AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561110 MtrunA17_Chr4g0051421 57.103 1084 181 16 1 803 1 1081 0.0 1122
Msa0561110 MtrunA17_Chr4g0051381 60.748 535 110 7 1 438 1 532 0.0 618
Msa0561110 MtrunA17_Chr4g0051381 52.975 521 91 8 429 796 15 534 5.98e-164 486
Msa0561110 MtrunA17_Chr4g0051411 60.748 535 110 9 1 438 1 532 0.0 612
Msa0561110 MtrunA17_Chr4g0051411 51.141 526 104 8 431 803 16 541 1.03e-159 475
Msa0561110 MtrunA17_Chr4g0051211 52.254 488 125 10 69 451 2 486 7.94e-155 461
Msa0561110 MtrunA17_Chr4g0051211 47.794 272 77 6 484 703 2 260 4.97e-68 233
Msa0561110 MtrunA17_Chr4g0051211 59.770 174 29 1 664 796 297 470 9.69e-57 202
Msa0561110 MtrunA17_Chr4g0051441 47.727 572 164 14 1 444 53 617 3.43e-154 464
Msa0561110 MtrunA17_Chr4g0051441 47.505 541 101 9 440 800 80 617 2.91e-140 428
Msa0561110 MtrunA17_Chr2g0293021 41.948 534 196 12 6 438 4 524 5.25e-123 380
Msa0561110 MtrunA17_Chr2g0293021 36.800 500 161 11 445 794 30 524 2.15e-83 276
Msa0561110 MtrunA17_Chr2g0292991 41.132 530 206 12 6 438 4 524 5.39e-121 375
Msa0561110 MtrunA17_Chr2g0292991 36.759 506 165 11 440 795 25 525 4.71e-84 277
Msa0561110 MtrunA17_Chr3g0079831 41.491 523 201 13 12 438 20 533 8.60e-120 372
Msa0561110 MtrunA17_Chr3g0079831 38.251 549 176 13 414 803 5 549 5.33e-104 331
Msa0561110 MtrunA17_Chr2g0292971 40.977 532 205 12 5 438 6 526 1.28e-118 369
Msa0561110 MtrunA17_Chr2g0292971 41.197 284 107 6 445 674 27 304 7.61e-57 204
Msa0561110 MtrunA17_Chr2g0292971 45.556 180 53 4 657 795 352 527 2.39e-36 144
Msa0561110 MtrunA17_Chr3g0079791 40.678 531 204 14 6 438 2 519 1.95e-117 365
Msa0561110 MtrunA17_Chr3g0079791 38.114 509 162 11 437 795 15 520 1.01e-97 313
Msa0561110 MtrunA17_Chr2g0293191 39.411 543 227 10 1 446 31 568 2.20e-117 367
Msa0561110 MtrunA17_Chr2g0293191 37.037 513 164 10 440 796 53 562 1.02e-93 304
Msa0561110 MtrunA17_Chr2g0293161 39.114 542 228 10 2 446 1 537 3.00e-117 365
Msa0561110 MtrunA17_Chr2g0293161 37.232 513 163 10 440 796 22 531 9.80e-95 306
Msa0561110 MtrunA17_Chr3g0079801 39.962 528 212 14 6 438 2 519 1.43e-114 358
Msa0561110 MtrunA17_Chr3g0079801 37.525 509 165 12 437 795 15 520 1.05e-95 308
Msa0561110 MtrunA17_Chr2g0293121 38.095 525 217 11 13 438 5 520 6.50e-113 355
Msa0561110 MtrunA17_Chr2g0293121 42.963 270 101 3 439 655 15 284 4.54e-61 216
Msa0561110 MtrunA17_Chr2g0293121 43.017 179 58 3 659 795 345 521 4.09e-34 138
Msa0561110 MtrunA17_Chr4g0051551 40.228 527 210 12 10 438 36 555 4.66e-111 350
Msa0561110 MtrunA17_Chr4g0051551 37.573 511 164 10 438 796 50 557 1.80e-89 293
Msa0561110 MtrunA17_Chr4g0028611 38.534 532 218 12 8 442 33 552 9.60e-108 341
Msa0561110 MtrunA17_Chr4g0028611 37.305 512 165 12 437 797 45 551 1.61e-90 295
Msa0561110 MtrunA17_Chr2g0293031 39.366 536 219 15 3 438 6 535 6.63e-107 338
Msa0561110 MtrunA17_Chr2g0293031 35.130 501 165 10 452 795 39 536 6.41e-84 278
Msa0561110 MtrunA17_Chr4g0048311 39.723 506 202 11 31 438 37 537 1.06e-106 338
Msa0561110 MtrunA17_Chr4g0048311 37.649 502 159 9 447 795 38 538 2.22e-86 284
Msa0561110 MtrunA17_Chr4g0051541 42.043 509 186 12 30 438 28 527 3.94e-106 336
Msa0561110 MtrunA17_Chr4g0051541 37.500 504 157 10 446 795 29 528 5.55e-78 261
Msa0561110 MtrunA17_Chr4g0048361 37.336 533 223 13 7 442 9 527 5.10e-104 330
Msa0561110 MtrunA17_Chr4g0048361 35.756 509 166 11 442 797 26 526 3.31e-86 283
Msa0561110 MtrunA17_Chr6g0457061 37.996 529 216 13 10 440 11 525 1.13e-103 330
Msa0561110 MtrunA17_Chr6g0457061 35.812 511 169 11 440 798 24 527 1.22e-87 287
Msa0561110 MtrunA17_Chr6g0457031 37.618 529 218 13 10 440 11 525 4.46e-103 328
Msa0561110 MtrunA17_Chr6g0457031 35.421 511 174 10 440 798 21 527 1.74e-87 287
Msa0561110 MtrunA17_Chr4g0046581 37.891 512 216 11 32 446 32 538 1.99e-102 326
Msa0561110 MtrunA17_Chr4g0046581 34.118 510 179 10 447 802 32 538 6.94e-76 256
Msa0561110 MtrunA17_Chr2g0293041 37.972 503 210 11 33 438 40 537 5.68e-102 325
Msa0561110 MtrunA17_Chr2g0293041 36.204 511 166 9 442 795 31 538 4.09e-90 294
Msa0561110 MtrunA17_Chr4g0051531 37.736 530 230 10 7 440 626 1151 8.37e-102 340
Msa0561110 MtrunA17_Chr4g0051531 38.672 512 212 12 32 446 39 545 2.19e-99 333
Msa0561110 MtrunA17_Chr4g0051531 42.308 260 98 3 448 655 654 913 4.81e-57 212
Msa0561110 MtrunA17_Chr4g0051531 40.152 264 103 4 447 655 39 302 1.47e-51 195
Msa0561110 MtrunA17_Chr4g0051531 40.323 186 67 3 653 797 358 540 9.11e-32 133
Msa0561110 MtrunA17_Chr4g0051531 39.691 194 73 3 648 800 965 1155 3.38e-29 125
Msa0561110 MtrunA17_Chr4g0048351 37.251 502 213 12 32 438 44 538 9.32e-99 317
Msa0561110 MtrunA17_Chr4g0048351 35.659 516 177 10 437 800 32 544 3.46e-91 297
Msa0561110 MtrunA17_Chr2g0288611 35.294 476 207 10 68 448 4 473 4.42e-85 278
Msa0561110 MtrunA17_Chr2g0288611 34.052 464 154 8 483 796 4 465 1.19e-71 243
Msa0561110 MtrunA17_Chr1g0188271 33.198 494 231 12 57 454 58 548 7.83e-69 237
Msa0561110 MtrunA17_Chr1g0188271 32.285 477 167 11 472 794 58 532 1.14e-56 203
Msa0561110 MtrunA17_Chr4g0048331 34.466 412 175 11 100 438 1 390 1.18e-66 227
Msa0561110 MtrunA17_Chr4g0048331 32.071 396 155 5 515 798 1 394 4.45e-55 195
Msa0561110 MtrunA17_Chr3g0079821 46.818 220 85 6 246 438 11 225 3.58e-51 179
Msa0561110 MtrunA17_Chr3g0079821 49.724 181 46 4 657 795 49 226 9.84e-42 152
Msa0561110 MtrunA17_Chr2g0320371 60.000 45 18 0 519 563 1 45 6.80e-13 63.5
Msa0561110 MtrunA17_Chr2g0320371 51.111 45 22 0 104 148 1 45 2.92e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561110 AT4G20820.1 38.491 530 226 12 2 438 1 523 1.47e-111 350
Msa0561110 AT4G20820.1 36.874 499 173 7 438 795 27 524 5.61e-98 315
Msa0561110 AT5G44440.1 39.587 533 219 14 2 438 1 526 5.83e-111 349
Msa0561110 AT5G44440.1 35.070 499 173 7 447 795 30 527 3.47e-90 294
Msa0561110 AT5G44440.2 39.587 533 219 14 2 438 71 596 8.10e-110 348
Msa0561110 AT5G44440.2 35.070 499 173 7 447 795 100 597 2.85e-89 294
Msa0561110 AT5G44360.1 38.837 533 225 14 1 438 1 527 8.36e-107 338
Msa0561110 AT5G44360.1 36.727 501 163 12 446 795 31 528 6.73e-86 283
Msa0561110 AT5G44360.2 38.837 533 225 14 1 438 17 543 1.03e-106 338
Msa0561110 AT5G44360.2 36.727 501 163 12 446 795 47 544 7.83e-86 283
Msa0561110 AT5G44400.1 39.850 532 212 13 10 438 7 533 3.99e-106 336
Msa0561110 AT5G44400.1 36.832 505 161 12 446 795 33 534 1.99e-81 271
Msa0561110 AT5G44380.1 39.850 532 223 11 2 438 7 536 1.32e-105 335
Msa0561110 AT5G44380.1 35.842 505 168 12 445 795 35 537 2.45e-77 260
Msa0561110 AT5G44380.2 39.850 532 223 11 2 438 47 576 4.37e-105 335
Msa0561110 AT5G44380.2 35.842 505 168 12 445 795 75 577 5.96e-77 260
Msa0561110 AT2G34790.1 38.417 518 212 13 21 440 21 529 9.06e-104 330
Msa0561110 AT2G34790.1 36.934 287 122 5 440 670 25 308 3.72e-42 162
Msa0561110 AT2G34790.1 41.209 182 60 4 657 798 357 531 3.99e-32 132
Msa0561110 AT5G44410.1 38.752 529 220 14 4 438 8 526 2.61e-103 329
Msa0561110 AT5G44410.1 36.436 505 172 10 437 795 26 527 4.66e-86 283
Msa0561110 AT1G30760.1 38.327 514 206 13 27 440 29 531 5.09e-103 328
Msa0561110 AT1G30760.1 36.346 509 160 14 446 798 33 533 4.38e-80 267
Msa0561110 AT1G30760.2 38.327 514 206 13 27 440 47 549 6.40e-103 328
Msa0561110 AT1G30760.2 36.346 509 160 14 446 798 51 551 5.74e-80 268
Msa0561110 AT1G30730.1 37.051 529 222 12 8 438 7 522 3.13e-101 323
Msa0561110 AT1G30730.1 34.531 501 170 8 448 795 28 523 5.72e-83 275
Msa0561110 AT1G11770.1 38.247 502 213 12 32 440 31 528 5.01e-100 320
Msa0561110 AT1G11770.1 36.527 501 164 10 447 796 31 528 3.82e-83 276
Msa0561110 AT1G26420.1 37.618 529 229 14 4 438 1 522 3.23e-99 318
