AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838070 MtrunA17_Chr5g0405281 100.000 258 0 0 1 258 1 258 0.0 527
Msa0838070 MtrunA17_Chr7g0247311 95.736 258 11 0 1 258 1 258 0.0 508
Msa0838070 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.45e-23 96.3
Msa0838070 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0838070 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0838070 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0838070 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 9.52e-23 94.0
Msa0838070 MtrunA17_Chr2g0283311 39.316 117 65 3 98 214 51 161 4.42e-18 80.1
Msa0838070 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 7.58e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838070 AT4G36130.1 92.636 258 19 0 1 258 1 258 1.25e-180 496
Msa0838070 AT2G18020.1 91.860 258 21 0 1 258 1 258 7.56e-175 482
Msa0838070 AT3G51190.1 84.519 239 36 1 1 238 1 239 5.84e-152 424
Msa0838070 ATCG01310.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0838070 ATCG00830.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0838070 AT2G44065.3 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0838070 AT2G44065.1 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0838070 AT2G44065.2 36.691 139 80 3 97 234 58 189 7.53e-18 80.1

Find 114 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGCTTACCACAAATTT+AGG 0.139039 5_4:-12291846 Msa0838070:CDS
TTCTGTTTCTTATATCTAAA+AGG 0.141313 5_4:+12293293 None:intergenic
GTTTCATATAAATAAATAAA+TGG 0.176001 5_4:+12291502 None:intergenic
TTCATAGTTTACCTTCCTTC+TGG 0.178330 5_4:-12291435 Msa0838070:three_prime_UTR
GAGTCGTAGGTTTAGGTTTC+CGG 0.212094 5_4:-12293515 Msa0838070:five_prime_UTR
GCGAGATGGGTAGGGTTATC+AGG 0.218220 5_4:-12293493 Msa0838070:exon
AAATAAATAAATGGGGAAAA+AGG 0.228166 5_4:+12291511 None:intergenic
ACCACCGTGCGGCGATGATA+TGG 0.271441 5_4:+12293540 None:intergenic
GCTAGTGGTGCACCGCGACC+TGG 0.291779 5_4:+12293335 None:intergenic
CCTTCAGGAATCATCCTTAA+TGG 0.296951 5_4:+12293182 None:intergenic
CTCAAAATACCCAAGTAGTT+TGG 0.316292 5_4:+12291536 None:intergenic
TTTCATATAAATAAATAAAT+GGG 0.317945 5_4:+12291503 None:intergenic
TCATAGTTTACCTTCCTTCT+GGG 0.330660 5_4:-12291434 Msa0838070:three_prime_UTR
TTCAGAGAAGTTAGGGTTTG+AGG 0.339397 5_4:+12293570 None:intergenic
TAATGCTTACCACAAATTTA+GGG 0.348170 5_4:-12291845 Msa0838070:CDS
AACCTAGAGGTATCATTATC+AGG 0.354338 5_4:+12293068 None:intergenic
GGCCTTTGCGATGGTGGGTG+TGG 0.359733 5_4:+12293435 None:intergenic
TCCTCTTCACCCTAAATTTG+TGG 0.369145 5_4:+12291836 None:intergenic
AAATAGTCTTATCAGTTAAT+CGG 0.370160 5_4:+12291624 None:intergenic
CGCAATTTATTTGTCTAGGT+TGG 0.373638 5_4:-12291349 Msa0838070:three_prime_UTR
CGTTTCCGCAGTCTCGATTT+CGG 0.389930 5_4:-12293407 Msa0838070:CDS
GAAATGAGTTCAGAGAAGTT+AGG 0.390313 5_4:+12293562 None:intergenic
GCTATGATTGGGCAAGTTGC+AGG 0.391634 5_4:-12291904 Msa0838070:CDS
AGCTGCTTCCGCTGCTGCTA+AGG 0.391726 5_4:-12291647 Msa0838070:CDS
GTGGTTAGAGTCGTAGGTTT+AGG 0.393021 5_4:-12293522 Msa0838070:five_prime_UTR
CTAAGAGAACTGGTCGTCTC+AGG 0.393643 5_4:-12291675 Msa0838070:CDS
AAATGAGTTCAGAGAAGTTA+GGG 0.407150 5_4:+12293563 None:intergenic
TTTCGTTCACTACTCCTTTG+AGG 0.415458 5_4:+12293369 None:intergenic
GCCTTTGCGATGGTGGGTGT+GGG 0.420149 5_4:+12293436 None:intergenic
CCTCCATGAGGATGTTCAAC+TGG 0.422258 5_4:+12291778 None:intergenic
CAGGACAGTTTATTTATTGT+GGG 0.425190 5_4:-12293238 Msa0838070:CDS
GACAGGATTAAGCTACCATC+AGG 0.430549 5_4:-12291958 Msa0838070:intron
TTACAGATAACCGCACCTTC+AGG 0.435711 5_4:+12293167 None:intergenic
TTAGGGTGAAGAGGAATTGT+TGG 0.435774 5_4:-12291828 Msa0838070:CDS
TCTGTTTCTTATATCTAAAA+GGG 0.435806 5_4:+12293294 None:intergenic
GTTAGGCGTGATGCTCCTCC+TGG 0.436286 5_4:-12291721 Msa0838070:CDS
CTCATTGCTGCTAAGAGAAC+TGG 0.437152 5_4:-12291685 Msa0838070:CDS
TCGAGACTGCGGAAACGTGC+TGG 0.440209 5_4:+12293413 None:intergenic
AACTGAGAAGCCAATGCTTA+AGG 0.445753 5_4:-12291872 Msa0838070:CDS
GGAGGTAACCACCAGCATAT+TGG 0.446084 5_4:-12291757 Msa0838070:CDS
ACAGGACAGTTTATTTATTG+TGG 0.446996 5_4:-12293239 Msa0838070:CDS
GGTTTAGGTTTCCGGCGAGA+TGG 0.456405 5_4:-12293507 Msa0838070:exon
CTCGATTTCGGTGAAAGAAA+CGG 0.463830 5_4:-12293395 Msa0838070:CDS
GCATTACCAGCCTTAAGCAT+TGG 0.465748 5_4:+12291862 None:intergenic
GTTGCGCAATTTATTTGTCT+AGG 0.474140 5_4:-12291353 Msa0838070:three_prime_UTR
AGTGAGTGCAGAGCTATGAT+TGG 0.480414 5_4:-12291916 Msa0838070:CDS
GTTTAGGTTTCCGGCGAGAT+GGG 0.481065 5_4:-12293506 Msa0838070:exon
TGCTGGGCCTTTGCGATGGT+GGG 0.484311 5_4:+12293430 None:intergenic
AGGTTTCCGGCGAGATGGGT+AGG 0.490187 5_4:-12293502 Msa0838070:exon
CGAGACTGCGGAAACGTGCT+GGG 0.490564 5_4:+12293414 None:intergenic
TTGGACATGCTAGTACTGTT+AGG 0.490772 5_4:-12291738 Msa0838070:CDS
TTCATACCTTGTCCAGGTAG+TGG 0.491989 5_4:-12291304 Msa0838070:three_prime_UTR
CTAGTGGTGCACCGCGACCT+GGG 0.492115 5_4:+12293336 None:intergenic
