Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510370 | XP_024634086.1 | 88.525 | 305 | 32 | 3 | 1 | 303 | 1 | 304 | 0.0 | 543 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510370 | sp|Q2PS26|ULP1D_ARATH | 34.932 | 146 | 79 | 4 | 156 | 290 | 417 | 557 | 6.28e-15 | 78.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510370 | A0A072V0T5 | 89.098 | 266 | 26 | 3 | 40 | 303 | 20 | 284 | 3.04e-169 | 480 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0166050 | Msa0510370 | 0.804881 | 1.745812e-49 | -8.615850e-47 |
Msa0425010 | Msa0510370 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
Msa0358330 | Msa0510370 | 0.973837 | 4.131188e-137 | -8.615850e-47 |
Msa0510370 | Msa0533070 | 0.806697 | 7.252100e-50 | -8.615850e-47 |
Msa0510370 | Msa0845400 | 0.800277 | 1.554507e-48 | -8.615850e-47 |
Msa0510370 | Msa1040120 | 0.808765 | 2.636616e-50 | -8.615850e-47 |
Msa0510370 | Msa1069310 | 0.804139 | 2.492797e-49 | -8.615850e-47 |
Msa0510370 | Msa1098560 | 0.811589 | 6.490243e-51 | -8.615850e-47 |
Msa0510370 | Msa1122660 | 0.800182 | 1.625069e-48 | -8.615850e-47 |
Msa0510370 | Msa1128160 | 0.834917 | 2.271624e-56 | -8.615850e-47 |
Msa0510370 | Msa1157170 | 0.803877 | 2.825894e-49 | -8.615850e-47 |
Msa0510370 | Msa1165360 | 0.831253 | 1.853751e-55 | -8.615850e-47 |
Msa0510370 | Msa1222970 | 0.805538 | 1.272128e-49 | -8.615850e-47 |
Msa0510370 | Msa1242230 | 0.823781 | 1.151088e-53 | -8.615850e-47 |
Msa0510370 | Msa1242240 | 0.805373 | 1.377268e-49 | -8.615850e-47 |
Msa0510370 | Msa1271280 | 0.851476 | 8.655908e-61 | -8.615850e-47 |
Msa0510370 | Msa1271300 | 0.816348 | 5.792362e-52 | -8.615850e-47 |
Msa0510370 | Msa1283840 | 0.821998 | 2.997017e-53 | -8.615850e-47 |
Msa0510370 | Msa1284260 | 0.804824 | 1.794289e-49 | -8.615850e-47 |
Msa0510370 | Msa1322860 | 0.815369 | 9.575075e-52 | -8.615850e-47 |
Msa0510370 | Msa1327050 | 0.808188 | 3.502004e-50 | -8.615850e-47 |
Msa0510370 | Msa1350840 | 0.805016 | 1.636131e-49 | -8.615850e-47 |
Msa0510370 | Msa1378760 | 0.805816 | 1.112222e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510370 | MtrunA17_Chr3g0116361 | 89.098 | 266 | 26 | 3 | 40 | 303 | 20 | 284 | 5.85e-173 | 480 |
Msa0510370 | MtrunA17_Chr3g0132991 | 28.655 | 171 | 111 | 3 | 131 | 290 | 444 | 614 | 8.40e-16 | 77.8 |
Msa0510370 | MtrunA17_Chr2g0279601 | 28.289 | 152 | 94 | 4 | 152 | 290 | 467 | 616 | 7.17e-14 | 72.0 |
Msa0510370 | MtrunA17_Chr8g0365341 | 32.450 | 151 | 87 | 3 | 156 | 294 | 382 | 529 | 1.04e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0510370 | AT3G48480.1 | 48.536 | 239 | 117 | 3 | 66 | 302 | 57 | 291 | 6.37e-78 | 239 |
Msa0510370 | AT1G60220.1 | 34.932 | 146 | 79 | 4 | 156 | 290 | 417 | 557 | 6.38e-16 | 78.6 |
Msa0510370 | AT1G09730.2 | 29.605 | 152 | 92 | 4 | 152 | 290 | 464 | 613 | 4.10e-15 | 76.3 |
Msa0510370 | AT1G09730.1 | 29.605 | 152 | 92 | 4 | 152 | 290 | 496 | 645 | 4.29e-15 | 76.3 |
Msa0510370 | AT4G33620.1 | 28.235 | 170 | 110 | 5 | 131 | 290 | 354 | 521 | 7.79e-14 | 72.4 |
Msa0510370 | AT1G10570.2 | 31.210 | 157 | 93 | 6 | 148 | 294 | 396 | 547 | 3.28e-13 | 70.5 |
Msa0510370 | AT1G10570.1 | 31.210 | 157 | 93 | 6 | 148 | 294 | 397 | 548 | 3.31e-13 | 70.5 |
Msa0510370 | AT1G10570.3 | 31.210 | 157 | 93 | 6 | 148 | 294 | 266 | 417 | 4.41e-13 | 69.7 |
Find 70 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTATGTAATTCAACTTTA+TGG | 0.101287 | 3_4:+59420587 | Msa0510370:three_prime_UTR |
CTTCTGATCTTCTGCCATTT+TGG | 0.150947 | 3_4:+59419820 | Msa0510370:CDS |
GCTTATGGTTTAGCCTTTAC+AGG | 0.253899 | 3_4:+59419577 | Msa0510370:CDS |
TTGCATACATGGACAGCTTA+TGG | 0.286157 | 3_4:+59419562 | Msa0510370:CDS |
ATCAGTGGACTTAAGGAATA+AGG | 0.299254 | 3_4:+59418457 | Msa0510370:intron |
TTCTACTTGACGAAATTCTA+TGG | 0.300173 | 3_4:-59417514 | None:intergenic |
