AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510370 MtrunA17_Chr3g0116361 89.098 266 26 3 40 303 20 284 5.85e-173 480
Msa0510370 MtrunA17_Chr3g0132991 28.655 171 111 3 131 290 444 614 8.40e-16 77.8
Msa0510370 MtrunA17_Chr2g0279601 28.289 152 94 4 152 290 467 616 7.17e-14 72.0
Msa0510370 MtrunA17_Chr8g0365341 32.450 151 87 3 156 294 382 529 1.04e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510370 AT3G48480.1 48.536 239 117 3 66 302 57 291 6.37e-78 239
Msa0510370 AT1G60220.1 34.932 146 79 4 156 290 417 557 6.38e-16 78.6
Msa0510370 AT1G09730.2 29.605 152 92 4 152 290 464 613 4.10e-15 76.3
Msa0510370 AT1G09730.1 29.605 152 92 4 152 290 496 645 4.29e-15 76.3
Msa0510370 AT4G33620.1 28.235 170 110 5 131 290 354 521 7.79e-14 72.4
Msa0510370 AT1G10570.2 31.210 157 93 6 148 294 396 547 3.28e-13 70.5
Msa0510370 AT1G10570.1 31.210 157 93 6 148 294 397 548 3.31e-13 70.5
Msa0510370 AT1G10570.3 31.210 157 93 6 148 294 266 417 4.41e-13 69.7

Find 70 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTATGTAATTCAACTTTA+TGG 0.101287 3_4:+59420587 Msa0510370:three_prime_UTR
CTTCTGATCTTCTGCCATTT+TGG 0.150947 3_4:+59419820 Msa0510370:CDS
GCTTATGGTTTAGCCTTTAC+AGG 0.253899 3_4:+59419577 Msa0510370:CDS
TTGCATACATGGACAGCTTA+TGG 0.286157 3_4:+59419562 Msa0510370:CDS
ATCAGTGGACTTAAGGAATA+AGG 0.299254 3_4:+59418457 Msa0510370:intron
TTCTACTTGACGAAATTCTA+TGG 0.300173 3_4:-59417514 None:intergenic
CTGATGAGCATCAGCGATAT+TGG 0.304272 3_4:-59419228 None:intergenic
ATTTATCTGACAGGAAAGTA+TGG 0.307770 3_4:+59419508 Msa0510370:intron
TGTTCCTATCAGTGGACTTA+AGG 0.326413 3_4:+59418450 Msa0510370:intron
TTGACGGGAATAAACATTCT+TGG 0.328139 3_4:-59418507 None:intergenic
ACAAGAGAGGTGATAGAAAT+TGG 0.332426 3_4:+59418551 Msa0510370:CDS
AGTATGTAATTCAACTTTAT+GGG 0.334575 3_4:+59420588 Msa0510370:three_prime_UTR
GGGGAATTTGTTCATATAGA+AGG 0.345486 3_4:+59420517 Msa0510370:three_prime_UTR
CAAAGTTCTCGCTAGATCTA+AGG 0.347758 3_4:+59419358 Msa0510370:CDS
ATCACGTTGTATGTTGTTGC+TGG 0.352342 3_4:+59419867 Msa0510370:CDS
GACGAAATTCTATGGTGTTT+CGG 0.354157 3_4:-59417506 None:intergenic
CTGGTTTACCTTCGAAGATC+TGG 0.357406 3_4:+59420408 Msa0510370:CDS
TACAAGACATTTATAAAGTC+GGG 0.360064 3_4:+59420041 Msa0510370:CDS
AAGAGAAAACTTACAAAGTA+AGG 0.378887 3_4:-59420302 None:intergenic
GAAATGAGAAACAAATTGAT+TGG 0.386737 3_4:+59417454 Msa0510370:five_prime_UTR
AATCACCAGTGAAGTATGTT+GGG 0.390373 3_4:-59420470 None:intergenic
TGACGGGAATAAACATTCTT+GGG 0.395036 3_4:-59418506 None:intergenic
GAGAACTTGCAATCCGCTAC+TGG 0.418161 3_4:+59419844 Msa0510370:CDS
AAAGCACACTTTCTTATGTC+TGG 0.419143 3_4:-59419928 None:intergenic
GAGAATTTGGTTCCTTGAAC+TGG 0.423213 3_4:+59420442 Msa0510370:exon
TCTGGTTCAAGCTGCTGCCT+TGG 0.425200 3_4:-59419910 None:intergenic
GCTTTACTTGAGCGGCCAAT+TGG 0.432833 3_4:-59417552 None:intergenic
ATCCACCGCGATTCTCCAAT+TGG 0.438582 3_4:+59417537 Msa0510370:five_prime_UTR
CTTGGGCACAAATCCTGAGC+TGG 0.440090 3_4:-59418489 None:intergenic
CGTGTTTACCATACGACTAT+AGG 0.441885 3_4:-59419675 None:intergenic
ATTGCAAGTTCTCACCAAAA+TGG 0.442196 3_4:-59419834 None:intergenic
GATAGCTGTACTCACTCTTC+AGG 0.446649 3_4:-59420562 None:intergenic
ACTCTTCAGGACAAATCAAC+TGG 0.455255 3_4:-59420549 None:intergenic
CCCTCCATGCTAAAATTCTC+AGG 0.460075 3_4:-59420275 None:intergenic
ATCAATTTCAGCCGCTCTAA+CGG 0.479334 3_4:-59420615 None:intergenic
ATTACCTTGGGCACTAAAAG+TGG 0.479736 3_4:-59420100 None:intergenic
GTGATAGAAATTGGCCCTAA+AGG 0.480923 3_4:+59418560 Msa0510370:CDS
AAAACAATTTAATGAAATAG+AGG 0.483376 3_4:-59420241 None:intergenic
GAAGAGGTCGTTTGCATACA+TGG 0.484637 3_4:+59419551 Msa0510370:CDS
GATATAAGATCCTTGGTCTC+TGG 0.486771 3_4:-59420070 None:intergenic
TGTACGAAGCATTCCTGTAA+AGG 0.487467 3_4:-59419590 None:intergenic
TAATCACCAGTGAAGTATGT+TGG 0.496966 3_4:-59420471 None:intergenic
GTACAAGACATTTATAAAGT+CGG 0.498215 3_4:+59420040 Msa0510370:CDS
TTCAAGCTGCTGCCTTGGAT+CGG 0.507471 3_4:-59419905 None:intergenic
AATTTCTATCACCTCTCTTG+TGG 0.515815 3_4:-59418549 None:intergenic
TGTTGGGGATATCCAGTTCA+AGG 0.533735 3_4:-59420454 None:intergenic
TTACCTTCGAAGATCTGGAT+AGG 0.538067 3_4:+59420413 Msa0510370:CDS
ACAGAGATAAGGTGCTGAGT+TGG 0.540557 3_4:+59419610 Msa0510370:CDS
AATTCGAGATATAAGATCCT+TGG 0.548234 3_4:-59420077 None:intergenic
ATATCCCCAACATACTTCAC+TGG 0.549910 3_4:+59420465 Msa0510370:three_prime_UTR
GAATGCTTCGTACAGAGATA+AGG 0.559251 3_4:+59419599 Msa0510370:CDS
TTTATCTGACAGGAAAGTAT+GGG 0.570923 3_4:+59419509 Msa0510370:intron
AAAATCAAGAGAACATTCAA+AGG 0.578542 3_4:+59419332 Msa0510370:CDS
TGAGAATCGCTTTACTTGAG+CGG 0.591583 3_4:-59417560 None:intergenic
AAACCTATCCAGATCTTCGA+AGG 0.596730 3_4:-59420416 None:intergenic
CAAAATGGCAGAAGATCAGA+AGG 0.598520 3_4:-59419819 None:intergenic
CTCTTGAAATGACCGATCCA+AGG 0.601300 3_4:+59419893 Msa0510370:CDS
AGAGAAAACTTACAAAGTAA+GGG 0.608059 3_4:-59420301 None:intergenic
GAAAATCGAGACCACAAGAG+AGG 0.609773 3_4:+59418538 Msa0510370:CDS
ACAAGACATTTATAAAGTCG+GGG 0.610983 3_4:+59420042 Msa0510370:CDS
TTATGGGAATTCCGTTAGAG+CGG 0.613562 3_4:+59420604 Msa0510370:three_prime_UTR
ACCAAGACTGTAAAAGTGAG+AGG 0.627754 3_4:+59419260 Msa0510370:CDS
GAGAAACAAATTGATTGGAG+TGG 0.629238 3_4:+59417459 Msa0510370:five_prime_UTR
ATCACCAGTGAAGTATGTTG+GGG 0.633381 3_4:-59420469 None:intergenic
GGAGAAATTGACTCAAGACA+TGG 0.634059 3_4:+59419203 Msa0510370:CDS
CAGAAGAGCACTGAACTCAA+CGG 0.657975 3_4:+59417482 Msa0510370:five_prime_UTR
CAAGACATTTATAAAGTCGG+GGG 0.675790 3_4:+59420043 Msa0510370:CDS
AGCGGCCAATTGGAGAATCG+CGG 0.677805 3_4:-59417542 None:intergenic
GGCCAATTGGAGAATCGCGG+TGG 0.690349 3_4:-59417539 None:intergenic
CATACAACGTGATCCAGTAG+CGG 0.720222 3_4:-59419857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAAAAATTAAGGTA+CGG - chr3_4:59418320-59418339 None:intergenic 10.0%
!!! CATCAAATTTTAAAAAATTA+AGG - chr3_4:59418325-59418344 None:intergenic 10.0%
!! AAAAATAGTTATAAGATTAT+AGG + chr3_4:59418934-59418953 Msa0510370:intron 10.0%
!! TTGAATAATTAATCAAAAAA+GGG - chr3_4:59419708-59419727 None:intergenic 10.0%
!! ATTGAATAATTAATCAAAAA+AGG - chr3_4:59419709-59419728 None:intergenic 10.0%
!!! TAATTAATAATTTTCAAGAA+TGG - chr3_4:59420331-59420350 None:intergenic 10.0%
!!! ATTATTTTATTTTACATACA+TGG + chr3_4:59420490-59420509 Msa0510370:three_prime_UTR 10.0%
!!! TCTATTTTTATTTTTTAACT+CGG + chr3_4:59420681-59420700 Msa0510370:three_prime_UTR 10.0%
!! TATTGAAAAAAAAGTGAAAT+AGG + chr3_4:59417425-59417444 Msa0510370:five_prime_UTR 15.0%
!! GAATATGAAGTAAAATTTAA+AGG - chr3_4:59417602-59417621 None:intergenic 15.0%
