Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331430 | XP_013464497.2 | 98.077 | 52 | 1 | 0 | 50 | 101 | 165 | 216 | 6.33e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0109970 | Msa0331430 | 0.809003 | 2.345111e-50 | -8.615850e-47 |
| Msa0142230 | Msa0331430 | 0.824033 | 1.005132e-53 | -8.615850e-47 |
| Msa0154580 | Msa0331430 | 0.811730 | 6.049956e-51 | -8.615850e-47 |
| Msa0156170 | Msa0331430 | 0.811969 | 5.366831e-51 | -8.615850e-47 |
| Msa0156190 | Msa0331430 | 0.805401 | 1.359167e-49 | -8.615850e-47 |
| Msa0243940 | Msa0331430 | 0.800355 | 1.498180e-48 | -8.615850e-47 |
| Msa0254190 | Msa0331430 | 0.824461 | 7.971802e-54 | -8.615850e-47 |
| Msa0284810 | Msa0331430 | 0.802776 | 4.777646e-49 | -8.615850e-47 |
| Msa0331420 | Msa0331430 | 0.826814 | 2.206934e-54 | -8.615850e-47 |
| Msa0331430 | Msa0533430 | 0.818038 | 2.413963e-52 | -8.615850e-47 |
| Msa0331430 | Msa0580610 | 0.818254 | 2.157499e-52 | -8.615850e-47 |
| Msa0331430 | Msa0629930 | 0.822915 | 1.834749e-53 | -8.615850e-47 |
| Msa0331430 | Msa0754180 | 0.832495 | 9.149467e-56 | -8.615850e-47 |
| Msa0331430 | Msa0782080 | 0.815579 | 8.602157e-52 | -8.615850e-47 |
| Msa0331430 | Msa0784580 | 0.823635 | 1.245401e-53 | -8.615850e-47 |
| Msa0331430 | Msa0808180 | 0.828376 | 9.304048e-55 | -8.615850e-47 |
| Msa0331430 | Msa0818010 | 0.867735 | 1.099056e-65 | -8.615850e-47 |
| Msa0331430 | Msa0818030 | 0.858603 | 7.353063e-63 | -8.615850e-47 |
| Msa0331430 | Msa0819740 | 0.815624 | 8.403849e-52 | -8.615850e-47 |
| Msa0331430 | Msa0883390 | 0.807803 | 4.227483e-50 | -8.615850e-47 |
| Msa0331430 | Msa0883410 | 0.805500 | 1.295369e-49 | -8.615850e-47 |
| Msa0331430 | Msa0912500 | 0.808315 | 3.290166e-50 | -8.615850e-47 |
| Msa0331430 | Msa0986820 | 0.806741 | 7.099742e-50 | -8.615850e-47 |
| Msa0331430 | Msa1006250 | 0.810317 | 1.223911e-50 | -8.615850e-47 |
| Msa0331430 | Msa1006400 | 0.863206 | 2.936481e-64 | -8.615850e-47 |
| Msa0331430 | Msa1006460 | 0.834831 | 2.387969e-56 | -8.615850e-47 |
| Msa0331430 | Msa1006600 | 0.810608 | 1.059208e-50 | -8.615850e-47 |
| Msa0331430 | Msa1006680 | 0.815975 | 7.018467e-52 | -8.615850e-47 |
| Msa0331430 | Msa1033670 | 0.810831 | 9.479700e-51 | -8.615850e-47 |
| Msa0331430 | Msa1048490 | 0.831681 | 1.454503e-55 | -8.615850e-47 |
| Msa0331430 | Msa1048610 | 0.815823 | 7.589861e-52 | -8.615850e-47 |
| Msa0331430 | Msa1050480 | 0.801396 | 9.182553e-49 | -8.615850e-47 |
| Msa0331430 | Msa1050490 | 0.812385 | 4.354398e-51 | -8.615850e-47 |
| Msa0331430 | Msa1180280 | 0.815590 | 8.551763e-52 | -8.615850e-47 |
| Msa0331430 | Msa1247740 | 0.814929 | 1.199255e-51 | -8.615850e-47 |
| Msa0331430 | Msa1285830 | 0.812214 | 4.745597e-51 | -8.615850e-47 |
| Msa0331430 | Msa1359820 | 0.812460 | 4.193667e-51 | -8.615850e-47 |
| Msa0331430 | Msa1384320 | 0.800101 | 1.688118e-48 | -8.615850e-47 |
| Msa0331430 | Msa1444370 | 0.809446 | 1.884419e-50 | -8.615850e-47 |
| Msa0331430 | Msa1459170 | 0.821649 | 3.608053e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331430 | MtrunA17_Chr2g0314471 | 98.077 | 52 | 1 | 0 | 50 | 101 | 165 | 216 | 5.82e-31 | 112 |
| Msa0331430 | MtrunA17_Chr2g0314451 | 80.769 | 52 | 10 | 0 | 50 | 101 | 164 | 215 | 4.69e-25 | 96.7 |
| Msa0331430 | MtrunA17_Chr2g0314461 | 75.000 | 52 | 13 | 0 | 50 | 101 | 165 | 216 | 9.85e-22 | 87.8 |
| Msa0331430 | MtrunA17_Chr8g0368171 | 57.627 | 59 | 20 | 1 | 50 | 103 | 147 | 205 | 5.21e-20 | 80.5 |
| Msa0331430 | MtrunA17_Chr8g0368161 | 58.182 | 55 | 20 | 1 | 50 | 101 | 202 | 256 | 1.94e-16 | 73.2 |
| Msa0331430 | MtrunA17_Chr8g0380511 | 60.000 | 55 | 19 | 1 | 50 | 101 | 169 | 223 | 2.30e-16 | 72.8 |
| Msa0331430 | MtrunA17_Chr5g0413131 | 58.182 | 55 | 20 | 1 | 50 | 101 | 218 | 272 | 2.34e-16 | 72.8 |
| Msa0331430 | MtrunA17_Chr8g0368241 | 55.738 | 61 | 18 | 2 | 41 | 98 | 165 | 219 | 6.95e-16 | 71.6 |
| Msa0331430 | MtrunA17_Chr3g0117271 | 61.818 | 55 | 18 | 2 | 50 | 101 | 251 | 305 | 9.88e-16 | 71.2 |
| Msa0331430 | MtrunA17_Chr4g0058771 | 60.000 | 55 | 19 | 2 | 50 | 101 | 235 | 289 | 1.25e-15 | 70.9 |
| Msa0331430 | MtrunA17_Chr2g0309251 | 58.182 | 55 | 20 | 1 | 50 | 101 | 180 | 234 | 2.31e-15 | 70.1 |
| Msa0331430 | MtrunA17_Chr8g0368351 | 52.542 | 59 | 24 | 1 | 49 | 103 | 191 | 249 | 3.11e-15 | 68.6 |
| Msa0331430 | MtrunA17_Chr2g0326371 | 56.897 | 58 | 20 | 2 | 50 | 102 | 113 | 170 | 7.90e-15 | 68.2 |
| Msa0331430 | MtrunA17_Chr8g0368221 | 48.529 | 68 | 27 | 2 | 33 | 98 | 131 | 192 | 1.06e-14 | 67.4 |
| Msa0331430 | MtrunA17_Chr7g0274951 | 62.000 | 50 | 15 | 1 | 56 | 101 | 199 | 248 | 2.19e-13 | 64.3 |
| Msa0331430 | MtrunA17_Chr1g0189961 | 62.222 | 45 | 13 | 1 | 61 | 101 | 215 | 259 | 2.20e-11 | 58.5 |
| Msa0331430 | MtrunA17_Chr8g0368201 | 56.604 | 53 | 19 | 2 | 50 | 99 | 60 | 111 | 5.57e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331430 | AT1G10750.2 | 58.929 | 56 | 20 | 2 | 50 | 102 | 221 | 276 | 1.62e-18 | 79.0 |
| Msa0331430 | AT1G10750.1 | 60.000 | 55 | 19 | 2 | 50 | 101 | 221 | 275 | 1.18e-17 | 77.0 |
| Msa0331430 | AT1G70550.1 | 52.941 | 68 | 23 | 2 | 37 | 101 | 212 | 273 | 6.65e-17 | 74.7 |
| Msa0331430 | AT1G55360.1 | 60.000 | 55 | 19 | 1 | 50 | 101 | 176 | 230 | 1.31e-16 | 73.9 |
| Msa0331430 | AT1G23340.2 | 58.182 | 55 | 20 | 1 | 50 | 101 | 163 | 217 | 3.45e-16 | 72.8 |
| Msa0331430 | AT1G23340.1 | 58.182 | 55 | 20 | 1 | 50 | 101 | 163 | 217 | 3.45e-16 | 72.8 |
| Msa0331430 | AT3G13510.1 | 58.182 | 55 | 20 | 1 | 50 | 101 | 173 | 227 | 5.64e-16 | 72.0 |
| Msa0331430 | AT1G70550.2 | 60.000 | 55 | 19 | 1 | 50 | 101 | 219 | 273 | 6.68e-16 | 71.2 |
| Msa0331430 | AT1G23340.3 | 58.182 | 55 | 20 | 1 | 50 | 101 | 163 | 217 | 1.24e-15 | 70.5 |
| Msa0331430 | AT5G56530.2 | 56.364 | 55 | 21 | 1 | 50 | 101 | 174 | 228 | 7.58e-15 | 68.9 |
| Msa0331430 | AT5G56530.1 | 56.364 | 55 | 21 | 1 | 50 | 101 | 174 | 228 | 7.58e-15 | 68.9 |
| Msa0331430 | AT5G50150.1 | 56.364 | 55 | 21 | 1 | 50 | 101 | 174 | 228 | 1.43e-14 | 68.2 |
| Msa0331430 | AT5G18460.1 | 48.485 | 66 | 25 | 2 | 40 | 101 | 178 | 238 | 5.90e-13 | 63.5 |
| Msa0331430 | AT2G44210.1 | 58.182 | 55 | 20 | 1 | 50 | 101 | 168 | 222 | 7.83e-13 | 63.2 |
| Msa0331430 | AT2G44210.2 | 58.182 | 55 | 20 | 1 | 50 | 101 | 198 | 252 | 7.96e-13 | 63.2 |
| Msa0331430 | AT2G03930.2 | 51.724 | 58 | 23 | 2 | 50 | 102 | 44 | 101 | 9.77e-12 | 58.2 |
Find 22 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGCTTGTCTCAAATA+TGG | 0.191747 | 2_4:-47165298 | Msa0331430:CDS |
| CATTCATATGGGTCTGTTAC+TGG | 0.284157 | 2_4:-47165386 | Msa0331430:CDS |
| TCATGGTCATGTTGAATCTT+TGG | 0.364742 | 2_4:-47167010 | Msa0331430:CDS |
| TACACTGCACAGCATTCATA+TGG | 0.392304 | 2_4:-47165398 | Msa0331430:intron |
| TAATGCAAATGATGGTGAAT+TGG | 0.447774 | 2_4:-47167118 | Msa0331430:CDS |
| GTTACTGGAGATCGATACTA+TGG | 0.463393 | 2_4:-47165371 | Msa0331430:CDS |
| CAGTATTGAAGCTGGTTGGC+AGG | 0.470505 | 2_4:-47165252 | Msa0331430:CDS |
| AATACTGTTCTCATTTCCAT+TGG | 0.479089 | 2_4:+47165268 | None:intergenic |
| CAAAGGCTACAATCAATTTG+TGG | 0.489320 | 2_4:-47165346 | Msa0331430:CDS |
| ATTCAGCTTGTCTCAAATAT+GGG | 0.509437 | 2_4:-47165297 | Msa0331430:CDS |
| TACTTGAAGTCCATGCATCA+TGG | 0.513792 | 2_4:-47167027 | Msa0331430:CDS |
| AAAGGCTACAATCAATTTGT+GGG | 0.531509 | 2_4:-47165345 | Msa0331430:CDS |
| CAAATATGGGTCCTCGCCAA+TGG | 0.537462 | 2_4:-47165284 | Msa0331430:CDS |
| CAATTTGTGGGCCCCACATG+TGG | 0.565259 | 2_4:-47165333 | Msa0331430:CDS |
| ACACTGCACAGCATTCATAT+GGG | 0.580123 | 2_4:-47165397 | Msa0331430:intron |
| ATGCTTGATAATGCAAATGA+TGG | 0.591100 | 2_4:-47167126 | Msa0331430:CDS |
| TTCAACATGACCATGATGCA+TGG | 0.592697 | 2_4:+47167017 | None:intergenic |
| AGAACAGTATTGAAGCTGGT+TGG | 0.594350 | 2_4:-47165256 | Msa0331430:CDS |
| TGTTCTCATTTCCATTGGCG+AGG | 0.618075 | 2_4:+47165273 | None:intergenic |
| AATGAGAACAGTATTGAAGC+TGG | 0.620381 | 2_4:-47165260 | Msa0331430:CDS |
| AGATCGATACTATGGAGCAA+AGG | 0.649389 | 2_4:-47165363 | Msa0331430:CDS |
| TTGGTGAAGATATTATATGA+TGG | 0.655314 | 2_4:-47167099 | Msa0331430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGAAAGAACTATTTAA+TGG | + | chr2_4:47166357-47166376 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAAATGAGAAA+TGG | - | chr2_4:47166933-47166952 | Msa0331430:intron | 15.0% |
| !! | TAAAAGAAAGAACTATTTAA+TGG | + | chr2_4:47166357-47166376 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAAATGAGAAA+TGG | - | chr2_4:47166933-47166952 | Msa0331430:intron | 15.0% |
| !!! | TTATTATTTTAGTGGAATCT+CGG | - | chr2_4:47165443-47165462 | Msa0331430:intron | 20.0% |
| !!! | CTAGTTTTTTTTTTTAAACC+AGG | + | chr2_4:47166207-47166226 | None:intergenic | 20.0% |
| !! | AGTGCAATACAAATATTTAA+CGG | + | chr2_4:47166574-47166593 | None:intergenic | 20.0% |
| !! | ATGTATTGCCAATTAAATTA+AGG | - | chr2_4:47166778-47166797 | Msa0331430:intron | 20.0% |
| !! | CTTAATGACCTTAATTTAAT+TGG | + | chr2_4:47166789-47166808 | None:intergenic | 20.0% |
| !!! | TTATTATTTTAGTGGAATCT+CGG | - | chr2_4:47165443-47165462 | Msa0331430:intron | 20.0% |
| !!! | CTAGTTTTTTTTTTTAAACC+AGG | + | chr2_4:47166207-47166226 | None:intergenic | 20.0% |
| !! | AGTGCAATACAAATATTTAA+CGG | + | chr2_4:47166574-47166593 | None:intergenic | 20.0% |
| !! | ATGTATTGCCAATTAAATTA+AGG | - | chr2_4:47166778-47166797 | Msa0331430:intron | 20.0% |
| !! | CTTAATGACCTTAATTTAAT+TGG | + | chr2_4:47166789-47166808 | None:intergenic | 20.0% |
| ! | TTGGTGAAGATATTATATGA+TGG | - | chr2_4:47165271-47165290 | Msa0331430:CDS | 25.0% |
| ! | TCATATTTGACTATGTGATT+TGG | - | chr2_4:47165552-47165571 | Msa0331430:intron | 25.0% |
| ! | ATAATCAAGCAACATATACA+AGG | + | chr2_4:47165631-47165650 | None:intergenic | 25.0% |
| ! | AACTTAAGAATGATTAAGCT+TGG | - | chr2_4:47165699-47165718 | Msa0331430:intron | 25.0% |
| ! | GTATGATAATATTCACATGA+AGG | - | chr2_4:47165737-47165756 | Msa0331430:intron | 25.0% |
| !!! | AATCAAGTAAAAAGCATTCA+AGG | + | chr2_4:47165809-47165828 | None:intergenic | 25.0% |
| ! | CAACCATAGTATTTGATTAT+AGG | + | chr2_4:47166894-47166913 | None:intergenic | 25.0% |
| ! | TTGGTGAAGATATTATATGA+TGG | - | chr2_4:47165271-47165290 | Msa0331430:CDS | 25.0% |
| ! | TCATATTTGACTATGTGATT+TGG | - | chr2_4:47165552-47165571 | Msa0331430:intron | 25.0% |
| ! | ATAATCAAGCAACATATACA+AGG | + | chr2_4:47165631-47165650 | None:intergenic | 25.0% |
| ! | AACTTAAGAATGATTAAGCT+TGG | - | chr2_4:47165699-47165718 | Msa0331430:intron | 25.0% |
| ! | GTATGATAATATTCACATGA+AGG | - | chr2_4:47165737-47165756 | Msa0331430:intron | 25.0% |
| !!! | AATCAAGTAAAAAGCATTCA+AGG | + | chr2_4:47165809-47165828 | None:intergenic | 25.0% |
| ! | CAACCATAGTATTTGATTAT+AGG | + | chr2_4:47166894-47166913 | None:intergenic | 25.0% |
| !! | ATGCTTGATAATGCAAATGA+TGG | - | chr2_4:47165244-47165263 | Msa0331430:CDS | 30.0% |
| ! | TAATGCAAATGATGGTGAAT+TGG | - | chr2_4:47165252-47165271 | Msa0331430:CDS | 30.0% |
| !!! | GGTGGTGTTTATTATTTTAG+TGG | - | chr2_4:47165435-47165454 | Msa0331430:intron | 30.0% |
| AAATTGCATGCACTTGAAAT+TGG | - | chr2_4:47165520-47165539 | Msa0331430:intron | 30.0% | |
| GTCAATCTAAAAGACATGTT+TGG | + | chr2_4:47165954-47165973 | None:intergenic | 30.0% | |
| ! | TTTTGTATGACTCAAATGGA+TGG | + | chr2_4:47166042-47166061 | None:intergenic | 30.0% |
| !! | CAAGTTTTGTATGACTCAAA+TGG | + | chr2_4:47166046-47166065 | None:intergenic | 30.0% |
| AAAAACTCGTACATTCACAT+CGG | - | chr2_4:47166229-47166248 | Msa0331430:intron | 30.0% | |
| AAGCAAATAAAACCTGCAAT+AGG | + | chr2_4:47166412-47166431 | None:intergenic | 30.0% | |
| ACACAATTCTGCAACAAATA+CGG | + | chr2_4:47166745-47166764 | None:intergenic | 30.0% | |
| GCACCTATAATCAAATACTA+TGG | - | chr2_4:47166888-47166907 | Msa0331430:intron | 30.0% | |
| AAAGGCTACAATCAATTTGT+GGG | - | chr2_4:47167025-47167044 | Msa0331430:CDS | 30.0% | |
| AATTCAGCTTGTCTCAAATA+TGG | - | chr2_4:47167072-47167091 | Msa0331430:CDS | 30.0% | |
| ATTCAGCTTGTCTCAAATAT+GGG | - | chr2_4:47167073-47167092 | Msa0331430:CDS | 30.0% | |
| AATACTGTTCTCATTTCCAT+TGG | + | chr2_4:47167105-47167124 | None:intergenic | 30.0% | |
| !! | ATGCTTGATAATGCAAATGA+TGG | - | chr2_4:47165244-47165263 | Msa0331430:CDS | 30.0% |
| ! | TAATGCAAATGATGGTGAAT+TGG | - | chr2_4:47165252-47165271 | Msa0331430:CDS | 30.0% |
| !!! | GGTGGTGTTTATTATTTTAG+TGG | - | chr2_4:47165435-47165454 | Msa0331430:intron | 30.0% |
| AAATTGCATGCACTTGAAAT+TGG | - | chr2_4:47165520-47165539 | Msa0331430:intron | 30.0% | |
| GTCAATCTAAAAGACATGTT+TGG | + | chr2_4:47165954-47165973 | None:intergenic | 30.0% | |
| ! | TTTTGTATGACTCAAATGGA+TGG | + | chr2_4:47166042-47166061 | None:intergenic | 30.0% |
| !! | CAAGTTTTGTATGACTCAAA+TGG | + | chr2_4:47166046-47166065 | None:intergenic | 30.0% |
| AAAAACTCGTACATTCACAT+CGG | - | chr2_4:47166229-47166248 | Msa0331430:intron | 30.0% | |
| AAGCAAATAAAACCTGCAAT+AGG | + | chr2_4:47166412-47166431 | None:intergenic | 30.0% | |
| ACACAATTCTGCAACAAATA+CGG | + | chr2_4:47166745-47166764 | None:intergenic | 30.0% | |
| GCACCTATAATCAAATACTA+TGG | - | chr2_4:47166888-47166907 | Msa0331430:intron | 30.0% | |
| AAAGGCTACAATCAATTTGT+GGG | - | chr2_4:47167025-47167044 | Msa0331430:CDS | 30.0% | |
| AATTCAGCTTGTCTCAAATA+TGG | - | chr2_4:47167072-47167091 | Msa0331430:CDS | 30.0% | |
| ATTCAGCTTGTCTCAAATAT+GGG | - | chr2_4:47167073-47167092 | Msa0331430:CDS | 30.0% | |
| AATACTGTTCTCATTTCCAT+TGG | + | chr2_4:47167105-47167124 | None:intergenic | 30.0% | |
| TCATGGTCATGTTGAATCTT+TGG | - | chr2_4:47165360-47165379 | Msa0331430:CDS | 35.0% | |
| TCTTTGGTGAAGAACGTAAT+TGG | - | chr2_4:47165376-47165395 | Msa0331430:CDS | 35.0% | |
| GTGGTGATTATTACGTTAGT+TGG | - | chr2_4:47165398-47165417 | Msa0331430:intron | 35.0% | |
| !! | TAGTTGGTGAAGAACGTAAT+TGG | - | chr2_4:47165414-47165433 | Msa0331430:intron | 35.0% |
| GTTATCTCCAAATCCAAACT+TGG | - | chr2_4:47165471-47165490 | Msa0331430:intron | 35.0% | |
| !! | GATTTGGTGATTATGTGCAT+TGG | - | chr2_4:47165568-47165587 | Msa0331430:intron | 35.0% |
| ! | ATTATGTGCATTGGTGAACT+TGG | - | chr2_4:47165577-47165596 | Msa0331430:intron | 35.0% |
| TGGTAAATGTTGTGACTATG+TGG | - | chr2_4:47165597-47165616 | Msa0331430:intron | 35.0% | |
| TCACATGAAGGTAGTATTCT+AGG | - | chr2_4:47165749-47165768 | Msa0331430:intron | 35.0% | |
| TATCAAACGCAGTGATTGTT+TGG | - | chr2_4:47165848-47165867 | Msa0331430:intron | 35.0% | |
| CATTCATACAAATAGGCAGA+CGG | + | chr2_4:47165878-47165897 | None:intergenic | 35.0% | |
| GTCTGCCTATTTGTATGAAT+GGG | - | chr2_4:47165877-47165896 | Msa0331430:intron | 35.0% | |
| GTCTACCCATTCATACAAAT+AGG | + | chr2_4:47165885-47165904 | None:intergenic | 35.0% | |
| CAAAGGCTACAATCAATTTG+TGG | - | chr2_4:47167024-47167043 | Msa0331430:CDS | 35.0% | |
| ! | ATTTTCATCTTCCACATGTG+GGG | + | chr2_4:47167051-47167070 | None:intergenic | 35.0% |
| ! | CATTTTCATCTTCCACATGT+GGG | + | chr2_4:47167052-47167071 | None:intergenic | 35.0% |
| ! | TCATTTTCATCTTCCACATG+TGG | + | chr2_4:47167053-47167072 | None:intergenic | 35.0% |
| ! | AATGAGAACAGTATTGAAGC+TGG | - | chr2_4:47167110-47167129 | Msa0331430:CDS | 35.0% |
| TCATGGTCATGTTGAATCTT+TGG | - | chr2_4:47165360-47165379 | Msa0331430:CDS | 35.0% | |
| TCTTTGGTGAAGAACGTAAT+TGG | - | chr2_4:47165376-47165395 | Msa0331430:CDS | 35.0% | |
| GTGGTGATTATTACGTTAGT+TGG | - | chr2_4:47165398-47165417 | Msa0331430:intron | 35.0% | |
| !! | TAGTTGGTGAAGAACGTAAT+TGG | - | chr2_4:47165414-47165433 | Msa0331430:intron | 35.0% |
| GTTATCTCCAAATCCAAACT+TGG | - | chr2_4:47165471-47165490 | Msa0331430:intron | 35.0% | |
| !! | GATTTGGTGATTATGTGCAT+TGG | - | chr2_4:47165568-47165587 | Msa0331430:intron | 35.0% |
| ! | ATTATGTGCATTGGTGAACT+TGG | - | chr2_4:47165577-47165596 | Msa0331430:intron | 35.0% |
| TGGTAAATGTTGTGACTATG+TGG | - | chr2_4:47165597-47165616 | Msa0331430:intron | 35.0% | |
| TCACATGAAGGTAGTATTCT+AGG | - | chr2_4:47165749-47165768 | Msa0331430:intron | 35.0% | |
| TATCAAACGCAGTGATTGTT+TGG | - | chr2_4:47165848-47165867 | Msa0331430:intron | 35.0% | |
| CATTCATACAAATAGGCAGA+CGG | + | chr2_4:47165878-47165897 | None:intergenic | 35.0% | |
| GTCTGCCTATTTGTATGAAT+GGG | - | chr2_4:47165877-47165896 | Msa0331430:intron | 35.0% | |
| GTCTACCCATTCATACAAAT+AGG | + | chr2_4:47165885-47165904 | None:intergenic | 35.0% | |
| CAAAGGCTACAATCAATTTG+TGG | - | chr2_4:47167024-47167043 | Msa0331430:CDS | 35.0% | |
| ! | ATTTTCATCTTCCACATGTG+GGG | + | chr2_4:47167051-47167070 | None:intergenic | 35.0% |
| ! | CATTTTCATCTTCCACATGT+GGG | + | chr2_4:47167052-47167071 | None:intergenic | 35.0% |
| ! | TCATTTTCATCTTCCACATG+TGG | + | chr2_4:47167053-47167072 | None:intergenic | 35.0% |
| ! | AATGAGAACAGTATTGAAGC+TGG | - | chr2_4:47167110-47167129 | Msa0331430:CDS | 35.0% |
| TACTTGAAGTCCATGCATCA+TGG | - | chr2_4:47165343-47165362 | Msa0331430:CDS | 40.0% | |
| TTCAACATGACCATGATGCA+TGG | + | chr2_4:47165356-47165375 | None:intergenic | 40.0% | |
| TTGGTGAAGAACGTAATTGG+TGG | - | chr2_4:47165379-47165398 | Msa0331430:CDS | 40.0% | |
| TTGGTGAAGAACGTAATTGG+TGG | - | chr2_4:47165379-47165398 | Msa0331430:CDS | 40.0% | |
| TGTGGTACCAAGTTTGGATT+TGG | + | chr2_4:47165481-47165500 | None:intergenic | 40.0% | |
| TAGACACTTCTACATGCATG+TGG | + | chr2_4:47165499-47165518 | None:intergenic | 40.0% | |
| CGTCTGCCTATTTGTATGAA+TGG | - | chr2_4:47165876-47165895 | Msa0331430:intron | 40.0% | |
| TATTGCTTGTGAGTTGCTTG+AGG | - | chr2_4:47165925-47165944 | Msa0331430:intron | 40.0% | |
| TCGAGTTCGAACATGAAGAT+TGG | + | chr2_4:47165976-47165995 | None:intergenic | 40.0% | |
| TCATGTTCGAACTCGAGTTT+AGG | - | chr2_4:47165980-47165999 | Msa0331430:intron | 40.0% | |
| GGCGCGATGCTAATATTTAT+TGG | + | chr2_4:47166391-47166410 | None:intergenic | 40.0% | |
| TACACTGCACAGCATTCATA+TGG | - | chr2_4:47166972-47166991 | Msa0331430:intron | 40.0% | |
| ACACTGCACAGCATTCATAT+GGG | - | chr2_4:47166973-47166992 | Msa0331430:intron | 40.0% | |
| CATTCATATGGGTCTGTTAC+TGG | - | chr2_4:47166984-47167003 | Msa0331430:intron | 40.0% | |
| GTTACTGGAGATCGATACTA+TGG | - | chr2_4:47166999-47167018 | Msa0331430:intron | 40.0% | |
| AGATCGATACTATGGAGCAA+AGG | - | chr2_4:47167007-47167026 | Msa0331430:CDS | 40.0% | |
| ! | AGAACAGTATTGAAGCTGGT+TGG | - | chr2_4:47167114-47167133 | Msa0331430:CDS | 40.0% |
| TACTTGAAGTCCATGCATCA+TGG | - | chr2_4:47165343-47165362 | Msa0331430:CDS | 40.0% | |
| TTCAACATGACCATGATGCA+TGG | + | chr2_4:47165356-47165375 | None:intergenic | 40.0% | |
| TTGGTGAAGAACGTAATTGG+TGG | - | chr2_4:47165379-47165398 | Msa0331430:CDS | 40.0% | |
| TTGGTGAAGAACGTAATTGG+TGG | - | chr2_4:47165379-47165398 | Msa0331430:CDS | 40.0% | |
| TGTGGTACCAAGTTTGGATT+TGG | + | chr2_4:47165481-47165500 | None:intergenic | 40.0% | |
| TAGACACTTCTACATGCATG+TGG | + | chr2_4:47165499-47165518 | None:intergenic | 40.0% | |
| CGTCTGCCTATTTGTATGAA+TGG | - | chr2_4:47165876-47165895 | Msa0331430:intron | 40.0% | |
| TATTGCTTGTGAGTTGCTTG+AGG | - | chr2_4:47165925-47165944 | Msa0331430:intron | 40.0% | |
| TCGAGTTCGAACATGAAGAT+TGG | + | chr2_4:47165976-47165995 | None:intergenic | 40.0% | |
| TCATGTTCGAACTCGAGTTT+AGG | - | chr2_4:47165980-47165999 | Msa0331430:intron | 40.0% | |
| GGCGCGATGCTAATATTTAT+TGG | + | chr2_4:47166391-47166410 | None:intergenic | 40.0% | |
| TACACTGCACAGCATTCATA+TGG | - | chr2_4:47166972-47166991 | Msa0331430:intron | 40.0% | |
| ACACTGCACAGCATTCATAT+GGG | - | chr2_4:47166973-47166992 | Msa0331430:intron | 40.0% | |
| CATTCATATGGGTCTGTTAC+TGG | - | chr2_4:47166984-47167003 | Msa0331430:intron | 40.0% | |
| GTTACTGGAGATCGATACTA+TGG | - | chr2_4:47166999-47167018 | Msa0331430:intron | 40.0% | |
| AGATCGATACTATGGAGCAA+AGG | - | chr2_4:47167007-47167026 | Msa0331430:CDS | 40.0% | |
| ! | AGAACAGTATTGAAGCTGGT+TGG | - | chr2_4:47167114-47167133 | Msa0331430:CDS | 40.0% |
| CATGCATGTGGTACCAAGTT+TGG | + | chr2_4:47165487-47165506 | None:intergenic | 45.0% | |
| AATCTTTGCAGTTCGCTGTG+TGG | - | chr2_4:47166173-47166192 | Msa0331430:intron | 45.0% | |
| ACATCGGTCACATAACATCG+CGG | - | chr2_4:47166245-47166264 | Msa0331430:intron | 45.0% | |
| TGTTCTCATTTCCATTGGCG+AGG | + | chr2_4:47167100-47167119 | None:intergenic | 45.0% | |
| CATGCATGTGGTACCAAGTT+TGG | + | chr2_4:47165487-47165506 | None:intergenic | 45.0% | |
| AATCTTTGCAGTTCGCTGTG+TGG | - | chr2_4:47166173-47166192 | Msa0331430:intron | 45.0% | |
| ACATCGGTCACATAACATCG+CGG | - | chr2_4:47166245-47166264 | Msa0331430:intron | 45.0% | |
| TGTTCTCATTTCCATTGGCG+AGG | + | chr2_4:47167100-47167119 | None:intergenic | 45.0% | |
| CGCTGTGTGGATGATATACC+TGG | - | chr2_4:47166186-47166205 | Msa0331430:intron | 50.0% | |
| ATTAGCATCGCGCCTATTGC+AGG | - | chr2_4:47166397-47166416 | Msa0331430:intron | 50.0% | |
| CAAATATGGGTCCTCGCCAA+TGG | - | chr2_4:47167086-47167105 | Msa0331430:CDS | 50.0% | |
| ! | CAGTATTGAAGCTGGTTGGC+AGG | - | chr2_4:47167118-47167137 | Msa0331430:CDS | 50.0% |
| CGCTGTGTGGATGATATACC+TGG | - | chr2_4:47166186-47166205 | Msa0331430:intron | 50.0% | |
| ATTAGCATCGCGCCTATTGC+AGG | - | chr2_4:47166397-47166416 | Msa0331430:intron | 50.0% | |
| CAAATATGGGTCCTCGCCAA+TGG | - | chr2_4:47167086-47167105 | Msa0331430:CDS | 50.0% | |
| ! | CAGTATTGAAGCTGGTTGGC+AGG | - | chr2_4:47167118-47167137 | Msa0331430:CDS | 50.0% |
| TGAATGGGTAGACGACGTGC+AGG | - | chr2_4:47165892-47165911 | Msa0331430:intron | 55.0% | |
| CAATTTGTGGGCCCCACATG+TGG | - | chr2_4:47167037-47167056 | Msa0331430:CDS | 55.0% | |
| TGAATGGGTAGACGACGTGC+AGG | - | chr2_4:47165892-47165911 | Msa0331430:intron | 55.0% | |
| CAATTTGTGGGCCCCACATG+TGG | - | chr2_4:47167037-47167056 | Msa0331430:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47165244 | 47167148 | 47165244 | ID=Msa0331430;Name=Msa0331430 |
| chr2_4 | mRNA | 47165244 | 47167148 | 47165244 | ID=Msa0331430-mRNA-1;Parent=Msa0331430;Name=Msa0331430-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.5|1|1|2|0|103 |
| chr2_4 | exon | 47167002 | 47167148 | 47167002 | ID=Msa0331430-mRNA-1:exon:14255;Parent=Msa0331430-mRNA-1 |
| chr2_4 | exon | 47165244 | 47165408 | 47165244 | ID=Msa0331430-mRNA-1:exon:14254;Parent=Msa0331430-mRNA-1 |
| chr2_4 | CDS | 47167002 | 47167148 | 47167002 | ID=Msa0331430-mRNA-1:cds;Parent=Msa0331430-mRNA-1 |
| chr2_4 | CDS | 47165244 | 47165408 | 47165244 | ID=Msa0331430-mRNA-1:cds;Parent=Msa0331430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