CTGATGAGCATCAGCGATAT+TGG | 0.304272 | 3_4:-59419228 | None:intergenic |
ATTTATCTGACAGGAAAGTA+TGG | 0.307770 | 3_4:+59419508 | Msa0510370:intron |
TGTTCCTATCAGTGGACTTA+AGG | 0.326413 | 3_4:+59418450 | Msa0510370:intron |
TTGACGGGAATAAACATTCT+TGG | 0.328139 | 3_4:-59418507 | None:intergenic |
ACAAGAGAGGTGATAGAAAT+TGG | 0.332426 | 3_4:+59418551 | Msa0510370:CDS |
AGTATGTAATTCAACTTTAT+GGG | 0.334575 | 3_4:+59420588 | Msa0510370:three_prime_UTR |
GGGGAATTTGTTCATATAGA+AGG | 0.345486 | 3_4:+59420517 | Msa0510370:three_prime_UTR |
CAAAGTTCTCGCTAGATCTA+AGG | 0.347758 | 3_4:+59419358 | Msa0510370:CDS |
ATCACGTTGTATGTTGTTGC+TGG | 0.352342 | 3_4:+59419867 | Msa0510370:CDS |
GACGAAATTCTATGGTGTTT+CGG | 0.354157 | 3_4:-59417506 | None:intergenic |
CTGGTTTACCTTCGAAGATC+TGG | 0.357406 | 3_4:+59420408 | Msa0510370:CDS |
TACAAGACATTTATAAAGTC+GGG | 0.360064 | 3_4:+59420041 | Msa0510370:CDS |
AAGAGAAAACTTACAAAGTA+AGG | 0.378887 | 3_4:-59420302 | None:intergenic |
GAAATGAGAAACAAATTGAT+TGG | 0.386737 | 3_4:+59417454 | Msa0510370:five_prime_UTR |
AATCACCAGTGAAGTATGTT+GGG | 0.390373 | 3_4:-59420470 | None:intergenic |
TGACGGGAATAAACATTCTT+GGG | 0.395036 | 3_4:-59418506 | None:intergenic |
GAGAACTTGCAATCCGCTAC+TGG | 0.418161 | 3_4:+59419844 | Msa0510370:CDS |
AAAGCACACTTTCTTATGTC+TGG | 0.419143 | 3_4:-59419928 | None:intergenic |
GAGAATTTGGTTCCTTGAAC+TGG | 0.423213 | 3_4:+59420442 | Msa0510370:exon |
TCTGGTTCAAGCTGCTGCCT+TGG | 0.425200 | 3_4:-59419910 | None:intergenic |
GCTTTACTTGAGCGGCCAAT+TGG | 0.432833 | 3_4:-59417552 | None:intergenic |
ATCCACCGCGATTCTCCAAT+TGG | 0.438582 | 3_4:+59417537 | Msa0510370:five_prime_UTR |
CTTGGGCACAAATCCTGAGC+TGG | 0.440090 | 3_4:-59418489 | None:intergenic |
CGTGTTTACCATACGACTAT+AGG | 0.441885 | 3_4:-59419675 | None:intergenic |
ATTGCAAGTTCTCACCAAAA+TGG | 0.442196 | 3_4:-59419834 | None:intergenic |
GATAGCTGTACTCACTCTTC+AGG | 0.446649 | 3_4:-59420562 | None:intergenic |
ACTCTTCAGGACAAATCAAC+TGG | 0.455255 | 3_4:-59420549 | None:intergenic |
CCCTCCATGCTAAAATTCTC+AGG | 0.460075 | 3_4:-59420275 | None:intergenic |
ATCAATTTCAGCCGCTCTAA+CGG | 0.479334 | 3_4:-59420615 | None:intergenic |
ATTACCTTGGGCACTAAAAG+TGG | 0.479736 | 3_4:-59420100 | None:intergenic |
GTGATAGAAATTGGCCCTAA+AGG | 0.480923 | 3_4:+59418560 | Msa0510370:CDS |
AAAACAATTTAATGAAATAG+AGG | 0.483376 | 3_4:-59420241 | None:intergenic |
GAAGAGGTCGTTTGCATACA+TGG | 0.484637 | 3_4:+59419551 | Msa0510370:CDS |
GATATAAGATCCTTGGTCTC+TGG | 0.486771 | 3_4:-59420070 | None:intergenic |
TGTACGAAGCATTCCTGTAA+AGG | 0.487467 | 3_4:-59419590 | None:intergenic |
TAATCACCAGTGAAGTATGT+TGG | 0.496966 | 3_4:-59420471 | None:intergenic |
GTACAAGACATTTATAAAGT+CGG | 0.498215 | 3_4:+59420040 | Msa0510370:CDS |
TTCAAGCTGCTGCCTTGGAT+CGG | 0.507471 | 3_4:-59419905 | None:intergenic |
AATTTCTATCACCTCTCTTG+TGG | 0.515815 | 3_4:-59418549 | None:intergenic |
TGTTGGGGATATCCAGTTCA+AGG | 0.533735 | 3_4:-59420454 | None:intergenic |
TTACCTTCGAAGATCTGGAT+AGG | 0.538067 | 3_4:+59420413 | Msa0510370:CDS |
ACAGAGATAAGGTGCTGAGT+TGG | 0.540557 | 3_4:+59419610 | Msa0510370:CDS |
AATTCGAGATATAAGATCCT+TGG | 0.548234 | 3_4:-59420077 | None:intergenic |
ATATCCCCAACATACTTCAC+TGG | 0.549910 | 3_4:+59420465 | Msa0510370:three_prime_UTR |
GAATGCTTCGTACAGAGATA+AGG | 0.559251 | 3_4:+59419599 | Msa0510370:CDS |
TTTATCTGACAGGAAAGTAT+GGG | 0.570923 | 3_4:+59419509 | Msa0510370:intron |
AAAATCAAGAGAACATTCAA+AGG | 0.578542 | 3_4:+59419332 | Msa0510370:CDS |
TGAGAATCGCTTTACTTGAG+CGG | 0.591583 | 3_4:-59417560 | None:intergenic |
AAACCTATCCAGATCTTCGA+AGG | 0.596730 | 3_4:-59420416 | None:intergenic |
CAAAATGGCAGAAGATCAGA+AGG | 0.598520 | 3_4:-59419819 | None:intergenic |
CTCTTGAAATGACCGATCCA+AGG | 0.601300 | 3_4:+59419893 | Msa0510370:CDS |
AGAGAAAACTTACAAAGTAA+GGG | 0.608059 | 3_4:-59420301 | None:intergenic |
GAAAATCGAGACCACAAGAG+AGG | 0.609773 | 3_4:+59418538 | Msa0510370:CDS |
ACAAGACATTTATAAAGTCG+GGG | 0.610983 | 3_4:+59420042 | Msa0510370:CDS |
TTATGGGAATTCCGTTAGAG+CGG | 0.613562 | 3_4:+59420604 | Msa0510370:three_prime_UTR |
ACCAAGACTGTAAAAGTGAG+AGG | 0.627754 | 3_4:+59419260 | Msa0510370:CDS |
GAGAAACAAATTGATTGGAG+TGG | 0.629238 | 3_4:+59417459 | Msa0510370:five_prime_UTR |
ATCACCAGTGAAGTATGTTG+GGG | 0.633381 | 3_4:-59420469 | None:intergenic |
GGAGAAATTGACTCAAGACA+TGG | 0.634059 | 3_4:+59419203 | Msa0510370:CDS |
CAGAAGAGCACTGAACTCAA+CGG | 0.657975 | 3_4:+59417482 | Msa0510370:five_prime_UTR |
CAAGACATTTATAAAGTCGG+GGG | 0.675790 | 3_4:+59420043 | Msa0510370:CDS |
AGCGGCCAATTGGAGAATCG+CGG | 0.677805 | 3_4:-59417542 | None:intergenic |
GGCCAATTGGAGAATCGCGG+TGG | 0.690349 | 3_4:-59417539 | None:intergenic |
CATACAACGTGATCCAGTAG+CGG | 0.720222 | 3_4:-59419857 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAAAAATTAAGGTA+CGG | - | chr3_4:59418320-59418339 | None:intergenic | 10.0% |
!!! | CATCAAATTTTAAAAAATTA+AGG | - | chr3_4:59418325-59418344 | None:intergenic | 10.0% |
!! | AAAAATAGTTATAAGATTAT+AGG | + | chr3_4:59418934-59418953 | Msa0510370:intron | 10.0% |
!! | TTGAATAATTAATCAAAAAA+GGG | - | chr3_4:59419708-59419727 | None:intergenic | 10.0% |
!! | ATTGAATAATTAATCAAAAA+AGG | - | chr3_4:59419709-59419728 | None:intergenic | 10.0% |
!!! | TAATTAATAATTTTCAAGAA+TGG | - | chr3_4:59420331-59420350 | None:intergenic | 10.0% |
!!! | ATTATTTTATTTTACATACA+TGG | + | chr3_4:59420490-59420509 | Msa0510370:three_prime_UTR | 10.0% |
!!! | TCTATTTTTATTTTTTAACT+CGG | + | chr3_4:59420681-59420700 | Msa0510370:three_prime_UTR | 10.0% |
!! | TATTGAAAAAAAAGTGAAAT+AGG | + | chr3_4:59417425-59417444 | Msa0510370:five_prime_UTR | 15.0% |
!! | GAATATGAAGTAAAATTTAA+AGG | - | chr3_4:59417602-59417621 | None:intergenic | 15.0% |
!!! | TTGTAAGTTTTTTTTTTGTT+TGG | + | chr3_4:59418054-59418073 | Msa0510370:intron | 15.0% |
!!! | AACAACAATTTTTGAATTTA+CGG | - | chr3_4:59418089-59418108 | None:intergenic | 15.0% |
!!! | ATTTTAAAAAATTAAGGTAC+GGG | - | chr3_4:59418319-59418338 | None:intergenic | 15.0% |
!! | AAAAAAAAAACTAACCTTTA+GGG | - | chr3_4:59418577-59418596 | None:intergenic | 15.0% |
!! | AAAAAAAAAAACTAACCTTT+AGG | - | chr3_4:59418578-59418597 | None:intergenic | 15.0% |
!!! | TAAAAAAAACATTTTCACAA+AGG | + | chr3_4:59419638-59419657 | Msa0510370:CDS | 15.0% |
!! | TTGACATTTAACAAATAAAA+TGG | - | chr3_4:59419750-59419769 | None:intergenic | 15.0% |
!!! | TTTGAAATCATAATTTTGTA+GGG | + | chr3_4:59419786-59419805 | Msa0510370:intron | 15.0% |
!! | AAAACAATTTAATGAAATAG+AGG | - | chr3_4:59420244-59420263 | None:intergenic | 15.0% |
!!! | CTATTTCATTAAATTGTTTT+TGG | + | chr3_4:59420244-59420263 | Msa0510370:CDS | 15.0% |
!!! | TTGCTTTTTGTGTAATTTAT+AGG | + | chr3_4:59417717-59417736 | Msa0510370:intron | 20.0% |
!!! | TGCTTTTTGTGTAATTTATA+GGG | + | chr3_4:59417718-59417737 | Msa0510370:intron | 20.0% |
!!! | TTTTTTTTTCATTATTTGGG+TGG | + | chr3_4:59417774-59417793 | Msa0510370:intron | 20.0% |
!!! | TTTTTTTTCATTATTTGGGT+GGG | + | chr3_4:59417775-59417794 | Msa0510370:intron | 20.0% |
!!! | AACTATGTTTTTTTTTGTTG+TGG | + | chr3_4:59417907-59417926 | Msa0510370:intron | 20.0% |
!!! | ATAACAATGTTTCTAAATGT+GGG | - | chr3_4:59417968-59417987 | None:intergenic | 20.0% |
!!! | TATAACAATGTTTCTAAATG+TGG | - | chr3_4:59417969-59417988 | None:intergenic | 20.0% |
!! | CATTTAGAAACATTGTTATA+AGG | + | chr3_4:59417969-59417988 | Msa0510370:intron | 20.0% |
!! | AAACATTGTTATAAGGTTAT+AGG | + | chr3_4:59417976-59417995 | Msa0510370:intron | 20.0% |
!!! | ACAACAATTTTTGAATTTAC+GGG | - | chr3_4:59418088-59418107 | None:intergenic | 20.0% |
!!! | TAATGTTTTTACAACAACAA+TGG | + | chr3_4:59418245-59418264 | Msa0510370:intron | 20.0% |