!!! TTGTAAGTTTTTTTTTTGTT+TGG + chr3_4:59418054-59418073 Msa0510370:intron 15.0%
!!! AACAACAATTTTTGAATTTA+CGG - chr3_4:59418089-59418108 None:intergenic 15.0%
!!! ATTTTAAAAAATTAAGGTAC+GGG - chr3_4:59418319-59418338 None:intergenic 15.0%
!! AAAAAAAAAACTAACCTTTA+GGG - chr3_4:59418577-59418596 None:intergenic 15.0%
!! AAAAAAAAAAACTAACCTTT+AGG - chr3_4:59418578-59418597 None:intergenic 15.0%
!!! TAAAAAAAACATTTTCACAA+AGG + chr3_4:59419638-59419657 Msa0510370:CDS 15.0%
!! TTGACATTTAACAAATAAAA+TGG - chr3_4:59419750-59419769 None:intergenic 15.0%
!!! TTTGAAATCATAATTTTGTA+GGG + chr3_4:59419786-59419805 Msa0510370:intron 15.0%
!! AAAACAATTTAATGAAATAG+AGG - chr3_4:59420244-59420263 None:intergenic 15.0%
!!! CTATTTCATTAAATTGTTTT+TGG + chr3_4:59420244-59420263 Msa0510370:CDS 15.0%
!!! TTGCTTTTTGTGTAATTTAT+AGG + chr3_4:59417717-59417736 Msa0510370:intron 20.0%
!!! TGCTTTTTGTGTAATTTATA+GGG + chr3_4:59417718-59417737 Msa0510370:intron 20.0%
!!! TTTTTTTTTCATTATTTGGG+TGG + chr3_4:59417774-59417793 Msa0510370:intron 20.0%
!!! TTTTTTTTCATTATTTGGGT+GGG + chr3_4:59417775-59417794 Msa0510370:intron 20.0%
!!! AACTATGTTTTTTTTTGTTG+TGG + chr3_4:59417907-59417926 Msa0510370:intron 20.0%
!!! ATAACAATGTTTCTAAATGT+GGG - chr3_4:59417968-59417987 None:intergenic 20.0%
!!! TATAACAATGTTTCTAAATG+TGG - chr3_4:59417969-59417988 None:intergenic 20.0%
!! CATTTAGAAACATTGTTATA+AGG + chr3_4:59417969-59417988 Msa0510370:intron 20.0%
!! AAACATTGTTATAAGGTTAT+AGG + chr3_4:59417976-59417995 Msa0510370:intron 20.0%
!!! ACAACAATTTTTGAATTTAC+GGG - chr3_4:59418088-59418107 None:intergenic 20.0%
!!! TAATGTTTTTACAACAACAA+TGG + chr3_4:59418245-59418264 Msa0510370:intron 20.0%
!! TTGTGTAAAGATTCTATATA+AGG - chr3_4:59418725-59418744 None:intergenic 20.0%
!! ATAAATTGCAGATATAAATG+CGG - chr3_4:59418795-59418814 None:intergenic 20.0%
!! TCCCAATTAAAATAAGTTTA+CGG + chr3_4:59418898-59418917 Msa0510370:intron 20.0%
!!! ACCGTAAACTTATTTTAATT+GGG - chr3_4:59418902-59418921 None:intergenic 20.0%
!!! AACCGTAAACTTATTTTAAT+TGG - chr3_4:59418903-59418922 None:intergenic 20.0%
!!! TTATAACTATTTTTTGCAAG+TGG - chr3_4:59418928-59418947 None:intergenic 20.0%
!!! TTTTTACATTTAGTATTCCT+CGG + chr3_4:59419297-59419316 Msa0510370:CDS 20.0%
!!! ATAAATGTTATTTATCTGAC+AGG + chr3_4:59419499-59419518 Msa0510370:intron 20.0%
!! CTACAAAATTATGATTTCAA+AGG - chr3_4:59419787-59419806 None:intergenic 20.0%
!!! CTTTGAAATCATAATTTTGT+AGG + chr3_4:59419785-59419804 Msa0510370:intron 20.0%
!!! TTGAAATCATAATTTTGTAG+GGG + chr3_4:59419787-59419806 Msa0510370:intron 20.0%
!!! TTTATTTTACATACATGGTA+AGG + chr3_4:59420495-59420514 Msa0510370:three_prime_UTR 20.0%
!!! TTATTTTACATACATGGTAA+GGG + chr3_4:59420496-59420515 Msa0510370:three_prime_UTR 20.0%
!! AAGTATGTAATTCAACTTTA+TGG + chr3_4:59420587-59420606 Msa0510370:three_prime_UTR 20.0%
!! AGTATGTAATTCAACTTTAT+GGG + chr3_4:59420588-59420607 Msa0510370:three_prime_UTR 20.0%
! GAAATGAGAAACAAATTGAT+TGG + chr3_4:59417454-59417473 Msa0510370:five_prime_UTR 25.0%
! GAAGTAAAATTTAAAGGTGA+AGG - chr3_4:59417596-59417615 None:intergenic 25.0%
!!! TTTTTTTCATTATTTGGGTG+GGG + chr3_4:59417776-59417795 Msa0510370:intron 25.0%
!!! TTTCTTTCACATTGATTTTG+AGG + chr3_4:59417809-59417828 Msa0510370:intron 25.0%
! AAAAACATAGTTTCTGAATG+TGG - chr3_4:59417899-59417918 None:intergenic 25.0%
! TATAAGGTTATAGGTGTTTA+CGG + chr3_4:59417985-59418004 Msa0510370:intron 25.0%
!! CAACAATTTTTGAATTTACG+GGG - chr3_4:59418087-59418106 None:intergenic 25.0%
! CAAAAAACACTATAATTGCA+GGG + chr3_4:59418203-59418222 Msa0510370:intron 25.0%
! AAATTTGATGTATTTCGTAC+TGG + chr3_4:59418335-59418354 Msa0510370:intron 25.0%
! AATTTGATGTATTTCGTACT+GGG + chr3_4:59418336-59418355 Msa0510370:intron 25.0%
!! TATTTTCACACAAACAACAA+TGG - chr3_4:59418659-59418678 None:intergenic 25.0%
! TAAATTGCAGATATAAATGC+GGG - chr3_4:59418794-59418813 None:intergenic 25.0%
!!! TTTGTGTTTGCTATTAACAT+AGG + chr3_4:59418870-59418889 Msa0510370:intron 25.0%
!!! TTGTGTTTGCTATTAACATA+GGG + chr3_4:59418871-59418890 Msa0510370:intron 25.0%
! TTTGAGAAGTTCAATAAATC+TGG + chr3_4:59419098-59419117 Msa0510370:intron 25.0%
! ATCTGGATATTGATATCTAT+TGG + chr3_4:59419115-59419134 Msa0510370:intron 25.0%
! TCTGGATATTGATATCTATT+GGG + chr3_4:59419116-59419135 Msa0510370:intron 25.0%
! AAAATCAAGAGAACATTCAA+AGG + chr3_4:59419332-59419351 Msa0510370:CDS 25.0%
!! TCAATGATTTTTGATGGAAA+AGG + chr3_4:59419443-59419462 Msa0510370:intron 25.0%
!!! AAATGGCTCTTGTTATTAAA+GGG - chr3_4:59419733-59419752 None:intergenic 25.0%
!!! AAAATGGCTCTTGTTATTAA+AGG - chr3_4:59419734-59419753 None:intergenic 25.0%
!! ATTTGTTAAATGTCAATCCA+CGG + chr3_4:59419754-59419773 Msa0510370:intron 25.0%
!! TGAAATCATAATTTTGTAGG+GGG + chr3_4:59419788-59419807 Msa0510370:intron 25.0%
! GTACAAGACATTTATAAAGT+CGG + chr3_4:59420040-59420059 Msa0510370:CDS 25.0%
! TACAAGACATTTATAAAGTC+GGG + chr3_4:59420041-59420060 Msa0510370:CDS 25.0%
! TGGACATGAAAATTGTAAAA+GGG - chr3_4:59420132-59420151 None:intergenic 25.0%
! TTGGACATGAAAATTGTAAA+AGG - chr3_4:59420133-59420152 None:intergenic 25.0%
!!! ATTGGTTTTCTTTTAACCAT+TGG - chr3_4:59420169-59420188 None:intergenic 25.0%
! AGAGAAAACTTACAAAGTAA+GGG - chr3_4:59420304-59420323 None:intergenic 25.0%
! AAGAGAAAACTTACAAAGTA+AGG - chr3_4:59420305-59420324 None:intergenic 25.0%
!!! GATTTAATTTTGTTTGCCAT+TGG + chr3_4:59420364-59420383 Msa0510370:intron 25.0%
!! TATTTTACATACATGGTAAG+GGG + chr3_4:59420497-59420516 Msa0510370:three_prime_UTR 25.0%
TTCTACTTGACGAAATTCTA+TGG - chr3_4:59417517-59417536 None:intergenic 30.0%
!!! TTTTTTCATTATTTGGGTGG+GGG + chr3_4:59417777-59417796 Msa0510370:intron 30.0%
!!! ATTTTGAGGTACTACTGTTA+GGG + chr3_4:59417823-59417842 Msa0510370:intron 30.0%
TACAAATGCTATAATTGCAG+AGG - chr3_4:59418039-59418058 None:intergenic 30.0%
ATCTAAACAGAAAATCTTGC+AGG + chr3_4:59418171-59418190 Msa0510370:intron 30.0%
TCTAAACAGAAAATCTTGCA+GGG + chr3_4:59418172-59418191 Msa0510370:intron 30.0%
!!! CCTGCAATTATAGTGTTTTT+TGG - chr3_4:59418205-59418224 None:intergenic 30.0%
CCAAAAAACACTATAATTGC+AGG + chr3_4:59418202-59418221 Msa0510370:intron 30.0%
AACAATGGTAGTAATTCACT+TGG + chr3_4:59418260-59418279 Msa0510370:intron 30.0%
ACTTATGAGCAATGATTCAT+AGG - chr3_4:59418374-59418393 None:intergenic 30.0%
! ATTGAGAAGCTATTTCAAAC+TGG + chr3_4:59418398-59418417 Msa0510370:intron 30.0%
! GATTTTCTTCTTTCTTTGAC+GGG - chr3_4:59418525-59418544 None:intergenic 30.0%
! CGATTTTCTTCTTTCTTTGA+CGG - chr3_4:59418526-59418545 None:intergenic 30.0%
GCCTTCGTTTATTCAATTTA+CGG + chr3_4:59418627-59418646 Msa0510370:intron 30.0%
CCTTCGTTTATTCAATTTAC+GGG + chr3_4:59418628-59418647 Msa0510370:intron 30.0%
CTATATAAGGCACAAAAAGT+AGG - chr3_4:59418712-59418731 None:intergenic 30.0%
AAATTGCAGATATAAATGCG+GGG - chr3_4:59418793-59418812 None:intergenic 30.0%
ATTGCGTCTATAAACATCAT+AGG + chr3_4:59418828-59418847 Msa0510370:intron 30.0%
ACATAATCAACTTCTCTGAT+TGG - chr3_4:59419144-59419163 None:intergenic 30.0%
! CACAGTTCAATGATTTTTGA+TGG + chr3_4:59419437-59419456 Msa0510370:intron 30.0%
ATTTATCTGACAGGAAAGTA+TGG + chr3_4:59419508-59419527 Msa0510370:intron 30.0%
! TTTATCTGACAGGAAAGTAT+GGG + chr3_4:59419509-59419528 Msa0510370:intron 30.0%
! TTTTTGTTCCTATAGTCGTA+TGG + chr3_4:59419667-59419686 Msa0510370:CDS 30.0%
AAATTGCAAATACTCTGACA+GGG - chr3_4:59419992-59420011 None:intergenic 30.0%
TAAATTGCAAATACTCTGAC+AGG - chr3_4:59419993-59420012 None:intergenic 30.0%
CTGAAAATGAAGATAAAAGC+TGG - chr3_4:59420016-59420035 None:intergenic 30.0%
ACAAGACATTTATAAAGTCG+GGG + chr3_4:59420042-59420061 Msa0510370:CDS 30.0%
AATTCGAGATATAAGATCCT+TGG - chr3_4:59420080-59420099 None:intergenic 30.0%
GGACATGAAAATTGTAAAAG+GGG - chr3_4:59420131-59420150 None:intergenic 30.0%
! CATTGGTGATTTGATTACAT+TGG - chr3_4:59420152-59420171 None:intergenic 30.0%
CAATGTAATCAAATCACCAA+TGG + chr3_4:59420150-59420169 Msa0510370:intron 30.0%
AGAAAACCAATCTATATTGC+AGG + chr3_4:59420178-59420197 Msa0510370:intron 30.0%
!! AATTTTGTTTGCCATTGGTA+TGG + chr3_4:59420369-59420388 Msa0510370:intron 30.0%
! ATTTTACATACATGGTAAGG+GGG + chr3_4:59420498-59420517 Msa0510370:three_prime_UTR 30.0%
GAGAAACAAATTGATTGGAG+TGG + chr3_4:59417459-59417478 Msa0510370:five_prime_UTR 35.0%
GACGAAATTCTATGGTGTTT+CGG - chr3_4:59417509-59417528 None:intergenic 35.0%
TTGCGTAAACATGAGATTGA+AGG - chr3_4:59417689-59417708 None:intergenic 35.0%
!!! GATTTTGAGGTACTACTGTT+AGG + chr3_4:59417822-59417841 Msa0510370:intron 35.0%
! CATGATTTTTGCGATTTAGG+TGG + chr3_4:59417846-59417865 Msa0510370:intron 35.0%
ACATAGTTTCTGAATGTGGA+AGG - chr3_4:59417895-59417914 None:intergenic 35.0%
GGTGTTTACGGAAAGTTAAA+AGG + chr3_4:59417997-59418016 Msa0510370:intron 35.0%
CTAAACAGAAAATCTTGCAG+GGG + chr3_4:59418173-59418192 Msa0510370:intron 35.0%
AATGATTCATAGGTACGTGT+AGG - chr3_4:59418364-59418383 None:intergenic 35.0%
TATTCCTTAAGTCCACTGAT+AGG - chr3_4:59418457-59418476 None:intergenic 35.0%
! ATCAGTGGACTTAAGGAATA+AGG + chr3_4:59418457-59418476 Msa0510370:intron 35.0%
TGACGGGAATAAACATTCTT+GGG - chr3_4:59418509-59418528 None:intergenic 35.0%
TTGACGGGAATAAACATTCT+TGG - chr3_4:59418510-59418529 None:intergenic 35.0%
AATTTCTATCACCTCTCTTG+TGG - chr3_4:59418552-59418571 None:intergenic 35.0%
ACAAGAGAGGTGATAGAAAT+TGG + chr3_4:59418551-59418570 Msa0510370:CDS 35.0%
CCCGTAAATTGAATAAACGA+AGG - chr3_4:59418631-59418650 None:intergenic 35.0%
AACTTCTCAAAAAACACTCG+TGG - chr3_4:59419089-59419108 None:intergenic 35.0%
! GTTCTCTTGATTTTTGTTCG+TGG - chr3_4:59419326-59419345 None:intergenic 35.0%
!! GTTTTTCAGAAGATAGGAAG+AGG + chr3_4:59419535-59419554 Msa0510370:CDS 35.0%
ATTTCAAAGGATAAACTCCG+TGG - chr3_4:59419774-59419793 None:intergenic 35.0%
ATTGCAAGTTCTCACCAAAA+TGG - chr3_4:59419837-59419856 None:intergenic 35.0%
AAAGCACACTTTCTTATGTC+TGG - chr3_4:59419931-59419950 None:intergenic 35.0%
CAAGACATTTATAAAGTCGG+GGG + chr3_4:59420043-59420062 Msa0510370:CDS 35.0%
! AAAAAGACGACACTGATTGT+GGG + chr3_4:59420210-59420229 Msa0510370:CDS 35.0%
!! GGATAGGTTTTGTGAGAATT+TGG + chr3_4:59420429-59420448 Msa0510370:CDS 35.0%
AATCACCAGTGAAGTATGTT+GGG - chr3_4:59420473-59420492 None:intergenic 35.0%
TAATCACCAGTGAAGTATGT+TGG - chr3_4:59420474-59420493 None:intergenic 35.0%
! GGGGAATTTGTTCATATAGA+AGG + chr3_4:59420517-59420536 Msa0510370:three_prime_UTR 35.0%
TGAGAATCGCTTTACTTGAG+CGG - chr3_4:59417563-59417582 None:intergenic 40.0%
CATCATCACAGAAACAGCAA+TGG - chr3_4:59417624-59417643 None:intergenic 40.0%
! GGGCATGATTTTTGCGATTT+AGG + chr3_4:59417843-59417862 Msa0510370:intron 40.0%
TAGTTTCTGAATGTGGAAGG+TGG - chr3_4:59417892-59417911 None:intergenic 40.0%
GTCTCTATAAGCTGATGTCA+GGG - chr3_4:59418117-59418136 None:intergenic 40.0%
AGTCTCTATAAGCTGATGTC+AGG - chr3_4:59418118-59418137 None:intergenic 40.0%
! TGTTCCTATCAGTGGACTTA+AGG + chr3_4:59418450-59418469 Msa0510370:intron 40.0%
AAGGAAAGAAAAACCAGCTC+AGG + chr3_4:59418476-59418495 Msa0510370:CDS 40.0%
GTGATAGAAATTGGCCCTAA+AGG + chr3_4:59418560-59418579 Msa0510370:CDS 40.0%
! GCAAGAGTGTATCATGTATG+AGG - chr3_4:59418609-59418628 None:intergenic 40.0%
!! ATCAGTCGATTTTGCGAATC+AGG + chr3_4:59419178-59419197 Msa0510370:intron 40.0%
! GGAGAAATTGACTCAAGACA+TGG + chr3_4:59419203-59419222 Msa0510370:CDS 40.0%
ACCAAGACTGTAAAAGTGAG+AGG + chr3_4:59419260-59419279 Msa0510370:CDS 40.0%
!! TCCTCTCACTTTTACAGTCT+TGG - chr3_4:59419264-59419283 None:intergenic 40.0%
CAAAGTTCTCGCTAGATCTA+AGG + chr3_4:59419358-59419377 Msa0510370:CDS 40.0%
!! GGGAGAGTTTTTCAGAAGAT+AGG + chr3_4:59419529-59419548 Msa0510370:CDS 40.0%
TTGCATACATGGACAGCTTA+TGG + chr3_4:59419562-59419581 Msa0510370:CDS 40.0%
! GCTTATGGTTTAGCCTTTAC+AGG + chr3_4:59419577-59419596 Msa0510370:CDS 40.0%
! TGTACGAAGCATTCCTGTAA+AGG - chr3_4:59419593-59419612 None:intergenic 40.0%
GAATGCTTCGTACAGAGATA+AGG + chr3_4:59419599-59419618 Msa0510370:CDS 40.0%
CGTGTTTACCATACGACTAT+AGG - chr3_4:59419678-59419697 None:intergenic 40.0%
CAAAATGGCAGAAGATCAGA+AGG - chr3_4:59419822-59419841 None:intergenic 40.0%
!! CTTCTGATCTTCTGCCATTT+TGG + chr3_4:59419820-59419839 Msa0510370:CDS 40.0%
ATCACGTTGTATGTTGTTGC+TGG + chr3_4:59419867-59419886 Msa0510370:CDS 40.0%
GATATAAGATCCTTGGTCTC+TGG - chr3_4:59420073-59420092 None:intergenic 40.0%
!! AATTCCACTTTTAGTGCCCA+AGG + chr3_4:59420096-59420115 Msa0510370:CDS 40.0%
ATTACCTTGGGCACTAAAAG+TGG - chr3_4:59420103-59420122 None:intergenic 40.0%
AAAGGGGTCGTTATTACCTT+GGG - chr3_4:59420115-59420134 None:intergenic 40.0%
AAAAGGGGTCGTTATTACCT+TGG - chr3_4:59420116-59420135 None:intergenic 40.0%
! TCAGTGTCGTCTTTTTGTTG+TGG - chr3_4:59420206-59420225 None:intergenic 40.0%
! CAAAAAGACGACACTGATTG+TGG + chr3_4:59420209-59420228 Msa0510370:CDS 40.0%
!! ACCTGAGAATTTTAGCATGG+AGG + chr3_4:59420274-59420293 Msa0510370:CDS 40.0%
!! CCTGAGAATTTTAGCATGGA+GGG + chr3_4:59420275-59420294 Msa0510370:CDS 40.0%
!! CTGAGAATTTTAGCATGGAG+GGG + chr3_4:59420276-59420295 Msa0510370:CDS 40.0%
TTTCATCTGCACCATACCAA+TGG - chr3_4:59420383-59420402 None:intergenic 40.0%
TGGTGCAGATGAAAAAAGAC+TGG + chr3_4:59420389-59420408 Msa0510370:intron 40.0%
TTACCTTCGAAGATCTGGAT+AGG + chr3_4:59420413-59420432 Msa0510370:CDS 40.0%
AAACCTATCCAGATCTTCGA+AGG - chr3_4:59420419-59420438 None:intergenic 40.0%
! GAGAATTTGGTTCCTTGAAC+TGG + chr3_4:59420442-59420461 Msa0510370:exon 40.0%
ATATCCCCAACATACTTCAC+TGG + chr3_4:59420465-59420484 Msa0510370:three_prime_UTR 40.0%
ATCACCAGTGAAGTATGTTG+GGG - chr3_4:59420472-59420491 None:intergenic 40.0%
ACTCTTCAGGACAAATCAAC+TGG - chr3_4:59420552-59420571 None:intergenic 40.0%
TTATGGGAATTCCGTTAGAG+CGG + chr3_4:59420604-59420623 Msa0510370:three_prime_UTR 40.0%
ATCAATTTCAGCCGCTCTAA+CGG - chr3_4:59420618-59420637 None:intergenic 40.0%
!! CAGAAGAGCACTGAACTCAA+CGG + chr3_4:59417482-59417501 Msa0510370:five_prime_UTR 45.0%
TGTGGTATCGTTCCTACCAA+CGG + chr3_4:59417925-59417944 Msa0510370:intron 45.0%
CCACTGATAGGAACAATGAC+AGG - chr3_4:59418445-59418464 None:intergenic 45.0%
CCTGTCATTGTTCCTATCAG+TGG + chr3_4:59418442-59418461 Msa0510370:intron 45.0%
GAAAATCGAGACCACAAGAG+AGG + chr3_4:59418538-59418557 Msa0510370:CDS 45.0%
!! GTCGATTTTGCGAATCAGGA+AGG + chr3_4:59419182-59419201 Msa0510370:intron 45.0%
CTGATGAGCATCAGCGATAT+TGG - chr3_4:59419231-59419250 None:intergenic 45.0%
GAAGAGGTCGTTTGCATACA+TGG + chr3_4:59419551-59419570 Msa0510370:CDS 45.0%
!! ACAGAGATAAGGTGCTGAGT+TGG + chr3_4:59419610-59419629 Msa0510370:CDS 45.0%
!! CATAATTTTGTAGGGGGCAC+TGG + chr3_4:59419794-59419813 Msa0510370:intron 45.0%
CATACAACGTGATCCAGTAG+CGG - chr3_4:59419860-59419879 None:intergenic 45.0%
CTCTTGAAATGACCGATCCA+AGG + chr3_4:59419893-59419912 Msa0510370:CDS 45.0%
ACATTTATAAAGTCGGGGGC+AGG + chr3_4:59420047-59420066 Msa0510370:CDS 45.0%
GTGGCACCTGCAATATAGAT+TGG - chr3_4:59420187-59420206 None:intergenic 45.0%
!! CGCACCTGAGAATTTTAGCA+TGG + chr3_4:59420271-59420290 Msa0510370:CDS 45.0%
CCCTCCATGCTAAAATTCTC+AGG - chr3_4:59420278-59420297 None:intergenic 45.0%
CTGGTTTACCTTCGAAGATC+TGG + chr3_4:59420408-59420427 Msa0510370:CDS 45.0%
TGTTGGGGATATCCAGTTCA+AGG - chr3_4:59420457-59420476 None:intergenic 45.0%
GATAGCTGTACTCACTCTTC+AGG - chr3_4:59420565-59420584 None:intergenic 45.0%
!! ATAATGAAAAAAAAAAAAAA+AGG - chr3_4:59417769-59417788 None:intergenic 5.0%
!!! TTTTTTTTTTTTTCATTATT+TGG + chr3_4:59417770-59417789 Msa0510370:intron 5.0%
!!! TTTTTTTTTTTTCATTATTT+GGG + chr3_4:59417771-59417790 Msa0510370:intron 5.0%
ATCCACCGCGATTCTCCAAT+TGG + chr3_4:59417537-59417556 Msa0510370:five_prime_UTR 50.0%
GCTTTACTTGAGCGGCCAAT+TGG - chr3_4:59417555-59417574 None:intergenic 50.0%
! ATTTTTGTTCGTGGTCGCCG+AGG - chr3_4:59419317-59419336 None:intergenic 50.0%
GAGAACTTGCAATCCGCTAC+TGG + chr3_4:59419844-59419863 Msa0510370:CDS 50.0%
TTCAAGCTGCTGCCTTGGAT+CGG - chr3_4:59419908-59419927 None:intergenic 50.0%
AGCGGCCAATTGGAGAATCG+CGG - chr3_4:59417545-59417564 None:intergenic 55.0%
GTGAGCTTAGCTCCGTTGGT+AGG - chr3_4:59417940-59417959 None:intergenic 55.0%
CCTTGTGAGCTTAGCTCCGT+TGG - chr3_4:59417944-59417963 None:intergenic 55.0%
CCAACGGAGCTAAGCTCACA+AGG + chr3_4:59417941-59417960 Msa0510370:intron 55.0%
CTTGGGCACAAATCCTGAGC+TGG - chr3_4:59418492-59418511 None:intergenic 55.0%
! TCTGGTTCAAGCTGCTGCCT+TGG - chr3_4:59419913-59419932 None:intergenic 55.0%
GGCCAATTGGAGAATCGCGG+TGG - chr3_4:59417542-59417561 None:intergenic 60.0%
CGGGGGCAGGCCAGAGACCA+AGG + chr3_4:59420060-59420079 Msa0510370:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 59417407 59420810 59417407 ID=Msa0510370;Name=Msa0510370
chr3_4 mRNA 59417407 59420810 59417407 ID=Msa0510370-mRNA-1;Parent=Msa0510370;Name=Msa0510370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=180|1|1|1|0.85|0.87|8|351|304
chr3_4 exon 59417407 59417587 59417407 ID=Msa0510370-mRNA-1:exon:13929;Parent=Msa0510370-mRNA-1
chr3_4 exon 59418462 59418581 59418462 ID=Msa0510370-mRNA-1:exon:13930;Parent=Msa0510370-mRNA-1
chr3_4 exon 59419183 59419417 59419183 ID=Msa0510370-mRNA-1:exon:13931;Parent=Msa0510370-mRNA-1
chr3_4 exon 59419521 59419688 59419521 ID=Msa0510370-mRNA-1:exon:13932;Parent=Msa0510370-mRNA-1
chr3_4 exon 59419807 59419941 59419807 ID=Msa0510370-mRNA-1:exon:13933;Parent=Msa0510370-mRNA-1
chr3_4 exon 59420036 59420117 59420036 ID=Msa0510370-mRNA-1:exon:13934;Parent=Msa0510370-mRNA-1
chr3_4 exon 59420200 59420310 59420200 ID=Msa0510370-mRNA-1:exon:13935;Parent=Msa0510370-mRNA-1
chr3_4 exon 59420397 59420810 59420397 ID=Msa0510370-mRNA-1:exon:13936;Parent=Msa0510370-mRNA-1
chr3_4 five_prime_UTR 59417407 59417586 59417407 ID=Msa0510370-mRNA-1:five_prime_utr;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59417587 59417587 59417587 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59418462 59418581 59418462 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59419183 59419417 59419183 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59419521 59419688 59419521 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59419807 59419941 59419807 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59420036 59420117 59420036 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59420200 59420310 59420200 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 CDS 59420397 59420459 59420397 ID=Msa0510370-mRNA-1:cds;Parent=Msa0510370-mRNA-1
chr3_4 three_prime_UTR 59420460 59420810 59420460 ID=Msa0510370-mRNA-1:three_prime_utr;Parent=Msa0510370-mRNA-1
Gene Sequence

>Msa0510370

ATGGACTTAAGGAATAAGGAAAGAAAAACCAGCTCAGGATTTGTGCCCAAGAATGTTTATTCCCGTCAAAGAAAGAAGAAAATCGAGACCACAAGAGAGGTGATAGAAATTGGCCCTAAAGTCGATTTTGCGAATCAGGAAGGAGAAATTGACTCAAGACATGGAACCAATATCGCTGATGCTCATCAGAAAAGCAAAACCAAGACTGTAAAAGTGAGAGGAAGTGATAGTTCGATTTTTACATTTAGTATTCCTCGGCGACCACGAACAAAAATCAAGAGAACATTCAAAGGCAACAAAGTTCTCGCTAGATCTAAGGAAAAGCTAAACAGTCGAGTCTTTGATAATTTCTTAGCGAAAGTATGGGAGAGTTTTTCAGAAGATAGGAAGAGGTCGTTTGCATACATGGACAGCTTATGGTTTAGCCTTTACAGGAATGCTTCGTACAGAGATAAGGTGCTGAGTTGGATTGATAAAAAAAACATTTTCACAAAGGCATATGTTTTTGTTCCTATAGTCGTATGGGGGCACTGGAACCTTCTGATCTTCTGCCATTTTGGTGAGAACTTGCAATCCGCTACTGGATCACGTTGTATGTTGTTGCTGGATTCTCTTGAAATGACCGATCCAAGGCAGCAGCTTGAACCAGACATAAGAAAATTTGTACAAGACATTTATAAAGTCGGGGGCAGGCCAGAGACCAAGGATCTTATATCTCGAATTCCACTTTTAGTGCCCAAGGTGCCACAACAAAAAGACGACACTGATTGTGGGAACTTTGTCCTCTATTTCATTAAATTGTTTTTGGAACGCGCACCTGAGAATTTTAGCATGGAGGGGTACCCTTACTTTATGAAAAAAGACTGGTTTACCTTCGAAGATCTGGATAGGTTTTGTGAGAATTTGGTTCCTTGA

Protein sequence

>Msa0510370

MDLRNKERKTSSGFVPKNVYSRQRKKKIETTREVIEIGPKVDFANQEGEIDSRHGTNIADAHQKSKTKTVKVRGSDSSIFTFSIPRRPRTKIKRTFKGNKVLARSKEKLNSRVFDNFLAKVWESFSEDRKRSFAYMDSLWFSLYRNASYRDKVLSWIDKKNIFTKAYVFVPIVVWGHWNLLIFCHFGENLQSATGSRCMLLLDSLEMTDPRQQLEPDIRKFVQDIYKVGGRPETKDLISRIPLLVPKVPQQKDDTDCGNFVLYFIKLFLERAPENFSMEGYPYFMKKDWFTFEDLDRFCENLVP*