GTGCTGGGCCTTTGCGATGG+TGG 0.492579 5_4:+12293429 None:intergenic
ATCATAGCTCTGCACTCACT+TGG 0.492967 5_4:+12291919 None:intergenic
ACAATCTTCTTTGCCCCTGA+TGG 0.501695 5_4:+12291943 None:intergenic
AATTGTTGGCCTAAGGTTCG+TGG 0.507434 5_4:-12291814 Msa0838070:CDS
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 5_4:-12291709 Msa0838070:CDS
GGTTTCTTAATTGTAAGTGC+AGG 0.509090 5_4:-12291328 Msa0838070:three_prime_UTR
GAAGAGGAATTGTTGGCCTA+AGG 0.511303 5_4:-12291821 Msa0838070:CDS
ACTATTTGAAGAGATTCTTA+CGG 0.514311 5_4:-12291608 Msa0838070:three_prime_UTR
ATCATTCACGACCCAGGTCG+CGG 0.520973 5_4:-12293347 Msa0838070:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 5_4:+12291703 None:intergenic
ATTGGGCAAGTTGCAGGTGG+AGG 0.539757 5_4:-12291898 Msa0838070:CDS
GTGAGTGCAGAGCTATGATT+GGG 0.540155 5_4:-12291915 Msa0838070:CDS
GGTTTCCGGCGAGATGGGTA+GGG 0.540978 5_4:-12293501 Msa0838070:exon
TACTAGCATGTCCAATATGC+TGG 0.543123 5_4:+12291746 None:intergenic
GTGGGTGTGGGACTTGAAAA+CGG 0.548294 5_4:+12293448 None:intergenic
GAGAAGCCAATGCTTAAGGC+TGG 0.549710 5_4:-12291868 Msa0838070:CDS
TGATGCTCCTCCTGGACAGA+AGG 0.551156 5_4:-12291713 Msa0838070:CDS
ACCACAAATTTAGGGTGAAG+AGG 0.551702 5_4:-12291837 Msa0838070:CDS
TCTTATATCTAAAAGGGTGT+CGG 0.552820 5_4:+12293300 None:intergenic
AGGGCACAACGTAAAGGAGC+AGG 0.552983 5_4:-12293473 Msa0838070:CDS
CGAGATGGGTAGGGTTATCA+GGG 0.554090 5_4:-12293492 Msa0838070:exon
ATAGTAAAACAACCACTACC+TGG 0.555732 5_4:+12291292 None:intergenic
GAAAGAAACGGTTACCTCAA+AGG 0.558738 5_4:-12293383 Msa0838070:CDS
GTTATCAGGGCACAACGTAA+AGG 0.562139 5_4:-12293479 Msa0838070:CDS
GCAGGATTCATACCTTGTCC+AGG 0.564769 5_4:-12291310 Msa0838070:three_prime_UTR
AACGAAATCATTCACGACCC+AGG 0.570840 5_4:-12293353 Msa0838070:CDS
TAAGAGAACTGGTCGTCTCA+GGG 0.573235 5_4:-12291674 Msa0838070:CDS
TCGCGGTGCACCACTAGCTA+AGG 0.577052 5_4:-12293330 Msa0838070:CDS
CGCACGGTGGTTAGAGTCGT+AGG 0.577340 5_4:-12293528 Msa0838070:five_prime_UTR
ATGAAACTATTACATGACAA+TGG 0.580194 5_4:-12291486 Msa0838070:three_prime_UTR
AATCCAGTTGAACATCCTCA+TGG 0.581222 5_4:-12291781 Msa0838070:CDS
AACGTGCTGGGCCTTTGCGA+TGG 0.587555 5_4:+12293426 None:intergenic
TTCATATAAATAAATAAATG+GGG 0.591328 5_4:+12291504 None:intergenic
ATAGCCACACCACGAACCTT+AGG 0.594313 5_4:+12291805 None:intergenic
TCCCACACCCACCATCGCAA+AGG 0.598343 5_4:-12293437 Msa0838070:CDS
CCATTAAGGATGATTCCTGA+AGG 0.598808 5_4:-12293182 Msa0838070:CDS
TTGGCCTAAGGTTCGTGGTG+TGG 0.606540 5_4:-12291809 Msa0838070:CDS
ACAGGATTAAGCTACCATCA+GGG 0.606815 5_4:-12291957 Msa0838070:intron
GTTGAACATCCTCATGGAGG+AGG 0.607255 5_4:-12291775 Msa0838070:CDS
CTAGATGAAACCCAGAAGGA+AGG 0.618373 5_4:+12291424 None:intergenic
GCTGCTGAGGGACTTTACAC+AGG 0.622566 5_4:-12293257 Msa0838070:CDS
ATCCTGATAATGATACCTCT+AGG 0.627712 5_4:-12293070 Msa0838070:intron
ATGATTGGGCAAGTTGCAGG+TGG 0.627869 5_4:-12291901 Msa0838070:CDS
AAGGATGATTCCTGAAGGTG+CGG 0.634290 5_4:-12293177 Msa0838070:CDS
CAGGATTAAGCTACCATCAG+GGG 0.634909 5_4:-12291956 Msa0838070:CDS
TGTAATGTTGAACATCATGT+TGG 0.640016 5_4:-12293149 Msa0838070:CDS
TTAATCGGCCTTAGCAGCAG+CGG 0.643504 5_4:+12291639 None:intergenic
AGAACTAGATGAAACCCAGA+AGG 0.643968 5_4:+12291420 None:intergenic
GAACATCATGTTGGTGATCG+TGG 0.646474 5_4:-12293140 Msa0838070:CDS
GATAACCCTACCCATCTCGC+CGG 0.648671 5_4:+12293496 None:intergenic
TCCATATCATCGCCGCACGG+TGG 0.651259 5_4:-12293541 Msa0838070:five_prime_UTR
TTTCACCGAAATCGAGACTG+CGG 0.661724 5_4:+12293402 None:intergenic
TAGCATGTCCAATATGCTGG+TGG 0.670638 5_4:+12291749 None:intergenic
CGGAATGTGACCTTAGCTAG+TGG 0.672073 5_4:+12293320 None:intergenic
AAACAACCACTACCTGGACA+AGG 0.683470 5_4:+12291298 None:intergenic
AAGAGAACTGGTCGTCTCAG+GGG 0.684178 5_4:-12291673 Msa0838070:CDS
TGGTGGTTACCTCCTCCATG+AGG 0.690890 5_4:+12291766 None:intergenic
AGACCAACCTTCTGTCCAGG+AGG 0.695738 5_4:+12291706 None:intergenic
ATTTCCATATCATCGCCGCA+CGG 0.725893 5_4:-12293544 Msa0838070:five_prime_UTR
CCAGTTGAACATCCTCATGG+AGG 0.726090 5_4:-12291778 Msa0838070:CDS
CTACGACTCTAACCACCGTG+CGG 0.804232 5_4:+12293529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATATAAATAAATAAATG+GGG + chr5_4:12293359-12293378 None:intergenic 10.0%
!! GTTTCATATAAATAAATAAA+TGG + chr5_4:12293361-12293380 None:intergenic 10.0%
!! TTCATATAAATAAATAAATG+GGG + chr5_4:12293359-12293378 None:intergenic 10.0%
!! GTTTCATATAAATAAATAAA+TGG + chr5_4:12293361-12293380 None:intergenic 10.0%
!! AAATATACAAATATGATTTG+TGG - chr5_4:12291925-12291944 Msa0838070:CDS 15.0%
!! TTTGCTAATGTTAATTAAAA+AGG + chr5_4:12292077-12292096 None:intergenic 15.0%
!! TATAAAAATTTCAATTACGT+GGG - chr5_4:12292730-12292749 Msa0838070:intron 15.0%
!! AAATATACAAATATGATTTG+TGG - chr5_4:12291925-12291944 Msa0838070:CDS 15.0%
!! TTTGCTAATGTTAATTAAAA+AGG + chr5_4:12292077-12292096 None:intergenic 15.0%
!! TATAAAAATTTCAATTACGT+GGG - chr5_4:12292730-12292749 Msa0838070:intron 15.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_4:12291569-12291588 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_4:12291570-12291589 None:intergenic 20.0%
!! TTAATTAACATTAGCAAAGA+TGG - chr5_4:12292079-12292098 Msa0838070:intron 20.0%
!! CTTAAAAATTTGAATGATGT+GGG - chr5_4:12292384-12292403 Msa0838070:intron 20.0%
!! GTATAAAAATTTCAATTACG+TGG - chr5_4:12292729-12292748 Msa0838070:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_4:12292863-12292882 Msa0838070:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_4:12292864-12292883 Msa0838070:intron 20.0%
!!! AAATAGTCTTATCAGTTAAT+CGG + chr5_4:12293239-12293258 None:intergenic 20.0%
!! AAATAAATAAATGGGGAAAA+AGG + chr5_4:12293352-12293371 None:intergenic 20.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_4:12291569-12291588 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_4:12291570-12291589 None:intergenic 20.0%
!! TTAATTAACATTAGCAAAGA+TGG - chr5_4:12292079-12292098 Msa0838070:intron 20.0%
!! CTTAAAAATTTGAATGATGT+GGG - chr5_4:12292384-12292403 Msa0838070:intron 20.0%
!! GTATAAAAATTTCAATTACG+TGG - chr5_4:12292729-12292748 Msa0838070:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_4:12292863-12292882 Msa0838070:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_4:12292864-12292883 Msa0838070:intron 20.0%
!!! AAATAGTCTTATCAGTTAAT+CGG + chr5_4:12293239-12293258 None:intergenic 20.0%
!! AAATAAATAAATGGGGAAAA+AGG + chr5_4:12293352-12293371 None:intergenic 20.0%
! TATGTTAATATACTTCGTAG+TGG - chr5_4:12291967-12291986 Msa0838070:intron 25.0%
! ACAACACAGTAATTTCTAAA+TGG + chr5_4:12292005-12292024 None:intergenic 25.0%
!! CTTTTTGATAGAACACTATA+AGG - chr5_4:12292300-12292319 Msa0838070:intron 25.0%
! GCTTAAAAATTTGAATGATG+TGG - chr5_4:12292383-12292402 Msa0838070:intron 25.0%
! TATAAACGCAGTTACATTTA+TGG + chr5_4:12292578-12292597 None:intergenic 25.0%
!! TGTAAAACTTTTTGTACTTC+TGG - chr5_4:12292630-12292649 Msa0838070:intron 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_4:12293015-12293034 Msa0838070:intron 25.0%
! ACTATTTGAAGAGATTCTTA+CGG - chr5_4:12293252-12293271 Msa0838070:CDS 25.0%
!!! TTGTTTTTTCCAAACTACTT+GGG - chr5_4:12293315-12293334 Msa0838070:CDS 25.0%
! ATGAAACTATTACATGACAA+TGG - chr5_4:12293374-12293393 Msa0838070:CDS 25.0%
! TATGTTAATATACTTCGTAG+TGG - chr5_4:12291967-12291986 Msa0838070:intron 25.0%
! ACAACACAGTAATTTCTAAA+TGG + chr5_4:12292005-12292024 None:intergenic 25.0%
!! CTTTTTGATAGAACACTATA+AGG - chr5_4:12292300-12292319 Msa0838070:intron 25.0%
! GCTTAAAAATTTGAATGATG+TGG - chr5_4:12292383-12292402 Msa0838070:intron 25.0%
! TATAAACGCAGTTACATTTA+TGG + chr5_4:12292578-12292597 None:intergenic 25.0%
!! TGTAAAACTTTTTGTACTTC+TGG - chr5_4:12292630-12292649 Msa0838070:intron 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_4:12293015-12293034 Msa0838070:intron 25.0%
! ACTATTTGAAGAGATTCTTA+CGG - chr5_4:12293252-12293271 Msa0838070:CDS 25.0%
!!! TTGTTTTTTCCAAACTACTT+GGG - chr5_4:12293315-12293334 Msa0838070:CDS 25.0%
! ATGAAACTATTACATGACAA+TGG - chr5_4:12293374-12293393 Msa0838070:CDS 25.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_4:12291300-12291319 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_4:12291563-12291582 None:intergenic 30.0%
ACAGGACAGTTTATTTATTG+TGG - chr5_4:12291621-12291640 Msa0838070:exon 30.0%
CAGGACAGTTTATTTATTGT+GGG - chr5_4:12291622-12291641 Msa0838070:exon 30.0%
! TTGGAAATGTTTTGCCATTA+AGG - chr5_4:12291664-12291683 Msa0838070:CDS 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_4:12291711-12291730 Msa0838070:CDS 30.0%
AAAATGTGGATTCTGTAGTA+AGG - chr5_4:12292175-12292194 Msa0838070:intron 30.0%
ACCTAGAAAAACTAGTAAGA+AGG - chr5_4:12292245-12292264 Msa0838070:intron 30.0%
!!! TCCTTCTTACTAGTTTTTCT+AGG + chr5_4:12292249-12292268 None:intergenic 30.0%
GTTAATCAATCATAACTGTC+CGG - chr5_4:12292535-12292554 Msa0838070:intron 30.0%
AAAATTTCAATTACGTGGGA+TGG - chr5_4:12292734-12292753 Msa0838070:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_4:12293014-12293033 Msa0838070:intron 30.0%
CAAGTAGTTTGGAAAAAACA+AGG + chr5_4:12293316-12293335 None:intergenic 30.0%
!!! CTTGTTTTTTCCAAACTACT+TGG - chr5_4:12293314-12293333 Msa0838070:CDS 30.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_4:12291300-12291319 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_4:12291563-12291582 None:intergenic 30.0%
ACAGGACAGTTTATTTATTG+TGG - chr5_4:12291621-12291640 Msa0838070:exon 30.0%
CAGGACAGTTTATTTATTGT+GGG - chr5_4:12291622-12291641 Msa0838070:exon 30.0%
! TTGGAAATGTTTTGCCATTA+AGG - chr5_4:12291664-12291683 Msa0838070:CDS 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_4:12291711-12291730 Msa0838070:CDS 30.0%
AAAATGTGGATTCTGTAGTA+AGG - chr5_4:12292175-12292194 Msa0838070:intron 30.0%
ACCTAGAAAAACTAGTAAGA+AGG - chr5_4:12292245-12292264 Msa0838070:intron 30.0%
!!! TCCTTCTTACTAGTTTTTCT+AGG + chr5_4:12292249-12292268 None:intergenic 30.0%
GTTAATCAATCATAACTGTC+CGG - chr5_4:12292535-12292554 Msa0838070:intron 30.0%
AAAATTTCAATTACGTGGGA+TGG - chr5_4:12292734-12292753 Msa0838070:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_4:12293014-12293033 Msa0838070:intron 30.0%
CAAGTAGTTTGGAAAAAACA+AGG + chr5_4:12293316-12293335 None:intergenic 30.0%
!!! CTTGTTTTTTCCAAACTACT+TGG - chr5_4:12293314-12293333 Msa0838070:CDS 30.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_4:12291301-12291320 None:intergenic 35.0%
AAAAAAGCTACTCTCGTTGT+TGG - chr5_4:12291645-12291664 Msa0838070:CDS 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_4:12291790-12291809 Msa0838070:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_4:12291795-12291814 None:intergenic 35.0%
CAAAGATGGAGATGTAACAT+GGG - chr5_4:12292093-12292112 Msa0838070:intron 35.0%
GGATAGTAAGAACTAGACTT+TGG - chr5_4:12292136-12292155 Msa0838070:intron 35.0%
TAGTAAGAACTAGACTTTGG+TGG - chr5_4:12292139-12292158 Msa0838070:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr5_4:12292191-12292210 Msa0838070:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr5_4:12292266-12292285 Msa0838070:intron 35.0%
CACATACACGAAAGTTTATG+CGG - chr5_4:12292513-12292532 Msa0838070:intron 35.0%
GTGCATGGAAATTATACTCT+TGG - chr5_4:12292652-12292671 Msa0838070:intron 35.0%
!!! GGTGTTCATGTTTTTTTGAC+AGG - chr5_4:12292885-12292904 Msa0838070:intron 35.0%
CTCAAAATACCCAAGTAGTT+TGG + chr5_4:12293327-12293346 None:intergenic 35.0%
TTCATAGTTTACCTTCCTTC+TGG - chr5_4:12293425-12293444 Msa0838070:CDS 35.0%
TCATAGTTTACCTTCCTTCT+GGG - chr5_4:12293426-12293445 Msa0838070:CDS 35.0%
GTTGCGCAATTTATTTGTCT+AGG - chr5_4:12293507-12293526 Msa0838070:exon 35.0%
CGCAATTTATTTGTCTAGGT+TGG - chr5_4:12293511-12293530 Msa0838070:five_prime_UTR 35.0%
GGTTTCTTAATTGTAAGTGC+AGG - chr5_4:12293532-12293551 Msa0838070:five_prime_UTR 35.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_4:12291301-12291320 None:intergenic 35.0%
AAAAAAGCTACTCTCGTTGT+TGG - chr5_4:12291645-12291664 Msa0838070:CDS 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_4:12291790-12291809 Msa0838070:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_4:12291795-12291814 None:intergenic 35.0%
CAAAGATGGAGATGTAACAT+GGG - chr5_4:12292093-12292112 Msa0838070:intron 35.0%
GGATAGTAAGAACTAGACTT+TGG - chr5_4:12292136-12292155 Msa0838070:intron 35.0%
TAGTAAGAACTAGACTTTGG+TGG - chr5_4:12292139-12292158 Msa0838070:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr5_4:12292191-12292210 Msa0838070:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr5_4:12292266-12292285 Msa0838070:intron 35.0%
CACATACACGAAAGTTTATG+CGG - chr5_4:12292513-12292532 Msa0838070:intron 35.0%
GTGCATGGAAATTATACTCT+TGG - chr5_4:12292652-12292671 Msa0838070:intron 35.0%
!!! GGTGTTCATGTTTTTTTGAC+AGG - chr5_4:12292885-12292904 Msa0838070:intron 35.0%
CTCAAAATACCCAAGTAGTT+TGG + chr5_4:12293327-12293346 None:intergenic 35.0%
TTCATAGTTTACCTTCCTTC+TGG - chr5_4:12293425-12293444 Msa0838070:CDS 35.0%
TCATAGTTTACCTTCCTTCT+GGG - chr5_4:12293426-12293445 Msa0838070:CDS 35.0%
GTTGCGCAATTTATTTGTCT+AGG - chr5_4:12293507-12293526 Msa0838070:exon 35.0%
CGCAATTTATTTGTCTAGGT+TGG - chr5_4:12293511-12293530 Msa0838070:five_prime_UTR 35.0%
GGTTTCTTAATTGTAAGTGC+AGG - chr5_4:12293532-12293551 Msa0838070:five_prime_UTR 35.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_4:12291465-12291484 Msa0838070:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_4:12291477-12291496 Msa0838070:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_4:12291494-12291513 None:intergenic 40.0%
CCTTCAGGAATCATCCTTAA+TGG + chr5_4:12291681-12291700 None:intergenic 40.0%
CCATTAAGGATGATTCCTGA+AGG - chr5_4:12291678-12291697 Msa0838070:CDS 40.0%
GCAAAGATGGAGATGTAACA+TGG - chr5_4:12292092-12292111 Msa0838070:intron 40.0%
! AGAACTAGACTTTGGTGGTT+TGG - chr5_4:12292144-12292163 Msa0838070:intron 40.0%
! GAACTAGACTTTGGTGGTTT+GGG - chr5_4:12292145-12292164 Msa0838070:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr5_4:12292194-12292213 Msa0838070:intron 40.0%
AGGAGAGTAGATTAGATGGA+GGG - chr5_4:12292195-12292214 Msa0838070:intron 40.0%
GAAGTCAAATCACTTGAGGT+AGG - chr5_4:12292217-12292236 Msa0838070:intron 40.0%
! CTTTTTGTACTTCTGGTGCA+TGG - chr5_4:12292637-12292656 Msa0838070:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_4:12292903-12292922 Msa0838070:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_4:12292988-12293007 Msa0838070:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_4:12293023-12293042 Msa0838070:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_4:12293027-12293046 None:intergenic 40.0%
TTAGGGTGAAGAGGAATTGT+TGG - chr5_4:12293032-12293051 Msa0838070:intron 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_4:12293079-12293098 Msa0838070:CDS 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_4:12293117-12293136 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_4:12293122-12293141 Msa0838070:CDS 40.0%
AGAACTAGATGAAACCCAGA+AGG + chr5_4:12293443-12293462 None:intergenic 40.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_4:12291465-12291484 Msa0838070:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_4:12291477-12291496 Msa0838070:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_4:12291494-12291513 None:intergenic 40.0%
CCTTCAGGAATCATCCTTAA+TGG + chr5_4:12291681-12291700 None:intergenic 40.0%
CCATTAAGGATGATTCCTGA+AGG - chr5_4:12291678-12291697 Msa0838070:CDS 40.0%
GCAAAGATGGAGATGTAACA+TGG - chr5_4:12292092-12292111 Msa0838070:intron 40.0%
! AGAACTAGACTTTGGTGGTT+TGG - chr5_4:12292144-12292163 Msa0838070:intron 40.0%
! GAACTAGACTTTGGTGGTTT+GGG - chr5_4:12292145-12292164 Msa0838070:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr5_4:12292194-12292213 Msa0838070:intron 40.0%
AGGAGAGTAGATTAGATGGA+GGG - chr5_4:12292195-12292214 Msa0838070:intron 40.0%
GAAGTCAAATCACTTGAGGT+AGG - chr5_4:12292217-12292236 Msa0838070:intron 40.0%
! CTTTTTGTACTTCTGGTGCA+TGG - chr5_4:12292637-12292656 Msa0838070:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_4:12292903-12292922 Msa0838070:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_4:12292988-12293007 Msa0838070:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_4:12293023-12293042 Msa0838070:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_4:12293027-12293046 None:intergenic 40.0%
TTAGGGTGAAGAGGAATTGT+TGG - chr5_4:12293032-12293051 Msa0838070:intron 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_4:12293079-12293098 Msa0838070:CDS 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_4:12293117-12293136 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_4:12293122-12293141 Msa0838070:CDS 40.0%
AGAACTAGATGAAACCCAGA+AGG + chr5_4:12293443-12293462 None:intergenic 40.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_4:12291316-12291335 Msa0838070:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_4:12291338-12291357 Msa0838070:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_4:12291345-12291364 Msa0838070:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_4:12291381-12291400 Msa0838070:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_4:12291461-12291480 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_4:12291507-12291526 Msa0838070:three_prime_UTR 45.0%
AAGGATGATTCCTGAAGGTG+CGG - chr5_4:12291683-12291702 Msa0838070:CDS 45.0%
TTACAGATAACCGCACCTTC+AGG + chr5_4:12291696-12291715 None:intergenic 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_4:12291720-12291739 Msa0838070:CDS 45.0%
GAGAGAGAGAACAAACCTAG+AGG + chr5_4:12291808-12291827 None:intergenic 45.0%
GAGATGTAACATGGGATGTG+TGG - chr5_4:12292101-12292120 Msa0838070:intron 45.0%
GGATGTGTGGAAAGACTAGA+CGG - chr5_4:12292114-12292133 Msa0838070:intron 45.0%
GATGTGTGGAAAGACTAGAC+GGG - chr5_4:12292115-12292134 Msa0838070:intron 45.0%
GTTTGGGCATGTGGAAAATG+TGG - chr5_4:12292161-12292180 Msa0838070:intron 45.0%
GAGGGAAGTCAAATCACTTG+AGG - chr5_4:12292213-12292232 Msa0838070:intron 45.0%
CTTATCCCACTATGTGGGAT+CGG + chr5_4:12292343-12292362 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG + chr5_4:12292348-12292367 None:intergenic 45.0%
GGTCAAGCAACTTGTATGAC+CGG + chr5_4:12292557-12292576 None:intergenic 45.0%
TCAATTACGTGGGATGGTGA+TGG - chr5_4:12292740-12292759 Msa0838070:intron 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_4:12292902-12292921 Msa0838070:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_4:12292904-12292923 Msa0838070:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_4:12292920-12292939 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_4:12292944-12292963 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_4:12292944-12292963 Msa0838070:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_4:12292945-12292964 Msa0838070:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_4:12293001-12293020 None:intergenic 45.0%
! GAAGAGGAATTGTTGGCCTA+AGG - chr5_4:12293039-12293058 Msa0838070:intron 45.0%
! AATTGTTGGCCTAAGGTTCG+TGG - chr5_4:12293046-12293065 Msa0838070:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_4:12293114-12293133 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_4:12293175-12293194 Msa0838070:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_4:12293186-12293205 Msa0838070:CDS 45.0%
CTAGATGAAACCCAGAAGGA+AGG + chr5_4:12293439-12293458 None:intergenic 45.0%
TTCATACCTTGTCCAGGTAG+TGG - chr5_4:12293556-12293575 Msa0838070:five_prime_UTR 45.0%
AAACAACCACTACCTGGACA+AGG + chr5_4:12293565-12293584 None:intergenic 45.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_4:12291316-12291335 Msa0838070:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_4:12291338-12291357 Msa0838070:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_4:12291345-12291364 Msa0838070:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_4:12291381-12291400 Msa0838070:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_4:12291461-12291480 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_4:12291507-12291526 Msa0838070:three_prime_UTR 45.0%
AAGGATGATTCCTGAAGGTG+CGG - chr5_4:12291683-12291702 Msa0838070:CDS 45.0%
TTACAGATAACCGCACCTTC+AGG + chr5_4:12291696-12291715 None:intergenic 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_4:12291720-12291739 Msa0838070:CDS 45.0%
GAGAGAGAGAACAAACCTAG+AGG + chr5_4:12291808-12291827 None:intergenic 45.0%
GAGATGTAACATGGGATGTG+TGG - chr5_4:12292101-12292120 Msa0838070:intron 45.0%
GGATGTGTGGAAAGACTAGA+CGG - chr5_4:12292114-12292133 Msa0838070:intron 45.0%
GATGTGTGGAAAGACTAGAC+GGG - chr5_4:12292115-12292134 Msa0838070:intron 45.0%
GTTTGGGCATGTGGAAAATG+TGG - chr5_4:12292161-12292180 Msa0838070:intron 45.0%
GAGGGAAGTCAAATCACTTG+AGG - chr5_4:12292213-12292232 Msa0838070:intron 45.0%
CTTATCCCACTATGTGGGAT+CGG + chr5_4:12292343-12292362 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG + chr5_4:12292348-12292367 None:intergenic 45.0%
GGTCAAGCAACTTGTATGAC+CGG + chr5_4:12292557-12292576 None:intergenic 45.0%
TCAATTACGTGGGATGGTGA+TGG - chr5_4:12292740-12292759 Msa0838070:intron 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_4:12292902-12292921 Msa0838070:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_4:12292904-12292923 Msa0838070:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_4:12292920-12292939 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_4:12292944-12292963 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_4:12292944-12292963 Msa0838070:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_4:12292945-12292964 Msa0838070:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_4:12293001-12293020 None:intergenic 45.0%
! GAAGAGGAATTGTTGGCCTA+AGG - chr5_4:12293039-12293058 Msa0838070:intron 45.0%
! AATTGTTGGCCTAAGGTTCG+TGG - chr5_4:12293046-12293065 Msa0838070:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_4:12293114-12293133 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_4:12293175-12293194 Msa0838070:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_4:12293186-12293205 Msa0838070:CDS 45.0%
CTAGATGAAACCCAGAAGGA+AGG + chr5_4:12293439-12293458 None:intergenic 45.0%
TTCATACCTTGTCCAGGTAG+TGG - chr5_4:12293556-12293575 Msa0838070:five_prime_UTR 45.0%
AAACAACCACTACCTGGACA+AGG + chr5_4:12293565-12293584 None:intergenic 45.0%
!! TTTCATATAAATAAATAAAT+GGG + chr5_4:12293360-12293379 None:intergenic 5.0%
!! TTTCATATAAATAAATAAAT+GGG + chr5_4:12293360-12293379 None:intergenic 5.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_4:12291354-12291373 Msa0838070:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_4:12291368-12291387 Msa0838070:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_4:12291415-12291434 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_4:12291453-12291472 Msa0838070:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_4:12291543-12291562 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_4:12291590-12291609 Msa0838070:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_4:12291591-12291610 Msa0838070:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_4:12291733-12291752 Msa0838070:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_4:12291741-12291760 Msa0838070:CDS 50.0%
! ACTTTGGTGGTTTGGGCATG+TGG - chr5_4:12292152-12292171 Msa0838070:intron 50.0%
ATGTAGCCGATCCCACATAG+TGG - chr5_4:12292334-12292353 Msa0838070:intron 50.0%
TGTAGCCGATCCCACATAGT+GGG - chr5_4:12292335-12292354 Msa0838070:intron 50.0%
! CGATCCCACATAGTGGGATA+AGG - chr5_4:12292341-12292360 Msa0838070:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG + chr5_4:12292349-12292368 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG - chr5_4:12292346-12292365 Msa0838070:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_4:12292956-12292975 Msa0838070:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_4:12292959-12292978 Msa0838070:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_4:12292992-12293011 Msa0838070:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_4:12293058-12293077 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_4:12293085-12293104 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_4:12293082-12293101 Msa0838070:CDS 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_4:12293085-12293104 Msa0838070:CDS 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_4:12293103-12293122 Msa0838070:CDS 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_4:12293160-12293179 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_4:12293185-12293204 Msa0838070:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_4:12293187-12293206 Msa0838070:CDS 50.0%
TTAATCGGCCTTAGCAGCAG+CGG + chr5_4:12293224-12293243 None:intergenic 50.0%
GCAGGATTCATACCTTGTCC+AGG - chr5_4:12293550-12293569 Msa0838070:five_prime_UTR 50.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_4:12291354-12291373 Msa0838070:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_4:12291368-12291387 Msa0838070:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_4:12291415-12291434 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_4:12291453-12291472 Msa0838070:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_4:12291543-12291562 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_4:12291590-12291609 Msa0838070:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_4:12291591-12291610 Msa0838070:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_4:12291733-12291752 Msa0838070:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_4:12291741-12291760 Msa0838070:CDS 50.0%
! ACTTTGGTGGTTTGGGCATG+TGG - chr5_4:12292152-12292171 Msa0838070:intron 50.0%
ATGTAGCCGATCCCACATAG+TGG - chr5_4:12292334-12292353 Msa0838070:intron 50.0%
TGTAGCCGATCCCACATAGT+GGG - chr5_4:12292335-12292354 Msa0838070:intron 50.0%
! CGATCCCACATAGTGGGATA+AGG - chr5_4:12292341-12292360 Msa0838070:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG + chr5_4:12292349-12292368 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG - chr5_4:12292346-12292365 Msa0838070:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_4:12292956-12292975 Msa0838070:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_4:12292959-12292978 Msa0838070:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_4:12292992-12293011 Msa0838070:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_4:12293058-12293077 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_4:12293085-12293104 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_4:12293082-12293101 Msa0838070:CDS 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_4:12293085-12293104 Msa0838070:CDS 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_4:12293103-12293122 Msa0838070:CDS 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_4:12293160-12293179 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_4:12293185-12293204 Msa0838070:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_4:12293187-12293206 Msa0838070:CDS 50.0%
TTAATCGGCCTTAGCAGCAG+CGG + chr5_4:12293224-12293243 None:intergenic 50.0%
GCAGGATTCATACCTTGTCC+AGG - chr5_4:12293550-12293569 Msa0838070:five_prime_UTR 50.0%
CTACGACTCTAACCACCGTG+CGG + chr5_4:12291334-12291353 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_4:12291353-12291372 Msa0838070:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_4:12291367-12291386 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_4:12291367-12291386 Msa0838070:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_4:12291387-12291406 Msa0838070:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_4:12291513-12291532 Msa0838070:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+AGG - chr5_4:12291603-12291622 Msa0838070:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_4:12292962-12292981 Msa0838070:intron 55.0%
TTGGCCTAAGGTTCGTGGTG+TGG - chr5_4:12293051-12293070 Msa0838070:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_4:12293097-12293116 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_4:12293147-12293166 Msa0838070:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_4:12293157-12293176 None:intergenic 55.0%
CTACGACTCTAACCACCGTG+CGG + chr5_4:12291334-12291353 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_4:12291353-12291372 Msa0838070:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_4:12291367-12291386 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_4:12291367-12291386 Msa0838070:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_4:12291387-12291406 Msa0838070:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_4:12291513-12291532 Msa0838070:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+AGG - chr5_4:12291603-12291622 Msa0838070:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_4:12292962-12292981 Msa0838070:intron 55.0%
TTGGCCTAAGGTTCGTGGTG+TGG - chr5_4:12293051-12293070 Msa0838070:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_4:12293097-12293116 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_4:12293147-12293166 Msa0838070:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_4:12293157-12293176 None:intergenic 55.0%
TCCATATCATCGCCGCACGG+TGG - chr5_4:12291319-12291338 Msa0838070:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_4:12291323-12291342 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_4:12291332-12291351 Msa0838070:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_4:12291358-12291377 Msa0838070:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_4:12291359-12291378 Msa0838070:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_4:12291423-12291442 Msa0838070:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_4:12291427-12291446 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_4:12291433-12291452 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_4:12291437-12291456 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_4:12291449-12291468 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_4:12291450-12291469 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_4:12291530-12291549 Msa0838070:three_prime_UTR 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_4:12293139-12293158 Msa0838070:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_4:12293151-12293170 Msa0838070:CDS 60.0%
AGCTGCTTCCGCTGCTGCTA+AGG - chr5_4:12293213-12293232 Msa0838070:CDS 60.0%
TCCATATCATCGCCGCACGG+TGG - chr5_4:12291319-12291338 Msa0838070:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_4:12291323-12291342 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_4:12291332-12291351 Msa0838070:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_4:12291358-12291377 Msa0838070:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_4:12291359-12291378 Msa0838070:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_4:12291423-12291442 Msa0838070:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_4:12291427-12291446 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_4:12291433-12291452 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_4:12291437-12291456 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_4:12291449-12291468 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_4:12291450-12291469 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_4:12291530-12291549 Msa0838070:three_prime_UTR 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_4:12293139-12293158 Msa0838070:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_4:12293151-12293170 Msa0838070:CDS 60.0%
AGCTGCTTCCGCTGCTGCTA+AGG - chr5_4:12293213-12293232 Msa0838070:CDS 60.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_4:12291428-12291447 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_4:12291434-12291453 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_4:12291527-12291546 None:intergenic 65.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_4:12291428-12291447 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_4:12291434-12291453 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_4:12291527-12291546 None:intergenic 65.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_4:12291528-12291547 None:intergenic 70.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_4:12291528-12291547 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12291293 12293589 12291293 ID=Msa0838070;Name=Msa0838070
chr5_4 mRNA 12291293 12293589 12291293 ID=Msa0838070-mRNA-1;Parent=Msa0838070;Name=Msa0838070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|1|1|2|346|258
chr5_4 exon 12291293 12291975 12291293 ID=Msa0838070-mRNA-1:exon:5460;Parent=Msa0838070-mRNA-1
chr5_4 exon 12293071 12293589 12293071 ID=Msa0838070-mRNA-1:exon:5459;Parent=Msa0838070-mRNA-1
chr5_4 five_prime_UTR 12293511 12293589 12293511 ID=Msa0838070-mRNA-1:five_prime_utr;Parent=Msa0838070-mRNA-1
chr5_4 CDS 12293071 12293510 12293071 ID=Msa0838070-mRNA-1:cds;Parent=Msa0838070-mRNA-1
chr5_4 CDS 12291639 12291975 12291639 ID=Msa0838070-mRNA-1:cds;Parent=Msa0838070-mRNA-1
chr5_4 three_prime_UTR 12291293 12291638 12291293 ID=Msa0838070-mRNA-1:three_prime_utr;Parent=Msa0838070-mRNA-1
Gene Sequence

>Msa0838070

ATGGGTAGGGTTATCAGGGCACAACGTAAAGGAGCAGGCTCCGTTTTCAAGTCCCACACCCACCATCGCAAAGGCCCAGCACGTTTCCGCAGTCTCGATTTCGGTGAAAGAAACGGTTACCTCAAAGGAGTAGTGAACGAAATCATTCACGACCCAGGTCGCGGTGCACCACTAGCTAAGGTCACATTCCGACACCCTTTTAGATATAAGAAACAGAAAGAGCTTTTCGTTGCTGCTGAGGGACTTTACACAGGACAGTTTATTTATTGTGGGAAAAAAGCTACTCTCGTTGTTGGAAATGTTTTGCCATTAAGGATGATTCCTGAAGGTGCGGTTATCTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACCTCTAGGATTAAGCTACCATCAGGGGCAAAGAAGATTGTTCCAAGTGAGTGCAGAGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCAATGCTTAAGGCTGGTAATGCTTACCACAAATTTAGGGTGAAGAGGAATTGTTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCATGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCTAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTTCCGCTGCTGCTAAGGCCGATTAA

Protein sequence

>Msa0838070

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIIHDPGRGAPLAKVTFRHPFRYKKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRMIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAAAKAD*