGG | + | chr1_4:21294973-21294992 | None:intergenic | 25.0% |
! | ATATTTATATACCTCACTAG+CGG | + | chr1_4:21295457-21295476 | None:intergenic | 25.0% |
! | TAATCTAAACATGCATTAAC+CGG | + | chr1_4:21295488-21295507 | None:intergenic | 25.0% |
!! | CTAAAAAAAAGTGTAATGGA+AGG | + | chr1_4:21295676-21295695 | None:intergenic | 25.0% |
!!! | CTTCCATTACACTTTTTTTT+AGG | - | chr1_4:21295674-21295693 | Msa0155730:intron | 25.0% |
!! | TCACCTAAAAAAAAGTGTAA+TGG | + | chr1_4:21295680-21295699 | None:intergenic | 25.0% |
!! | TAACTTCTTTGTTATAGGAT+TGG | - | chr1_4:21295877-21295896 | Msa0155730:intron | 25.0% |
! | TTTATTGCATGTACAAAAAC+AGG | - | chr1_4:21296169-21296188 | Msa0155730:intron | 25.0% |
!! | CTATTATTATTCATCGATTG+CGG | + | chr1_4:21296344-21296363 | None:intergenic | 25.0% |
! | TGAAAAATTAACTGATGAAG+AGG | - | chr1_4:21296748-21296767 | Msa0155730:five_prime_UTR | 25.0% |
! | TTTCAAACTTCAAAGAGTGT+TGG | - | chr1_4:21294753-21294772 | Msa0155730:intron | 30.0% |
CTTCTTTGATCTCAACAATT+TGG | + | chr1_4:21294851-21294870 | None:intergenic | 30.0% | |
ATCTTTGTCAAACAAGCAAA+AGG | + | chr1_4:21294874-21294893 | None:intergenic | 30.0% | |
! | TTTTGCTTGTTTGACAAAGA+TGG | - | chr1_4:21294873-21294892 | Msa0155730:intron | 30.0% |
CACATACACACATAATAAGT+TGG | - | chr1_4:21295063-21295082 | Msa0155730:intron | 30.0% | |
TTTAATAGGTTGCATTACTG+TGG | - | chr1_4:21295125-21295144 | Msa0155730:intron | 30.0% | |
AAGAACTTGCAACTGTAATT+AGG | - | chr1_4:21295148-21295167 | Msa0155730:intron | 30.0% | |
CAAGAACTCAACAAATTCAA+TGG | + | chr1_4:21295247-21295266 | None:intergenic | 30.0% | |
TGTTGAGTTCTTGAACTTAA+TGG | - | chr1_4:21295254-21295273 | Msa0155730:intron | 30.0% | |
CAACGAGTTTCACATAATTA+GGG | + | chr1_4:21295577-21295596 | None:intergenic | 30.0% | |
ACAACGAGTTTCACATAATT+AGG | + | chr1_4:21295578-21295597 | None:intergenic | 30.0% | |
TATGATTATGATAGGCTTCA+TGG | - | chr1_4:21295797-21295816 | Msa0155730:intron | 30.0% | |
ATGCACATTAATTTCACACA+TGG | - | chr1_4:21296250-21296269 | Msa0155730:CDS | 30.0% | |
ACACCTTCATAAAAAGTAGT+TGG | - | chr1_4:21296506-21296525 | Msa0155730:intron | 30.0% | |
!!! | ACACCAACTACTTTTTATGA+AGG | + | chr1_4:21296601-21296620 | None:intergenic | 30.0% |
ATAAAAGACACCTTCACAAA+AGG | - | chr1_4:21296650-21296669 | Msa0155730:CDS | 30.0% | |
AGACACGTTATGATCAATTT+AGG | - | chr1_4:21296725-21296744 | Msa0155730:five_prime_UTR | 30.0% | |
GATGATTAAAGAAGCAGATT+TGG | - | chr1_4:21296778-21296797 | Msa0155730:five_prime_UTR | 30.0% | |
ATTAAAGAAGCAGATTTGGA+CGG | - | chr1_4:21296782-21296801 | Msa0155730:five_prime_UTR | 30.0% | |
! | TTTCAAACTTCAAAGAGTGT+TGG | - | chr1_4:21294753-21294772 | Msa0155730:intron | 30.0% |
CTTCTTTGATCTCAACAATT+TGG | + | chr1_4:21294851-21294870 | None:intergenic | 30.0% | |
ATCTTTGTCAAACAAGCAAA+AGG | + | chr1_4:21294874-21294893 | None:intergenic | 30.0% | |