Msa0561110 AT1G26420.1 35.560 509 167 12 441 795 22 523 3.44e-80 268
Msa0561110 AT1G30700.1 36.862 529 230 12 8 438 1 523 7.10e-99 317
Msa0561110 AT1G30700.1 36.546 498 161 10 450 795 30 524 4.95e-84 278
Msa0561110 AT4G20840.1 36.779 503 221 11 31 440 36 534 2.79e-98 316
Msa0561110 AT4G20840.1 33.992 506 180 10 447 801 37 539 1.73e-83 276
Msa0561110 AT5G44390.1 36.940 536 238 14 3 440 6 539 3.20e-98 316
Msa0561110 AT5G44390.1 34.623 517 178 14 437 796 26 539 5.07e-75 254
Msa0561110 AT1G34575.1 37.972 503 208 14 30 438 29 521 3.95e-96 310
Msa0561110 AT1G34575.1 35.714 504 169 12 446 800 30 527 2.08e-82 273
Msa0561110 AT4G20860.1 40.941 425 178 11 82 438 107 526 5.08e-96 310
Msa0561110 AT4G20860.1 37.647 425 135 9 497 795 107 527 2.76e-78 262
Msa0561110 AT1G26400.1 36.023 533 231 15 4 438 1 521 1.05e-95 308
Msa0561110 AT1G26400.1 37.931 435 126 9 497 798 103 526 4.23e-77 259
Msa0561110 AT1G26380.1 37.356 522 227 13 11 438 7 522 1.26e-95 309
Msa0561110 AT1G26380.1 35.632 522 169 12 439 803 20 531 5.62e-81 270
Msa0561110 AT1G30720.1 38.124 501 209 11 33 438 29 523 6.88e-95 306
Msa0561110 AT1G30720.1 34.731 501 169 10 448 795 29 524 1.24e-74 253
Msa0561110 AT1G30710.1 35.810 525 233 14 8 438 11 525 4.45e-93 302
Msa0561110 AT1G30710.1 34.337 498 170 12 450 795 34 526 9.14e-77 258
Msa0561110 AT4G20830.1 36.944 517 229 11 26 449 32 544 1.60e-92 301
Msa0561110 AT4G20830.1 33.665 502 179 10 446 796 37 535 3.21e-73 250
Msa0561110 AT4G20800.1 35.700 507 232 10 23 438 19 522 3.78e-91 296
Msa0561110 AT4G20800.1 35.471 499 169 10 447 795 28 523 2.52e-78 263
Msa0561110 AT4G20830.2 36.811 508 224 11 26 440 32 535 9.62e-91 296
Msa0561110 AT4G20830.2 33.728 507 182 10 446 801 37 540 4.04e-74 251
Msa0561110 AT1G26410.1 37.255 510 214 15 26 438 46 546 1.17e-90 296
Msa0561110 AT1G26410.1 35.944 498 166 11 448 795 53 547 4.47e-79 265
Msa0561110 AT1G01980.1 37.402 508 216 14 31 440 30 533 5.15e-90 294
Msa0561110 AT1G01980.1 35.294 510 171 12 447 800 31 537 8.61e-75 253
Msa0561110 AT1G30740.1 37.970 532 220 16 12 440 3 527 4.54e-89 291
Msa0561110 AT1G30740.1 33.135 504 179 14 447 796 28 527 6.99e-61 215
Msa0561110 AT1G30740.2 37.970 532 220 16 12 440 6 530 6.59e-89 291
Msa0561110 AT1G30740.2 33.135 504 179 14 447 796 31 530 9.77e-61 215
Msa0561110 AT2G34810.1 35.503 507 225 10 31 438 33 536 2.13e-88 290
Msa0561110 AT2G34810.1 33.135 504 182 9 447 795 34 537 2.80e-70 241
Msa0561110 AT1G26390.1 39.860 429 179 10 82 438 103 524 6.06e-87 285
Msa0561110 AT1G26390.1 38.443 424 135 6 497 795 103 525 6.57e-76 256

Find 146 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCCTTCTAATCCAGTTTC+AGG 0.203252 4_1:-60557370 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4_1:+60553051 Msa0561110:CDS
CGCCTTTCGGAAATTGAAAA+AGG 0.237346 4_1:-60552611 None:intergenic
CCATATCATCATTGCATCTT+TGG 0.239092 4_1:-60557419 None:intergenic
AAGACCATATTTACGCATTA+AGG 0.240019 4_1:-60556780 None:intergenic
TAGAAAACTTTATAGTTATA+TGG 0.249330 4_1:+60557685 Msa0561110:intron
AAAACTCCTATTCCTGAAAA+TGG 0.251375 4_1:+60552714 Msa0561110:CDS
AATTATAGAGACCTTGATAT+TGG 0.257911 4_1:+60557746 Msa0561110:CDS
CACCTGAAGTGTTGCTTAAC+AGG 0.261175 4_1:+60557290 Msa0561110:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4_1:+60552226 Msa0561110:CDS
GGTGGTGGAGGAGCAAGTTT+TGG 0.286201 4_1:+60556899 Msa0561110:CDS
TCTAATCCAGTTTCAGGAAT+TGG 0.286688 4_1:-60557364 None:intergenic
GGTGGTGGAGGAGCAAGTTT+TGG 0.291186 4_1:+60552258 Msa0561110:CDS
CAATGGGTGAGGATTTCTTT+TGG 0.296855 4_1:+60556867 Msa0561110:CDS
GTTTCAAAGTCTCCAAGAAT+TGG 0.300797 4_1:+60552972 Msa0561110:CDS
AGAATTCCAATTCCTGAAAC+TGG 0.301096 4_1:+60557358 Msa0561110:CDS
ATTATAGAGACCTTGATATT+GGG 0.303431 4_1:+60557747 Msa0561110:CDS
TGATAAACTCATTCCCTTGA+TGG 0.306316 4_1:+60552515 Msa0561110:CDS
GCTACAAGCAAGCTAGTATC+TGG 0.310882 4_1:+60557795 Msa0561110:CDS
TTTGCTTTGTAAATAAATCT+TGG 0.313472 4_1:-60552678 None:intergenic
GTTTCCTTATGGTGGAATAA+TGG 0.315442 4_1:+60552797 Msa0561110:CDS
GTGACAATTACAAGAGGTTT+TGG 0.315638 4_1:-60556440 None:intergenic
CACTTCAGTGGTGGTGGATA+TGG 0.317127 4_1:+60556755 Msa0561110:intron
GAACCATCTTCATCAAATAA+AGG 0.318041 4_1:-60557397 None:intergenic
CCTTTGAAAGACAATATTGA+TGG 0.321417 4_1:-60552424 None:intergenic
CCAAAGATGCAATGATGATA+TGG 0.328286 4_1:+60557419 Msa0561110:CDS
ACTTCAGGTGTAGAACCTTT+TGG 0.341232 4_1:-60557277 None:intergenic
ATTCCTGAAAATGGATTAGA+AGG 0.350473 4_1:+60552723 Msa0561110:CDS
ACAGTAGGACAAACACTTGC+AGG 0.361034 4_1:-60556719 None:intergenic
TTGAGTTATGTGAATAACTA+TGG 0.361143 4_1:-60556319 None:intergenic
TAGTTGATATACCCAATTCT+TGG 0.362017 4_1:-60552984 None:intergenic
CATTGATCTCGTAAACTTCA+AGG 0.362548 4_1:+60551951 Msa0561110:CDS
ATATTCATTACCAGGTTGAT+TGG 0.363341 4_1:+60552874 Msa0561110:intron
AGAACTGCTTGGGTTCAGTC+TGG 0.364440 4_1:+60551997 Msa0561110:CDS
TTGCTTTGTAAATAAATCTT+GGG 0.367450 4_1:-60552677 None:intergenic
ATTCCTGAAACTGGATTAGA+AGG 0.376708 4_1:+60557367 Msa0561110:CDS
AACTATAGAGACCTTGATAT+TGG 0.379359 4_1:+60553002 Msa0561110:intron
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4_1:+60553088 Msa0561110:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4_1:+60557832 Msa0561110:CDS
CCATATCATCATTGCACCTT+TGG 0.387821 4_1:-60552775 None:intergenic
CTTGGAGACTTTGAAACAAA+AGG 0.388823 4_1:-60552966 None:intergenic
CACTTCAGTGGTGGCGGCTA+TGG 0.388986 4_1:+60552114 Msa0561110:intron
TATCGATGTGTAAGAGGAAT+TGG 0.395431 4_1:-60556372 None:intergenic
CAGCTGGGAAACCGAGATTT+CGG 0.397206 4_1:-60552062 None:intergenic
GTAAACACAGTAACAATTGA+TGG 0.397213 4_1:-60556959 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4_1:+60553052 Msa0561110:CDS
CCAAAGGTGCAATGATGATA+TGG 0.399938 4_1:+60552775 Msa0561110:CDS
TACCGGTGAGTAAGAGGAAT+TGG 0.401456 4_1:-60551731 None:intergenic
ACTTCAGGCAATGCGCCTTT+CGG 0.404901 4_1:-60552624 None:intergenic
GTAAACACCGTCACAGTTGA+TGG 0.407633 4_1:-60552318 None:intergenic
AAGCGGCGGCCACGACTTTG+AGG 0.408872 4_1:+60556535 Msa0561110:CDS
TGAGTAAGAGGAATTGGTTT+TGG 0.410813 4_1:-60551725 None:intergenic
TTTCAAAGTCTCCAAGAATT+GGG 0.412921 4_1:+60552973 Msa0561110:CDS
AAAATGGATTAGAAGGAATA+TGG 0.414702 4_1:+60552730 Msa0561110:CDS
AAAATTGTATTGAAATGAGT+TGG 0.420053 4_1:+60552571 Msa0561110:CDS
ACGAGATCAATGACAACAAA+TGG 0.429670 4_1:-60551940 None:intergenic
ATGAGATCAATGACGACAAA+TGG 0.430921 4_1:-60556581 None:intergenic
GTGATGATGACAAGTGGTTT+AGG 0.431669 4_1:-60551799 None:intergenic
TGGGCTATTAGGGGTGGTGG+AGG 0.433155 4_1:+60556887 Msa0561110:CDS
ATGATGATATGGTTTCCTTA+TGG 0.438370 4_1:+60552786 Msa0561110:CDS
AAAACTCTATTTGCGTCCCT+TGG 0.438567 4_1:-60557924 None:intergenic
TGGCCTTTATTTGATGAAGA+TGG 0.441205 4_1:+60557394 Msa0561110:CDS
GCTGGTGCTTGTCCTACAAT+AGG 0.442267 4_1:+60552081 Msa0561110:CDS
AAATGGAACTTCTGAAACAT+AGG 0.442493 4_1:-60551923 None:intergenic
GTTCTGTTAAGCAACACTTC+AGG 0.449144 4_1:-60552639 None:intergenic
TGAAATGAGTTGGATTGAAT+CGG 0.452927 4_1:+60552581 Msa0561110:CDS
ATAGACAAGTATGAGCTTAG+AGG 0.453895 4_1:-60551574 None:intergenic
CTTGGTGACTTCGAAACAAA+AGG 0.457842 4_1:-60557710 None:intergenic
CTACAAAGCTTGTTCACAAA+TGG 0.461908 4_1:+60552367 Msa0561110:CDS
GTCCTGTTAAGCAACACTTC+AGG 0.470295 4_1:-60557292 None:intergenic
TTACCAGGTTGATTGGCAAC+AGG 0.475690 4_1:+60552881 Msa0561110:intron
TTTGAGTACCGGTGAGTAAG+AGG 0.477829 4_1:-60551737 None:intergenic
TGTCGAAAGCAGAACTGCTT+GGG 0.478113 4_1:+60551987 Msa0561110:CDS
GTTCAGTCTGGGGCAACACT+TGG 0.481353 4_1:+60552009 Msa0561110:CDS
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4_1:-60553123 None:intergenic
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4_1:-60557867 None:intergenic
TTGGAGTATCGATGTGTAAG+AGG 0.483959 4_1:-60556378 None:intergenic
GAACTGCTTGGGTTCAGTCT+GGG 0.485533 4_1:+60551998 Msa0561110:CDS
GAACAAAAGTTTCCTGAGTT+GGG 0.486919 4_1:+60552537 Msa0561110:CDS
AAAACTGCATGGGTTCAATC+TGG 0.487082 4_1:+60556638 Msa0561110:CDS
CGAAATCTCGGTTTCCCAGC+TGG 0.487820 4_1:+60552063 Msa0561110:CDS
TGTCCACCAACACCTATTGT+AGG 0.487897 4_1:-60552093 None:intergenic
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4_1:+60552246 Msa0561110:CDS
ATTGGTGTGAATAACATTGA+TGG 0.497447 4_1:+60553020 Msa0561110:CDS
TAATTAATATATGCAGCTCT+TGG 0.501793 4_1:-60557728 None:intergenic
GTTTACTGTTGCAAAAGCAT+TGG 0.502433 4_1:+60552335 Msa0561110:CDS
GTATCCATTATTCCACCATA+AGG 0.507512 4_1:-60552801 None:intergenic
ATTGTAGGACAAGCACCAGC+TGG 0.507999 4_1:-60552078 None:intergenic
AAACTGGATTAGAAGGCATA+TGG 0.508202 4_1:+60557374 Msa0561110:CDS
ATTGGGGTGAATAACATTGA+TGG 0.510060 4_1:+60557764 Msa0561110:CDS
TGAGTTGTATATTTGAGTAC+CGG 0.511638 4_1:-60551748 None:intergenic
GATGAATATTGTCTGGCAAA+GGG 0.514394 4_1:+60557066 Msa0561110:CDS
TAGACCATATTTACGCACTA+AGG 0.515862 4_1:-60552139 None:intergenic
GGAACAAAAGTTTCCTGAGT+TGG 0.517366 4_1:+60552536 Msa0561110:CDS
ATATAGAGATGAATATTGTC+TGG 0.517958 4_1:+60557059 Msa0561110:CDS
TGTGTAAGAGGAATTGGCTT+TGG 0.521968 4_1:-60556366 None:intergenic
AGCGGCGGCCACGACTTTGA+GGG 0.526742 4_1:+60556536 Msa0561110:CDS
TCTCTAACCACACCCAACTC+AGG 0.530976 4_1:-60552549 None:intergenic
AATAACTATGGAGACATTGA+AGG 0.533044 4_1:-60556307 None:intergenic
TGCAGATTCGAACCCGTAGT+GGG 0.533405 4_1:+60551878 Msa0561110:intron
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4_1:+60552209 Msa0561110:CDS
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4_1:+60556850 Msa0561110:CDS
CTACAAGCAAGCTAGTATCT+GGG 0.536155 4_1:+60557796 Msa0561110:CDS
AGATGAATATTGTCTGGCAA+AGG 0.537229 4_1:+60557065 Msa0561110:CDS
AATAACTAGAAAGACATTGA+AGG 0.537999 4_1:-60551666 None:intergenic
TGTTATTCACCCCAATATCA+AGG 0.539511 4_1:-60557757 None:intergenic
TGTTATTCACACCAATATCA+AGG 0.539812 4_1:-60553013 None:intergenic
ATGTCGAAAGCAGAACTGCT+TGG 0.545757 4_1:+60551986 Msa0561110:CDS
TTATAGAGACCTTGATATTG+GGG 0.545838 4_1:+60557748 Msa0561110:CDS
TATACCTTCTCATGTGTCCA+AGG 0.549356 4_1:+60557907 Msa0561110:CDS
CGTCCCTTGGACACATGAGA+AGG 0.549392 4_1:-60557911 None:intergenic
AACTGCTTGGGTTCAGTCTG+GGG 0.551277 4_1:+60551999 Msa0561110:CDS
CCATCAATATTGTCTTTCAA+AGG 0.551890 4_1:+60552424 Msa0561110:CDS
AAAGTTTCCTGAGTTGGGTG+TGG 0.552427 4_1:+60552542 Msa0561110:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4_1:+60552210 Msa0561110:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4_1:+60556851 Msa0561110:CDS
GGTGGACACTTCAGTGGTGG+TGG 0.566542 4_1:+60556749 Msa0561110:intron
AACCAATTCCTCTTACTCAC+CGG 0.574597 4_1:+60551729 Msa0561110:CDS
TGTTCACAAATGGCAGTATG+TGG 0.577932 4_1:+60552377 Msa0561110:CDS
CAACAAAGCTTGTTCACAAG+TGG 0.578289 4_1:+60557008 Msa0561110:CDS
ATGATATGGTTTCCTTATGG+TGG 0.582909 4_1:+60552789 Msa0561110:CDS
TGACAGAGAAGCAATGGGTG+AGG 0.588886 4_1:+60556856 Msa0561110:CDS
AAGTGGTTTAGGTGTTGTGT+AGG 0.592233 4_1:-60551788 None:intergenic
CTGCAGATTCGAACCCGTAG+TGG 0.597534 4_1:+60551877 Msa0561110:intron
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4_1:+60553053 Msa0561110:CDS
TTGTAGGACAAGCACCAGCT+GGG 0.603228 4_1:-60552077 None:intergenic
CAGGTTGATTGGCAACAGGA+AGG 0.608073 4_1:+60552885 Msa0561110:intron
AGGATAGACCCTCAAAGTCA+TGG 0.608222 4_1:-60551903 None:intergenic
CAGATTCGAACCCGTAGTGG+GGG 0.608743 4_1:+60551880 Msa0561110:intron
ATGATATGGTTTCCATATGG+TGG 0.610132 4_1:+60557433 Msa0561110:CDS
GTTCAATCTGGTGCAACACT+TGG 0.613052 4_1:+60556650 Msa0561110:CDS
CAGTAGGACAAACACTTGCA+GGG 0.613601 4_1:-60556718 None:intergenic
ATGATGATATGGTTTCCATA+TGG 0.616039 4_1:+60557430 Msa0561110:CDS
GCAGATTCGAACCCGTAGTG+GGG 0.619010 4_1:+60551879 Msa0561110:intron
GCAACAGGAAGGTGATGAGG+TGG 0.620727 4_1:+60552896 Msa0561110:CDS
GGTGGACACTTCAGTGGTGG+CGG 0.622668 4_1:+60552108 Msa0561110:intron
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4_1:+60552311 Msa0561110:CDS
TTTCATGAAGATGGTGCCAA+AGG 0.627110 4_1:+60552759 Msa0561110:intron
TACAAGCAAGCTAGTATCTG+GGG 0.640553 4_1:+60557797 Msa0561110:CDS
ATACCTTCTCATGTGTCCAA+GGG 0.642295 4_1:+60557908 Msa0561110:CDS
AACTATGGAGACATTGAAGG+AGG 0.660817 4_1:-60556304 None:intergenic
CAGATTCGAATTCGAAGCGG+CGG 0.660883 4_1:+60556521 Msa0561110:intron
AAGACAGACCCTCAAAGTCG+TGG 0.674602 4_1:-60556544 None:intergenic
AGTGTTGCTTAACAGAACAC+TGG 0.704218 4_1:+60552644 Msa0561110:CDS
TTGGCAACAGGAAGGTGATG+AGG 0.705230 4_1:+60552893 Msa0561110:CDS
CTACAGATTCGAATTCGAAG+CGG 0.715605 4_1:+60556518 Msa0561110:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAATTTATAATTACA+TGG + chr4_1:60552941-60552960 Msa0561110:CDS 10.0%
!!! TATCTTTTCTTTATAAATAA+AGG + chr4_1:60553270-60553289 Msa0561110:intron 10.0%
!!! AAACTATTTTACAAAAAAAT+AGG - chr4_1:60555699-60555718 None:intergenic 10.0%
!! AATTTAAATTCAAGTAAAAA+AGG + chr4_1:60557091-60557110 Msa0561110:intron 10.0%
!! TTCTTTATAAATAAAGGTTT+AGG + chr4_1:60553276-60553295 Msa0561110:intron 15.0%
!! TCTTTATAAATAAAGGTTTA+GGG + chr4_1:60553277-60553296 Msa0561110:intron 15.0%
!!! TTTTTTTATTTGAAAAGAAG+TGG - chr4_1:60555337-60555356 None:intergenic 15.0%
!!! ATACTTTATTTAAGTATGTT+TGG + chr4_1:60555503-60555522 Msa0561110:intron 15.0%
!! TAGAAAACTTTATAGTTATA+TGG + chr4_1:60557685-60557704 Msa0561110:intron 15.0%
!!! ATGATTTTGAGAACAAATTA+TGG - chr4_1:60551854-60551873 None:intergenic 20.0%
!! AGGATAAATTCAAGTAAAAA+AGG + chr4_1:60552444-60552463 Msa0561110:intron 20.0%
!! AAAATTGTATTGAAATGAGT+TGG + chr4_1:60552571-60552590 Msa0561110:CDS 20.0%
!! TTGCTTTGTAAATAAATCTT+GGG - chr4_1:60552680-60552699 None:intergenic 20.0%
!! TTTGCTTTGTAAATAAATCT+TGG - chr4_1:60552681-60552700 None:intergenic 20.0%
!!! TATAAATTTCCTTTTCTATG+AGG - chr4_1:60552852-60552871 None:intergenic 20.0%
!!! TAAATTAATTTGAGTAGCTA+AGG + chr4_1:60553194-60553213 Msa0561110:intron 20.0%
!! CTTTATAAATAAAGGTTTAG+GGG + chr4_1:60553278-60553297 Msa0561110:intron 20.0%
!! ATATACACATAGAATATCTA+GGG - chr4_1:60553457-60553476 None:intergenic 20.0%
!! AATATACACATAGAATATCT+AGG - chr4_1:60553458-60553477 None:intergenic 20.0%
!! TTGAATAGATTACTAAAGTT+TGG + chr4_1:60553525-60553544 Msa0561110:intron 20.0%
!! ATATGTTTGTGTTTATTGAA+AGG + chr4_1:60553561-60553580 Msa0561110:intron 20.0%
!! AAAATGTTTACAATAAAGCA+TGG - chr4_1:60554370-60554389 None:intergenic 20.0%
!! TTGATTTACTTCTTTATACA+AGG - chr4_1:60554504-60554523 None:intergenic 20.0%
!! TACTTGTAATAAAAACTTGA+GGG - chr4_1:60554904-60554923 None:intergenic 20.0%
!!! AATTATACATTTCAAGTGTA+AGG - chr4_1:60554980-60554999 None:intergenic 20.0%
!! GACTAAACTAATTAATTAAG+CGG + chr4_1:60555004-60555023 Msa0561110:intron 20.0%
!! AAAATGATTTCAATGAAGTT+AGG + chr4_1:60555353-60555372 Msa0561110:intron 20.0%
!!! TAATTTTTATTGGTATATGG+CGG - chr4_1:60556125-60556144 None:intergenic 20.0%
!!! CTCTAATTTTTATTGGTATA+TGG - chr4_1:60556128-60556147 None:intergenic 20.0%
!!! CTATAAGCTCTAATTTTTAT+TGG - chr4_1:60556135-60556154 None:intergenic 20.0%
!! AATATTGTATTGAAATGAGT+TGG + chr4_1:60557224-60557243 Msa0561110:intron 20.0%
!! NNNNNNNNTCTATGAGGAAA+TGG - chr4_1:60557490-60557509 None:intergenic 20.0%
! AATAACTAGAAAGACATTGA+AGG - chr4_1:60551669-60551688 None:intergenic 25.0%
! AATTATGGCTGTTTGAATAT+GGG - chr4_1:60551839-60551858 None:intergenic 25.0%
! AAATTATGGCTGTTTGAATA+TGG - chr4_1:60551840-60551859 None:intergenic 25.0%
!! ATATTTCAATCCTTGTTTCT+TGG + chr4_1:60552486-60552505 Msa0561110:intron 25.0%
!!! AAAATGGATTAGAAGGAATA+TGG + chr4_1:60552730-60552749 Msa0561110:CDS 25.0%
! TTTATACCATATTCATTACC+AGG + chr4_1:60552866-60552885 Msa0561110:intron 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG - chr4_1:60553137-60553156 None:intergenic 25.0%
! TTAATTTATTTGTGTCCCTT+GGG - chr4_1:60553182-60553201 None:intergenic 25.0%
! ATTAATTTATTTGTGTCCCT+TGG - chr4_1:60553183-60553202 None:intergenic 25.0%
! TATACACATAGAATATCTAG+GGG - chr4_1:60553456-60553475 None:intergenic 25.0%
! ACACCATTTAATCAACAAAT+TGG + chr4_1:60553638-60553657 Msa0561110:intron 25.0%
! AATGTAGTTGATTGTTTGTA+AGG - chr4_1:60553884-60553903 None:intergenic 25.0%
! CAGAGTTATACAGAAAAAAT+TGG + chr4_1:60553954-60553973 Msa0561110:intron 25.0%
! AGAATTTACGTAACAAACTT+CGG - chr4_1:60554194-60554213 None:intergenic 25.0%
!!! AAGTTTGTTACGTAAATTCT+GGG + chr4_1:60554194-60554213 Msa0561110:intron 25.0%
! TTTGAGAATTTGATAGAGTT+TGG + chr4_1:60554263-60554282 Msa0561110:intron 25.0%
! TTGAGAATTTGATAGAGTTT+GGG + chr4_1:60554264-60554283 Msa0561110:intron 25.0%
!!! TGGGATAATTTGCTATATTT+TGG + chr4_1:60554283-60554302 Msa0561110:intron 25.0%
!! ATGCTAATTCTAAAAAACTG+CGG - chr4_1:60554473-60554492 None:intergenic 25.0%
! TTTGGATCAGAATCTTTATT+GGG - chr4_1:60554663-60554682 None:intergenic 25.0%
! ATTTGGATCAGAATCTTTAT+TGG - chr4_1:60554664-60554683 None:intergenic 25.0%
! TAAAGATTCTGATCCAAATA+TGG + chr4_1:60554665-60554684 Msa0561110:intron 25.0%
! AAACTTAAACCGTCTATAAA+AGG + chr4_1:60554825-60554844 Msa0561110:intron 25.0%
! ACTTGTAATAAAAACTTGAG+GGG - chr4_1:60554903-60554922 None:intergenic 25.0%
! GTACTTGTAATAAAAACTTG+AGG - chr4_1:60554905-60554924 None:intergenic 25.0%
! AACTAATTAATTAAGCGGAT+TGG + chr4_1:60555009-60555028 Msa0561110:intron 25.0%
!!! TCTTTGTGCAAATTTTAGAA+TGG + chr4_1:60555295-60555314 Msa0561110:intron 25.0%
! AAAGTATGCTAAAACTACAA+TGG - chr4_1:60555490-60555509 None:intergenic 25.0%
! ATAAGCACTTATTTGATAAG+CGG + chr4_1:60555746-60555765 Msa0561110:intron 25.0%
! ATAAGCACTTATTTGATAAG+CGG + chr4_1:60555746-60555765 Msa0561110:intron 25.0%
! TTGAGTTATGTGAATAACTA+TGG - chr4_1:60551681-60551700 None:intergenic 25.0%
! ATATAGAGATGAATATTGTC+TGG + chr4_1:60557059-60557078 Msa0561110:CDS 25.0%
!!! TTATTTCAAGCTTTGTTTCT+TGG + chr4_1:60557139-60557158 Msa0561110:intron 25.0%
!!! TACTTTTTTCAGTTTCCAAA+AGG + chr4_1:60557262-60557281 Msa0561110:intron 25.0%
! CTTATTCATGATTCAATACT+CGG + chr4_1:60557610-60557629 Msa0561110:intron 25.0%
! TGGAAAAACTGCATATTAAT+TGG + chr4_1:60557660-60557679 Msa0561110:intron 25.0%
! TAATTAATATATGCAGCTCT+TGG - chr4_1:60557731-60557750 None:intergenic 25.0%
! AATTATAGAGACCTTGATAT+TGG + chr4_1:60557746-60557765 Msa0561110:CDS 25.0%
! ATTATAGAGACCTTGATATT+GGG + chr4_1:60557747-60557766 Msa0561110:CDS 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG - chr4_1:60553137-60553156 None:intergenic 25.0%
TGAGTTGTATATTTGAGTAC+CGG - chr4_1:60551751-60551770 None:intergenic 30.0%
!! AAATGGAACTTCTGAAACAT+AGG - chr4_1:60551926-60551945 None:intergenic 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG + chr4_1:60552227-60552246 Msa0561110:CDS 30.0%
!!! GTTTTGGAGTCATAATTTCA+TGG + chr4_1:60552274-60552293 Msa0561110:CDS 30.0%
! CCTTTGAAAGACAATATTGA+TGG - chr4_1:60552427-60552446 None:intergenic 30.0%
CCATCAATATTGTCTTTCAA+AGG + chr4_1:60552424-60552443 Msa0561110:CDS 30.0%
! TGAAATGAGTTGGATTGAAT+CGG + chr4_1:60552581-60552600 Msa0561110:CDS 30.0%
!!! TACCTTTTTCAATTTCCGAA+AGG + chr4_1:60552609-60552628 Msa0561110:CDS 30.0%
AAAACTCCTATTCCTGAAAA+TGG + chr4_1:60552714-60552733 Msa0561110:CDS 30.0%
!! TCTAATCCATTTTCAGGAAT+AGG - chr4_1:60552723-60552742 None:intergenic 30.0%
!! ATTCCTGAAAATGGATTAGA+AGG + chr4_1:60552723-60552742 Msa0561110:CDS 30.0%
! ATTCCTTCTAATCCATTTTC+AGG - chr4_1:60552729-60552748 None:intergenic 30.0%
ATGATGATATGGTTTCCTTA+TGG + chr4_1:60552786-60552805 Msa0561110:CDS 30.0%
ATTCCATTTCCTCATAGAAA+AGG + chr4_1:60552840-60552859 Msa0561110:intron 30.0%
! TTTCCTTTTCTATGAGGAAA+TGG - chr4_1:60552846-60552865 None:intergenic 30.0%
! AATCAACCTGGTAATGAATA+TGG - chr4_1:60552875-60552894 None:intergenic 30.0%
!! ATATTCATTACCAGGTTGAT+TGG + chr4_1:60552874-60552893 Msa0561110:intron 30.0%
TGGAAAAACTGCACATTAAT+TGG + chr4_1:60552916-60552935 Msa0561110:CDS 30.0%
TTTCAAAGTCTCCAAGAATT+GGG + chr4_1:60552973-60552992 Msa0561110:CDS 30.0%
! TAGTTGATATACCCAATTCT+TGG - chr4_1:60552987-60553006 None:intergenic 30.0%
AACTATAGAGACCTTGATAT+TGG + chr4_1:60553002-60553021 Msa0561110:intron 30.0%
TGTTATTCACACCAATATCA+AGG - chr4_1:60553016-60553035 None:intergenic 30.0%
ATTGGTGTGAATAACATTGA+TGG + chr4_1:60553020-60553039 Msa0561110:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG + chr4_1:60553088-60553107 Msa0561110:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG - chr4_1:60553126-60553145 None:intergenic 30.0%
TTACATATTACATGCCAACA+AGG + chr4_1:60553363-60553382 Msa0561110:intron 30.0%
!!! CAAGATTTCCACATCTTTTT+TGG + chr4_1:60553403-60553422 Msa0561110:intron 30.0%
ATACTCATCCAAAAAAGATG+TGG - chr4_1:60553414-60553433 None:intergenic 30.0%
AAGGGTTAACTAGGAATATA+GGG - chr4_1:60553616-60553635 None:intergenic 30.0%
AAAGGGTTAACTAGGAATAT+AGG - chr4_1:60553617-60553636 None:intergenic 30.0%
GTTGATTAAATGGTGTGAAA+GGG - chr4_1:60553634-60553653 None:intergenic 30.0%
! TGTTGATTAAATGGTGTGAA+AGG - chr4_1:60553635-60553654 None:intergenic 30.0%
!! TGGCCAATTTGTTGATTAAA+TGG - chr4_1:60553644-60553663 None:intergenic 30.0%
CAGTACATTTATCAGTTTCT+CGG + chr4_1:60553765-60553784 Msa0561110:intron 30.0%
! AATTCTAGGTTAGCATGTTT+TGG - chr4_1:60554024-60554043 None:intergenic 30.0%
!! GAAGTTTGTTACGTAAATTC+TGG + chr4_1:60554193-60554212 Msa0561110:intron 30.0%
TAATTCTAAGTAACACTCCA+TGG - chr4_1:60554323-60554342 None:intergenic 30.0%
!! TGGAGTGTTACTTAGAATTA+TGG + chr4_1:60554323-60554342 Msa0561110:intron 30.0%
!! GGAGTGTTACTTAGAATTAT+GGG + chr4_1:60554324-60554343 Msa0561110:intron 30.0%
! TGCTAATTCTAAAAAACTGC+GGG - chr4_1:60554472-60554491 None:intergenic 30.0%
AAACTGCTCTTATAACATGT+TGG + chr4_1:60554522-60554541 Msa0561110:intron 30.0%
!!! ATGTGCACAAATTTTAGAGT+GGG - chr4_1:60554856-60554875 None:intergenic 30.0%
!! AATGTGCACAAATTTTAGAG+TGG - chr4_1:60554857-60554876 None:intergenic 30.0%
CAATTGGAGAGAATATAACT+TGG - chr4_1:60555041-60555060 None:intergenic 30.0%
TGAAGTATGCAATTGACAAT+TGG - chr4_1:60555057-60555076 None:intergenic 30.0%
ATATTTCCTTGTCTCTGAAT+TGG + chr4_1:60555124-60555143 Msa0561110:intron 30.0%
CCTACGATAACTTATGATAA+CGG + chr4_1:60555643-60555662 Msa0561110:intron 30.0%
TTGGTGCGAAGTTTATATAA+AGG + chr4_1:60555851-60555870 Msa0561110:intron 30.0%
AATAACTATGGAGACATTGA+AGG - chr4_1:60556310-60556329 None:intergenic 30.0%
!!! TGAGATTTTGAGTTGAGAAT+TGG - chr4_1:60556400-60556419 None:intergenic 30.0%
!! TGAATATGGGATATTTCTAG+AGG - chr4_1:60556467-60556486 None:intergenic 30.0%
GATTATGGTTGCTTGAATAT+GGG - chr4_1:60556480-60556499 None:intergenic 30.0%
AGATTATGGTTGCTTGAATA+TGG - chr4_1:60556481-60556500 None:intergenic 30.0%
ATGTACACAAAAAAACTGCA+TGG + chr4_1:60556627-60556646 Msa0561110:CDS 30.0%
TGTACACAAAAAAACTGCAT+GGG + chr4_1:60556628-60556647 Msa0561110:CDS 30.0%
!!! AACCTAGAGTTTTGCTTTTT+TGG - chr4_1:60556697-60556716 None:intergenic 30.0%
AAGACCATATTTACGCATTA+AGG - chr4_1:60556783-60556802 None:intergenic 30.0%
GTAAACACAGTAACAATTGA+TGG - chr4_1:60556962-60556981 None:intergenic 30.0%
GTTTACTGTTCCAAAAACAT+TGG + chr4_1:60556976-60556995 Msa0561110:CDS 30.0%
! GCATTTTGTTCCAATGTTTT+TGG - chr4_1:60556989-60557008 None:intergenic 30.0%
GCTTGAAATAAAACTAGTAC+TGG - chr4_1:60557130-60557149 None:intergenic 30.0%
GAACCATCTTCATCAAATAA+AGG - chr4_1:60557400-60557419 None:intergenic 30.0%
ATGATGATATGGTTTCCATA+TGG + chr4_1:60557430-60557449 Msa0561110:CDS 30.0%
TTATAGAGACCTTGATATTG+GGG + chr4_1:60557748-60557767 Msa0561110:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG + chr4_1:60553088-60553107 Msa0561110:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG - chr4_1:60553126-60553145 None:intergenic 30.0%
ATAGACAAGTATGAGCTTAG+AGG - chr4_1:60551577-60551596 None:intergenic 35.0%
!! TGAGTAAGAGGAATTGGTTT+TGG - chr4_1:60551728-60551747 None:intergenic 35.0%
ACGAGATCAATGACAACAAA+TGG - chr4_1:60551943-60551962 None:intergenic 35.0%
CATTGATCTCGTAAACTTCA+AGG + chr4_1:60551951-60551970 Msa0561110:CDS 35.0%
TAGACCATATTTACGCACTA+AGG - chr4_1:60552142-60552161 None:intergenic 35.0%
TGCTCACATTATTGATGTGA+AGG + chr4_1:60552182-60552201 Msa0561110:intron 35.0%
GCTCACATTATTGATGTGAA+GGG + chr4_1:60552183-60552202 Msa0561110:intron 35.0%
ACATTATTGATGTGAAGGGT+AGG + chr4_1:60552187-60552206 Msa0561110:intron 35.0%
TTTCTTGACAGAGAAGCAAT+GGG + chr4_1:60552210-60552229 Msa0561110:CDS 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG + chr4_1:60552226-60552245 Msa0561110:CDS 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG + chr4_1:60552237-60552256 Msa0561110:CDS 35.0%
! GTTTACTGTTGCAAAAGCAT+TGG + chr4_1:60552335-60552354 Msa0561110:CDS 35.0%
! CTACAAAGCTTGTTCACAAA+TGG + chr4_1:60552367-60552386 Msa0561110:CDS 35.0%
! TTTCAATCCTTGTTTCTTGG+AGG + chr4_1:60552489-60552508 Msa0561110:intron 35.0%
TGATAAACTCATTCCCTTGA+TGG + chr4_1:60552515-60552534 Msa0561110:CDS 35.0%
! GGAAACTTTTGTTCCATCAA+GGG - chr4_1:60552531-60552550 None:intergenic 35.0%
! AGGAAACTTTTGTTCCATCA+AGG - chr4_1:60552532-60552551 None:intergenic 35.0%
GAACAAAAGTTTCCTGAGTT+GGG + chr4_1:60552537-60552556 Msa0561110:CDS 35.0%
! TGGTCTTTGTTTCATGAAGA+TGG + chr4_1:60552750-60552769 Msa0561110:intron 35.0%
ATGATATGGTTTCCTTATGG+TGG + chr4_1:60552789-60552808 Msa0561110:CDS 35.0%
! GTTTCCTTATGGTGGAATAA+TGG + chr4_1:60552797-60552816 Msa0561110:CDS 35.0%
GTATCCATTATTCCACCATA+AGG - chr4_1:60552804-60552823 None:intergenic 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG - chr4_1:60552969-60552988 None:intergenic 35.0%
GTTTCAAAGTCTCCAAGAAT+TGG + chr4_1:60552972-60552991 Msa0561110:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG + chr4_1:60553052-60553071 Msa0561110:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG + chr4_1:60553053-60553072 Msa0561110:CDS 35.0%
TAAATAAAGGTTTAGGGGAG+TGG + chr4_1:60553283-60553302 Msa0561110:intron 35.0%
AAATAAAGGTTTAGGGGAGT+GGG + chr4_1:60553284-60553303 Msa0561110:intron 35.0%
AGGGTTAACTAGGAATATAG+GGG - chr4_1:60553615-60553634 None:intergenic 35.0%
AAAGAACGCCTATAATTAGC+CGG + chr4_1:60553663-60553682 Msa0561110:intron 35.0%
! AACTGTTACCGGCTAATTAT+AGG - chr4_1:60553674-60553693 None:intergenic 35.0%
AAAGTTGTAGCAACTGTTAC+CGG - chr4_1:60553685-60553704 None:intergenic 35.0%
TCACAATCAGAAGATGTTGA+GGG - chr4_1:60553822-60553841 None:intergenic 35.0%
TTCACAATCAGAAGATGTTG+AGG - chr4_1:60553823-60553842 None:intergenic 35.0%
AGTTGATTGTTTGTAAGGCA+AGG - chr4_1:60553879-60553898 None:intergenic 35.0%
GATGCAAATGGTGCTTAAAT+TGG - chr4_1:60553988-60554007 None:intergenic 35.0%
ATATTGATATGAACGCATCC+TGG + chr4_1:60554063-60554082 Msa0561110:intron 35.0%
! CTTCTTCGTTGGTTGAAATA+AGG + chr4_1:60554125-60554144 Msa0561110:intron 35.0%
! ATTCTGTCCAAGTACACTTT+TGG + chr4_1:60554235-60554254 Msa0561110:intron 35.0%
! AATCTCACCAAAAGTGTACT+TGG - chr4_1:60554245-60554264 None:intergenic 35.0%
TATCACAATCACACGATTAC+TGG + chr4_1:60554751-60554770 Msa0561110:intron 35.0%
ATCACAATCACACGATTACT+GGG + chr4_1:60554752-60554771 Msa0561110:intron 35.0%
TAAAAACTTGAGGGGTTATG+AGG - chr4_1:60554895-60554914 None:intergenic 35.0%
CCGTTATCATAAGTTATCGT+AGG - chr4_1:60555646-60555665 None:intergenic 35.0%
TGTAGAGAGTAAATCTACAG+CGG - chr4_1:60555800-60555819 None:intergenic 35.0%
!!! GGCATCATTTTTTGTTAGTC+TGG - chr4_1:60556194-60556213 None:intergenic 35.0%
ATAGACAAATATGAGCTTCG+AGG - chr4_1:60556215-60556234 None:intergenic 35.0%
TCATTTACCTCTTCAGCAAT+TGG + chr4_1:60556257-60556276 Msa0561110:intron 35.0%
TATCGATGTGTAAGAGGAAT+TGG - chr4_1:60556375-60556394 None:intergenic 35.0%
! GTGACAATTACAAGAGGTTT+TGG - chr4_1:60556443-60556462 None:intergenic 35.0%
! ATGGTATTGGGAACAGATTA+TGG - chr4_1:60556495-60556514 None:intergenic 35.0%
ATAATCTGTTCCCAATACCA+TGG + chr4_1:60556494-60556513 Msa0561110:intron 35.0%
ATGAGATCAATGACGACAAA+TGG - chr4_1:60556584-60556603 None:intergenic 35.0%
AGCCAAAAAAGCAAAACTCT+AGG + chr4_1:60556692-60556711 Msa0561110:CDS 35.0%
GGAACCTTAATGCGTAAATA+TGG + chr4_1:60556776-60556795 Msa0561110:intron 35.0%
GTGAGCATCAATGATGTTAT+CGG - chr4_1:60556810-60556829 None:intergenic 35.0%
TGCTCACATAATTGATGTGA+AGG + chr4_1:60556823-60556842 Msa0561110:intron 35.0%
GCTCACATAATTGATGTGAA+GGG + chr4_1:60556824-60556843 Msa0561110:intron 35.0%
ACATAATTGATGTGAAGGGT+AGG + chr4_1:60556828-60556847 Msa0561110:intron 35.0%
TTTCTTGACAGAGAAGCAAT+GGG + chr4_1:60552210-60552229 Msa0561110:CDS 35.0%
! AATGGGTGAGGATTTCTTTT+GGG + chr4_1:60556868-60556887 Msa0561110:CDS 35.0%
! AGGATTTCTTTTGGGCTATT+AGG + chr4_1:60556876-60556895 Msa0561110:CDS 35.0%
! GGATTTCTTTTGGGCTATTA+GGG + chr4_1:60556877-60556896 Msa0561110:CDS 35.0%
! GATTTCTTTTGGGCTATTAG+GGG + chr4_1:60556878-60556897 Msa0561110:CDS 35.0%
!!! GTTTTGGTGTCATAGTTTCA+TGG + chr4_1:60556915-60556934 Msa0561110:CDS 35.0%
! TGTTCACAAGTGGCAATTTT+TGG + chr4_1:60557018-60557037 Msa0561110:CDS 35.0%
AGATGAATATTGTCTGGCAA+AGG + chr4_1:60557065-60557084 Msa0561110:CDS 35.0%
GATGAATATTGTCTGGCAAA+GGG + chr4_1:60557066-60557085 Msa0561110:CDS 35.0%
!! TTTCAAGCTTTGTTTCTTGG+AGG + chr4_1:60557142-60557161 Msa0561110:intron 35.0%
TGTAGATAAACTCATACCCT+TGG + chr4_1:60557165-60557184 Msa0561110:intron 35.0%
AGAATTCCAATTCCTGAAAC+TGG + chr4_1:60557358-60557377 Msa0561110:CDS 35.0%
TCTAATCCAGTTTCAGGAAT+TGG - chr4_1:60557367-60557386 None:intergenic 35.0%
! ATTCCTGAAACTGGATTAGA+AGG + chr4_1:60557367-60557386 Msa0561110:CDS 35.0%
! AAACTGGATTAGAAGGCATA+TGG + chr4_1:60557374-60557393 Msa0561110:CDS 35.0%
! TGGCCTTTATTTGATGAAGA+TGG + chr4_1:60557394-60557413 Msa0561110:CDS 35.0%
CCATATCATCATTGCATCTT+TGG - chr4_1:60557422-60557441 None:intergenic 35.0%
CCAAAGATGCAATGATGATA+TGG + chr4_1:60557419-60557438 Msa0561110:CDS 35.0%
ATGATATGGTTTCCATATGG+TGG + chr4_1:60557433-60557452 Msa0561110:CDS 35.0%
! GTTTCCATATGGTGGAAAAA+TGG + chr4_1:60557441-60557460 Msa0561110:CDS 35.0%
!! GTATCCATTTTTCCACCATA+TGG - chr4_1:60557448-60557467 None:intergenic 35.0%
TGATTCAATACTCGGTTCAT+TGG + chr4_1:60557618-60557637 Msa0561110:intron 35.0%
TGTTATTCACCCCAATATCA+AGG - chr4_1:60557760-60557779 None:intergenic 35.0%
ATTGGGGTGAATAACATTGA+TGG + chr4_1:60557764-60557783 Msa0561110:CDS 35.0%
AACCAATTCCTCTTACTCAC+CGG + chr4_1:60551729-60551748 Msa0561110:CDS 40.0%
! AAGTGGTTTAGGTGTTGTGT+AGG - chr4_1:60551791-60551810 None:intergenic 40.0%
! GTGATGATGACAAGTGGTTT+AGG - chr4_1:60551802-60551821 None:intergenic 40.0%
! TGAATATGGGAAGGTTCTAG+AGG - chr4_1:60551826-60551845 None:intergenic 40.0%
ATGGCTGTTTGAATATGGGA+AGG - chr4_1:60551835-60551854 None:intergenic 40.0%
AGCCAAAAAAGCCGAAATCT+CGG + chr4_1:60552051-60552070 Msa0561110:CDS 40.0%
!!! AACCGAGATTTCGGCTTTTT+TGG - chr4_1:60552056-60552075 None:intergenic 40.0%
GGAACCTTAGTGCGTAAATA+TGG + chr4_1:60552135-60552154 Msa0561110:intron 40.0%
GTTTCTTGACAGAGAAGCAA+TGG + chr4_1:60552209-60552228 Msa0561110:CDS 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG + chr4_1:60552240-60552259 Msa0561110:CDS 40.0%
TCAAGTTCCATCAACTGTGA+CGG + chr4_1:60552311-60552330 Msa0561110:CDS 40.0%
TGTTCACAAATGGCAGTATG+TGG + chr4_1:60552377-60552396 Msa0561110:CDS 40.0%
GGAACAAAAGTTTCCTGAGT+TGG + chr4_1:60552536-60552555 Msa0561110:CDS 40.0%
CGCCTTTCGGAAATTGAAAA+AGG - chr4_1:60552614-60552633 None:intergenic 40.0%
GTTCTGTTAAGCAACACTTC+AGG - chr4_1:60552642-60552661 None:intergenic 40.0%
!! AGTGTTGCTTAACAGAACAC+TGG + chr4_1:60552644-60552663 Msa0561110:CDS 40.0%
! TTTCATGAAGATGGTGCCAA+AGG + chr4_1:60552759-60552778 Msa0561110:intron 40.0%
CCATATCATCATTGCACCTT+TGG - chr4_1:60552778-60552797 None:intergenic 40.0%
! CCAAAGGTGCAATGATGATA+TGG + chr4_1:60552775-60552794 Msa0561110:CDS 40.0%
GCTACAAGCAAGCTAGTATT+TGG + chr4_1:60553051-60553070 Msa0561110:CDS 40.0%
AATAAAGGTTTAGGGGAGTG+GGG + chr4_1:60553285-60553304 Msa0561110:intron 40.0%
CCAACAAGGTCTTCTTCAAT+CGG + chr4_1:60553377-60553396 Msa0561110:intron 40.0%
CAACAAGGTCTTCTTCAATC+GGG + chr4_1:60553378-60553397 Msa0561110:intron 40.0%
ATGGTGTGAAAGGGTTAACT+AGG - chr4_1:60553625-60553644 None:intergenic 40.0%
GGCTAATTATAGGCGTTCTT+TGG - chr4_1:60553664-60553683 None:intergenic 40.0%
CATAGGAGGAGATGATAAGA+GGG - chr4_1:60553929-60553948 None:intergenic 40.0%
TGTATAACTCTGACCAGCAT+AGG - chr4_1:60553946-60553965 None:intergenic 40.0%
GCAAATGGTGCTTAAATTGG+AGG - chr4_1:60553985-60554004 None:intergenic 40.0%
!!! ATGTTTTGGAGGGGTGTTAA+TGG - chr4_1:60554010-60554029 None:intergenic 40.0%
!!! TAGGTTAGCATGTTTTGGAG+GGG - chr4_1:60554019-60554038 None:intergenic 40.0%
!! CTAGGTTAGCATGTTTTGGA+GGG - chr4_1:60554020-60554039 None:intergenic 40.0%
!! TCTAGGTTAGCATGTTTTGG+AGG - chr4_1:60554021-60554040 None:intergenic 40.0%
! GTGCTGCTCATCAAAATTCT+AGG - chr4_1:60554038-60554057 None:intergenic 40.0%
AGACGTGTATGAGTATCAAG+TGG - chr4_1:60554101-60554120 None:intergenic 40.0%
GAAATAAGGCAGCATCGTTA+TGG + chr4_1:60554139-60554158 Msa0561110:intron 40.0%
!!! TGGCTTTTTAAAACCTGCCA+TGG + chr4_1:60554303-60554322 Msa0561110:intron 40.0%
! GCTCTTATAACATGTTGGCT+AGG + chr4_1:60554527-60554546 Msa0561110:intron 40.0%
ATGGTTGAACAACATGAAGG+TGG - chr4_1:60554554-60554573 None:intergenic 40.0%
!! TCTGTTTTGCAGCCTTATGT+AGG - chr4_1:60554701-60554720 None:intergenic 40.0%
TAAGGCTGCAAAACAGAGAA+AGG + chr4_1:60554704-60554723 Msa0561110:intron 40.0%
AAGGCTGCAAAACAGAGAAA+GGG + chr4_1:60554705-60554724 Msa0561110:intron 40.0%
!! TAAGAGTACCTAGATTGCTC+CGG - chr4_1:60554733-60554752 None:intergenic 40.0%
! GTTTAAGTTTCCACGTAAGG+AGG - chr4_1:60554815-60554834 None:intergenic 40.0%
! ACGGTTTAAGTTTCCACGTA+AGG - chr4_1:60554818-60554837 None:intergenic 40.0%
! TGGGTGACTCCTTTTATAGA+CGG - chr4_1:60554837-60554856 None:intergenic 40.0%
CATAGTCCAATTCAGAGACA+AGG - chr4_1:60555133-60555152 None:intergenic 40.0%
AAAGAAAGCGATCAATCGAC+TGG - chr4_1:60555280-60555299 None:intergenic 40.0%
AGTCTAAACTCTAGCACAAG+TGG + chr4_1:60555828-60555847 Msa0561110:intron 40.0%
TAAACTCTAGCACAAGTGGT+TGG + chr4_1:60555832-60555851 Msa0561110:intron 40.0%
ACAACAAACTTAGCGCTTGT+AGG - chr4_1:60555929-60555948 None:intergenic 40.0%
TAGAGTCTAAACTCTAGCAC+AGG + chr4_1:60555961-60555980 Msa0561110:intron 40.0%
AGTAGTACCAATTGCTGAAG+AGG - chr4_1:60556267-60556286 None:intergenic 40.0%
AACTATGGAGACATTGAAGG+AGG - chr4_1:60556307-60556326 None:intergenic 40.0%
! TGTGTAAGAGGAATTGGCTT+TGG - chr4_1:60556369-60556388 None:intergenic 40.0%
!! TTGGAGTATCGATGTGTAAG+AGG - chr4_1:60556381-60556400 None:intergenic 40.0%
!!! AAGAGGTTTTGGTGTTGTGT+TGG - chr4_1:60556432-60556451 None:intergenic 40.0%
! AGAGGTGTGACAATTACAAG+AGG - chr4_1:60556449-60556468 None:intergenic 40.0%
AATCTGTAGGCCATGGTATT+GGG - chr4_1:60556507-60556526 None:intergenic 40.0%
CTACAGATTCGAATTCGAAG+CGG + chr4_1:60556518-60556537 Msa0561110:intron 40.0%
AAAACTGCATGGGTTCAATC+TGG + chr4_1:60556638-60556657 Msa0561110:CDS 40.0%
GTTTCTTGACAGAGAAGCAA+TGG + chr4_1:60552209-60552228 Msa0561110:CDS 40.0%
! CAATGGGTGAGGATTTCTTT+TGG + chr4_1:60556867-60556886 Msa0561110:CDS 40.0%
! CAACAAAGCTTGTTCACAAG+TGG + chr4_1:60557008-60557027 Msa0561110:CDS 40.0%
GGAAACTTCTCTTGAACCAA+GGG - chr4_1:60557184-60557203 None:intergenic 40.0%
AGGAAACTTCTCTTGAACCA+AGG - chr4_1:60557185-60557204 None:intergenic 40.0%
! ACTTCAGGTGTAGAACCTTT+TGG - chr4_1:60557280-60557299 None:intergenic 40.0%
ATGCCTTCTAATCCAGTTTC+AGG - chr4_1:60557373-60557392 None:intergenic 40.0%
! CTTGGTGACTTCGAAACAAA+AGG - chr4_1:60557713-60557732 None:intergenic 40.0%
CTACAAGCAAGCTAGTATCT+GGG + chr4_1:60557796-60557815 Msa0561110:CDS 40.0%
TACAAGCAAGCTAGTATCTG+GGG + chr4_1:60557797-60557816 Msa0561110:CDS 40.0%
TATACCTTCTCATGTGTCCA+AGG + chr4_1:60557907-60557926 Msa0561110:CDS 40.0%
ATACCTTCTCATGTGTCCAA+GGG + chr4_1:60557908-60557927 Msa0561110:CDS 40.0%
TACCGGTGAGTAAGAGGAAT+TGG - chr4_1:60551734-60551753 None:intergenic 45.0%
!! TTTGAGTACCGGTGAGTAAG+AGG - chr4_1:60551740-60551759 None:intergenic 45.0%
! AGAGGTGTGATGATGACAAG+TGG - chr4_1:60551808-60551827 None:intergenic 45.0%
AGGATAGACCCTCAAAGTCA+TGG - chr4_1:60551906-60551925 None:intergenic 45.0%
ATGTCGAAAGCAGAACTGCT+TGG + chr4_1:60551986-60552005 Msa0561110:CDS 45.0%
TGTCGAAAGCAGAACTGCTT+GGG + chr4_1:60551987-60552006 Msa0561110:CDS 45.0%
GCTTGTCCTACAATAGGTGT+TGG + chr4_1:60552087-60552106 Msa0561110:intron 45.0%
!! TGTCCTACAATAGGTGTTGG+TGG + chr4_1:60552090-60552109 Msa0561110:intron 45.0%
TGTCCACCAACACCTATTGT+AGG - chr4_1:60552096-60552115 None:intergenic 45.0%
!! AGCATCGATCACATTATCCG+CGG - chr4_1:60552166-60552185 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG + chr4_1:60552243-60552262 Msa0561110:CDS 45.0%
GTAAACACCGTCACAGTTGA+TGG - chr4_1:60552321-60552340 None:intergenic 45.0%
ATCAACGCCTCCAAGAAACA+AGG - chr4_1:60552499-60552518 None:intergenic 45.0%
! AAAGTTTCCTGAGTTGGGTG+TGG + chr4_1:60552542-60552561 Msa0561110:CDS 45.0%
!! TTACCAGGTTGATTGGCAAC+AGG + chr4_1:60552881-60552900 Msa0561110:intron 45.0%
TATACCTTCTCTTGTGCCCA+AGG + chr4_1:60553163-60553182 Msa0561110:intron 45.0%
ATACCTTCTCTTGTGCCCAA+GGG + chr4_1:60553164-60553183 Msa0561110:intron 45.0%
CCGATTGAAGAAGACCTTGT+TGG - chr4_1:60553380-60553399 None:intergenic 45.0%
! GATTTTGCTGCGAAAACTGC+TGG + chr4_1:60553583-60553602 Msa0561110:intron 45.0%
GAAGATGTTGAGGGAGGATT+AGG - chr4_1:60553813-60553832 None:intergenic 45.0%
CAATCAGAAGATGTTGAGGG+AGG - chr4_1:60553819-60553838 None:intergenic 45.0%
GTAAGTGCGACTAATGAGTG+AGG - chr4_1:60553854-60553873 None:intergenic 45.0%
GCATAGGAGGAGATGATAAG+AGG - chr4_1:60553930-60553949 None:intergenic 45.0%
CTTATCATCTCCTCCTATGC+TGG + chr4_1:60553930-60553949 Msa0561110:intron 45.0%
ATAACTCTGACCAGCATAGG+AGG - chr4_1:60553943-60553962 None:intergenic 45.0%
! GGGGTGTTAATGGATGCAAA+TGG - chr4_1:60554000-60554019 None:intergenic 45.0%
CACGTCTTCATCTTCTTCGT+TGG + chr4_1:60554114-60554133 Msa0561110:intron 45.0%
TCTAAGTAACACTCCATGGC+AGG - chr4_1:60554319-60554338 None:intergenic 45.0%
GCGATGGTTGAACAACATGA+AGG - chr4_1:60554557-60554576 None:intergenic 45.0%
AACTGTTCCAGACTGGATCA+AGG + chr4_1:60554617-60554636 Msa0561110:intron 45.0%
AGGAGTAGGCGATCCATATT+TGG - chr4_1:60554681-60554700 None:intergenic 45.0%
! TTGCAGCCTTATGTAGGAGT+AGG - chr4_1:60554695-60554714 None:intergenic 45.0%
!! AAGAGTACCTAGATTGCTCC+GGG - chr4_1:60554732-60554751 None:intergenic 45.0%
CTGGGATTATGTGTCCGAAA+AGG + chr4_1:60554770-60554789 Msa0561110:intron 45.0%
TAAGTTTCCACGTAAGGAGG+AGG - chr4_1:60554812-60554831 None:intergenic 45.0%
AGAAAAATCCCATACCCTGC+CGG + chr4_1:60555387-60555406 Msa0561110:intron 45.0%
GCTAGAGTTTAGACTCTCGT+GGG - chr4_1:60555823-60555842 None:intergenic 45.0%
TGCTAGAGTTTAGACTCTCG+TGG - chr4_1:60555824-60555843 None:intergenic 45.0%
AGTCTAAACTCTAGCACAGG+AGG + chr4_1:60555964-60555983 Msa0561110:intron 45.0%
TAAACTCTAGCACAGGAGGT+TGG + chr4_1:60555968-60555987 Msa0561110:intron 45.0%
GAATCTGTAGGCCATGGTAT+TGG - chr4_1:60556508-60556527 None:intergenic 45.0%
GAATTCGAATCTGTAGGCCA+TGG - chr4_1:60556514-60556533 None:intergenic 45.0%
CGCTTCGAATTCGAATCTGT+AGG - chr4_1:60556520-60556539 None:intergenic 45.0%
GTTCAATCTGGTGCAACACT+TGG + chr4_1:60556650-60556669 Msa0561110:CDS 45.0%
CAGTAGGACAAACACTTGCA+GGG - chr4_1:60556721-60556740 None:intergenic 45.0%
ACAGTAGGACAAACACTTGC+AGG - chr4_1:60556722-60556741 None:intergenic 45.0%
GCAAGTGTTTGTCCTACTGT+AGG + chr4_1:60556722-60556741 Msa0561110:intron 45.0%
GTTTGTCCTACTGTAGGTGT+TGG + chr4_1:60556728-60556747 Msa0561110:intron 45.0%
! TTCTTTTGGGCTATTAGGGG+TGG + chr4_1:60556881-60556900 Msa0561110:CDS 45.0%
CAAGAGAAGTTTCCTGAGCT+TGG + chr4_1:60557190-60557209 Msa0561110:intron 45.0%
GAAGTTTCCTGAGCTTGGTT+TGG + chr4_1:60557195-60557214 Msa0561110:intron 45.0%
TCTCTAACCAAACCAAGCTC+AGG - chr4_1:60557205-60557224 None:intergenic 45.0%
!! CACCTGAAGTGTTGCTTAAC+AGG + chr4_1:60557290-60557309 Msa0561110:CDS 45.0%
GTCCTGTTAAGCAACACTTC+AGG - chr4_1:60557295-60557314 None:intergenic 45.0%
TCGGTTCATTGGCATCAAGA+AGG + chr4_1:60557629-60557648 Msa0561110:intron 45.0%
TTGGCATCAAGAAGGTGATG+AGG + chr4_1:60557637-60557656 Msa0561110:intron 45.0%
GCTACAAGCAAGCTAGTATC+TGG + chr4_1:60557795-60557814 Msa0561110:CDS 45.0%
TGCAGATTCGAACCCGTAGT+GGG + chr4_1:60551878-60551897 Msa0561110:intron 50.0%
AGAACTGCTTGGGTTCAGTC+TGG + chr4_1:60551997-60552016 Msa0561110:CDS 50.0%
GAACTGCTTGGGTTCAGTCT+GGG + chr4_1:60551998-60552017 Msa0561110:CDS 50.0%
AACTGCTTGGGTTCAGTCTG+GGG + chr4_1:60551999-60552018 Msa0561110:CDS 50.0%
CAGCTGGGAAACCGAGATTT+CGG - chr4_1:60552065-60552084 None:intergenic 50.0%
TTGTAGGACAAGCACCAGCT+GGG - chr4_1:60552080-60552099 None:intergenic 50.0%
ATTGTAGGACAAGCACCAGC+TGG - chr4_1:60552081-60552100 None:intergenic 50.0%
GCTGGTGCTTGTCCTACAAT+AGG + chr4_1:60552081-60552100 Msa0561110:CDS 50.0%
GCGTAAATATGGTCTAGCCG+CGG + chr4_1:60552146-60552165 Msa0561110:intron 50.0%
TCTCTAACCACACCCAACTC+AGG - chr4_1:60552552-60552571 None:intergenic 50.0%
ACTTCAGGCAATGCGCCTTT+CGG - chr4_1:60552627-60552646 None:intergenic 50.0%
CTTCCTGTTGCCAATCAACC+TGG - chr4_1:60552887-60552906 None:intergenic 50.0%
!! CAGGTTGATTGGCAACAGGA+AGG + chr4_1:60552885-60552904 Msa0561110:intron 50.0%
TTGGCAACAGGAAGGTGATG+AGG + chr4_1:60552893-60552912 Msa0561110:CDS 50.0%
! GGTCTAGAGCTAAGGGGTAA+TGG + chr4_1:60553306-60553325 Msa0561110:intron 50.0%
! GCTAAGGGGTAATGGCTTCA+AGG + chr4_1:60553314-60553333 Msa0561110:intron 50.0%
GGGGTTCATGAATGCAGCAT+CGG - chr4_1:60553437-60553456 None:intergenic 50.0%
GATGTTGAGGGAGGATTAGG+AGG - chr4_1:60553810-60553829 None:intergenic 50.0%
ATATGAACGCATCCTGGCAG+AGG + chr4_1:60554069-60554088 Msa0561110:intron 50.0%
! CTATGAGACCACGACTTGGA+AGG + chr4_1:60554593-60554612 Msa0561110:intron 50.0%
AACAGTTGCCTTCCAAGTCG+TGG - chr4_1:60554604-60554623 None:intergenic 50.0%
TTATTGGGCCTTCGCGCTTT+AGG - chr4_1:60554648-60554667 None:intergenic 50.0%
GGATCGCCTACTCCTACATA+AGG + chr4_1:60554686-60554705 Msa0561110:intron 50.0%
GCAAAACAGAGAAAGGGACC+CGG + chr4_1:60554711-60554730 Msa0561110:intron 50.0%
GTAAGGAGGAGGTTGTTAGG+CGG - chr4_1:60554801-60554820 None:intergenic 50.0%
CACGTAAGGAGGAGGTTGTT+AGG - chr4_1:60554804-60554823 None:intergenic 50.0%
CTAACAACCTCCTCCTTACG+TGG + chr4_1:60554802-60554821 Msa0561110:intron 50.0%
GTAAGGACGACGACCAAAGT+AGG - chr4_1:60554963-60554982 None:intergenic 50.0%
CAGATTCGAATTCGAAGCGG+CGG + chr4_1:60556521-60556540 Msa0561110:intron 50.0%
AAGACAGACCCTCAAAGTCG+TGG - chr4_1:60556547-60556566 None:intergenic 50.0%
!! TGTCCTACTGTAGGTGTTGG+TGG + chr4_1:60556731-60556750 Msa0561110:intron 50.0%
TGTCCACCAACACCTACAGT+AGG - chr4_1:60556737-60556756 None:intergenic 50.0%
!! CACTTCAGTGGTGGTGGATA+TGG + chr4_1:60556755-60556774 Msa0561110:intron 50.0%
TGACAGAGAAGCAATGGGTG+AGG + chr4_1:60552215-60552234 Msa0561110:CDS 50.0%
! TTTTGGGCTATTAGGGGTGG+TGG + chr4_1:60556884-60556903 Msa0561110:CDS 50.0%
GCATCAAGAAGGTGATGAGG+TGG + chr4_1:60557640-60557659 Msa0561110:intron 50.0%
CACTACGGGTTCGAATCTGC+AGG - chr4_1:60551879-60551898 None:intergenic 55.0%
CTGCAGATTCGAACCCGTAG+TGG + chr4_1:60551877-60551896 Msa0561110:intron 55.0%
GCAGATTCGAACCCGTAGTG+GGG + chr4_1:60551879-60551898 Msa0561110:intron 55.0%
CAGATTCGAACCCGTAGTGG+GGG + chr4_1:60551880-60551899 Msa0561110:intron 55.0%
AAAGTCATGGCCCCCACTAC+GGG - chr4_1:60551893-60551912 None:intergenic 55.0%
CAAAGTCATGGCCCCCACTA+CGG - chr4_1:60551894-60551913 None:intergenic 55.0%
TAGTGGGGGCCATGACTTTG+AGG + chr4_1:60551894-60551913 Msa0561110:CDS 55.0%
AGTGGGGGCCATGACTTTGA+GGG + chr4_1:60551895-60551914 Msa0561110:CDS 55.0%
! GTTCAGTCTGGGGCAACACT+TGG + chr4_1:60552009-60552028 Msa0561110:CDS 55.0%
CGAAATCTCGGTTTCCCAGC+TGG + chr4_1:60552063-60552082 Msa0561110:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG + chr4_1:60552102-60552121 Msa0561110:intron 55.0%
! GTTGGTGGACACTTCAGTGG+TGG + chr4_1:60552105-60552124 Msa0561110:intron 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG + chr4_1:60552246-60552265 Msa0561110:CDS 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG + chr4_1:60552258-60552277 Msa0561110:CDS 55.0%
GCAACAGGAAGGTGATGAGG+TGG + chr4_1:60552896-60552915 Msa0561110:CDS 55.0%
TGTCCCTTGGGCACAAGAGA+AGG - chr4_1:60553170-60553189 None:intergenic 55.0%
! GGAGTGGGGTCTAGAGCTAA+GGG + chr4_1:60553299-60553318 Msa0561110:intron 55.0%
! GAGTGGGGTCTAGAGCTAAG+GGG + chr4_1:60553300-60553319 Msa0561110:intron 55.0%
TGGTCTCATAGCTGGAGACG+TGG - chr4_1:60554584-60554603 None:intergenic 55.0%
CCAAGTCGTGGTCTCATAGC+TGG - chr4_1:60554592-60554611 None:intergenic 55.0%
CCAGCTATGAGACCACGACT+TGG + chr4_1:60554589-60554608 Msa0561110:intron 55.0%
GGAAGGCAACTGTTCCAGAC+TGG + chr4_1:60554610-60554629 Msa0561110:intron 55.0%
!! GGATTGGCCTTGATCCAGTC+TGG - chr4_1:60554627-60554646 None:intergenic 55.0%
AGGCCAATCCTAAAGCGCGA+AGG + chr4_1:60554637-60554656 Msa0561110:intron 55.0%
AAAGGGACCCGGAGCAATCT+AGG + chr4_1:60554722-60554741 Msa0561110:intron 55.0%
! GTTAGGCGGTTGCGCCTTTT+CGG - chr4_1:60554787-60554806 None:intergenic 55.0%
GGGATGCGGTTGTCTTTCAC+TGG - chr4_1:60554939-60554958 None:intergenic 55.0%
CAACCGCATCCCACCTACTT+TGG + chr4_1:60554947-60554966 Msa0561110:intron 55.0%
CGACCAAAGTAGGTGGGATG+CGG - chr4_1:60554953-60554972 None:intergenic 55.0%
GGACGACGACCAAAGTAGGT+GGG - chr4_1:60554959-60554978 None:intergenic 55.0%
AGGACGACGACCAAAGTAGG+TGG - chr4_1:60554960-60554979 None:intergenic 55.0%
AACAGTCCTCCCTGCTAAGC+CGG - chr4_1:60555409-60555428 None:intergenic 55.0%
!! TCTAGCACAGGAGGTTGGTG+CGG + chr4_1:60555973-60555992 Msa0561110:intron 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG + chr4_1:60552102-60552121 Msa0561110:intron 55.0%
! GTTGGTGGACACTTCAGTGG+TGG + chr4_1:60552105-60552124 Msa0561110:intron 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG + chr4_1:60552258-60552277 Msa0561110:CDS 55.0%
CGTCCCTTGGACACATGAGA+AGG - chr4_1:60557914-60557933 None:intergenic 55.0%
GGTGGACACTTCAGTGGTGG+CGG + chr4_1:60552108-60552127 Msa0561110:intron 60.0%
!! CACTTCAGTGGTGGCGGCTA+TGG + chr4_1:60552114-60552133 Msa0561110:intron 60.0%
! GGGAGTGGGGTCTAGAGCTA+AGG + chr4_1:60553298-60553317 Msa0561110:intron 60.0%
AAGTGGAACCTGCCTCTGCC+AGG - chr4_1:60554084-60554103 None:intergenic 60.0%
CTGGAGACGTGGACTTGCGA+TGG - chr4_1:60554573-60554592 None:intergenic 60.0%
!! GGGCCTTCGCGCTTTAGGAT+TGG - chr4_1:60554643-60554662 None:intergenic 60.0%
CTGCTAAGCCGGCAGGGTAT+GGG - chr4_1:60555398-60555417 None:intergenic 60.0%
!! CATACCCTGCCGGCTTAGCA+GGG + chr4_1:60555397-60555416 Msa0561110:intron 60.0%
!! CTAGCACAGGAGGTTGGTGC+GGG + chr4_1:60555974-60555993 Msa0561110:intron 60.0%
!! TAGCACAGGAGGTTGGTGCG+GGG + chr4_1:60555975-60555994 Msa0561110:intron 60.0%
GGTGGACACTTCAGTGGTGG+TGG + chr4_1:60552108-60552127 Msa0561110:intron 60.0%
! TGGGCTATTAGGGGTGGTGG+AGG + chr4_1:60556887-60556906 Msa0561110:CDS 60.0%
GAACGCATCCTGGCAGAGGC+AGG + chr4_1:60554073-60554092 Msa0561110:intron 65.0%
CCTGCTAAGCCGGCAGGGTA+TGG - chr4_1:60555399-60555418 None:intergenic 65.0%
!! CCATACCCTGCCGGCTTAGC+AGG + chr4_1:60555396-60555415 Msa0561110:intron 65.0%
TCCTCCCTGCTAAGCCGGCA+GGG - chr4_1:60555404-60555423 None:intergenic 65.0%
AAGCGGCGGCCACGACTTTG+AGG + chr4_1:60556535-60556554 Msa0561110:CDS 65.0%
AGCGGCGGCCACGACTTTGA+GGG + chr4_1:60556536-60556555 Msa0561110:CDS 65.0%
!! ACCCTGCCGGCTTAGCAGGG+AGG + chr4_1:60555400-60555419 Msa0561110:intron 70.0%
GTCCTCCCTGCTAAGCCGGC+AGG - chr4_1:60555405-60555424 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 60551568 60557940 60551568 ID=Msa0561110;Name=Msa0561110
chr4_1 mRNA 60551568 60557940 60551568 ID=Msa0561110-mRNA-1;Parent=Msa0561110;Name=Msa0561110-mRNA-1;_AED=0.16;_eAED=0.20;_QI=0|0|0|1|0.38|0.35|14|0|803
chr4_1 exon 60551568 60551810 60551568 ID=Msa0561110-mRNA-1:exon:18882;Parent=Msa0561110-mRNA-1
chr4_1 exon 60551883 60552104 60551883 ID=Msa0561110-mRNA-1:exon:18883;Parent=Msa0561110-mRNA-1
chr4_1 exon 60552122 60552147 60552122 ID=Msa0561110-mRNA-1:exon:18884;Parent=Msa0561110-mRNA-1
chr4_1 exon 60552209 60552456 60552209 ID=Msa0561110-mRNA-1:exon:18885;Parent=Msa0561110-mRNA-1
chr4_1 exon 60552511 60552757 60552511 ID=Msa0561110-mRNA-1:exon:18886;Parent=Msa0561110-mRNA-1
chr4_1 exon 60552769 60552832 60552769 ID=Msa0561110-mRNA-1:exon:18887;Parent=Msa0561110-mRNA-1
chr4_1 exon 60552888 60552994 60552888 ID=Msa0561110-mRNA-1:exon:18888;Parent=Msa0561110-mRNA-1
chr4_1 exon 60553010 60553161 60553010 ID=Msa0561110-mRNA-1:exon:18889;Parent=Msa0561110-mRNA-1
chr4_1 exon 60556273 60556451 60556273 ID=Msa0561110-mRNA-1:exon:18890;Parent=Msa0561110-mRNA-1
chr4_1 exon 60556524 60556739 60556524 ID=Msa0561110-mRNA-1:exon:18891;Parent=Msa0561110-mRNA-1
chr4_1 exon 60556763 60556788 60556763 ID=Msa0561110-mRNA-1:exon:18892;Parent=Msa0561110-mRNA-1
chr4_1 exon 60556850 60557087 60556850 ID=Msa0561110-mRNA-1:exon:18893;Parent=Msa0561110-mRNA-1
chr4_1 exon 60557274 60557476 60557274 ID=Msa0561110-mRNA-1:exon:18894;Parent=Msa0561110-mRNA-1
chr4_1 exon 60557700 60557940 60557700 ID=Msa0561110-mRNA-1:exon:18895;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60551568 60551810 60551568 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60551883 60552104 60551883 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60552122 60552147 60552122 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60552209 60552456 60552209 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60552511 60552757 60552511 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60552769 60552832 60552769 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60552888 60552994 60552888 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60553010 60553161 60553010 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60556273 60556451 60556273 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60556524 60556739 60556524 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60556763 60556788 60556763 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60556850 60557087 60556850 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60557274 60557476 60557274 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
chr4_1 CDS 60557700 60557940 60557700 ID=Msa0561110-mRNA-1:cds;Parent=Msa0561110-mRNA-1
Gene Sequence

>Msa0561110

ATGATGCCTCTAAGCTCATACTTGTCTATTGCACTTATTGCTATTTTATTTTCATATGCATCTTCTGCAATTGATACTAATACTAATGAAGATAACTTCCTTCAATGTCTTTCTAGTTATTCACATAACTCAACTTCAATCTCTAAAGTTGTGTACACCAAAACCAATTCCTCTTACTCACCGGTACTCAAATATACAACTCAAAATCTAAGATTTGCATCCTACACAACACCTAAACCACTTATTCGAACCCGTAGTGGGGGCCATGACTTTGAGGGTCTATCCTATGTTTCAGAAGTTCCATTTGTTGTCATTGATCTCGTAAACTTCAAGGAAATTGATGTAGATGTCGAAAGCAGAACTGCTTGGGTTCAGTCTGGGGCAACACTTGGTGAACTTTACTACACAATTAGCCAAAAAAGCCGAAATCTCGGTTTCCCAGCTGGTGCTTGTCCTACAATAGGTTGGTGGCGGCTATGGAACCTTAGTGCGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTGCAAAAGCATTGGAGCAAAATGCTACAAAGCTTGTTCACAAATGGCAGTATGTGGCAAGTAAAATTGATGAAAACATAGCCATCAATATTGTCTTTCAAAGGATAAATTCAAGCGTTGATAAACTCATTCCCTTGATGGAACAAAAGTTTCCTGAGTTGGGTGTGGTTAGAGAAAATTGTATTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCAATTTCCGAAAGGCGCATTGCCTGAAGTGTTGCTTAACAGAACACTGGCTGCAAACAGCCCAAGATTTATTTACAAAGCAAAATCTGATTTTGTGAAAACTCCTATTCCTGAAAATGGATTAGAAGGAATATGGTCTTTATGGTGCCAAAGGTGCAATGATGATATGGTTTCCTTATGGTGGAATAATGGATACTATTTCAGAGTTGATTGGCAACAGGAAGGTGATGAGGTGGAAAAACTGCACATTAATTGGATTAGAAAAATTTATAATTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAATTGGAGACCTTGATATTGGTGTGAATAACATTGATGGTTACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAGACAATTGGTACTACTACTAATGAAGATAATAACCTCCTTCAATGTCTCCATAGTTATTCACATAACTCAACTTCAATCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACACATCGATACTCCAATTCTCAACTCAAAATCTCAGATTTGCAACCAACACAACACCAAAACCTCTTATTCGAATTCGAAGCGGCGGCCACGACTTTGAGGGTCTGTCTTATGTCTCTGAAGTTCCATTTGTCGTCATTGATCTCATAAACTTCAGAGAAATTGAAATAAATGTACACAAAAAAACTGCATGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACGCAATTAGCCAAAAAAGCAAAACTCTAGGTTTCCCTGCAAGTGTTTGTCCTACTTGGTGGTGGATATGGAACCTTAATGCGTTTCTTGACAGAGAAGCAATGGGTGAGGATTTCTTTTGGGCTATTAGGGGTGGTGGAGGAGCAAGTTTTGGTGTCATAGTTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAATTGTTACTGTGTTTACTGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTGTTCACAAGTGGCAATTTTTGGCAAGTAAACTTGATGAAAATATAGAGATGAATATTGTCTGGCAAAGGTTTCCAAAAGGTTCTACACCTGAAGTGTTGCTTAACAGGACACAAGCTACACTTGATATTTTCAAAGCAAAATCTGATTTTGTGAGAATTCCAATTCCTGAAACTGGATTAGAAGGCATATGGCCTTTATTTGATGAAGATGGTTCCAAAGATGCAATGATGATATGGTTTCCATATGGTGGAAAAATGGATACTATTTCAGATTATATGGAACCTTTTGTTTCGAAGTCACCAAGAGCTGCATATATTAATTATAGAGACCTTGATATTGGGGTGAATAACATTGATGGATACACAAGCTACAAGCAAGCTAGTATCTGGGGTGTTAAATACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAAAGTATACCTTCTCATGTGTCCAAGGGACGCAAATAG
Protein sequence

>Msa0561110

MMPLSSYLSIALIAILFSYASSAIDTNTNEDNFLQCLSSYSHNSTSISKVVYTKTNSSYSPVLKYTTQNLRFASYTTPKPLIRTRSGGHDFEGLSYVSEVPFVVIDLVNFKEIDVDVESRTAWVQSGATLGELYYTISQKSRNLGFPAGACPTIGWWRLWNLSAFLDREAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSTVTVFTVAKALEQNATKLVHKWQYVASKIDENIAINIVFQRINSSVDKLIPLMEQKFPELGVVRENCIEMSWIESVLYLFQFPKGALPEVLLNRTLAANSPRFIYKAKSDFVKTPIPENGLEGIWSLWCQRCNDDMVSLWWNNGYYFRVDWQQEGDEVEKLHINWIRKIYNYMEPFVSKSPRIGDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQTIGTTTNEDNNLLQCLHSYSHNSTSISEVVYTKANSSYTSILQFSTQNLRFATNTTPKPLIRIRSGGHDFEGLSYVSEVPFVVIDLINFREIEINVHKKTAWVQSGATLGELYYAISQKSKTLGFPASVCPTWWWIWNLNAFLDREAMGEDFFWAIRGGGGASFGVIVSWKIKLVQVPSIVTVFTVPKTLEQNATKLVHKWQFLASKLDENIEMNIVWQRFPKGSTPEVLLNRTQATLDIFKAKSDFVRIPIPETGLEGIWPLFDEDGSKDAMMIWFPYGGKMDTISDYMEPFVSKSPRAAYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK*