Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156190 | XP_013467077.1 | 96.730 | 581 | 19 | 0 | 1 | 581 | 3 | 583 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156190 | sp|Q9FNL7|PTR3_ARATH | 62.414 | 580 | 206 | 4 | 6 | 576 | 6 | 582 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156190 | A0A072VH07 | 96.730 | 581 | 19 | 0 | 1 | 581 | 3 | 583 | 0.0 | 1156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021460 | Msa0156190 | 0.870035 | 1.978074e-66 | -8.615850e-47 |
| Msa0033340 | Msa0156190 | 0.805095 | 1.574771e-49 | -8.615850e-47 |
| Msa0109970 | Msa0156190 | 0.967816 | 8.401797e-128 | -8.615850e-47 |
| Msa0109990 | Msa0156190 | 0.876650 | 1.179854e-68 | -8.615850e-47 |
| Msa0142230 | Msa0156190 | 0.920302 | 1.520323e-87 | -8.615850e-47 |
| Msa0156170 | Msa0156190 | 0.966302 | 9.702021e-126 | -8.615850e-47 |
| Msa0156190 | Msa0193010 | 0.839563 | 1.469923e-57 | -8.615850e-47 |
| Msa0156190 | Msa0235190 | 0.810145 | 1.333129e-50 | -8.615850e-47 |
| Msa0156190 | Msa0284810 | 0.802002 | 6.897223e-49 | -8.615850e-47 |
| Msa0156190 | Msa0331430 | 0.805401 | 1.359167e-49 | -8.615850e-47 |
| Msa0156190 | Msa0533430 | 0.808381 | 3.185010e-50 | -8.615850e-47 |
| Msa0156190 | Msa0580610 | 0.801556 | 8.517942e-49 | -8.615850e-47 |
| Msa0156190 | Msa0754180 | 0.801232 | 9.921888e-49 | -8.615850e-47 |
| Msa0156190 | Msa0818010 | 0.858765 | 6.580929e-63 | -8.615850e-47 |
| Msa0156190 | Msa0818030 | 0.828619 | 8.128484e-55 | -8.615850e-47 |
| Msa0156190 | Msa1006250 | 0.806610 | 7.564883e-50 | -8.615850e-47 |
| Msa0156190 | Msa1009270 | 0.800229 | 1.589835e-48 | -8.615850e-47 |
| Msa0156190 | Msa1048490 | 0.808424 | 3.118395e-50 | -8.615850e-47 |
| Msa0156190 | Msa1048610 | 0.801222 | 9.969892e-49 | -8.615850e-47 |
| Msa0156190 | Msa1406600 | 0.873847 | 1.070163e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156190 | MtrunA17_Chr1g0166741 | 96.730 | 581 | 19 | 0 | 1 | 581 | 3 | 583 | 0.0 | 1156 |
| Msa0156190 | MtrunA17_Chr1g0166791 | 81.271 | 582 | 99 | 2 | 1 | 575 | 3 | 581 | 0.0 | 988 |
| Msa0156190 | MtrunA17_Chr1g0166771 | 89.815 | 540 | 55 | 0 | 39 | 578 | 5 | 544 | 0.0 | 980 |
| Msa0156190 | MtrunA17_Chr1g0187241 | 68.750 | 592 | 172 | 5 | 1 | 581 | 1 | 590 | 0.0 | 858 |
| Msa0156190 | MtrunA17_Chr1g0166711 | 71.747 | 584 | 157 | 2 | 1 | 577 | 1 | 583 | 0.0 | 848 |
| Msa0156190 | MtrunA17_Chr7g0261811 | 56.995 | 579 | 238 | 4 | 8 | 577 | 10 | 586 | 0.0 | 702 |
| Msa0156190 | MtrunA17_Chr7g0261881 | 56.747 | 578 | 239 | 4 | 8 | 576 | 10 | 585 | 0.0 | 698 |
| Msa0156190 | MtrunA17_Chr7g0261791 | 56.973 | 588 | 240 | 5 | 2 | 579 | 6 | 590 | 0.0 | 696 |
| Msa0156190 | MtrunA17_Chr7g0261771 | 56.110 | 581 | 244 | 5 | 8 | 579 | 14 | 592 | 0.0 | 694 |
| Msa0156190 | MtrunA17_Chr1g0166731 | 72.495 | 469 | 121 | 2 | 111 | 572 | 8 | 475 | 0.0 | 676 |
| Msa0156190 | MtrunA17_Chr7g0261851 | 55.763 | 590 | 250 | 4 | 1 | 581 | 4 | 591 | 0.0 | 667 |
| Msa0156190 | MtrunA17_Chr7g0261661 | 55.462 | 476 | 201 | 5 | 113 | 579 | 1 | 474 | 0.0 | 548 |
| Msa0156190 | MtrunA17_Chr3g0114501 | 47.703 | 566 | 282 | 5 | 8 | 563 | 5 | 566 | 0.0 | 537 |
| Msa0156190 | MtrunA17_Chr7g0261751 | 51.600 | 500 | 195 | 6 | 8 | 462 | 14 | 511 | 0.0 | 526 |
| Msa0156190 | MtrunA17_Chr8g0375291 | 42.478 | 565 | 306 | 4 | 2 | 550 | 13 | 574 | 1.47e-169 | 494 |
| Msa0156190 | MtrunA17_Chr8g0375311 | 41.856 | 571 | 313 | 4 | 1 | 555 | 12 | 579 | 3.83e-169 | 493 |
| Msa0156190 | MtrunA17_Chr3g0104011 | 43.106 | 573 | 307 | 7 | 1 | 561 | 1 | 566 | 2.22e-164 | 480 |
| Msa0156190 | MtrunA17_Chr7g0241741 | 41.519 | 566 | 315 | 5 | 10 | 564 | 7 | 567 | 6.71e-160 | 469 |
| Msa0156190 | MtrunA17_Chr8g0375351 | 39.652 | 575 | 320 | 6 | 1 | 555 | 12 | 579 | 1.86e-158 | 466 |
| Msa0156190 | MtrunA17_Chr8g0375341 | 38.879 | 571 | 330 | 4 | 1 | 555 | 12 | 579 | 7.26e-157 | 461 |
| Msa0156190 | MtrunA17_Chr4g0005901 | 41.373 | 568 | 313 | 6 | 2 | 558 | 13 | 571 | 4.70e-156 | 459 |
| Msa0156190 | MtrunA17_Chr8g0375321 | 39.894 | 564 | 316 | 5 | 8 | 555 | 20 | 576 | 6.66e-155 | 456 |
| Msa0156190 | MtrunA17_Chr8g0375331 | 40.248 | 564 | 314 | 5 | 8 | 555 | 7 | 563 | 2.70e-153 | 452 |
| Msa0156190 | MtrunA17_Chr7g0261731 | 59.467 | 338 | 134 | 2 | 8 | 344 | 14 | 349 | 1.20e-151 | 440 |
| Msa0156190 | MtrunA17_Chr7g0240381 | 40.426 | 564 | 318 | 10 | 9 | 567 | 13 | 563 | 1.16e-145 | 432 |
| Msa0156190 | MtrunA17_Chr3g0112671 | 39.748 | 556 | 321 | 9 | 8 | 559 | 16 | 561 | 4.58e-144 | 429 |
| Msa0156190 | MtrunA17_Chr3g0112611 | 39.107 | 560 | 321 | 8 | 8 | 555 | 15 | 566 | 2.35e-143 | 427 |
| Msa0156190 | MtrunA17_Chr8g0375361 | 38.220 | 573 | 336 | 4 | 1 | 558 | 12 | 581 | 2.74e-143 | 427 |
| Msa0156190 | MtrunA17_Chr4g0008651 | 38.298 | 564 | 332 | 9 | 9 | 563 | 18 | 574 | 2.56e-137 | 412 |
| Msa0156190 | MtrunA17_Chr3g0142101 | 37.722 | 562 | 332 | 9 | 2 | 555 | 12 | 563 | 4.62e-136 | 408 |
| Msa0156190 | MtrunA17_Chr3g0142091 | 38.368 | 576 | 339 | 8 | 2 | 569 | 3 | 570 | 4.33e-135 | 405 |
| Msa0156190 | MtrunA17_Chr3g0077151 | 38.475 | 564 | 297 | 9 | 11 | 558 | 14 | 543 | 2.72e-131 | 395 |
| Msa0156190 | MtrunA17_Chr4g0014871 | 37.050 | 556 | 316 | 8 | 13 | 556 | 18 | 551 | 5.15e-128 | 387 |
| Msa0156190 | MtrunA17_Chr4g0014841 | 37.634 | 558 | 311 | 8 | 11 | 556 | 15 | 547 | 2.79e-127 | 385 |
| Msa0156190 | MtrunA17_Chr4g0014791 | 38.489 | 556 | 305 | 8 | 13 | 556 | 17 | 547 | 3.01e-127 | 384 |
| Msa0156190 | MtrunA17_Chr4g0014781 | 37.297 | 555 | 315 | 8 | 13 | 556 | 17 | 549 | 3.84e-127 | 384 |
| Msa0156190 | MtrunA17_Chr4g0014801 | 37.838 | 555 | 312 | 8 | 13 | 556 | 17 | 549 | 3.11e-125 | 379 |
| Msa0156190 | MtrunA17_Chr5g0399061 | 36.063 | 574 | 342 | 7 | 17 | 574 | 19 | 583 | 5.37e-125 | 380 |
| Msa0156190 | MtrunA17_Chr5g0400371 | 35.169 | 563 | 350 | 4 | 9 | 557 | 96 | 657 | 2.05e-124 | 381 |
| Msa0156190 | MtrunA17_Chr5g0399071 | 37.937 | 572 | 333 | 7 | 17 | 569 | 17 | 585 | 4.01e-124 | 377 |
| Msa0156190 | MtrunA17_Chr5g0422881 | 35.081 | 553 | 344 | 5 | 19 | 558 | 14 | 564 | 1.70e-122 | 373 |
| Msa0156190 | MtrunA17_Chr1g0213711 | 34.347 | 559 | 358 | 5 | 5 | 557 | 1 | 556 | 2.82e-122 | 373 |
| Msa0156190 | MtrunA17_Chr7g0255621 | 34.912 | 570 | 344 | 7 | 2 | 555 | 4 | 562 | 8.37e-122 | 372 |
| Msa0156190 | MtrunA17_Chr4g0056431 | 38.283 | 559 | 326 | 5 | 17 | 558 | 17 | 573 | 5.17e-121 | 370 |
| Msa0156190 | MtrunA17_Chr4g0054891 | 34.111 | 557 | 357 | 4 | 8 | 555 | 93 | 648 | 1.03e-120 | 371 |
| Msa0156190 | MtrunA17_Chr7g0255601 | 34.007 | 594 | 372 | 6 | 1 | 578 | 3 | 592 | 3.96e-120 | 368 |
| Msa0156190 | MtrunA17_Chr5g0439381 | 37.993 | 558 | 327 | 6 | 13 | 563 | 16 | 561 | 1.88e-119 | 365 |
| Msa0156190 | MtrunA17_Chr7g0218851 | 34.829 | 557 | 354 | 5 | 18 | 567 | 39 | 593 | 1.41e-118 | 364 |
| Msa0156190 | MtrunA17_Chr7g0214461 | 34.312 | 545 | 349 | 5 | 29 | 567 | 82 | 623 | 1.55e-118 | 364 |
| Msa0156190 | MtrunA17_Chr7g0217461 | 34.342 | 562 | 349 | 5 | 11 | 555 | 10 | 568 | 2.03e-118 | 363 |
| Msa0156190 | MtrunA17_Chr8g0353031 | 38.364 | 550 | 298 | 8 | 26 | 555 | 19 | 547 | 2.70e-117 | 359 |
| Msa0156190 | MtrunA17_Chr4g0063591 | 38.028 | 568 | 327 | 6 | 1 | 555 | 1 | 556 | 1.70e-116 | 357 |
| Msa0156190 | MtrunA17_Chr7g0255611 | 34.087 | 575 | 353 | 9 | 1 | 555 | 3 | 571 | 3.36e-115 | 355 |
| Msa0156190 | MtrunA17_Chr2g0284701 | 34.790 | 572 | 349 | 7 | 13 | 560 | 19 | 590 | 1.47e-112 | 348 |
| Msa0156190 | MtrunA17_Chr7g0214731 | 33.333 | 594 | 376 | 8 | 6 | 579 | 40 | 633 | 6.60e-110 | 342 |