! | TTTTGCTTGTTTGACAAAGA+TGG | - | chr1_4:21294873-21294892 | Msa0155730:intron | 30.0% |
CACATACACACATAATAAGT+TGG | - | chr1_4:21295063-21295082 | Msa0155730:intron | 30.0% | |
TTTAATAGGTTGCATTACTG+TGG | - | chr1_4:21295125-21295144 | Msa0155730:intron | 30.0% | |
AAGAACTTGCAACTGTAATT+AGG | - | chr1_4:21295148-21295167 | Msa0155730:intron | 30.0% | |
CAAGAACTCAACAAATTCAA+TGG | + | chr1_4:21295247-21295266 | None:intergenic | 30.0% | |
TGTTGAGTTCTTGAACTTAA+TGG | - | chr1_4:21295254-21295273 | Msa0155730:intron | 30.0% | |
CAACGAGTTTCACATAATTA+GGG | + | chr1_4:21295577-21295596 | None:intergenic | 30.0% | |
ACAACGAGTTTCACATAATT+AGG | + | chr1_4:21295578-21295597 | None:intergenic | 30.0% | |
TATGATTATGATAGGCTTCA+TGG | - | chr1_4:21295797-21295816 | Msa0155730:intron | 30.0% | |
ATGCACATTAATTTCACACA+TGG | - | chr1_4:21296250-21296269 | Msa0155730:CDS | 30.0% | |
ACACCTTCATAAAAAGTAGT+TGG | - | chr1_4:21296506-21296525 | Msa0155730:intron | 30.0% | |
!!! | ACACCAACTACTTTTTATGA+AGG | + | chr1_4:21296601-21296620 | None:intergenic | 30.0% |
ATAAAAGACACCTTCACAAA+AGG | - | chr1_4:21296650-21296669 | Msa0155730:CDS | 30.0% | |
AGACACGTTATGATCAATTT+AGG | - | chr1_4:21296725-21296744 | Msa0155730:five_prime_UTR | 30.0% | |
GATGATTAAAGAAGCAGATT+TGG | - | chr1_4:21296778-21296797 | Msa0155730:five_prime_UTR | 30.0% | |
ATTAAAGAAGCAGATTTGGA+CGG | - | chr1_4:21296782-21296801 | Msa0155730:five_prime_UTR | 30.0% | |
TTGTTTGACAAAGATGGAGA+TGG | - | chr1_4:21294879-21294898 | Msa0155730:intron | 35.0% | |
TGCAACTGTAATTAGGTCAT+TGG | - | chr1_4:21295155-21295174 | Msa0155730:intron | 35.0% | |
CAACCTCGTTTATCATTTCT+TGG | + | chr1_4:21295206-21295225 | None:intergenic | 35.0% | |
!!! | CTATTTTTTCCCCCTCATTT+AGG | - | chr1_4:21295362-21295381 | Msa0155730:intron | 35.0% |
TGCATCAGTTTCCTAAATGA+GGG | + | chr1_4:21295376-21295395 | None:intergenic | 35.0% | |
TTTCTTGAAGCATAGAGCTA+TGG | - | chr1_4:21296102-21296121 | Msa0155730:intron | 35.0% | |
ACACTTCTTCAATCAACTAG+AGG | - | chr1_4:21296300-21296319 | Msa0155730:CDS | 35.0% | |
! | ATTATTCATCGATTGCGGAA+AGG | + | chr1_4:21296339-21296358 | None:intergenic | 35.0% |
CACCTTCATAAAAAGTAGTG+TGG | - | chr1_4:21296507-21296526 | Msa0155730:intron | 35.0% | |
!!! | CACCACACTACTTTTTATGA+AGG | + | chr1_4:21296512-21296531 | None:intergenic | 35.0% |
! | TTTTATCAAGTCACACCTCA+AGG | - | chr1_4:21296534-21296553 | Msa0155730:intron | 35.0% |
AAAGTGAAAATCACACCTTG+AGG | + | chr1_4:21296552-21296571 | None:intergenic | 35.0% | |
! | ATAGAAGACACCTTTTGTGA+AGG | + | chr1_4:21296663-21296682 | None:intergenic | 35.0% |
! | GTTAAGATGATGATGACCAT+TGG | - | chr1_4:21296833-21296852 | Msa0155730:five_prime_UTR | 35.0% |
TTGTTTGACAAAGATGGAGA+TGG | - | chr1_4:21294879-21294898 | Msa0155730:intron | 35.0% | |
TGCAACTGTAATTAGGTCAT+TGG | - | chr1_4:21295155-21295174 | Msa0155730:intron | 35.0% | |
CAACCTCGTTTATCATTTCT+TGG | + | chr1_4:21295206-21295225 | None:intergenic | 35.0% | |
!!! | CTATTTTTTCCCCCTCATTT+AGG | - | chr1_4:21295362-21295381 | Msa0155730:intron | 35.0% |
TGCATCAGTTTCCTAAATGA+GGG | + | chr1_4:21295376-21295395 | None:intergenic | 35.0% | |
TTTCTTGAAGCATAGAGCTA+TGG | - | chr1_4:21296102-21296121 | Msa0155730:intron | 35.0% | |
ACACTTCTTCAATCAACTAG+AGG | - | chr1_4:21296300-21296319 | Msa0155730:CDS | 35.0% | |
! | ATTATTCATCGATTGCGGAA+AGG | + | chr1_4:21296339-21296358 | None:intergenic | 35.0% |
CACCTTCATAAAAAGTAGTG+TGG | - | chr1_4:21296507-21296526 | Msa0155730:intron | 35.0% | |
!!! | CACCACACTACTTTTTATGA+AGG | + | chr1_4:21296512-21296531 | None:intergenic | 35.0% |
! | TTTTATCAAGTCACACCTCA+AGG | - | chr1_4:21296534-21296553 | Msa0155730:intron | 35.0% |
AAAGTGAAAATCACACCTTG+AGG | + | chr1_4:21296552-21296571 | None:intergenic | 35.0% | |
! | ATAGAAGACACCTTTTGTGA+AGG | + | chr1_4:21296663-21296682 | None:intergenic | 35.0% |
! | GTTAAGATGATGATGACCAT+TGG | - | chr1_4:21296833-21296852 | Msa0155730:five_prime_UTR | 35.0% |
GAGTATAGCTCAATCTTAGC+TGG | + | chr1_4:21294688-21294707 | None:intergenic | 40.0% | |
ATTGGATCAAAACCCAACAG+AGG | - | chr1_4:21295173-21295192 | Msa0155730:intron | 40.0% | |
GCTCCAAGAAATGATAAACG+AGG | - | chr1_4:21295200-21295219 | Msa0155730:intron | 40.0% | |
!! | ATAAACGAGGTTGATGCAGA+TGG | - | chr1_4:21295213-21295232 | Msa0155730:intron | 40.0% |
CATCAGTTTCCTAAATGAGG+GGG | + | chr1_4:21295374-21295393 | None:intergenic | 40.0% | |
GCATCAGTTTCCTAAATGAG+GGG | + | chr1_4:21295375-21295394 | None:intergenic | 40.0% | |
CTGCATCAGTTTCCTAAATG+AGG | + | chr1_4:21295377-21295396 | None:intergenic | 40.0% | |
TGCAGATGAAGATCTCAAAG+AGG | - | chr1_4:21295392-21295411 | Msa0155730:intron | 40.0% | |
AGATCTCAAAGAGGCTTTCA+AGG | - | chr1_4:21295401-21295420 | Msa0155730:intron | 40.0% | |
TGGTTATATTTCCGCTAGTG+AGG | - | chr1_4:21295443-21295462 | Msa0155730:intron | 40.0% | |
TAAACATGCATTAACCGGAG+AGG | + | chr1_4:21295483-21295502 | None:intergenic | 40.0% | |
GAGTATAGCTCAATCTTAGC+TGG | + | chr1_4:21294688-21294707 | None:intergenic | 40.0% | |
ATTGGATCAAAACCCAACAG+AGG | - | chr1_4:21295173-21295192 | Msa0155730:intron | 40.0% | |
GCTCCAAGAAATGATAAACG+AGG | - | chr1_4:21295200-21295219 | Msa0155730:intron | 40.0% | |
!! | ATAAACGAGGTTGATGCAGA+TGG | - | chr1_4:21295213-21295232 | Msa0155730:intron | 40.0% |
CATCAGTTTCCTAAATGAGG+GGG | + | chr1_4:21295374-21295393 | None:intergenic | 40.0% | |
GCATCAGTTTCCTAAATGAG+GGG | + | chr1_4:21295375-21295394 | None:intergenic | 40.0% | |
CTGCATCAGTTTCCTAAATG+AGG | + | chr1_4:21295377-21295396 | None:intergenic | 40.0% | |
TGCAGATGAAGATCTCAAAG+AGG | - | chr1_4:21295392-21295411 | Msa0155730:intron | 40.0% | |
AGATCTCAAAGAGGCTTTCA+AGG | - | chr1_4:21295401-21295420 | Msa0155730:intron | 40.0% | |