!! | TTGTGTAAAGATTCTATATA+AGG | - | chr3_4:59418725-59418744 | None:intergenic | 20.0% |
!! | ATAAATTGCAGATATAAATG+CGG | - | chr3_4:59418795-59418814 | None:intergenic | 20.0% |
!! | TCCCAATTAAAATAAGTTTA+CGG | + | chr3_4:59418898-59418917 | Msa0510370:intron | 20.0% |
!!! | ACCGTAAACTTATTTTAATT+GGG | - | chr3_4:59418902-59418921 | None:intergenic | 20.0% |
!!! | AACCGTAAACTTATTTTAAT+TGG | - | chr3_4:59418903-59418922 | None:intergenic | 20.0% |
!!! | TTATAACTATTTTTTGCAAG+TGG | - | chr3_4:59418928-59418947 | None:intergenic | 20.0% |
!!! | TTTTTACATTTAGTATTCCT+CGG | + | chr3_4:59419297-59419316 | Msa0510370:CDS | 20.0% |
!!! | ATAAATGTTATTTATCTGAC+AGG | + | chr3_4:59419499-59419518 | Msa0510370:intron | 20.0% |
!! | CTACAAAATTATGATTTCAA+AGG | - | chr3_4:59419787-59419806 | None:intergenic | 20.0% |
!!! | CTTTGAAATCATAATTTTGT+AGG | + | chr3_4:59419785-59419804 | Msa0510370:intron | 20.0% |
!!! | TTGAAATCATAATTTTGTAG+GGG | + | chr3_4:59419787-59419806 | Msa0510370:intron | 20.0% |
!!! | TTTATTTTACATACATGGTA+AGG | + | chr3_4:59420495-59420514 | Msa0510370:three_prime_UTR | 20.0% |
!!! | TTATTTTACATACATGGTAA+GGG | + | chr3_4:59420496-59420515 | Msa0510370:three_prime_UTR | 20.0% |
!! | AAGTATGTAATTCAACTTTA+TGG | + | chr3_4:59420587-59420606 | Msa0510370:three_prime_UTR | 20.0% |
!! | AGTATGTAATTCAACTTTAT+GGG | + | chr3_4:59420588-59420607 | Msa0510370:three_prime_UTR | 20.0% |
! | GAAATGAGAAACAAATTGAT+TGG | + | chr3_4:59417454-59417473 | Msa0510370:five_prime_UTR | 25.0% |
! | GAAGTAAAATTTAAAGGTGA+AGG | - | chr3_4:59417596-59417615 | None:intergenic | 25.0% |
!!! | TTTTTTTCATTATTTGGGTG+GGG | + | chr3_4:59417776-59417795 | Msa0510370:intron | 25.0% |
!!! | TTTCTTTCACATTGATTTTG+AGG | + | chr3_4:59417809-59417828 | Msa0510370:intron | 25.0% |
! | AAAAACATAGTTTCTGAATG+TGG | - | chr3_4:59417899-59417918 | None:intergenic | 25.0% |
! | TATAAGGTTATAGGTGTTTA+CGG | + | chr3_4:59417985-59418004 | Msa0510370:intron | 25.0% |
!! | CAACAATTTTTGAATTTACG+GGG | - | chr3_4:59418087-59418106 | None:intergenic | 25.0% |
! | CAAAAAACACTATAATTGCA+GGG | + | chr3_4:59418203-59418222 | Msa0510370:intron | 25.0% |
! | AAATTTGATGTATTTCGTAC+TGG | + | chr3_4:59418335-59418354 | Msa0510370:intron | 25.0% |
! | AATTTGATGTATTTCGTACT+GGG | + | chr3_4:59418336-59418355 | Msa0510370:intron | 25.0% |
!! | TATTTTCACACAAACAACAA+TGG | - | chr3_4:59418659-59418678 | None:intergenic | 25.0% |
! | TAAATTGCAGATATAAATGC+GGG | - | chr3_4:59418794-59418813 | None:intergenic | 25.0% |
!!! | TTTGTGTTTGCTATTAACAT+AGG | + | chr3_4:59418870-59418889 | Msa0510370:intron | 25.0% |
!!! | TTGTGTTTGCTATTAACATA+GGG | + | chr3_4:59418871-59418890 | Msa0510370:intron | 25.0% |
! | TTTGAGAAGTTCAATAAATC+TGG | + | chr3_4:59419098-59419117 | Msa0510370:intron | 25.0% |
! | ATCTGGATATTGATATCTAT+TGG | + | chr3_4:59419115-59419134 | Msa0510370:intron | 25.0% |
! | TCTGGATATTGATATCTATT+GGG | + | chr3_4:59419116-59419135 | Msa0510370:intron | 25.0% |
! | AAAATCAAGAGAACATTCAA+AGG | + | chr3_4:59419332-59419351 | Msa0510370:CDS | 25.0% |
!! | TCAATGATTTTTGATGGAAA+AGG | + | chr3_4:59419443-59419462 | Msa0510370:intron | 25.0% |
!!! | AAATGGCTCTTGTTATTAAA+GGG | - | chr3_4:59419733-59419752 | None:intergenic | 25.0% |
!!! | AAAATGGCTCTTGTTATTAA+AGG | - | chr3_4:59419734-59419753 | None:intergenic | 25.0% |
!! | ATTTGTTAAATGTCAATCCA+CGG | + | chr3_4:59419754-59419773 | Msa0510370:intron | 25.0% |
!! | TGAAATCATAATTTTGTAGG+GGG | + | chr3_4:59419788-59419807 | Msa0510370:intron | 25.0% |
! | GTACAAGACATTTATAAAGT+CGG | + | chr3_4:59420040-59420059 | Msa0510370:CDS | 25.0% |
! | TACAAGACATTTATAAAGTC+GGG | + | chr3_4:59420041-59420060 | Msa0510370:CDS | 25.0% |
! | TGGACATGAAAATTGTAAAA+GGG | - | chr3_4:59420132-59420151 | None:intergenic | 25.0% |
! | TTGGACATGAAAATTGTAAA+AGG | - | chr3_4:59420133-59420152 | None:intergenic | 25.0% |
!!! | ATTGGTTTTCTTTTAACCAT+TGG | - | chr3_4:59420169-59420188 | None:intergenic | 25.0% |
! | AGAGAAAACTTACAAAGTAA+GGG | - | chr3_4:59420304-59420323 | None:intergenic | 25.0% |
! | AAGAGAAAACTTACAAAGTA+AGG | - | chr3_4:59420305-59420324 | None:intergenic | 25.0% |
!!! | GATTTAATTTTGTTTGCCAT+TGG | + | chr3_4:59420364-59420383 | Msa0510370:intron | 25.0% |
!! | TATTTTACATACATGGTAAG+GGG | + | chr3_4:59420497-59420516 | Msa0510370:three_prime_UTR | 25.0% |
TTCTACTTGACGAAATTCTA+TGG | - | chr3_4:59417517-59417536 | None:intergenic | 30.0% | |
!!! | TTTTTTCATTATTTGGGTGG+GGG | + | chr3_4:59417777-59417796 | Msa0510370:intron | 30.0% |
!!! | ATTTTGAGGTACTACTGTTA+GGG | + | chr3_4:59417823-59417842 | Msa0510370:intron | 30.0% |
TACAAATGCTATAATTGCAG+AGG | - | chr3_4:59418039-59418058 | None:intergenic | 30.0% | |
ATCTAAACAGAAAATCTTGC+AGG | + | chr3_4:59418171-59418190 | Msa0510370:intron | 30.0% | |
TCTAAACAGAAAATCTTGCA+GGG | + | chr3_4:59418172-59418191 | Msa0510370:intron | 30.0% | |
!!! | CCTGCAATTATAGTGTTTTT+TGG | - | chr3_4:59418205-59418224 | None:intergenic | 30.0% |
CCAAAAAACACTATAATTGC+AGG | + | chr3_4:59418202-59418221 | Msa0510370:intron | 30.0% | |
AACAATGGTAGTAATTCACT+TGG | + | chr3_4:59418260-59418279 | Msa0510370:intron | 30.0% | |
ACTTATGAGCAATGATTCAT+AGG | - | chr3_4:59418374-59418393 | None:intergenic | 30.0% | |
! | ATTGAGAAGCTATTTCAAAC+TGG | + | chr3_4:59418398-59418417 | Msa0510370:intron | 30.0% |
! | GATTTTCTTCTTTCTTTGAC+GGG | - | chr3_4:59418525-59418544 | None:intergenic | 30.0% |
! | CGATTTTCTTCTTTCTTTGA+CGG | - | chr3_4:59418526-59418545 | None:intergenic | 30.0% |
GCCTTCGTTTATTCAATTTA+CGG | + | chr3_4:59418627-59418646 | Msa0510370:intron | 30.0% | |
CCTTCGTTTATTCAATTTAC+GGG | + | chr3_4:59418628-59418647 | Msa0510370:intron | 30.0% | |
CTATATAAGGCACAAAAAGT+AGG | - | chr3_4:59418712-59418731 | None:intergenic | 30.0% | |
AAATTGCAGATATAAATGCG+GGG | - | chr3_4:59418793-59418812 | None:intergenic | 30.0% | |
ATTGCGTCTATAAACATCAT+AGG | + | chr3_4:59418828-59418847 | Msa0510370:intron | 30.0% | |
ACATAATCAACTTCTCTGAT+TGG | - | chr3_4:59419144-59419163 | None:intergenic | 30.0% | |
! | CACAGTTCAATGATTTTTGA+TGG | + | chr3_4:59419437-59419456 | Msa0510370:intron | 30.0% |
ATTTATCTGACAGGAAAGTA+TGG | + | chr3_4:59419508-59419527 | Msa0510370:intron | 30.0% | |
! | TTTATCTGACAGGAAAGTAT+GGG | + | chr3_4:59419509-59419528 | Msa0510370:intron | 30.0% |
! | TTTTTGTTCCTATAGTCGTA+TGG | + | chr3_4:59419667-59419686 | Msa0510370:CDS | 30.0% |
AAATTGCAAATACTCTGACA+GGG | - | chr3_4:59419992-59420011 | None:intergenic | 30.0% | |
TAAATTGCAAATACTCTGAC+AGG | - | chr3_4:59419993-59420012 | None:intergenic | 30.0% | |
CTGAAAATGAAGATAAAAGC+TGG | - | chr3_4:59420016-59420035 | None:intergenic | 30.0% | |
ACAAGACATTTATAAAGTCG+GGG | + | chr3_4:59420042-59420061 | Msa0510370:CDS | 30.0% | |
AATTCGAGATATAAGATCCT+TGG | - | chr3_4:59420080-59420099 | None:intergenic | 30.0% | |
GGACATGAAAATTGTAAAAG+GGG | - | chr3_4:59420131-59420150 | None:intergenic | 30.0% | |
! | CATTGGTGATTTGATTACAT+TGG | - | chr3_4:59420152-59420171 | None:intergenic | 30.0% |
CAATGTAATCAAATCACCAA+TGG | + | chr3_4:59420150-59420169 | Msa0510370:intron | 30.0% | |
AGAAAACCAATCTATATTGC+AGG | + | chr3_4:59420178-59420197 | Msa0510370:intron | 30.0% | |
!! | AATTTTGTTTGCCATTGGTA+TGG | + | chr3_4:59420369-59420388 | Msa0510370:intron | 30.0% |
! | ATTTTACATACATGGTAAGG+GGG | + | chr3_4:59420498-59420517 | Msa0510370:three_prime_UTR | 30.0% |
GAGAAACAAATTGATTGGAG+TGG | + | chr3_4:59417459-59417478 | Msa0510370:five_prime_UTR | 35.0% | |
GACGAAATTCTATGGTGTTT+CGG | - | chr3_4:59417509-59417528 | None:intergenic | 35.0% | |
TTGCGTAAACATGAGATTGA+AGG | - | chr3_4:59417689-59417708 | None:intergenic | 35.0% | |
!!! | GATTTTGAGGTACTACTGTT+AGG | + | chr3_4:59417822-59417841 | Msa0510370:intron | 35.0% |
! | CATGATTTTTGCGATTTAGG+TGG | + | chr3_4:59417846-59417865 | Msa0510370:intron | 35.0% |
ACATAGTTTCTGAATGTGGA+AGG | - | chr3_4:59417895-59417914 | None:intergenic | 35.0% | |
GGTGTTTACGGAAAGTTAAA+AGG | + | chr3_4:59417997-59418016 | Msa0510370:intron | 35.0% | |
CTAAACAGAAAATCTTGCAG+GGG | + | chr3_4:59418173-59418192 | Msa0510370:intron | 35.0% | |
AATGATTCATAGGTACGTGT+AGG | - | chr3_4:59418364-59418383 | None:intergenic | 35.0% | |
TATTCCTTAAGTCCACTGAT+AGG | - | chr3_4:59418457-59418476 | None:intergenic | 35.0% | |
! | ATCAGTGGACTTAAGGAATA+AGG | + | chr3_4:59418457-59418476 | Msa0510370:intron | 35.0% |
TGACGGGAATAAACATTCTT+GGG | - | chr3_4:59418509-59418528 | None:intergenic | 35.0% | |
TTGACGGGAATAAACATTCT+TGG | - | chr3_4:59418510-59418529 | None:intergenic | 35.0% | |
AATTTCTATCACCTCTCTTG+TGG | - | chr3_4:59418552-59418571 | None:intergenic | 35.0% | |
ACAAGAGAGGTGATAGAAAT+TGG | + | chr3_4:59418551-59418570 | Msa0510370:CDS | 35.0% | |
CCCGTAAATTGAATAAACGA+AGG | - | chr3_4:59418631-59418650 | None:intergenic | 35.0% | |
AACTTCTCAAAAAACACTCG+TGG | - | chr3_4:59419089-59419108 | None:intergenic | 35.0% | |
! | GTTCTCTTGATTTTTGTTCG+TGG | - | chr3_4:59419326-59419345 | None:intergenic | 35.0% |
!! | GTTTTTCAGAAGATAGGAAG+AGG | + | chr3_4:59419535-59419554 | Msa0510370:CDS | 35.0% |
ATTTCAAAGGATAAACTCCG+TGG | - | chr3_4:59419774-59419793 | None:intergenic | 35.0% | |
ATTGCAAGTTCTCACCAAAA+TGG | - | chr3_4:59419837-59419856 | None:intergenic | 35.0% | |
AAAGCACACTTTCTTATGTC+TGG | - | chr3_4:59419931-59419950 | None:intergenic | 35.0% | |
CAAGACATTTATAAAGTCGG+GGG | + | chr3_4:59420043-59420062 | Msa0510370:CDS | 35.0% | |
! | AAAAAGACGACACTGATTGT+GGG | + | chr3_4:59420210-59420229 | Msa0510370:CDS | 35.0% |
!! | GGATAGGTTTTGTGAGAATT+TGG | + | chr3_4:59420429-59420448 | Msa0510370:CDS | 35.0% |
AATCACCAGTGAAGTATGTT+GGG | - | chr3_4:59420473-59420492 | None:intergenic | 35.0% | |
TAATCACCAGTGAAGTATGT+TGG | - | chr3_4:59420474-59420493 | None:intergenic | 35.0% | |
! | GGGGAATTTGTTCATATAGA+AGG | + | chr3_4:59420517-59420536 | Msa0510370:three_prime_UTR | 35.0% |
TGAGAATCGCTTTACTTGAG+CGG | - | chr3_4:59417563-59417582 | None:intergenic | 40.0% | |
CATCATCACAGAAACAGCAA+TGG | - | chr3_4:59417624-59417643 | None:intergenic | 40.0% | |
! | GGGCATGATTTTTGCGATTT+AGG | + | chr3_4:59417843-59417862 | Msa0510370:intron | 40.0% |
TAGTTTCTGAATGTGGAAGG+TGG | - | chr3_4:59417892-59417911 | None:intergenic | 40.0% | |
GTCTCTATAAGCTGATGTCA+GGG | - | chr3_4:59418117-59418136 | None:intergenic | 40.0% | |
AGTCTCTATAAGCTGATGTC+AGG | - | chr3_4:59418118-59418137 | None:intergenic | 40.0% | |
! | TGTTCCTATCAGTGGACTTA+AGG | + | chr3_4:59418450-59418469 | Msa0510370:intron | 40.0% |
AAGGAAAGAAAAACCAGCTC+AGG | + | chr3_4:59418476-59418495 | Msa0510370:CDS | 40.0% | |
GTGATAGAAATTGGCCCTAA+AGG | + | chr3_4:59418560-59418579 | Msa0510370:CDS | 40.0% | |
! | GCAAGAGTGTATCATGTATG+AGG | - | chr3_4:59418609-59418628 | None:intergenic | 40.0% |
!! | ATCAGTCGATTTTGCGAATC+AGG | + | chr3_4:59419178-59419197 | Msa0510370:intron | 40.0% |
! | GGAGAAATTGACTCAAGACA+TGG | + | chr3_4:59419203-59419222 | Msa0510370:CDS | 40.0% |
ACCAAGACTGTAAAAGTGAG+AGG | + | chr3_4:59419260-59419279 | Msa0510370:CDS | 40.0% | |
!! | TCCTCTCACTTTTACAGTCT+TGG | - | chr3_4:59419264-59419283 | None:intergenic | 40.0% |
CAAAGTTCTCGCTAGATCTA+AGG | + | chr3_4:59419358-59419377 | Msa0510370:CDS | 40.0% | |
!! | GGGAGAGTTTTTCAGAAGAT+AGG | + | chr3_4:59419529-59419548 | Msa0510370:CDS | 40.0% |
TTGCATACATGGACAGCTTA+TGG | + | chr3_4:59419562-59419581 | Msa0510370:CDS | 40.0% | |
! | GCTTATGGTTTAGCCTTTAC+AGG | + | chr3_4:59419577-59419596 | Msa0510370:CDS | 40.0% |
! | TGTACGAAGCATTCCTGTAA+AGG | - | chr3_4:59419593-59419612 | None:intergenic | 40.0% |
GAATGCTTCGTACAGAGATA+AGG | + | chr3_4:59419599-59419618 | Msa0510370:CDS | 40.0% | |
CGTGTTTACCATACGACTAT+AGG | - | chr3_4:59419678-59419697 | None:intergenic | 40.0% | |
CAAAATGGCAGAAGATCAGA+AGG | - | chr3_4:59419822-59419841 | None:intergenic | 40.0% | |
!! | CTTCTGATCTTCTGCCATTT+TGG | + | chr3_4:59419820-59419839 | Msa0510370:CDS | 40.0% |
ATCACGTTGTATGTTGTTGC+TGG | + | chr3_4:59419867-59419886 | Msa0510370:CDS | 40.0% | |
GATATAAGATCCTTGGTCTC+TGG | - | chr3_4:59420073-59420092 | None:intergenic | 40.0% | |
!! | AATTCCACTTTTAGTGCCCA+AGG | + | chr3_4:59420096-59420115 | Msa0510370:CDS | 40.0% |
ATTACCTTGGGCACTAAAAG+TGG | - | chr3_4:59420103-59420122 | None:intergenic | 40.0% | |
AAAGGGGTCGTTATTACCTT+GGG | - | chr3_4:59420115-59420134 | None:intergenic | 40.0% | |
AAAAGGGGTCGTTATTACCT+TGG | - | chr3_4:59420116-59420135 | None:intergenic | 40.0% | |
! | TCAGTGTCGTCTTTTTGTTG+TGG | - | chr3_4:59420206-59420225 | None:intergenic | 40.0% |
! | CAAAAAGACGACACTGATTG+TGG | + | chr3_4:59420209-59420228 | Msa0510370:CDS | 40.0% |
!! | ACCTGAGAATTTTAGCATGG+AGG | + | chr3_4:59420274-59420293 | Msa0510370:CDS | 40.0% |
!! | CCTGAGAATTTTAGCATGGA+GGG | + | chr3_4:59420275-59420294 | Msa0510370:CDS | 40.0% |
!! | CTGAGAATTTTAGCATGGAG+GGG | + | chr3_4:59420276-59420295 | Msa0510370:CDS | 40.0% |
TTTCATCTGCACCATACCAA+TGG | - | chr3_4:59420383-59420402 | None:intergenic | 40.0% | |
TGGTGCAGATGAAAAAAGAC+TGG | + | chr3_4:59420389-59420408 | Msa0510370:intron | 40.0% | |
TTACCTTCGAAGATCTGGAT+AGG | + | chr3_4:59420413-59420432 | Msa0510370:CDS | 40.0% | |
AAACCTATCCAGATCTTCGA+AGG | - | chr3_4:59420419-59420438 | None:intergenic | 40.0% | |
! | GAGAATTTGGTTCCTTGAAC+TGG | + | chr3_4:59420442-59420461 | Msa0510370:exon | 40.0% |
ATATCCCCAACATACTTCAC+TGG | + | chr3_4:59420465-59420484 | Msa0510370:three_prime_UTR | 40.0% | |
ATCACCAGTGAAGTATGTTG+GGG | - | chr3_4:59420472-59420491 | None:intergenic | 40.0% | |
ACTCTTCAGGACAAATCAAC+TGG | - | chr3_4:59420552-59420571 | None:intergenic | 40.0% | |
TTATGGGAATTCCGTTAGAG+CGG | + | chr3_4:59420604-59420623 | Msa0510370:three_prime_UTR | 40.0% | |
ATCAATTTCAGCCGCTCTAA+CGG | - | chr3_4:59420618-59420637 | None:intergenic | 40.0% | |
!! | CAGAAGAGCACTGAACTCAA+CGG | + | chr3_4:59417482-59417501 | Msa0510370:five_prime_UTR | 45.0% |
TGTGGTATCGTTCCTACCAA+CGG | + | chr3_4:59417925-59417944 | Msa0510370:intron | 45.0% | |
CCACTGATAGGAACAATGAC+AGG | - | chr3_4:59418445-59418464 | None:intergenic | 45.0% | |
CCTGTCATTGTTCCTATCAG+TGG | + | chr3_4:59418442-59418461 | Msa0510370:intron | 45.0% | |
GAAAATCGAGACCACAAGAG+AGG | + | chr3_4:59418538-59418557 | Msa0510370:CDS | 45.0% | |
!! | GTCGATTTTGCGAATCAGGA+AGG | + | chr3_4:59419182-59419201 | Msa0510370:intron | 45.0% |
CTGATGAGCATCAGCGATAT+TGG | - | chr3_4:59419231-59419250 | None:intergenic | 45.0% | |
GAAGAGGTCGTTTGCATACA+TGG | + | chr3_4:59419551-59419570 | Msa0510370:CDS | 45.0% | |
!! | ACAGAGATAAGGTGCTGAGT+TGG | + | chr3_4:59419610-59419629 | Msa0510370:CDS | 45.0% |
!! | CATAATTTTGTAGGGGGCAC+TGG | + | chr3_4:59419794-59419813 | Msa0510370:intron | 45.0% |
CATACAACGTGATCCAGTAG+CGG | - | chr3_4:59419860-59419879 | None:intergenic | 45.0% | |
CTCTTGAAATGACCGATCCA+AGG | + | chr3_4:59419893-59419912 | Msa0510370:CDS | 45.0% | |
ACATTTATAAAGTCGGGGGC+AGG | + | chr3_4:59420047-59420066 | Msa0510370:CDS | 45.0% | |
GTGGCACCTGCAATATAGAT+TGG | - | chr3_4:59420187-59420206 | None:intergenic | 45.0% | |
!! | CGCACCTGAGAATTTTAGCA+TGG | + | chr3_4:59420271-59420290 | Msa0510370:CDS | 45.0% |
CCCTCCATGCTAAAATTCTC+AGG | - | chr3_4:59420278-59420297 | None:intergenic | 45.0% | |
CTGGTTTACCTTCGAAGATC+TGG | + | chr3_4:59420408-59420427 | Msa0510370:CDS | 45.0% | |
TGTTGGGGATATCCAGTTCA+AGG | - | chr3_4:59420457-59420476 | None:intergenic | 45.0% | |
GATAGCTGTACTCACTCTTC+AGG | - | chr3_4:59420565-59420584 | None:intergenic | 45.0% | |
!! | ATAATGAAAAAAAAAAAAAA+AGG | - | chr3_4:59417769-59417788 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTCATTATT+TGG | + | chr3_4:59417770-59417789 | Msa0510370:intron | 5.0% |
!!! | TTTTTTTTTTTTCATTATTT+GGG | + | chr3_4:59417771-59417790 | Msa0510370:intron | 5.0% |
ATCCACCGCGATTCTCCAAT+TGG | + | chr3_4:59417537-59417556 | Msa0510370:five_prime_UTR | 50.0% | |
GCTTTACTTGAGCGGCCAAT+TGG | - | chr3_4:59417555-59417574 | None:intergenic | 50.0% | |
! | ATTTTTGTTCGTGGTCGCCG+AGG | - | chr3_4:59419317-59419336 | None:intergenic | 50.0% |
GAGAACTTGCAATCCGCTAC+TGG | + | chr3_4:59419844-59419863 | Msa0510370:CDS | 50.0% | |
TTCAAGCTGCTGCCTTGGAT+CGG | - | chr3_4:59419908-59419927 | None:intergenic | 50.0% | |
AGCGGCCAATTGGAGAATCG+CGG | - | chr3_4:59417545-59417564 | None:intergenic | 55.0% | |
GTGAGCTTAGCTCCGTTGGT+AGG | - | chr3_4:59417940-59417959 | None:intergenic | 55.0% | |
CCTTGTGAGCTTAGCTCCGT+TGG | - | chr3_4:59417944-59417963 | None:intergenic | 55.0% | |
CCAACGGAGCTAAGCTCACA+AGG | + | chr3_4:59417941-59417960 | Msa0510370:intron | 55.0% | |
CTTGGGCACAAATCCTGAGC+TGG | - | chr3_4:59418492-59418511 | None:intergenic | 55.0% | |
! | TCTGGTTCAAGCTGCTGCCT+TGG | - | chr3_4:59419913-59419932 | None:intergenic | 55.0% |
GGCCAATTGGAGAATCGCGG+TGG | - | chr3_4:59417542-59417561 | None:intergenic | 60.0% | |
CGGGGGCAGGCCAGAGACCA+AGG | + | chr3_4:59420060-59420079 | Msa0510370:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 59417407 | 59420810 | 59417407 | ID=Msa0510370;Name=Msa0510370 |
chr3_4 | mRNA | 59417407 | 59420810 | 59417407 | ID=Msa0510370-mRNA-1;Parent=Msa0510370;Name=Msa0510370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=180|1|1|1|0.85|0.87|8|351|304 |
chr3_4 | exon | 59417407 | 59417587 | 59417407 | ID=Msa0510370-mRNA-1:exon:13929;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59418462 | 59418581 | 59418462 | ID=Msa0510370-mRNA-1:exon:13930;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59419183 | 59419417 | 59419183 | ID=Msa0510370-mRNA-1:exon:13931;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59419521 | 59419688 | 59419521 | ID=Msa0510370-mRNA-1:exon:13932;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59419807 | 59419941 | 59419807 | ID=Msa0510370-mRNA-1:exon:13933;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59420036 | 59420117 | 59420036 | ID=Msa0510370-mRNA-1:exon:13934;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59420200 | 59420310 | 59420200 | ID=Msa0510370-mRNA-1:exon:13935;Parent=Msa0510370-mRNA-1 |
chr3_4 | exon | 59420397 | 59420810 | 59420397 | ID=Msa0510370-mRNA-1:exon:13936;Parent=Msa0510370-mRNA-1 |
chr3_4 | five_prime_UTR | 59417407 | 59417586 | 59417407 | ID=Msa0510370-mRNA-1:five_prime_utr;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59417587 | 59417587 | 59417587 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59418462 | 59418581 | 59418462 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59419183 | 59419417 | 59419183 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59419521 | 59419688 | 59419521 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59419807 | 59419941 | 59419807 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59420036 | 59420117 | 59420036 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59420200 | 59420310 | 59420200 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | CDS | 59420397 | 59420459 | 59420397 | ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1 |
chr3_4 | three_prime_UTR | 59420460 | 59420810 | 59420460 | ID=Msa0510370-mRNA-1:three_prime_utr;Parent=Msa0510370-mRNA-1 |
Gene Sequence |
Protein sequence |