| Msa0156190 | MtrunA17_Chr5g0415791 | 33.972 | 574 | 348 | 6 | 25 | 575 | 29 | 594 | 2.74e-108 | 337 |
| Msa0156190 | MtrunA17_Chr4g0011041 | 31.986 | 569 | 367 | 8 | 2 | 555 | 15 | 578 | 1.49e-106 | 332 |
| Msa0156190 | MtrunA17_Chr5g0415961 | 33.803 | 568 | 351 | 6 | 13 | 560 | 12 | 574 | 5.26e-105 | 328 |
| Msa0156190 | MtrunA17_Chr2g0276751 | 32.530 | 581 | 374 | 8 | 1 | 576 | 14 | 581 | 2.69e-104 | 326 |
| Msa0156190 | MtrunA17_Chr3g0133341 | 32.965 | 543 | 345 | 6 | 24 | 555 | 13 | 547 | 1.22e-101 | 319 |
| Msa0156190 | MtrunA17_Chr4g0011471 | 33.461 | 523 | 332 | 5 | 46 | 555 | 37 | 556 | 8.82e-99 | 311 |
| Msa0156190 | MtrunA17_Chr8g0362711 | 32.337 | 569 | 353 | 7 | 14 | 559 | 13 | 572 | 9.87e-99 | 311 |
| Msa0156190 | MtrunA17_Chr4g0060001 | 31.911 | 586 | 371 | 10 | 1 | 562 | 1 | 582 | 8.02e-95 | 302 |
| Msa0156190 | MtrunA17_Chr7g0271221 | 31.418 | 557 | 370 | 6 | 12 | 564 | 4 | 552 | 8.14e-95 | 301 |
| Msa0156190 | MtrunA17_Chr4g0014861 | 36.667 | 420 | 246 | 5 | 148 | 556 | 16 | 426 | 2.53e-94 | 295 |
| Msa0156190 | MtrunA17_Chr3g0082631 | 35.294 | 493 | 254 | 8 | 109 | 569 | 11 | 470 | 3.38e-94 | 296 |
| Msa0156190 | MtrunA17_Chr8g0379971 | 33.672 | 591 | 344 | 13 | 13 | 560 | 8 | 593 | 2.20e-93 | 298 |
| Msa0156190 | MtrunA17_Chr1g0193391 | 30.488 | 574 | 380 | 9 | 6 | 572 | 1 | 562 | 3.59e-93 | 298 |
| Msa0156190 | MtrunA17_Chr7g0240271 | 30.137 | 584 | 391 | 6 | 8 | 576 | 7 | 588 | 3.38e-92 | 295 |
| Msa0156190 | MtrunA17_Chr4g0059981 | 30.471 | 594 | 378 | 8 | 5 | 567 | 1 | 590 | 3.26e-91 | 293 |
| Msa0156190 | MtrunA17_Chr4g0059991 | 33.029 | 548 | 341 | 8 | 30 | 555 | 27 | 570 | 4.18e-91 | 292 |
| Msa0156190 | MtrunA17_Chr4g0059971 | 31.826 | 553 | 346 | 8 | 30 | 558 | 39 | 584 | 5.13e-91 | 292 |
| Msa0156190 | MtrunA17_Chr8g0362781 | 30.309 | 551 | 364 | 5 | 24 | 555 | 29 | 578 | 4.43e-89 | 286 |
| Msa0156190 | MtrunA17_Chr8g0390331 | 29.776 | 581 | 380 | 8 | 19 | 581 | 9 | 579 | 1.25e-88 | 285 |
| Msa0156190 | MtrunA17_Chr7g0240281 | 33.096 | 562 | 358 | 9 | 12 | 556 | 10 | 570 | 4.91e-88 | 284 |
| Msa0156190 | MtrunA17_Chr4g0069581 | 31.589 | 535 | 356 | 5 | 42 | 572 | 3 | 531 | 6.88e-87 | 280 |
| Msa0156190 | MtrunA17_Chr1g0157601 | 30.965 | 549 | 343 | 11 | 29 | 555 | 19 | 553 | 1.89e-85 | 276 |
| Msa0156190 | MtrunA17_Chr8g0362801 | 32.762 | 467 | 295 | 6 | 113 | 562 | 1 | 465 | 3.47e-82 | 265 |
| Msa0156190 | MtrunA17_Chr8g0379991 | 30.823 | 571 | 334 | 10 | 46 | 560 | 1 | 566 | 5.72e-81 | 265 |
| Msa0156190 | MtrunA17_Chr6g0451841 | 30.287 | 558 | 329 | 12 | 32 | 560 | 12 | 538 | 7.22e-81 | 264 |
| Msa0156190 | MtrunA17_Chr1g0147631 | 30.254 | 552 | 352 | 9 | 25 | 555 | 25 | 564 | 4.46e-79 | 260 |
| Msa0156190 | MtrunA17_Chr1g0157611 | 28.924 | 567 | 371 | 10 | 24 | 570 | 15 | 569 | 1.41e-75 | 250 |
| Msa0156190 | MtrunA17_Chr2g0331471 | 31.023 | 577 | 356 | 15 | 25 | 574 | 88 | 649 | 1.62e-75 | 253 |
| Msa0156190 | MtrunA17_Chr4g0003761 | 29.181 | 562 | 371 | 12 | 29 | 572 | 34 | 586 | 2.72e-75 | 251 |
| Msa0156190 | MtrunA17_Chr2g0331521 | 26.460 | 582 | 390 | 11 | 25 | 579 | 22 | 592 | 1.32e-73 | 246 |
| Msa0156190 | MtrunA17_Chr2g0331511 | 29.517 | 559 | 349 | 15 | 25 | 555 | 21 | 562 | 2.63e-73 | 246 |
| Msa0156190 | MtrunA17_Chr2g0331481 | 31.023 | 577 | 355 | 16 | 25 | 574 | 26 | 586 | 4.06e-73 | 246 |
| Msa0156190 | MtrunA17_Chr1g0157621 | 29.468 | 526 | 346 | 10 | 46 | 555 | 1 | 517 | 1.01e-72 | 243 |
| Msa0156190 | MtrunA17_Chr7g0235521 | 32.174 | 460 | 295 | 6 | 113 | 557 | 1 | 458 | 3.11e-72 | 239 |
| Msa0156190 | MtrunA17_Chr2g0325951 | 26.978 | 556 | 380 | 7 | 13 | 555 | 2 | 544 | 5.80e-72 | 240 |
| Msa0156190 | MtrunA17_Chr7g0240181 | 32.174 | 460 | 295 | 6 | 113 | 557 | 1 | 458 | 2.10e-71 | 237 |
| Msa0156190 | MtrunA17_Chr7g0240211 | 32.174 | 460 | 295 | 6 | 113 | 557 | 1 | 458 | 2.24e-71 | 237 |
| Msa0156190 | MtrunA17_Chr7g0240131 | 31.957 | 460 | 296 | 6 | 113 | 557 | 1 | 458 | 3.82e-71 | 236 |
| Msa0156190 | MtrunA17_Chr7g0261721 | 51.613 | 217 | 94 | 3 | 372 | 581 | 8 | 220 | 1.14e-69 | 224 |
| Msa0156190 | MtrunA17_Chr3g0142111 | 37.013 | 308 | 188 | 3 | 2 | 307 | 23 | 326 | 4.27e-69 | 226 |
| Msa0156190 | MtrunA17_Chr2g0326211 | 27.778 | 558 | 373 | 10 | 13 | 555 | 2 | 544 | 2.22e-67 | 228 |
| Msa0156190 | MtrunA17_Chr2g0325961 | 27.886 | 563 | 367 | 10 | 13 | 555 | 2 | 545 | 6.01e-67 | 227 |
| Msa0156190 | MtrunA17_Chr5g0415841 | 31.020 | 461 | 295 | 8 | 113 | 555 | 1 | 456 | 7.50e-67 | 224 |
| Msa0156190 | MtrunA17_Chr7g0240151 | 31.087 | 460 | 282 | 7 | 113 | 557 | 1 | 440 | 9.03e-66 | 221 |
| Msa0156190 | MtrunA17_Chr2g0331461 | 28.993 | 576 | 375 | 14 | 25 | 578 | 26 | 589 | 1.60e-63 | 220 |
| Msa0156190 | MtrunA17_Chr1g0177591 | 28.051 | 549 | 361 | 14 | 25 | 560 | 42 | 569 | 3.44e-63 | 218 |
| Msa0156190 | MtrunA17_Chr7g0234381 | 31.556 | 450 | 272 | 7 | 110 | 555 | 1 | 418 | 1.24e-61 | 209 |
| Msa0156190 | MtrunA17_Chr3g0112631 | 37.868 | 272 | 156 | 5 | 300 | 559 | 3 | 273 | 1.34e-61 | 205 |
| Msa0156190 | MtrunA17_Chr7g0234151 | 31.111 | 450 | 274 | 7 | 110 | 555 | 1 | 418 | 2.23e-59 | 203 |
| Msa0156190 | MtrunA17_Chr7g0234181 | 31.222 | 442 | 274 | 7 | 115 | 555 | 1 | 413 | 6.75e-57 | 196 |
| Msa0156190 | MtrunA17_Chr1g0177611 | 28.979 | 421 | 279 | 9 | 151 | 560 | 29 | 440 | 1.01e-53 | 189 |
| Msa0156190 | MtrunA17_Chr1g0166721 | 63.846 | 130 | 42 | 1 | 1 | 130 | 1 | 125 | 4.13e-53 | 177 |
| Msa0156190 | MtrunA17_Chr3g0142121 | 37.743 | 257 | 156 | 4 | 301 | 555 | 11 | 265 | 9.91e-52 | 179 |
| Msa0156190 | MtrunA17_Chr1g0177631 | 28.810 | 420 | 281 | 8 | 151 | 560 | 29 | 440 | 2.97e-51 | 182 |
| Msa0156190 | MtrunA17_Chr4g0060071 | 33.110 | 299 | 183 | 4 | 270 | 555 | 1 | 295 | 4.79e-47 | 167 |
| Msa0156190 | MtrunA17_Chr7g0261671 | 66.019 | 103 | 35 | 0 | 8 | 110 | 15 | 117 | 4.26e-44 | 152 |
| Msa0156190 | MtrunA17_Chr7g0261831 | 48.718 | 156 | 76 | 3 | 255 | 408 | 1 | 154 | 1.25e-43 | 155 |
| Msa0156190 | MtrunA17_Chr3g0112651 | 42.941 | 170 | 92 | 2 | 111 | 280 | 20 | 184 | 2.87e-38 | 140 |
| Msa0156190 | MtrunA17_Chr1g0147591 | 32.000 | 200 | 120 | 4 | 149 | 338 | 3 | 196 | 2.83e-27 | 109 |
| Msa0156190 | MtrunA17_Chr7g0261821 | 61.194 | 67 | 26 | 0 | 496 | 562 | 1 | 67 | 3.32e-23 | 93.2 |
| Msa0156190 | MtrunA17_Chr4g0014851 | 41.837 | 98 | 57 | 0 | 13 | 110 | 18 | 115 | 4.44e-23 | 96.3 |
| Msa0156190 | MtrunA17_Chr3g0112661 | 41.584 | 101 | 59 | 0 | 10 | 110 | 16 | 116 | 1.01e-21 | 91.7 |
| Msa0156190 | MtrunA17_Chr4g0060061 | 35.537 | 121 | 78 | 0 | 138 | 258 | 8 | 128 | 1.39e-20 | 88.2 |
| Msa0156190 | MtrunA17_Chr2g0326221 | 26.316 | 228 | 145 | 5 | 329 | 555 | 15 | 220 | 4.35e-16 | 77.8 |
| Msa0156190 | MtrunA17_Chr8g0362791 | 40.698 | 86 | 51 | 0 | 30 | 115 | 41 | 126 | 1.46e-15 | 73.9 |
| Msa0156190 | MtrunA17_Chr3g0082621 | 47.761 | 67 | 35 | 0 | 44 | 110 | 5 | 71 | 1.00e-14 | 70.1 |
| Msa0156190 | MtrunA17_Chr4g0060051 | 34.906 | 106 | 66 | 1 | 1 | 106 | 1 | 103 | 1.45e-14 | 70.9 |
| Msa0156190 | MtrunA17_Chr7g0261841 | 53.704 | 54 | 24 | 1 | 113 | 165 | 1 | 54 | 7.59e-13 | 64.3 |
| Msa0156190 | MtrunA17_Chr1g0166761 | 78.947 | 38 | 7 | 1 | 1 | 38 | 3 | 39 | 7.53e-12 | 61.2 |
| Msa0156190 | MtrunA17_Chr7g0240221 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.12e-11 | 60.5 |
| Msa0156190 | MtrunA17_Chr7g0240191 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.12e-11 | 60.5 |
| Msa0156190 | MtrunA17_Chr7g0240161 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.12e-11 | 60.5 |
| Msa0156190 | MtrunA17_Chr7g0240141 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.76e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156190 | AT5G46050.1 | 62.414 | 580 | 206 | 4 | 6 | 576 | 6 | 582 | 0.0 | 722 |
| Msa0156190 | AT5G46040.1 | 60.696 | 575 | 214 | 4 | 6 | 571 | 6 | 577 | 0.0 | 685 |
| Msa0156190 | AT5G46050.2 | 60.677 | 473 | 174 | 4 | 113 | 576 | 1 | 470 | 0.0 | 562 |
| Msa0156190 | AT2G40460.1 | 48.393 | 560 | 271 | 5 | 10 | 560 | 7 | 557 | 0.0 | 538 |
| Msa0156190 | AT3G54140.1 | 42.882 | 576 | 310 | 6 | 1 | 564 | 1 | 569 | 4.01e-169 | 493 |
| Msa0156190 | AT3G54140.2 | 42.882 | 576 | 310 | 6 | 1 | 564 | 1 | 569 | 4.01e-169 | 493 |
| Msa0156190 | AT5G01180.2 | 42.077 | 568 | 312 | 5 | 10 | 565 | 8 | 570 | 1.15e-159 | 468 |
| Msa0156190 | AT5G01180.3 | 42.077 | 568 | 312 | 5 | 10 | 565 | 8 | 570 | 1.15e-159 | 468 |
| Msa0156190 | AT5G01180.1 | 42.077 | 568 | 312 | 5 | 10 | 565 | 8 | 570 | 1.15e-159 | 468 |
| Msa0156190 | AT2G02040.1 | 39.826 | 575 | 327 | 5 | 1 | 559 | 12 | 583 | 2.85e-159 | 468 |
| Msa0156190 | AT1G62200.1 | 41.209 | 546 | 315 | 2 | 11 | 551 | 36 | 580 | 5.36e-156 | 460 |
| Msa0156190 | AT1G62200.2 | 39.130 | 575 | 315 | 3 | 11 | 551 | 36 | 609 | 1.52e-149 | 444 |
| Msa0156190 | AT1G62200.3 | 39.130 | 575 | 315 | 3 | 11 | 551 | 50 | 623 | 2.42e-149 | 444 |
| Msa0156190 | AT3G53960.1 | 39.791 | 573 | 325 | 8 | 8 | 568 | 18 | 582 | 8.32e-145 | 431 |
| Msa0156190 | AT2G37900.1 | 39.020 | 551 | 323 | 6 | 8 | 553 | 19 | 561 | 9.61e-144 | 428 |
| Msa0156190 | AT2G02020.1 | 38.298 | 564 | 296 | 7 | 1 | 550 | 13 | 538 | 2.38e-140 | 418 |
| Msa0156190 | AT1G12110.1 | 38.600 | 557 | 327 | 5 | 17 | 560 | 17 | 571 | 9.99e-130 | 392 |
| Msa0156190 | AT3G54450.1 | 36.757 | 555 | 315 | 8 | 22 | 558 | 6 | 542 | 1.26e-129 | 391 |
| Msa0156190 | AT2G37900.2 | 39.425 | 487 | 282 | 6 | 72 | 553 | 4 | 482 | 2.17e-124 | 375 |
| Msa0156190 | AT1G32450.1 | 35.802 | 567 | 344 | 7 | 7 | 555 | 17 | 581 | 1.67e-121 | 372 |
| Msa0156190 | AT1G72140.1 | 36.014 | 572 | 319 | 8 | 2 | 556 | 9 | 550 | 4.34e-119 | 364 |
| Msa0156190 | AT2G26690.1 | 36.607 | 560 | 334 | 5 | 8 | 555 | 5 | 555 | 5.37e-118 | 362 |
| Msa0156190 | AT1G22540.1 | 36.216 | 555 | 323 | 8 | 15 | 558 | 18 | 552 | 4.72e-117 | 358 |
| Msa0156190 | AT4G21680.1 | 34.568 | 567 | 341 | 7 | 11 | 555 | 12 | 570 | 3.10e-114 | 352 |
| Msa0156190 | AT1G68570.1 | 36.832 | 543 | 325 | 5 | 29 | 555 | 25 | 565 | 7.03e-114 | 352 |
| Msa0156190 | AT1G22550.1 | 35.478 | 575 | 332 | 10 | 2 | 558 | 6 | 559 | 1.55e-113 | 350 |
| Msa0156190 | AT1G68570.2 | 37.170 | 530 | 315 | 5 | 42 | 555 | 8 | 535 | 3.26e-113 | 349 |
| Msa0156190 | AT5G19640.1 | 34.735 | 547 | 335 | 8 | 28 | 566 | 60 | 592 | 6.67e-113 | 350 |
| Msa0156190 | AT1G59740.1 | 33.512 | 561 | 368 | 4 | 9 | 564 | 23 | 583 | 2.98e-112 | 347 |
| Msa0156190 | AT2G26690.2 | 37.072 | 526 | 310 | 5 | 42 | 555 | 6 | 522 | 1.54e-110 | 341 |
| Msa0156190 | AT1G72130.1 | 33.810 | 559 | 324 | 9 | 6 | 556 | 11 | 531 | 2.67e-109 | 338 |
| Msa0156190 | AT1G22570.1 | 36.475 | 573 | 330 | 11 | 2 | 558 | 6 | 560 | 7.83e-109 | 338 |
| Msa0156190 | AT2G26690.3 | 37.259 | 518 | 304 | 5 | 50 | 555 | 2 | 510 | 1.13e-108 | 336 |
| Msa0156190 | AT1G72125.1 | 35.638 | 564 | 332 | 9 | 8 | 558 | 11 | 556 | 1.37e-108 | 337 |
| Msa0156190 | AT3G21670.1 | 35.788 | 584 | 346 | 6 | 12 | 578 | 11 | 582 | 7.95e-108 | 336 |
| Msa0156190 | AT1G33440.1 | 35.590 | 576 | 350 | 9 | 9 | 570 | 20 | 588 | 2.91e-107 | 335 |
| Msa0156190 | AT5G13400.1 | 33.916 | 572 | 360 | 7 | 6 | 559 | 41 | 612 | 8.96e-107 | 334 |
| Msa0156190 | AT1G72120.1 | 35.816 | 564 | 327 | 10 | 8 | 558 | 11 | 552 | 1.24e-105 | 329 |
| Msa0156190 | AT1G69850.1 | 32.014 | 581 | 360 | 6 | 13 | 564 | 11 | 585 | 1.92e-103 | 324 |
| Msa0156190 | AT1G27040.1 | 32.212 | 565 | 366 | 4 | 1 | 555 | 1 | 558 | 2.17e-101 | 318 |
| Msa0156190 | AT1G22570.2 | 37.100 | 531 | 301 | 10 | 44 | 558 | 10 | 523 | 2.62e-101 | 317 |
| Msa0156190 | AT1G69870.1 | 33.577 | 548 | 344 | 7 | 24 | 555 | 48 | 591 | 1.13e-100 | 318 |
| Msa0156190 | AT1G27040.2 | 32.086 | 561 | 364 | 4 | 5 | 555 | 1 | 554 | 3.28e-100 | 315 |
| Msa0156190 | AT3G16180.1 | 30.915 | 579 | 370 | 9 | 25 | 581 | 21 | 591 | 7.10e-94 | 300 |
| Msa0156190 | AT1G27040.3 | 32.061 | 524 | 339 | 4 | 42 | 555 | 10 | 526 | 7.53e-93 | 295 |
| Msa0156190 | AT1G18880.1 | 31.993 | 572 | 359 | 9 | 30 | 578 | 22 | 586 | 2.41e-92 | 295 |
| Msa0156190 | AT1G52190.1 | 29.242 | 554 | 363 | 10 | 25 | 555 | 19 | 566 | 3.85e-89 | 288 |
| Msa0156190 | AT5G28470.2 | 30.396 | 556 | 363 | 10 | 22 | 563 | 12 | 557 | 3.44e-88 | 284 |
| Msa0156190 | AT5G14940.1 | 29.821 | 560 | 348 | 9 | 25 | 560 | 5 | 543 | 1.82e-87 | 281 |
| Msa0156190 | AT5G62680.1 | 30.727 | 550 | 351 | 8 | 30 | 555 | 46 | 589 | 1.63e-85 | 278 |
| Msa0156190 | AT5G28470.1 | 30.216 | 556 | 362 | 11 | 22 | 563 | 12 | 555 | 1.87e-85 | 276 |
| Msa0156190 | AT3G45700.1 | 32.156 | 538 | 340 | 11 | 26 | 558 | 15 | 532 | 4.48e-84 | 273 |
| Msa0156190 | AT1G27080.1 | 32.609 | 552 | 349 | 11 | 21 | 559 | 8 | 549 | 2.19e-83 | 271 |
| Msa0156190 | AT1G69860.1 | 31.919 | 542 | 353 | 7 | 25 | 558 | 16 | 549 | 4.66e-83 | 270 |
| Msa0156190 | AT3G25260.1 | 31.608 | 541 | 332 | 10 | 17 | 555 | 11 | 515 | 6.66e-83 | 268 |
| Msa0156190 | AT3G45710.1 | 31.059 | 557 | 359 | 9 | 11 | 558 | 4 | 544 | 4.89e-82 | 268 |
| Msa0156190 | AT3G47960.1 | 30.909 | 550 | 348 | 9 | 30 | 555 | 64 | 605 | 6.44e-82 | 270 |
| Msa0156190 | AT3G45650.1 | 31.041 | 567 | 353 | 9 | 6 | 558 | 1 | 543 | 6.52e-82 | 267 |
| Msa0156190 | AT5G62730.1 | 29.225 | 568 | 360 | 7 | 13 | 560 | 42 | 587 | 3.18e-80 | 264 |
| Msa0156190 | AT3G45680.1 | 31.365 | 542 | 345 | 11 | 26 | 558 | 19 | 542 | 3.35e-80 | 263 |
| Msa0156190 | AT1G72130.2 | 32.265 | 437 | 262 | 7 | 128 | 556 | 3 | 413 | 8.69e-79 | 255 |
| Msa0156190 | AT1G72130.3 | 32.265 | 437 | 262 | 7 | 128 | 556 | 3 | 413 | 8.69e-79 | 255 |
| Msa0156190 | AT3G01350.1 | 29.319 | 573 | 353 | 11 | 24 | 563 | 3 | 556 | 1.53e-78 | 258 |
| Msa0156190 | AT2G02020.2 | 41.751 | 297 | 160 | 3 | 1 | 287 | 13 | 306 | 2.03e-78 | 257 |
| Msa0156190 | AT2G02020.2 | 35.545 | 211 | 122 | 4 | 351 | 550 | 310 | 517 | 8.93e-36 | 141 |
| Msa0156190 | AT3G45660.1 | 31.115 | 556 | 343 | 10 | 18 | 558 | 12 | 542 | 2.46e-77 | 255 |
| Msa0156190 | AT3G45660.3 | 31.115 | 556 | 343 | 10 | 18 | 558 | 12 | 542 | 2.46e-77 | 255 |
| Msa0156190 | AT3G45660.2 | 30.935 | 556 | 344 | 10 | 18 | 558 | 33 | 563 | 4.88e-77 | 255 |
| Msa0156190 | AT3G45650.2 | 29.511 | 593 | 354 | 10 | 6 | 558 | 1 | 569 | 1.52e-76 | 254 |
| Msa0156190 | AT3G45720.1 | 30.127 | 551 | 357 | 10 | 17 | 558 | 9 | 540 | 2.97e-76 | 252 |
| Msa0156190 | AT1G27080.2 | 32.558 | 516 | 325 | 11 | 57 | 559 | 2 | 507 | 3.96e-75 | 249 |
| Msa0156190 | AT5G62730.2 | 29.562 | 548 | 344 | 7 | 33 | 560 | 3 | 528 | 5.82e-75 | 248 |
| Msa0156190 | AT3G25280.1 | 30.109 | 548 | 337 | 9 | 17 | 555 | 11 | 521 | 2.30e-72 | 241 |
| Msa0156190 | AT3G45690.1 | 30.483 | 538 | 314 | 16 | 26 | 558 | 17 | 499 | 1.51e-69 | 233 |
| Msa0156190 | AT2G38100.2 | 23.938 | 518 | 342 | 13 | 55 | 555 | 2 | 484 | 6.40e-34 | 135 |
| Msa0156190 | AT2G38100.1 | 23.938 | 518 | 342 | 13 | 55 | 555 | 18 | 500 | 1.39e-33 | 135 |
| Msa0156190 | AT2G38100.3 | 23.938 | 518 | 342 | 13 | 55 | 555 | 24 | 506 | 1.58e-33 | 134 |
| Msa0156190 | AT5G11570.1 | 31.174 | 247 | 163 | 4 | 312 | 555 | 234 | 476 | 3.49e-30 | 124 |