TGGTTATATTTCCGCTAGTG+AGG | - | chr1_4:21295443-21295462 | Msa0155730:intron | 40.0% | |
TAAACATGCATTAACCGGAG+AGG | + | chr1_4:21295483-21295502 | None:intergenic | 40.0% | |
AAAGCAGAGAGAGAGAGAGA+GGG | + | chr1_4:21294736-21294755 | None:intergenic | 45.0% | |
!! | GAGGTTGATGCAGATGGAAA+TGG | - | chr1_4:21295219-21295238 | Msa0155730:intron | 45.0% |
AAAGCAGAGAGAGAGAGAGA+GGG | + | chr1_4:21294736-21294755 | None:intergenic | 45.0% | |
!! | GAGGTTGATGCAGATGGAAA+TGG | - | chr1_4:21295219-21295238 | Msa0155730:intron | 45.0% |
!!! | TATTTATTTATTTTTAATGA+AGG | + | chr1_4:21295829-21295848 | None:intergenic | 5.0% |
!! | ATAAATACATAATTTAATAT+GGG | + | chr1_4:21296691-21296710 | None:intergenic | 5.0% |
!!! | TATTTATTTATTTTTAATGA+AGG | + | chr1_4:21295829-21295848 | None:intergenic | 5.0% |
!! | ATAAATACATAATTTAATAT+GGG | + | chr1_4:21296691-21296710 | None:intergenic | 5.0% |
GAAAGCAGAGAGAGAGAGAG+AGG | + | chr1_4:21294737-21294756 | None:intergenic | 50.0% | |
CTTGGAGCTCTTCCTCTGTT+GGG | + | chr1_4:21295188-21295207 | None:intergenic | 50.0% | |
TCTTGGAGCTCTTCCTCTGT+TGG | + | chr1_4:21295189-21295208 | None:intergenic | 50.0% | |
GAAGCAGATTTGGACGGTGA+TGG | - | chr1_4:21296788-21296807 | Msa0155730:five_prime_UTR | 50.0% | |
GAAAGCAGAGAGAGAGAGAG+AGG | + | chr1_4:21294737-21294756 | None:intergenic | 50.0% | |
CTTGGAGCTCTTCCTCTGTT+GGG | + | chr1_4:21295188-21295207 | None:intergenic | 50.0% | |
TCTTGGAGCTCTTCCTCTGT+TGG | + | chr1_4:21295189-21295208 | None:intergenic | 50.0% | |
GAAGCAGATTTGGACGGTGA+TGG | - | chr1_4:21296788-21296807 | Msa0155730:five_prime_UTR | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 21294641 | 21296859 | 21294641 | ID=Msa0155730;Name=Msa0155730 |
chr1_4 | mRNA | 21294641 | 21296859 | 21294641 | ID=Msa0155730-mRNA-1;Parent=Msa0155730;Name=Msa0155730-mRNA-1;_AED=0.23;_eAED=0.24;_QI=184|0.66|0.5|1|1|1|4|0|117 |
chr1_4 | exon | 21294641 | 21294721 | 21294641 | ID=Msa0155730-mRNA-1:exon:7725;Parent=Msa0155730-mRNA-1 |
chr1_4 | exon | 21296078 | 21296116 | 21296078 | ID=Msa0155730-mRNA-1:exon:7724;Parent=Msa0155730-mRNA-1 |
chr1_4 | exon | 21296210 | 21296367 | 21296210 | ID=Msa0155730-mRNA-1:exon:7723;Parent=Msa0155730-mRNA-1 |
chr1_4 | exon | 21296600 | 21296859 | 21296600 | ID=Msa0155730-mRNA-1:exon:7722;Parent=Msa0155730-mRNA-1 |
chr1_4 | five_prime_UTR | 21296676 | 21296859 | 21296676 | ID=Msa0155730-mRNA-1:five_prime_utr;Parent=Msa0155730-mRNA-1 |
chr1_4 | CDS | 21296600 | 21296675 | 21296600 | ID=Msa0155730-mRNA-1:cds;Parent=Msa0155730-mRNA-1 |
chr1_4 | CDS | 21296210 | 21296367 | 21296210 | ID=Msa0155730-mRNA-1:cds;Parent=Msa0155730-mRNA-1 |
chr1_4 | CDS | 21296078 | 21296116 | 21296078 | ID=Msa0155730-mRNA-1:cds;Parent=Msa0155730-mRNA-1 |
chr1_4 | CDS | 21294641 | 21294721 | 21294641 | ID=Msa0155730-mRNA-1:cds;Parent=Msa0155730-mRNA-1 |
Gene Sequence |
Protein sequence |