| Msa0156190 | AT5G11570.1 | 25.751 | 233 | 161 | 5 | 13 | 242 | 2 | 225 | 4.88e-21 | 97.1 |
Find 117 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGCTCTTCATGCTTTC+TGG | 0.007486 | 1_4:+21981075 | None:intergenic |
| TCCTTAGCTTAATCCCTATT+TGG | 0.099616 | 1_4:-21981518 | Msa0156190:CDS |
| TTTGAAAGAATTGCTTATTT+TGG | 0.103448 | 1_4:-21985304 | Msa0156190:CDS |
| ATCAATTTGTGTCTATAAAA+AGG | 0.166876 | 1_4:+21982250 | None:intergenic |
| CTAAGCTCATATAATTCTTT+AGG | 0.174512 | 1_4:+21982148 | None:intergenic |
| GCTACCACAATTTATACTTA+TGG | 0.212994 | 1_4:-21981154 | Msa0156190:CDS |
| ACATCCATTTCATTGCATTT+AGG | 0.225385 | 1_4:+21982586 | None:intergenic |
| GATGGAACTATTGATCTTAA+AGG | 0.228746 | 1_4:-21986054 | Msa0156190:CDS |
| TATAGACACAAATTGATTAA+AGG | 0.242682 | 1_4:-21982244 | Msa0156190:CDS |
| AGCAATGTAAGCACCTAATA+TGG | 0.250872 | 1_4:+21985177 | None:intergenic |
| ATAAATGTAGCAACCCAAAT+AGG | 0.258960 | 1_4:+21981504 | None:intergenic |
| CATTGCATTTAGGTGGCTTT+AGG | 0.269165 | 1_4:+21982596 | None:intergenic |
| ACCTTAGCCATGCTAATAAA+TGG | 0.270706 | 1_4:+21982217 | None:intergenic |
| CTACCACAATTTATACTTAT+GGG | 0.281391 | 1_4:-21981153 | Msa0156190:CDS |
| TAAGCTCATATAATTCTTTA+GGG | 0.288071 | 1_4:+21982149 | None:intergenic |
| AATATCAATCATCACATTCT+TGG | 0.288996 | 1_4:-21982281 | Msa0156190:CDS |
| AGCAAAATGAATATGCTTAA+TGG | 0.290175 | 1_4:+21981174 | None:intergenic |
| AGTTCCGTTGGCAACTTAAA+AGG | 0.302268 | 1_4:-21981420 | Msa0156190:CDS |
| CCTTAGCTTAATCCCTATTT+GGG | 0.304195 | 1_4:-21981517 | Msa0156190:CDS |
| CTTCCAACAATGTCAACAAT+TGG | 0.331479 | 1_4:-21985222 | Msa0156190:CDS |
| AGAATTATATGAGCTTAGTT+TGG | 0.337781 | 1_4:-21982143 | Msa0156190:CDS |
| TGTCCACACATGCCTTATTA+AGG | 0.344783 | 1_4:+21981607 | None:intergenic |
| ATACAAAGAAAGGCAAATTC+AGG | 0.349133 | 1_4:-21982114 | Msa0156190:CDS |
| ATAGACACAAATTGATTAAA+GGG | 0.352216 | 1_4:-21982243 | Msa0156190:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.372044 | 1_4:-21982331 | Msa0156190:CDS |
| GGATATGCTCTTCCAACTCT+TGG | 0.378087 | 1_4:-21982310 | Msa0156190:CDS |
| AGGTCATTGTGGCAGCTATA+AGG | 0.378262 | 1_4:-21982198 | Msa0156190:CDS |
| GATTAAGCTAAGGATTTGTT+TGG | 0.378471 | 1_4:+21981527 | None:intergenic |
| TGTAATACCTCTAGGATTCT+TGG | 0.388690 | 1_4:+21981302 | None:intergenic |
| ATGCTCATCTTGGACGCTAT+TGG | 0.389843 | 1_4:-21985153 | Msa0156190:CDS |
| GTACATGCAGTTAAACTTGC+TGG | 0.397071 | 1_4:+21981393 | None:intergenic |
| GCCACCTAAATGCAATGAAA+TGG | 0.401237 | 1_4:-21982590 | Msa0156190:CDS |
| TCATTAACTACTACTGGAAT+TGG | 0.402950 | 1_4:-21981042 | Msa0156190:CDS |
| AGCTTTCCAACCACCTGTCT+TGG | 0.404551 | 1_4:+21986014 | None:intergenic |
| TCATACTCATTAACTACTAC+TGG | 0.407310 | 1_4:-21981048 | Msa0156190:CDS |
| CATGTGCAGGTTCCTTAATA+AGG | 0.410062 | 1_4:-21981619 | Msa0156190:intron |
| TATAATTCTTTAGGGTCATC+AGG | 0.411938 | 1_4:+21982157 | None:intergenic |
| TACATTGCTGATGCTCATCT+TGG | 0.413401 | 1_4:-21985163 | Msa0156190:CDS |
| TTCTGCCTTTGTTTATCTAT+CGG | 0.418528 | 1_4:-21985119 | Msa0156190:intron |
| TAGGGTCAAAATCGTCAAAC+TGG | 0.418534 | 1_4:+21982449 | None:intergenic |
| AGCACCAATGGTTGAAATGT+TGG | 0.423208 | 1_4:+21982474 | None:intergenic |
| TAAATGTAGCAACCCAAATA+GGG | 0.425848 | 1_4:+21981505 | None:intergenic |
| AACCCAATTGTTGACATTGT+TGG | 0.426281 | 1_4:+21985219 | None:intergenic |
| GCACCAATGGTTGAAATGTT+GGG | 0.430608 | 1_4:+21982475 | None:intergenic |
| AAAGCTTGCTCATTTCTTGT+TGG | 0.433680 | 1_4:-21985997 | Msa0156190:intron |
| TACATTATAGCAGTGGGAAC+AGG | 0.437007 | 1_4:-21982508 | Msa0156190:CDS |
| TTAAGCTCTCATTCTTGAAC+TGG | 0.438372 | 1_4:-21982414 | Msa0156190:CDS |
| GCAATGGAAGAAGGCATGAT+TGG | 0.445717 | 1_4:-21986093 | Msa0156190:CDS |
| CATTTAGGTGGCTTTAGGCT+TGG | 0.447260 | 1_4:+21982601 | None:intergenic |
| ACCCTACACTCATTCTTTGA+AGG | 0.448501 | 1_4:+21981277 | None:intergenic |
| TATACTACATCTTTGATGAA+TGG | 0.454405 | 1_4:-21980740 | Msa0156190:three_prime_UTR |
| AAGTCTATGTCTTTCAATCA+TGG | 0.461265 | 1_4:+21981221 | None:intergenic |
| CTACATCTTTGATGAATGGC+CGG | 0.465105 | 1_4:-21980736 | Msa0156190:three_prime_UTR |
| AATGGTTGAAATGTTGGGTT+TGG | 0.467028 | 1_4:+21982480 | None:intergenic |
| AGAGTTAGAAACTTCAGCTC+TGG | 0.470177 | 1_4:+21980840 | None:intergenic |
| TTCCAACAATGTCAACAATT+GGG | 0.470599 | 1_4:-21985221 | Msa0156190:CDS |
| GCAATGTAAGCACCTAATAT+GGG | 0.476307 | 1_4:+21985178 | None:intergenic |
| GGAAATGAGTACACAAAAGA+TGG | 0.476556 | 1_4:-21986072 | Msa0156190:CDS |
| TTGGAAGAGTATACAAAGAA+AGG | 0.482322 | 1_4:-21982124 | Msa0156190:CDS |
| TAGGTGGCTTTAGGCTTGGT+AGG | 0.485426 | 1_4:+21982605 | None:intergenic |
| AAACCCAACATTTCAACCAT+TGG | 0.488482 | 1_4:-21982478 | Msa0156190:CDS |
| AGTGTATGTACAAGATAATG+TGG | 0.492346 | 1_4:-21982344 | Msa0156190:CDS |
| AATATTATGGCAATGGAAGA+AGG | 0.492661 | 1_4:-21986102 | None:intergenic |
| TCCATTTATTAGCATGGCTA+AGG | 0.503717 | 1_4:-21982218 | Msa0156190:CDS |
| TGAAGGAGTGTAATACCTCT+AGG | 0.507089 | 1_4:+21981294 | None:intergenic |
| AGCTCTCATTCTTGAACTGG+TGG | 0.510746 | 1_4:-21982411 | Msa0156190:CDS |
| AGGGAGTCCATTTATTAGCA+TGG | 0.513040 | 1_4:-21982224 | Msa0156190:CDS |
| TACATCTTTGATGAATGGCC+GGG | 0.515407 | 1_4:-21980735 | Msa0156190:three_prime_UTR |
| CCAGAAAGCATGAAGAGCCT+TGG | 0.517929 | 1_4:-21981075 | Msa0156190:CDS |
| GTCAAACTGGTCAGCACCAA+TGG | 0.520660 | 1_4:+21982462 | None:intergenic |
| ATTTGAGCAATCATTGCACT+TGG | 0.524066 | 1_4:+21981480 | None:intergenic |
| CCCAAATAGGGATTAAGCTA+AGG | 0.524217 | 1_4:+21981517 | None:intergenic |
| AACAATGTCAACAATTGGGT+TGG | 0.530864 | 1_4:-21985217 | Msa0156190:CDS |
| TCAATCATCACATTCTTGGC+AGG | 0.532239 | 1_4:-21982277 | Msa0156190:CDS |
| TCCATTTCATTGCATTTAGG+TGG | 0.533894 | 1_4:+21982589 | None:intergenic |
| GTTCAAGTACTAGTAATGAA+TGG | 0.536165 | 1_4:-21981581 | Msa0156190:CDS |
| ACAATTTATACTTATGGGAG+TGG | 0.538565 | 1_4:-21981148 | Msa0156190:CDS |
| TCCTTCAAAGAATGAGTGTA+GGG | 0.550595 | 1_4:-21981278 | Msa0156190:CDS |
| AGGTGGCTTTAGGCTTGGTA+GGG | 0.557140 | 1_4:+21982606 | None:intergenic |
| ACTGAGAAACATGGTGGTCG+AGG | 0.558387 | 1_4:-21980976 | Msa0156190:CDS |
| ATTATAGCAGTGGGAACAGG+TGG | 0.564517 | 1_4:-21982505 | Msa0156190:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.565057 | 1_4:+21982298 | None:intergenic |
| TCGTAAAATTCGATCTAGCC+CGG | 0.568323 | 1_4:+21980717 | None:intergenic |
| CAACTATCATTATCACTATG+TGG | 0.583350 | 1_4:+21981247 | None:intergenic |
| AGAAACATGGTGGTCGAGGG+TGG | 0.584691 | 1_4:-21980972 | Msa0156190:CDS |
| TATGTGTCTACTTACACTAT+CGG | 0.587379 | 1_4:-21982632 | Msa0156190:CDS |
| TCATGTCTACTGCAGTGTAT+GGG | 0.587588 | 1_4:-21985330 | Msa0156190:intron |
| GATTATGTAAGTGATAATCA+TGG | 0.591566 | 1_4:+21981362 | None:intergenic |
| TTCCCACTGCTATAATGTAG+AGG | 0.593891 | 1_4:+21982512 | None:intergenic |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1_4:-21982572 | Msa0156190:CDS |
| AATAAGGCATGTGTGGACAC+TGG | 0.601730 | 1_4:-21981603 | Msa0156190:CDS |
| GTTCCTTAATAAGGCATGTG+TGG | 0.604135 | 1_4:-21981610 | Msa0156190:CDS |
| GCCCTCTACATTATAGCAGT+GGG | 0.606132 | 1_4:-21982514 | Msa0156190:CDS |
| TGCCCTCTACATTATAGCAG+TGG | 0.606625 | 1_4:-21982515 | Msa0156190:CDS |
| TCAGATCCAAGACAGGTGGT+TGG | 0.608354 | 1_4:-21986020 | Msa0156190:CDS |
| TCTGTTCTCAGATCCAAGAC+AGG | 0.609180 | 1_4:-21986027 | Msa0156190:CDS |
| ATGCACAATAACACAAGTAG+AGG | 0.609944 | 1_4:-21981553 | Msa0156190:CDS |
| TTAATGAGTATGATGTTCCA+AGG | 0.610874 | 1_4:+21981058 | None:intergenic |
| ACTACTCTTAACAGTTCCGT+TGG | 0.617219 | 1_4:-21981432 | Msa0156190:CDS |
| GAACACAAATAGTGTTTGTG+TGG | 0.618107 | 1_4:+21982543 | None:intergenic |
| TGGAAGAGATGACAGTGCCT+TGG | 0.622263 | 1_4:+21985239 | None:intergenic |
| TGAAAGACATAGACTTAGTG+TGG | 0.622321 | 1_4:-21981214 | Msa0156190:CDS |
| TCCCACTGCTATAATGTAGA+GGG | 0.626967 | 1_4:+21982513 | None:intergenic |
| TAGCATGGCTAAGGTCATTG+TGG | 0.628074 | 1_4:-21982209 | Msa0156190:CDS |
| CTCCTTCAAAGAATGAGTGT+AGG | 0.632299 | 1_4:-21981279 | Msa0156190:CDS |
| CTGAGAAACATGGTGGTCGA+GGG | 0.632880 | 1_4:-21980975 | Msa0156190:CDS |
| ACTCCCATAAGTATAAATTG+TGG | 0.648143 | 1_4:+21981150 | None:intergenic |
| ACATACCGATAGATAAACAA+AGG | 0.660655 | 1_4:+21985114 | None:intergenic |
| ATGTACAAGATAATGTGGGT+TGG | 0.661714 | 1_4:-21982339 | Msa0156190:CDS |
| TCACATGTCACTGAGAAACA+TGG | 0.664134 | 1_4:-21980985 | Msa0156190:CDS |
| GTGTATGTACAAGATAATGT+GGG | 0.673777 | 1_4:-21982343 | Msa0156190:CDS |
| GTTCTCAGATCCAAGACAGG+TGG | 0.678500 | 1_4:-21986024 | Msa0156190:CDS |
| TTGACAAAGAAGCTTCACCA+AGG | 0.708677 | 1_4:-21985256 | Msa0156190:CDS |
| CATGCAGTTAAACTTGCTGG+AGG | 0.715363 | 1_4:+21981396 | None:intergenic |
| AAGTTGACCAAGAATCCTAG+AGG | 0.716009 | 1_4:-21981309 | Msa0156190:CDS |
| TTATAGCAGTGGGAACAGGT+GGG | 0.731594 | 1_4:-21982504 | Msa0156190:CDS |
| CATGTCACTGAGAAACATGG+TGG | 0.747015 | 1_4:-21980982 | Msa0156190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTAATATATTAA+TGG | - | chr1_4:21982144-21982163 | Msa0156190:CDS | 0.0% |
| !!! | ATTTATATTTAATTTAATTT+TGG | - | chr1_4:21982642-21982661 | Msa0156190:intron | 0.0% |
| !!! | TTTATATTTAATTTAATTTT+GGG | - | chr1_4:21982643-21982662 | Msa0156190:intron | 0.0% |
| !!! | ATAATAATAAATTTAATTTA+AGG | + | chr1_4:21983532-21983551 | None:intergenic | 0.0% |
| !! | AAAATTAAAATTAAAAATTA+AGG | - | chr1_4:21983580-21983599 | Msa0156190:intron | 0.0% |
| !! | AAATTAAAATTAAAAATTAA+GGG | - | chr1_4:21983581-21983600 | Msa0156190:intron | 0.0% |
| !! | AATAATTGAACAATATATAT+AGG | + | chr1_4:21980929-21980948 | None:intergenic | 10.0% |
| !! | AATTAACAATTCAATTAAAT+GGG | + | chr1_4:21981445-21981464 | None:intergenic | 10.0% |
| !! | AAATTAACAATTCAATTAAA+TGG | + | chr1_4:21981446-21981465 | None:intergenic | 10.0% |
| !!! | AAAATCTTTTTTTCTTTATA+CGG | + | chr1_4:21981895-21981914 | None:intergenic | 10.0% |
| !!! | CTATATTTTTAAAAGAAAAA+AGG | - | chr1_4:21981957-21981976 | Msa0156190:intron | 10.0% |
| !! | AAAATAATAATGTTAAAGAT+TGG | + | chr1_4:21983011-21983030 | None:intergenic | 10.0% |
| !! | CAAAAAATAATGTTAAAAAT+TGG | + | chr1_4:21983077-21983096 | None:intergenic | 10.0% |
| !! | TTATTATTCAAAATTGAAAT+TGG | + | chr1_4:21984026-21984045 | None:intergenic | 10.0% |
| !!! | TTATAATAATTCATTAGTTT+CGG | - | chr1_4:21984142-21984161 | Msa0156190:intron | 10.0% |
| !!! | GAATCAATATTTTAAAATAA+GGG | + | chr1_4:21985159-21985178 | None:intergenic | 10.0% |
| !!! | AGAATCAATATTTTAAAATA+AGG | + | chr1_4:21985160-21985179 | None:intergenic | 10.0% |
| !! | AAAATATGTTAATTGTACTA+AGG | + | chr1_4:21980952-21980971 | None:intergenic | 15.0% |
| !! | TAAAGATTATAAATAATCCA+CGG | + | chr1_4:21981074-21981093 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAGAGACATTA+TGG | - | chr1_4:21981096-21981115 | Msa0156190:CDS | 15.0% |
| !!! | AAGATAAAATTTTAGATTAG+AGG | + | chr1_4:21981294-21981313 | None:intergenic | 15.0% |
| !!! | AAATCTTTTTTTCTTTATAC+GGG | + | chr1_4:21981894-21981913 | None:intergenic | 15.0% |
| !! | TTATTACTATTATTAACTAG+CGG | - | chr1_4:21982023-21982042 | Msa0156190:intron | 15.0% |
| !! | TTATAAACAAAATATTGTCA+AGG | - | chr1_4:21982186-21982205 | Msa0156190:CDS | 15.0% |
| !!! | TTTATCTTAATTTTATATGC+AGG | + | chr1_4:21982254-21982273 | None:intergenic | 15.0% |
| !!! | TAAAAGTTCTAATTAAAGAA+GGG | + | chr1_4:21982438-21982457 | None:intergenic | 15.0% |
| !!! | ATAAAAGTTCTAATTAAAGA+AGG | + | chr1_4:21982439-21982458 | None:intergenic | 15.0% |
| !! | TTAAATATAAATGTGAGTTT+AGG | + | chr1_4:21982634-21982653 | None:intergenic | 15.0% |
| !! | ATTTAAGAATATGTTTGATA+TGG | + | chr1_4:21982710-21982729 | None:intergenic | 15.0% |
| !!! | CATATTTTAAAGGTAAAAAA+AGG | + | chr1_4:21982808-21982827 | None:intergenic | 15.0% |
| !!! | TTTTTTACCTTTAAAATATG+TGG | - | chr1_4:21982808-21982827 | Msa0156190:intron | 15.0% |
| !!! | AAATTCTCTAAAAAAAGATT+AGG | + | chr1_4:21982983-21983002 | None:intergenic | 15.0% |
| !! | GTGAAAGTAATAAAATAATA+TGG | - | chr1_4:21983237-21983256 | Msa0156190:intron | 15.0% |
| !!! | TTAAAAATTAAGGGTATTTT+TGG | - | chr1_4:21983590-21983609 | Msa0156190:intron | 15.0% |
| !! | TTCACTAGAAAAATGTTATT+CGG | - | chr1_4:21980871-21980890 | Msa0156190:CDS | 20.0% |
| !! | TTTACCAACAAAGAAAATAA+TGG | - | chr1_4:21981312-21981331 | Msa0156190:CDS | 20.0% |
| !! | AAACTTATCAACAACATATA+AGG | + | chr1_4:21981400-21981419 | None:intergenic | 20.0% |
| !! | ATTCAATTAAATGGGTAATA+TGG | + | chr1_4:21981437-21981456 | None:intergenic | 20.0% |
| !!! | TTTGAAAGAATTGCTTATTT+TGG | - | chr1_4:21981505-21981524 | Msa0156190:CDS | 20.0% |
| !! | ACATATTCTTAAATAAACCA+CGG | - | chr1_4:21982716-21982735 | Msa0156190:intron | 20.0% |
| !!! | TGTTACTAATCTTTTTTTAG+TGG | - | chr1_4:21983042-21983061 | Msa0156190:intron | 20.0% |
| !!! | TTCTTACTAATCTTTTTTAG+AGG | - | chr1_4:21983104-21983123 | Msa0156190:intron | 20.0% |
| !!! | TTCACGTGTTATTTTATAAT+TGG | - | chr1_4:21983462-21983481 | Msa0156190:intron | 20.0% |
| !! | GAATAATAACAAACAATGAA+AGG | - | chr1_4:21984037-21984056 | Msa0156190:intron | 20.0% |
| !! | ATCAATTTGTGTCTATAAAA+AGG | + | chr1_4:21984562-21984581 | None:intergenic | 20.0% |
| !! | TATAGACACAAATTGATTAA+AGG | - | chr1_4:21984565-21984584 | Msa0156190:intron | 20.0% |
| !! | ATAGACACAAATTGATTAAA+GGG | - | chr1_4:21984566-21984585 | Msa0156190:intron | 20.0% |
| !! | TAAGCTCATATAATTCTTTA+GGG | + | chr1_4:21984663-21984682 | None:intergenic | 20.0% |
| !!! | AACAATTTCGGCATTTTTTT+CGG | + | chr1_4:21981030-21981049 | None:intergenic | 25.0% |
| ! | AAAAAAATGCCGAAATTGTT+TGG | - | chr1_4:21981030-21981049 | Msa0156190:CDS | 25.0% |
| ! | ATTTGTAAGCAAAAACCTTA+AGG | - | chr1_4:21981148-21981167 | Msa0156190:CDS | 25.0% |
| ! | TTACACTCTATAAGAGTAAA+TGG | + | chr1_4:21981212-21981231 | None:intergenic | 25.0% |
| !! | ATGACCATTATTTTCTTTGT+TGG | + | chr1_4:21981319-21981338 | None:intergenic | 25.0% |
| ! | ATTAAAGAAGGGAAAATAGA+AGG | + | chr1_4:21982427-21982446 | None:intergenic | 25.0% |
| !!! | TTATATGTAGCTTTATCAAG+AGG | + | chr1_4:21982478-21982497 | None:intergenic | 25.0% |
| ! | TTACCATAAATAAGTCACAA+GGG | + | chr1_4:21982558-21982577 | None:intergenic | 25.0% |
| ! | ATTACCATAAATAAGTCACA+AGG | + | chr1_4:21982559-21982578 | None:intergenic | 25.0% |
| ! | AATAGCAAAACTTAGTCTAA+CGG | - | chr1_4:21982576-21982595 | Msa0156190:CDS | 25.0% |
| ! | TCTATGTTTAACAACATCAA+AGG | - | chr1_4:21982778-21982797 | Msa0156190:intron | 25.0% |
| !!! | TTTACCTTTAAAATATGTGG+TGG | - | chr1_4:21982811-21982830 | Msa0156190:intron | 25.0% |
| !!! | TTACCTTTAAAATATGTGGT+GGG | - | chr1_4:21982812-21982831 | Msa0156190:intron | 25.0% |
| ! | AAGAAGAACATAATTTGAAG+GGG | + | chr1_4:21982893-21982912 | None:intergenic | 25.0% |
| ! | GAAGAAGAACATAATTTGAA+GGG | + | chr1_4:21982894-21982913 | None:intergenic | 25.0% |
| ! | AGAAGAAGAACATAATTTGA+AGG | + | chr1_4:21982895-21982914 | None:intergenic | 25.0% |
| ! | TTCAAATTATGTTCTTCTTC+TGG | - | chr1_4:21982894-21982913 | Msa0156190:intron | 25.0% |
| !! | GTTTGTTACAATTGATCAAA+GGG | - | chr1_4:21983164-21983183 | Msa0156190:intron | 25.0% |
| !!! | TATGGAAATACTGATTTTTG+TGG | - | chr1_4:21983255-21983274 | Msa0156190:intron | 25.0% |
| !! | AATCTTTGTTGATTGTATTG+AGG | - | chr1_4:21983300-21983319 | Msa0156190:intron | 25.0% |
| !! | ATCTTTGTTGATTGTATTGA+GGG | - | chr1_4:21983301-21983320 | Msa0156190:intron | 25.0% |
| ! | ACAGATGTACAACATAAAAT+CGG | - | chr1_4:21983331-21983350 | Msa0156190:intron | 25.0% |
| !! | CTATTTGTTACATGTGTTAT+TGG | - | chr1_4:21983552-21983571 | Msa0156190:intron | 25.0% |
| !! | TTTTATGACAAAATGAGATG+TGG | + | chr1_4:21983807-21983826 | None:intergenic | 25.0% |
| ! | GTCTTATATCCTAACAATAA+AGG | + | chr1_4:21983899-21983918 | None:intergenic | 25.0% |
| !! | TGTTAGGATATAAGACTTTT+TGG | - | chr1_4:21983903-21983922 | Msa0156190:intron | 25.0% |
| ! | TAAAACCTATTTGATACATG+TGG | - | chr1_4:21983948-21983967 | Msa0156190:intron | 25.0% |
| ! | AAATACCACATGTATCAAAT+AGG | + | chr1_4:21983956-21983975 | None:intergenic | 25.0% |
| ! | TAACAAACAATGAAAGGATT+AGG | - | chr1_4:21984043-21984062 | Msa0156190:intron | 25.0% |
| ! | TTGCTTAGTAATATTTGACA+AGG | - | chr1_4:21984117-21984136 | Msa0156190:intron | 25.0% |
| !! | AATTCATTAGTTTCGGTTAT+TGG | - | chr1_4:21984149-21984168 | Msa0156190:intron | 25.0% |
| !! | GCTTAAGTGATTTTTCTTTA+GGG | + | chr1_4:21984381-21984400 | None:intergenic | 25.0% |
| !! | AGCTTAAGTGATTTTTCTTT+AGG | + | chr1_4:21984382-21984401 | None:intergenic | 25.0% |
| ! | AATATCAATCATCACATTCT+TGG | - | chr1_4:21984528-21984547 | Msa0156190:intron | 25.0% |
| ! | CTAAGCTCATATAATTCTTT+AGG | + | chr1_4:21984664-21984683 | None:intergenic | 25.0% |
| ! | AGAATTATATGAGCTTAGTT+TGG | - | chr1_4:21984666-21984685 | Msa0156190:intron | 25.0% |
| !!! | CTTGATCATTTGATTTTACA+AGG | - | chr1_4:21984768-21984787 | Msa0156190:intron | 25.0% |
| !!! | AAATGGTAGATGTACTTTTT+TGG | + | chr1_4:21984954-21984973 | None:intergenic | 25.0% |
| ! | ATTTAGTGTAATCAAGTATC+AGG | + | chr1_4:21985003-21985022 | None:intergenic | 25.0% |
| !! | AATACCCTTTTCATAAAACA+AGG | - | chr1_4:21985353-21985372 | Msa0156190:intron | 25.0% |
| !!! | AGTTCCTTGTTTTATGAAAA+GGG | + | chr1_4:21985360-21985379 | None:intergenic | 25.0% |
| !!! | TAGTTCCTTGTTTTATGAAA+AGG | + | chr1_4:21985361-21985380 | None:intergenic | 25.0% |
| ! | GATTATGTAAGTGATAATCA+TGG | + | chr1_4:21985450-21985469 | None:intergenic | 25.0% |
| !!! | TAATGGAACTTCATGTTTTT+TGG | + | chr1_4:21985621-21985640 | None:intergenic | 25.0% |
| ! | AGCAAAATGAATATGCTTAA+TGG | + | chr1_4:21985638-21985657 | None:intergenic | 25.0% |
| ! | CTACCACAATTTATACTTAT+GGG | - | chr1_4:21985656-21985675 | Msa0156190:intron | 25.0% |
| !! | TGATTACTACTATGCATTTT+TGG | - | chr1_4:21985889-21985908 | Msa0156190:intron | 25.0% |
| ! | TATACTACATCTTTGATGAA+TGG | - | chr1_4:21986069-21986088 | Msa0156190:CDS | 25.0% |
| GATGGAACTATTGATCTTAA+AGG | - | chr1_4:21980755-21980774 | Msa0156190:three_prime_UTR | 30.0% | |
| AGGTAGATTAAATTGTACTG+TGG | + | chr1_4:21980909-21980928 | None:intergenic | 30.0% | |
| ACCTTAAGGAGTTATCTTAT+TGG | - | chr1_4:21981162-21981181 | Msa0156190:CDS | 30.0% | |
| CCTTAAGGAGTTATCTTATT+GGG | - | chr1_4:21981163-21981182 | Msa0156190:CDS | 30.0% | |
| TTGATCATCTTAAGCAAAGT+TGG | + | chr1_4:21981355-21981374 | None:intergenic | 30.0% | |
| TTCCAACAATGTCAACAATT+GGG | - | chr1_4:21981588-21981607 | Msa0156190:CDS | 30.0% | |
| ! | GTTTTTATGACTCCCATATT+AGG | - | chr1_4:21981619-21981638 | Msa0156190:intron | 30.0% |
| ! | TTCTGCCTTTGTTTATCTAT+CGG | - | chr1_4:21981690-21981709 | Msa0156190:intron | 30.0% |
| ACATACCGATAGATAAACAA+AGG | + | chr1_4:21981698-21981717 | None:intergenic | 30.0% | |
| AAAGGTCCTCTTATAAAGAT+CGG | + | chr1_4:21981792-21981811 | None:intergenic | 30.0% | |
| ATATTGAAACCCTAAACCAA+TGG | - | chr1_4:21981858-21981877 | Msa0156190:intron | 30.0% | |
| ATTATTAACTAGCGGAAAGA+CGG | - | chr1_4:21982031-21982050 | Msa0156190:intron | 30.0% | |
| AAGCTACATATAATTGACCA+TGG | - | chr1_4:21982485-21982504 | Msa0156190:CDS | 30.0% | |
| ATAGCAAAACTTAGTCTAAC+GGG | - | chr1_4:21982577-21982596 | Msa0156190:CDS | 30.0% | |
| ! | TGTTTTCTACTAAGCACAAA+TGG | - | chr1_4:21982604-21982623 | Msa0156190:CDS | 30.0% |
| TTTGATATGGAAATCCTAAC+AGG | + | chr1_4:21982697-21982716 | None:intergenic | 30.0% | |
| CTAGATATGACATGTGTAAT+GGG | + | chr1_4:21982756-21982775 | None:intergenic | 30.0% | |
| CATTACACATGTCATATCTA+GGG | - | chr1_4:21982755-21982774 | Msa0156190:intron | 30.0% | |
| !! | TATCCCACCACATATTTTAA+AGG | + | chr1_4:21982818-21982837 | None:intergenic | 30.0% |
| TTCCTTGAACAATTGAGTTT+AGG | - | chr1_4:21982839-21982858 | Msa0156190:intron | 30.0% | |
| TTCCTAAACTCAATTGTTCA+AGG | + | chr1_4:21982844-21982863 | None:intergenic | 30.0% | |
| CAAACGTGAGCAAAAAATAA+TGG | + | chr1_4:21983149-21983168 | None:intergenic | 30.0% | |
| ! | CGTTTGTTACAATTGATCAA+AGG | - | chr1_4:21983163-21983182 | Msa0156190:intron | 30.0% |
| TTACAATTGATCAAAGGGTA+AGG | - | chr1_4:21983169-21983188 | Msa0156190:intron | 30.0% | |
| GGAAGAGATATGAAAATACT+TGG | - | chr1_4:21983276-21983295 | Msa0156190:intron | 30.0% | |
| ! | TCTTTGTTGATTGTATTGAG+GGG | - | chr1_4:21983302-21983321 | Msa0156190:intron | 30.0% |
| !!! | TTTTTTGTGAGTTTGATCTG+TGG | - | chr1_4:21983392-21983411 | Msa0156190:intron | 30.0% |
| GGTTAATAACAGAGAGTTAA+CGG | - | chr1_4:21983413-21983432 | Msa0156190:intron | 30.0% | |
| GTTAATAACAGAGAGTTAAC+GGG | - | chr1_4:21983414-21983433 | Msa0156190:intron | 30.0% | |
| TTAATAACAGAGAGTTAACG+GGG | - | chr1_4:21983415-21983434 | Msa0156190:intron | 30.0% | |
| GTGTAGTTAGAATTTAGACA+TGG | + | chr1_4:21983856-21983875 | None:intergenic | 30.0% | |
| TATGTGTCTACTTACACTAT+CGG | - | chr1_4:21984177-21984196 | Msa0156190:intron | 30.0% | |
| ACATCCATTTCATTGCATTT+AGG | + | chr1_4:21984226-21984245 | None:intergenic | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | - | chr1_4:21984237-21984256 | Msa0156190:intron | 30.0% | |
| AGTGTATGTACAAGATAATG+TGG | - | chr1_4:21984465-21984484 | Msa0156190:intron | 30.0% | |
| GTGTATGTACAAGATAATGT+GGG | - | chr1_4:21984466-21984485 | Msa0156190:intron | 30.0% | |
| !! | TATAATTCTTTAGGGTCATC+AGG | + | chr1_4:21984655-21984674 | None:intergenic | 30.0% |
| ! | TTGGAAGAGTATACAAAGAA+AGG | - | chr1_4:21984685-21984704 | Msa0156190:intron | 30.0% |
| ATACAAAGAAAGGCAAATTC+AGG | - | chr1_4:21984695-21984714 | Msa0156190:intron | 30.0% | |
| CAACAAACATGAATTTCACT+CGG | + | chr1_4:21984838-21984857 | None:intergenic | 30.0% | |
| ! | TTTGTTGCGTCACTTTAATA+TGG | - | chr1_4:21984851-21984870 | Msa0156190:intron | 30.0% |
| ! | TTGTTGCGTCACTTTAATAT+GGG | - | chr1_4:21984852-21984871 | Msa0156190:intron | 30.0% |
| ACTCAAAATGAAATTCATGC+AGG | + | chr1_4:21984900-21984919 | None:intergenic | 30.0% | |
| GTTCAAGTACTAGTAATGAA+TGG | - | chr1_4:21985228-21985247 | Msa0156190:CDS | 30.0% | |
| ! | GATTAAGCTAAGGATTTGTT+TGG | + | chr1_4:21985285-21985304 | None:intergenic | 30.0% |
| TAAATGTAGCAACCCAAATA+GGG | + | chr1_4:21985307-21985326 | None:intergenic | 30.0% | |
| ATAAATGTAGCAACCCAAAT+AGG | + | chr1_4:21985308-21985327 | None:intergenic | 30.0% | |
| CAACTATCATTATCACTATG+TGG | + | chr1_4:21985565-21985584 | None:intergenic | 30.0% | |
| AAGTCTATGTCTTTCAATCA+TGG | + | chr1_4:21985591-21985610 | None:intergenic | 30.0% | |
| GCTACCACAATTTATACTTA+TGG | - | chr1_4:21985655-21985674 | Msa0156190:intron | 30.0% | |
| ACTCCCATAAGTATAAATTG+TGG | + | chr1_4:21985662-21985681 | None:intergenic | 30.0% | |
| ACAATTTATACTTATGGGAG+TGG | - | chr1_4:21985661-21985680 | Msa0156190:intron | 30.0% | |
| TTAATGAGTATGATGTTCCA+AGG | + | chr1_4:21985754-21985773 | None:intergenic | 30.0% | |
| TCATACTCATTAACTACTAC+TGG | - | chr1_4:21985761-21985780 | Msa0156190:intron | 30.0% | |
| TCATTAACTACTACTGGAAT+TGG | - | chr1_4:21985767-21985786 | Msa0156190:intron | 30.0% | |
| GGAAATGAGTACACAAAAGA+TGG | - | chr1_4:21980737-21980756 | Msa0156190:three_prime_UTR | 35.0% | |
| ! | AAAGCTTGCTCATTTCTTGT+TGG | - | chr1_4:21980812-21980831 | Msa0156190:CDS | 35.0% |
| TTTCTCTCTCACACACTTTA+TGG | - | chr1_4:21980840-21980859 | Msa0156190:CDS | 35.0% | |
| !!! | GCATTTTTTTCGGTTGAGTT+AGG | + | chr1_4:21981020-21981039 | None:intergenic | 35.0% |
| AAATGCCGAAATTGTTTGGT+CGG | - | chr1_4:21981034-21981053 | Msa0156190:CDS | 35.0% | |
| TATGACCGACCAAACAATTT+CGG | + | chr1_4:21981042-21981061 | None:intergenic | 35.0% | |
| CCCAATAAGATAACTCCTTA+AGG | + | chr1_4:21981166-21981185 | None:intergenic | 35.0% | |
| ATGATCAAAGCATGCTCATT+AGG | - | chr1_4:21981367-21981386 | Msa0156190:CDS | 35.0% | |
| CTTCCAACAATGTCAACAAT+TGG | - | chr1_4:21981587-21981606 | Msa0156190:CDS | 35.0% | |
| AACCCAATTGTTGACATTGT+TGG | + | chr1_4:21981593-21981612 | None:intergenic | 35.0% | |
| AACAATGTCAACAATTGGGT+TGG | - | chr1_4:21981592-21981611 | Msa0156190:CDS | 35.0% | |
| GCAATGTAAGCACCTAATAT+GGG | + | chr1_4:21981634-21981653 | None:intergenic | 35.0% | |
| AGCAATGTAAGCACCTAATA+TGG | + | chr1_4:21981635-21981654 | None:intergenic | 35.0% | |
| AAAAATTTGCATTCTTGCCC+TGG | + | chr1_4:21981820-21981839 | None:intergenic | 35.0% | |
| TTATTAACTAGCGGAAAGAC+GGG | - | chr1_4:21982032-21982051 | Msa0156190:intron | 35.0% | |
| TGAAAGATAGATTCCGACAT+TGG | - | chr1_4:21982522-21982541 | Msa0156190:CDS | 35.0% | |
| GAAAGATAGATTCCGACATT+GGG | - | chr1_4:21982523-21982542 | Msa0156190:CDS | 35.0% | |
| CCTAGATATGACATGTGTAA+TGG | + | chr1_4:21982757-21982776 | None:intergenic | 35.0% | |
| CCATTACACATGTCATATCT+AGG | - | chr1_4:21982754-21982773 | Msa0156190:intron | 35.0% | |
| ACACTATATTGTGTGCATGT+TGG | - | chr1_4:21983872-21983891 | Msa0156190:intron | 35.0% | |
| CATGTTGGTCCTTTATTGTT+AGG | - | chr1_4:21983887-21983906 | Msa0156190:intron | 35.0% | |
| ! | ATGAAAGGATTAGGAGTACA+AGG | - | chr1_4:21984052-21984071 | Msa0156190:intron | 35.0% |
| ! | ATTAGTTTCGGTTATTGGCA+GGG | - | chr1_4:21984154-21984173 | Msa0156190:intron | 35.0% |
| TCCATTTCATTGCATTTAGG+TGG | + | chr1_4:21984223-21984242 | None:intergenic | 35.0% | |
| GAACACAAATAGTGTTTGTG+TGG | + | chr1_4:21984269-21984288 | None:intergenic | 35.0% | |
| AATGGTTGAAATGTTGGGTT+TGG | + | chr1_4:21984332-21984351 | None:intergenic | 35.0% | |
| AAACCCAACATTTCAACCAT+TGG | - | chr1_4:21984331-21984350 | Msa0156190:intron | 35.0% | |
| TTAAGCTCTCATTCTTGAAC+TGG | - | chr1_4:21984395-21984414 | Msa0156190:intron | 35.0% | |
| ! | TGGATGTCTTGCATTGTTTT+TGG | - | chr1_4:21984418-21984437 | Msa0156190:intron | 35.0% |
| !! | GGATGTCTTGCATTGTTTTT+GGG | - | chr1_4:21984419-21984438 | Msa0156190:intron | 35.0% |
| ATGTACAAGATAATGTGGGT+TGG | - | chr1_4:21984470-21984489 | Msa0156190:intron | 35.0% | |
| TCCATTTATTAGCATGGCTA+AGG | - | chr1_4:21984591-21984610 | Msa0156190:intron | 35.0% | |
| ACCTTAGCCATGCTAATAAA+TGG | + | chr1_4:21984595-21984614 | None:intergenic | 35.0% | |
| TGATCAAGTAAATGCGAGTA+TGG | + | chr1_4:21984756-21984775 | None:intergenic | 35.0% | |
| ! | TGTTGCGTCACTTTAATATG+GGG | - | chr1_4:21984853-21984872 | Msa0156190:intron | 35.0% |
| ! | AGTACATCTACCATTTTGCT+TGG | - | chr1_4:21984958-21984977 | Msa0156190:intron | 35.0% |
| ! | TCTTGTTTGTATACATGTGC+AGG | - | chr1_4:21985177-21985196 | Msa0156190:CDS | 35.0% |
| ATGCACAATAACACAAGTAG+AGG | - | chr1_4:21985256-21985275 | Msa0156190:CDS | 35.0% | |
| TCCTTAGCTTAATCCCTATT+TGG | - | chr1_4:21985291-21985310 | Msa0156190:CDS | 35.0% | |
| CCTTAGCTTAATCCCTATTT+GGG | - | chr1_4:21985292-21985311 | Msa0156190:CDS | 35.0% | |
| ATTTGAGCAATCATTGCACT+TGG | + | chr1_4:21985332-21985351 | None:intergenic | 35.0% | |
| !! | TGTAATACCTCTAGGATTCT+TGG | + | chr1_4:21985510-21985529 | None:intergenic | 35.0% |
| TCCTTCAAAGAATGAGTGTA+GGG | - | chr1_4:21985531-21985550 | Msa0156190:intron | 35.0% | |
| TGAAAGACATAGACTTAGTG+TGG | - | chr1_4:21985595-21985614 | Msa0156190:intron | 35.0% | |
| !! | TTTTTCGGTTGAGTTAGGAC+AGG | + | chr1_4:21981015-21981034 | None:intergenic | 40.0% |
| TTCATGTCTACTGCAGTGTA+TGG | - | chr1_4:21981478-21981497 | Msa0156190:CDS | 40.0% | |
| TCATGTCTACTGCAGTGTAT+GGG | - | chr1_4:21981479-21981498 | Msa0156190:CDS | 40.0% | |
| TTGACAAAGAAGCTTCACCA+AGG | - | chr1_4:21981553-21981572 | Msa0156190:CDS | 40.0% | |
| TACATTGCTGATGCTCATCT+TGG | - | chr1_4:21981646-21981665 | Msa0156190:intron | 40.0% | |
| AACCCTCCGATCTTTATAAG+AGG | - | chr1_4:21981783-21981802 | Msa0156190:intron | 40.0% | |
| GTCCTCTTATAAAGATCGGA+GGG | + | chr1_4:21981788-21981807 | None:intergenic | 40.0% | |
| TAAGAGGACCTTTGTAATCC+AGG | - | chr1_4:21981799-21981818 | Msa0156190:intron | 40.0% | |
| AAGAGGACCTTTGTAATCCA+GGG | - | chr1_4:21981800-21981819 | Msa0156190:intron | 40.0% | |
| ATTCTTGCCCTGGATTACAA+AGG | + | chr1_4:21981810-21981829 | None:intergenic | 40.0% | |
| GGGAAAATAGAAGGAGAAGA+TGG | + | chr1_4:21982418-21982437 | None:intergenic | 40.0% | |
| ATAGATTCCGACATTGGGAA+TGG | - | chr1_4:21982528-21982547 | Msa0156190:CDS | 40.0% | |
| CTGCCCTTGTGACTTATTTA+TGG | - | chr1_4:21982552-21982571 | Msa0156190:CDS | 40.0% | |
| ! | AACCCAAAAGTGTGCTGAAA+GGG | - | chr1_4:21983625-21983644 | Msa0156190:intron | 40.0% |
| ! | CATTAGTTTCGGTTATTGGC+AGG | - | chr1_4:21984153-21984172 | Msa0156190:intron | 40.0% |
| CATTGCATTTAGGTGGCTTT+AGG | + | chr1_4:21984216-21984235 | None:intergenic | 40.0% | |
| GCCACCTAAATGCAATGAAA+TGG | - | chr1_4:21984219-21984238 | Msa0156190:intron | 40.0% | |
| TCCCACTGCTATAATGTAGA+GGG | + | chr1_4:21984299-21984318 | None:intergenic | 40.0% | |
| TTCCCACTGCTATAATGTAG+AGG | + | chr1_4:21984300-21984319 | None:intergenic | 40.0% | |
| TACATTATAGCAGTGGGAAC+AGG | - | chr1_4:21984301-21984320 | Msa0156190:intron | 40.0% | |
| GCACCAATGGTTGAAATGTT+GGG | + | chr1_4:21984337-21984356 | None:intergenic | 40.0% | |
| AGCACCAATGGTTGAAATGT+TGG | + | chr1_4:21984338-21984357 | None:intergenic | 40.0% | |
| TAGGGTCAAAATCGTCAAAC+TGG | + | chr1_4:21984363-21984382 | None:intergenic | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | + | chr1_4:21984514-21984533 | None:intergenic | 40.0% | |
| TCAATCATCACATTCTTGGC+AGG | - | chr1_4:21984532-21984551 | Msa0156190:intron | 40.0% | |
| AGGGAGTCCATTTATTAGCA+TGG | - | chr1_4:21984585-21984604 | Msa0156190:intron | 40.0% | |
| CAAGTAAATGCGAGTATGGT+AGG | + | chr1_4:21984752-21984771 | None:intergenic | 40.0% | |
| !! | GTGTTTGAAAGAGTGTTCGA+GGG | + | chr1_4:21984800-21984819 | None:intergenic | 40.0% |
| !! | AGTGTTTGAAAGAGTGTTCG+AGG | + | chr1_4:21984801-21984820 | None:intergenic | 40.0% |
| CAGGATATAAGACACGTCTT+CGG | + | chr1_4:21984984-21985003 | None:intergenic | 40.0% | |
| CATGTGCAGGTTCCTTAATA+AGG | - | chr1_4:21985190-21985209 | Msa0156190:CDS | 40.0% | |
| GTTCCTTAATAAGGCATGTG+TGG | - | chr1_4:21985199-21985218 | Msa0156190:CDS | 40.0% | |
| ! | TGTCCACACATGCCTTATTA+AGG | + | chr1_4:21985205-21985224 | None:intergenic | 40.0% |
| CCCAAATAGGGATTAAGCTA+AGG | + | chr1_4:21985295-21985314 | None:intergenic | 40.0% | |
| ACTACTCTTAACAGTTCCGT+TGG | - | chr1_4:21985377-21985396 | Msa0156190:intron | 40.0% | |
| AGTTCCGTTGGCAACTTAAA+AGG | - | chr1_4:21985389-21985408 | Msa0156190:intron | 40.0% | |
| !!! | AGGACCTTTTAAGTTGCCAA+CGG | + | chr1_4:21985396-21985415 | None:intergenic | 40.0% |
| GTACATGCAGTTAAACTTGC+TGG | + | chr1_4:21985419-21985438 | None:intergenic | 40.0% | |
| AAGTTGACCAAGAATCCTAG+AGG | - | chr1_4:21985500-21985519 | Msa0156190:intron | 40.0% | |
| ! | TGAAGGAGTGTAATACCTCT+AGG | + | chr1_4:21985518-21985537 | None:intergenic | 40.0% |
| CTCCTTCAAAGAATGAGTGT+AGG | - | chr1_4:21985530-21985549 | Msa0156190:intron | 40.0% | |
| ACCCTACACTCATTCTTTGA+AGG | + | chr1_4:21985535-21985554 | None:intergenic | 40.0% | |
| !! | ACTTTTAGAGGGTGCAAAAG+TGG | - | chr1_4:21985691-21985710 | Msa0156190:intron | 40.0% |
| TCACATGTCACTGAGAAACA+TGG | - | chr1_4:21985824-21985843 | Msa0156190:intron | 40.0% | |
| AGAGTTAGAAACTTCAGCTC+TGG | + | chr1_4:21985972-21985991 | None:intergenic | 40.0% | |
| CTACATCTTTGATGAATGGC+CGG | - | chr1_4:21986073-21986092 | Msa0156190:CDS | 40.0% | |
| TACATCTTTGATGAATGGCC+GGG | - | chr1_4:21986074-21986093 | Msa0156190:CDS | 40.0% | |
| TCTGTTCTCAGATCCAAGAC+AGG | - | chr1_4:21980782-21980801 | Msa0156190:exon | 45.0% | |
| ATGCTCATCTTGGACGCTAT+TGG | - | chr1_4:21981656-21981675 | Msa0156190:intron | 45.0% | |
| GGTCCTCTTATAAAGATCGG+AGG | + | chr1_4:21981789-21981808 | None:intergenic | 45.0% | |
| !! | ACGCTTTGGCCATTGGTTTA+GGG | + | chr1_4:21981870-21981889 | None:intergenic | 45.0% |
| TTCTTTATACGGGCACGCTT+TGG | + | chr1_4:21981884-21981903 | None:intergenic | 45.0% | |
| ! | AGTAGAAAGAGCGTACAGAC+GGG | + | chr1_4:21982068-21982087 | None:intergenic | 45.0% |
| ! | CAGTAGAAAGAGCGTACAGA+CGG | + | chr1_4:21982069-21982088 | None:intergenic | 45.0% |
| ! | TCACGACATGTTTTCAGCCA+TGG | + | chr1_4:21982505-21982524 | None:intergenic | 45.0% |
| TTCCAGCATTGCTTCCTGTT+AGG | - | chr1_4:21982680-21982699 | Msa0156190:intron | 45.0% | |
| ATCCTAACAGGAAGCAATGC+TGG | + | chr1_4:21982685-21982704 | None:intergenic | 45.0% | |
| !! | CTTTCAGCACACTTTTGGGT+TGG | + | chr1_4:21983626-21983645 | None:intergenic | 45.0% |
| ! | CAACCCAAAAGTGTGCTGAA+AGG | - | chr1_4:21983624-21983643 | Msa0156190:intron | 45.0% |
| ! | ACCCAAAAGTGTGCTGAAAG+GGG | - | chr1_4:21983626-21983645 | Msa0156190:intron | 45.0% |
| ! | ACCCCTTTCAGCACACTTTT+GGG | + | chr1_4:21983630-21983649 | None:intergenic | 45.0% |
| ! | TACCCCTTTCAGCACACTTT+TGG | + | chr1_4:21983631-21983650 | None:intergenic | 45.0% |
| !! | CATTTAGGTGGCTTTAGGCT+TGG | + | chr1_4:21984211-21984230 | None:intergenic | 45.0% |
| TGCCCTCTACATTATAGCAG+TGG | - | chr1_4:21984294-21984313 | Msa0156190:intron | 45.0% | |
| GCCCTCTACATTATAGCAGT+GGG | - | chr1_4:21984295-21984314 | Msa0156190:intron | 45.0% | |
| ATTATAGCAGTGGGAACAGG+TGG | - | chr1_4:21984304-21984323 | Msa0156190:intron | 45.0% | |
| TTATAGCAGTGGGAACAGGT+GGG | - | chr1_4:21984305-21984324 | Msa0156190:intron | 45.0% | |
| AGCTCTCATTCTTGAACTGG+TGG | - | chr1_4:21984398-21984417 | Msa0156190:intron | 45.0% | |
| !! | GATAATGTGGGTTGGACTCT+TGG | - | chr1_4:21984478-21984497 | Msa0156190:intron | 45.0% |
| GGATATGCTCTTCCAACTCT+TGG | - | chr1_4:21984499-21984518 | Msa0156190:intron | 45.0% | |
| TAGCATGGCTAAGGTCATTG+TGG | - | chr1_4:21984600-21984619 | Msa0156190:intron | 45.0% | |
| AGGTCATTGTGGCAGCTATA+AGG | - | chr1_4:21984611-21984630 | Msa0156190:intron | 45.0% | |
| GGGTCCATTCCCAAAATAGT+GGG | - | chr1_4:21984873-21984892 | Msa0156190:intron | 45.0% | |
| !! | AGGTCCCACTATTTTGGGAA+TGG | + | chr1_4:21984880-21984899 | None:intergenic | 45.0% |
| ! | CATGCAGGTCCCACTATTTT+GGG | + | chr1_4:21984885-21984904 | None:intergenic | 45.0% |
| ! | TCATGCAGGTCCCACTATTT+TGG | + | chr1_4:21984886-21984905 | None:intergenic | 45.0% |
| AATAAGGCATGTGTGGACAC+TGG | - | chr1_4:21985206-21985225 | Msa0156190:CDS | 45.0% | |
| !! | CATGCAGTTAAACTTGCTGG+AGG | + | chr1_4:21985416-21985435 | None:intergenic | 45.0% |
| !! | AGTGGCTGAAGCACTTTTAG+AGG | - | chr1_4:21985679-21985698 | Msa0156190:intron | 45.0% |
| !! | GTGGCTGAAGCACTTTTAGA+GGG | - | chr1_4:21985680-21985699 | Msa0156190:intron | 45.0% |
| CATGTCACTGAGAAACATGG+TGG | - | chr1_4:21985827-21985846 | Msa0156190:intron | 45.0% | |
| !! | TAATATCTAATAAAATATAA+TGG | - | chr1_4:21981247-21981266 | Msa0156190:CDS | 5.0% |
| !! | CTTATATTAATAAAATAATA+TGG | - | chr1_4:21983200-21983219 | Msa0156190:intron | 5.0% |
| GTTCTCAGATCCAAGACAGG+TGG | - | chr1_4:21980785-21980804 | Msa0156190:exon | 50.0% | |
| TCAGATCCAAGACAGGTGGT+TGG | - | chr1_4:21980789-21980808 | Msa0156190:CDS | 50.0% | |
| AGCTTTCCAACCACCTGTCT+TGG | + | chr1_4:21980798-21980817 | None:intergenic | 50.0% | |
| CGGTCATATCGATATGACCG+TGG | - | chr1_4:21981054-21981073 | Msa0156190:CDS | 50.0% | |
| TGGAAGAGATGACAGTGCCT+TGG | + | chr1_4:21981573-21981592 | None:intergenic | 50.0% | |
| !! | CACGCTTTGGCCATTGGTTT+AGG | + | chr1_4:21981871-21981890 | None:intergenic | 50.0% |
| !! | AGGTGGCTTTAGGCTTGGTA+GGG | + | chr1_4:21984206-21984225 | None:intergenic | 50.0% |
| !! | TAGGTGGCTTTAGGCTTGGT+AGG | + | chr1_4:21984207-21984226 | None:intergenic | 50.0% |
| GTCAAACTGGTCAGCACCAA+TGG | + | chr1_4:21984350-21984369 | None:intergenic | 50.0% | |
| GGGGTCCATTCCCAAAATAG+TGG | - | chr1_4:21984872-21984891 | Msa0156190:intron | 50.0% | |
| ACGTCTTCGGCCAAGCAAAA+TGG | + | chr1_4:21984971-21984990 | None:intergenic | 50.0% | |
| TGACACTAACACGTCGACAC+TGG | + | chr1_4:21985049-21985068 | None:intergenic | 50.0% | |
| CCAAGGCTCTTCATGCTTTC+TGG | + | chr1_4:21985737-21985756 | None:intergenic | 50.0% | |
| ! | CCAGAAAGCATGAAGAGCCT+TGG | - | chr1_4:21985734-21985753 | Msa0156190:intron | 50.0% |
| ACTGAGAAACATGGTGGTCG+AGG | - | chr1_4:21985833-21985852 | Msa0156190:intron | 50.0% | |
| CTGAGAAACATGGTGGTCGA+GGG | - | chr1_4:21985834-21985853 | Msa0156190:intron | 50.0% | |
| GGGCAGACCATTCCCAATGT+CGG | + | chr1_4:21982538-21982557 | None:intergenic | 55.0% | |
| GGGACACGATTGTTATGCCG+TGG | + | chr1_4:21982736-21982755 | None:intergenic | 55.0% | |
| AGAAACATGGTGGTCGAGGG+TGG | - | chr1_4:21985837-21985856 | Msa0156190:intron | 55.0% | |
| TACGGGCACGCTTTGGCCAT+TGG | + | chr1_4:21981877-21981896 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 21980719 | 21986112 | 21980719 | ID=Msa0156190;Name=Msa0156190 |
| chr1_4 | mRNA | 21980719 | 21986112 | 21980719 | ID=Msa0156190-mRNA-1;Parent=Msa0156190;Name=Msa0156190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|4|67|581 |
| chr1_4 | exon | 21980719 | 21981632 | 21980719 | ID=Msa0156190-mRNA-1:exon:7909;Parent=Msa0156190-mRNA-1 |
| chr1_4 | exon | 21982091 | 21982656 | 21982091 | ID=Msa0156190-mRNA-1:exon:7908;Parent=Msa0156190-mRNA-1 |
| chr1_4 | exon | 21985120 | 21985337 | 21985120 | ID=Msa0156190-mRNA-1:exon:7907;Parent=Msa0156190-mRNA-1 |
| chr1_4 | exon | 21985998 | 21986112 | 21985998 | ID=Msa0156190-mRNA-1:exon:7906;Parent=Msa0156190-mRNA-1 |
| chr1_4 | CDS | 21985998 | 21986112 | 21985998 | ID=Msa0156190-mRNA-1:cds;Parent=Msa0156190-mRNA-1 |
| chr1_4 | CDS | 21985120 | 21985337 | 21985120 | ID=Msa0156190-mRNA-1:cds;Parent=Msa0156190-mRNA-1 |
| chr1_4 | CDS | 21982091 | 21982656 | 21982091 | ID=Msa0156190-mRNA-1:cds;Parent=Msa0156190-mRNA-1 |
| chr1_4 | CDS | 21980786 | 21981632 | 21980786 | ID=Msa0156190-mRNA-1:cds;Parent=Msa0156190-mRNA-1 |
| chr1_4 | three_prime_UTR | 21980719 | 21980785 | 21980719 | ID=Msa0156190-mRNA-1:three_prime_utr;Parent=Msa0156190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
