Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206240 | sp|Q9ZRS8|RL37A_PSEMZ | 97.802 | 91 | 2 | 0 | 1 | 91 | 1 | 91 | 6.61e-60 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206240 | M5WNW1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 37 | 128 | 8.10e-60 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1206240 | 0.834351 | 3.151453e-56 | -8.615850e-47 |
| Msa0027590 | Msa1206240 | 0.872810 | 2.388748e-67 | -8.615850e-47 |
| Msa0040220 | Msa1206240 | 0.808602 | 2.857795e-50 | -8.615850e-47 |
| Msa0044010 | Msa1206240 | 0.848001 | 8.092432e-60 | -8.615850e-47 |
| Msa0050860 | Msa1206240 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
| Msa0072570 | Msa1206240 | 0.828200 | 1.026045e-54 | -8.615850e-47 |
| Msa0075350 | Msa1206240 | 0.829986 | 3.786627e-55 | -8.615850e-47 |
| Msa0079590 | Msa1206240 | 0.825621 | 4.243006e-54 | -8.615850e-47 |
| Msa0094210 | Msa1206240 | 0.802175 | 6.356345e-49 | -8.615850e-47 |
| Msa0114570 | Msa1206240 | 0.806249 | 9.016330e-50 | -8.615850e-47 |
| Msa0605890 | Msa1206240 | 0.829603 | 4.693395e-55 | -8.615850e-47 |
| Msa0619230 | Msa1206240 | 0.820181 | 7.855448e-53 | -8.615850e-47 |
| Msa0622230 | Msa1206240 | 0.834049 | 3.752202e-56 | -8.615850e-47 |
| Msa0694400 | Msa1206240 | 0.824376 | 8.345895e-54 | -8.615850e-47 |
| Msa0704860 | Msa1206240 | 0.814380 | 1.586808e-51 | -8.615850e-47 |
| Msa0708630 | Msa1206240 | 0.804875 | 1.751110e-49 | -8.615850e-47 |
| Msa0748350 | Msa1206240 | 0.835384 | 1.731624e-56 | -8.615850e-47 |
| Msa0758420 | Msa1206240 | 0.810881 | 9.244519e-51 | -8.615850e-47 |
| Msa0788380 | Msa1206240 | 0.814335 | 1.623851e-51 | -8.615850e-47 |
| Msa0790450 | Msa1206240 | 0.814752 | 1.313104e-51 | -8.615850e-47 |
| Msa0834220 | Msa1206240 | 0.827729 | 1.332036e-54 | -8.615850e-47 |
| Msa0838070 | Msa1206240 | 0.815081 | 1.109473e-51 | -8.615850e-47 |
| Msa0132460 | Msa1206240 | 0.804603 | 1.995799e-49 | -8.615850e-47 |
| Msa0134580 | Msa1206240 | 0.801568 | 8.470083e-49 | -8.615850e-47 |
| Msa0166970 | Msa1206240 | 0.832287 | 1.030330e-55 | -8.615850e-47 |
| Msa0167860 | Msa1206240 | 0.826005 | 3.439576e-54 | -8.615850e-47 |
| Msa0168320 | Msa1206240 | 0.807952 | 3.931507e-50 | -8.615850e-47 |
| Msa0182050 | Msa1206240 | 0.808099 | 3.657590e-50 | -8.615850e-47 |
| Msa0183840 | Msa1206240 | 0.834902 | 2.291623e-56 | -8.615850e-47 |
| Msa0191450 | Msa1206240 | 0.813138 | 2.978633e-51 | -8.615850e-47 |
| Msa0191550 | Msa1206240 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0192300 | Msa1206240 | 0.830186 | 3.383729e-55 | -8.615850e-47 |
| Msa0194940 | Msa1206240 | 0.811709 | 6.113944e-51 | -8.615850e-47 |
| Msa0195030 | Msa1206240 | 0.820835 | 5.560802e-53 | -8.615850e-47 |
| Msa0235050 | Msa1206240 | 0.818359 | 2.043029e-52 | -8.615850e-47 |
| Msa0237180 | Msa1206240 | 0.806387 | 8.430153e-50 | -8.615850e-47 |
| Msa0371490 | Msa1206240 | 0.818933 | 1.513441e-52 | -8.615850e-47 |
| Msa0377370 | Msa1206240 | 0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0377520 | Msa1206240 | 0.828040 | 1.121232e-54 | -8.615850e-47 |
| Msa0426090 | Msa1206240 | 0.834366 | 3.124051e-56 | -8.615850e-47 |
| Msa0472480 | Msa1206240 | 0.840495 | 8.402691e-58 | -8.615850e-47 |
| Msa0475810 | Msa1206240 | 0.804175 | 2.451028e-49 | -8.615850e-47 |
| Msa0481520 | Msa1206240 | 0.819524 | 1.110346e-52 | -8.615850e-47 |
| Msa1041680 | Msa1206240 | 0.847762 | 9.419533e-60 | -8.615850e-47 |
| Msa1083370 | Msa1206240 | 0.812374 | 4.378958e-51 | -8.615850e-47 |
| Msa0239420 | Msa1206240 | 0.809807 | 1.576524e-50 | -8.615850e-47 |
| Msa0281330 | Msa1206240 | 0.826891 | 2.114520e-54 | -8.615850e-47 |
| Msa0281370 | Msa1206240 | 0.838040 | 3.641132e-57 | -8.615850e-47 |
| Msa0301250 | Msa1206240 | 0.833903 | 4.081843e-56 | -8.615850e-47 |
| Msa0313060 | Msa1206240 | 0.838148 | 3.414771e-57 | -8.615850e-47 |
| Msa0315430 | Msa1206240 | 0.842439 | 2.583594e-58 | -8.615850e-47 |
| Msa0315660 | Msa1206240 | 0.813826 | 2.102921e-51 | -8.615850e-47 |
| Msa1164150 | Msa1206240 | 0.815406 | 9.395245e-52 | -8.615850e-47 |
| Msa1165640 | Msa1206240 | 0.834549 | 2.810984e-56 | -8.615850e-47 |
| Msa1166570 | Msa1206240 | 0.846455 | 2.149482e-59 | -8.615850e-47 |
| Msa1186030 | Msa1206240 | 0.814843 | 1.252920e-51 | -8.615850e-47 |
| Msa1206240 | Msa1218170 | 0.835802 | 1.357216e-56 | -8.615850e-47 |
| Msa1206240 | Msa1235980 | 0.803007 | 4.280733e-49 | -8.615850e-47 |
| Msa1206240 | Msa1237040 | 0.833365 | 5.560333e-56 | -8.615850e-47 |
| Msa1206240 | Msa1258540 | 0.834647 | 2.655620e-56 | -8.615850e-47 |
| Msa1206240 | Msa1317390 | 0.815199 | 1.044971e-51 | -8.615850e-47 |
| Msa1206240 | Msa1351020 | 0.807214 | 5.639489e-50 | -8.615850e-47 |
| Msa1206240 | Msa1363910 | 0.821070 | 4.908279e-53 | -8.615850e-47 |
| Msa1206240 | Msa1385480 | 0.803395 | 3.558253e-49 | -8.615850e-47 |
| Msa1206240 | Msa1390760 | 0.820584 | 6.349461e-53 | -8.615850e-47 |
| Msa1206240 | Msa1449160 | 0.836655 | 8.240851e-57 | -8.615850e-47 |
| Msa1206240 | Msa1450560 | 0.819935 | 8.940967e-53 | -8.615850e-47 |
| Msa1206240 | Msa1453380 | 0.836534 | 8.846535e-57 | -8.615850e-47 |
| Msa1206240 | Msa1465700 | 0.819486 | 1.132601e-52 | -8.615850e-47 |
| Msa0511760 | Msa1206240 | 0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0550420 | Msa1206240 | 0.804515 | 2.082122e-49 | -8.615850e-47 |
| Msa0573550 | Msa1206240 | 0.842288 | 2.833222e-58 | -8.615850e-47 |
| Msa0582070 | Msa1206240 | 0.837612 | 4.690707e-57 | -8.615850e-47 |
| Msa0597240 | Msa1206240 | 0.825107 | 5.614120e-54 | -8.615850e-47 |
| Msa0861320 | Msa1206240 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
| Msa0929680 | Msa1206240 | 0.802943 | 4.413082e-49 | -8.615850e-47 |
| Msa0929700 | Msa1206240 | 0.852739 | 3.787632e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206240 | MtrunA17_Chr8g0336121 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1206240 | MtrunA17_Chr4g0055341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1206240 | MtrunA17_Chr4g0057431 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1206240 | MtrunA17_Chr8g0336341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206240 | AT3G10950.1 | 93.478 | 92 | 6 | 0 | 1 | 92 | 1 | 92 | 4.50e-59 | 176 |
| Msa1206240 | AT3G60245.1 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 8.73e-58 | 172 |
Find 39 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCGTATTCTATAACTTTA+AGG | 0.098185 | 8_1:-63209654 | None:intergenic |
| AAACGGTGAGATAGAGAATT+AGG | 0.190431 | 8_1:+63207918 | None:intergenic |
| ATGGTAGCATTATAATATTT+TGG | 0.275986 | 8_1:+63209631 | Msa1206240:three_prime_UTR |
| TAGTAGAACAATCATGCTTC+TGG | 0.312516 | 8_1:+63209754 | Msa1206240:intron |
| AGAGAAAGGCTGTAGGAATA+TGG | 0.316747 | 8_1:+63209124 | Msa1206240:CDS |
| AACGGTGAGATAGAGAATTA+GGG | 0.360740 | 8_1:+63207919 | None:intergenic |
| GAGAAAGGCTGTAGGAATAT+GGG | 0.416937 | 8_1:+63209125 | Msa1206240:CDS |
| GCTGGTATCGTTGGCAAATA+CGG | 0.433650 | 8_1:+63208210 | Msa1206240:CDS |
| ATGATATTAGGTACCCGTTA+TGG | 0.441488 | 8_1:+63208901 | Msa1206240:intron |
| GTACAACCAATGTAAATCTC+TGG | 0.443007 | 8_1:-63209399 | None:intergenic |
| CTGCAAGTGCCGTGACTGTT+CGG | 0.445396 | 8_1:+63209284 | Msa1206240:CDS |
| TGACTGTTCGGAGCACCATC+AGG | 0.472923 | 8_1:+63209296 | Msa1206240:CDS |
| ACGCAAACTAGCACCATAAC+GGG | 0.476774 | 8_1:-63208914 | None:intergenic |
| TTGTTCCCTCAACCTCCTGA+TGG | 0.500191 | 8_1:-63209311 | None:intergenic |
| GGAGCACCATCAGGAGGTTG+AGG | 0.503709 | 8_1:+63209305 | Msa1206240:CDS |
| ATCGAAGGAGGTGTGAGCTA+TGG | 0.513252 | 8_1:-63207976 | None:intergenic |
| TGGAAGTGGCAGCGGTGGAA+TGG | 0.513444 | 8_1:-63207956 | None:intergenic |
| AGGTGTTTGGGGACAATGAA+AGG | 0.523148 | 8_1:-63209515 | None:intergenic |
| TACGCAAACTAGCACCATAA+CGG | 0.535734 | 8_1:-63208915 | None:intergenic |
| AGAAAGGCTGTAGGAATATG+GGG | 0.537082 | 8_1:+63209126 | Msa1206240:CDS |
| ACTAAGAGAACTAAGAAGGC+TGG | 0.546098 | 8_1:+63208192 | Msa1206240:CDS |
| GAGCACCATCAGGAGGTTGA+GGG | 0.548544 | 8_1:+63209306 | Msa1206240:CDS |
| ACTAAGAAGGCTGGTATCGT+TGG | 0.554051 | 8_1:+63208201 | Msa1206240:CDS |
| TTGTGATTATGTCGAGGCCA+TGG | 0.565752 | 8_1:+63209612 | Msa1206240:three_prime_UTR |
| GCAGACTAAGAGAACTAAGA+AGG | 0.566891 | 8_1:+63208188 | Msa1206240:intron |
| GTGAGCTATGGAAGTGGCAG+CGG | 0.577083 | 8_1:-63207964 | None:intergenic |
| GATTGCGGTAAAGTGAAAGC+AGG | 0.587249 | 8_1:+63209156 | Msa1206240:CDS |
| AGCTATGGAAGTGGCAGCGG+TGG | 0.595651 | 8_1:-63207961 | None:intergenic |
| TGTAGGAATATGGGGATGCA+AGG | 0.599232 | 8_1:+63209134 | Msa1206240:CDS |
| TAAAGTTATAGAATACGCAA+AGG | 0.599704 | 8_1:+63209657 | Msa1206240:three_prime_UTR |
| AAAATATTATAATGCTACCA+TGG | 0.603906 | 8_1:-63209629 | None:intergenic |
| GATGGTGCTCCGAACAGTCA+CGG | 0.619064 | 8_1:-63209293 | None:intergenic |
| GGAGGTGTGAGCTATGGAAG+TGG | 0.621583 | 8_1:-63207970 | None:intergenic |
| GCAGTATGCTGTGAAGAGAA+AGG | 0.632531 | 8_1:+63209110 | Msa1206240:intron |
| TGCGGTAAAGTGAAAGCAGG+CGG | 0.647382 | 8_1:+63209159 | Msa1206240:CDS |
| ATATGGGGATGCAAGGATTG+CGG | 0.650089 | 8_1:+63209141 | Msa1206240:CDS |
| GCTGTGAAGAGAAAGGCTGT+AGG | 0.663437 | 8_1:+63209117 | Msa1206240:CDS |
| ACAATGAAAGGAAACAACAA+AGG | 0.672606 | 8_1:-63209503 | None:intergenic |
| CTGTTCGGAGCACCATCAGG+AGG | 0.673364 | 8_1:+63209299 | Msa1206240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTAAATGTTTTAAATA+TGG | + | chr8_1:63208309-63208328 | Msa1206240:intron | 10.0% |
| !!! | AATAAATAATATTTTATGCA+AGG | + | chr8_1:63208583-63208602 | Msa1206240:intron | 10.0% |
| !!! | ATTATATTTTATGTAAAACA+AGG | - | chr8_1:63208814-63208833 | None:intergenic | 10.0% |
| !!! | TGATTTAAATGTTTTAAATA+TGG | + | chr8_1:63208309-63208328 | Msa1206240:intron | 10.0% |
| !!! | AATAAATAATATTTTATGCA+AGG | + | chr8_1:63208583-63208602 | Msa1206240:intron | 10.0% |
| !!! | ATTATATTTTATGTAAAACA+AGG | - | chr8_1:63208814-63208833 | None:intergenic | 10.0% |
| !! | TATACATAGATATATGTATA+TGG | + | chr8_1:63208468-63208487 | Msa1206240:intron | 15.0% |
| !!! | TTTTATTTTTCAAATCTGAA+AGG | + | chr8_1:63209224-63209243 | Msa1206240:intron | 15.0% |
| !! | TATACATAGATATATGTATA+TGG | + | chr8_1:63208468-63208487 | Msa1206240:intron | 15.0% |
| !!! | TTTTATTTTTCAAATCTGAA+AGG | + | chr8_1:63209224-63209243 | Msa1206240:intron | 15.0% |
| !!! | AAATATGGTTTTGTTTATGA+TGG | + | chr8_1:63208324-63208343 | Msa1206240:intron | 20.0% |
| !! | ACAAATACAATTCATGAATT+GGG | - | chr8_1:63208780-63208799 | None:intergenic | 20.0% |
| !! | TACAAATACAATTCATGAAT+TGG | - | chr8_1:63208781-63208800 | None:intergenic | 20.0% |
| !! | TTTATGAGAAGTTAATTCAT+TGG | + | chr8_1:63208869-63208888 | Msa1206240:intron | 20.0% |
| !!! | TGGTTTTATTGTATGATATT+AGG | + | chr8_1:63208889-63208908 | Msa1206240:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_1:63208973-63208992 | Msa1206240:CDS | 20.0% |
| !!! | ATCTAAGTATTTAGTTTAGT+TGG | + | chr8_1:63209037-63209056 | Msa1206240:intron | 20.0% |
| !! | GAAAAATAAAAGATTGAGAA+AGG | - | chr8_1:63209215-63209234 | None:intergenic | 20.0% |
| !! | AAAATATTATAATGCTACCA+TGG | - | chr8_1:63209632-63209651 | None:intergenic | 20.0% |
| !!! | ATGGTAGCATTATAATATTT+TGG | + | chr8_1:63209631-63209650 | Msa1206240:three_prime_UTR | 20.0% |
| !!! | AGGTTTTACATTTATTTTGA+AGG | + | chr8_1:63209677-63209696 | Msa1206240:three_prime_UTR | 20.0% |
| !!! | AAATATGGTTTTGTTTATGA+TGG | + | chr8_1:63208324-63208343 | Msa1206240:intron | 20.0% |
| !! | ACAAATACAATTCATGAATT+GGG | - | chr8_1:63208780-63208799 | None:intergenic | 20.0% |
| !! | TACAAATACAATTCATGAAT+TGG | - | chr8_1:63208781-63208800 | None:intergenic | 20.0% |
| !! | TTTATGAGAAGTTAATTCAT+TGG | + | chr8_1:63208869-63208888 | Msa1206240:intron | 20.0% |
| !!! | TGGTTTTATTGTATGATATT+AGG | + | chr8_1:63208889-63208908 | Msa1206240:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_1:63208973-63208992 | Msa1206240:CDS | 20.0% |
| !!! | ATCTAAGTATTTAGTTTAGT+TGG | + | chr8_1:63209037-63209056 | Msa1206240:intron | 20.0% |
| !! | GAAAAATAAAAGATTGAGAA+AGG | - | chr8_1:63209215-63209234 | None:intergenic | 20.0% |
| !! | AAAATATTATAATGCTACCA+TGG | - | chr8_1:63209632-63209651 | None:intergenic | 20.0% |
| !!! | ATGGTAGCATTATAATATTT+TGG | + | chr8_1:63209631-63209650 | Msa1206240:three_prime_UTR | 20.0% |
| !!! | AGGTTTTACATTTATTTTGA+AGG | + | chr8_1:63209677-63209696 | Msa1206240:three_prime_UTR | 20.0% |
| !! | TTGAAAGAGAAGTTTAGAAT+TGG | - | chr8_1:63208054-63208073 | None:intergenic | 25.0% |
| ! | ACACAGAATTTGTAAGATTT+CGG | - | chr8_1:63208241-63208260 | None:intergenic | 25.0% |
| ! | AAAATAAACCAATCCAAACT+AGG | - | chr8_1:63208537-63208556 | None:intergenic | 25.0% |
| !!! | TTGGTTTATTTTTGAGTTTG+TGG | + | chr8_1:63208545-63208564 | Msa1206240:intron | 25.0% |
| ! | GATTTATTTGTAACTCTTCA+AGG | + | chr8_1:63208837-63208856 | Msa1206240:intron | 25.0% |
| ! | ATGATATACAACATTACACA+AGG | - | chr8_1:63209008-63209027 | None:intergenic | 25.0% |
| ! | AAAAGATTGAGAAAGGAATA+AGG | - | chr8_1:63209208-63209227 | None:intergenic | 25.0% |
| ! | ATCAACAAAAGAAAAACACT+TGG | - | chr8_1:63209578-63209597 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGATTATGTCG+AGG | + | chr8_1:63209606-63209625 | Msa1206240:three_prime_UTR | 25.0% |
| ! | TTGCGTATTCTATAACTTTA+AGG | - | chr8_1:63209657-63209676 | None:intergenic | 25.0% |
| ! | TAAAGTTATAGAATACGCAA+AGG | + | chr8_1:63209657-63209676 | Msa1206240:three_prime_UTR | 25.0% |
| !! | TTGAAAGAGAAGTTTAGAAT+TGG | - | chr8_1:63208054-63208073 | None:intergenic | 25.0% |
| ! | ACACAGAATTTGTAAGATTT+CGG | - | chr8_1:63208241-63208260 | None:intergenic | 25.0% |
| ! | AAAATAAACCAATCCAAACT+AGG | - | chr8_1:63208537-63208556 | None:intergenic | 25.0% |
| !!! | TTGGTTTATTTTTGAGTTTG+TGG | + | chr8_1:63208545-63208564 | Msa1206240:intron | 25.0% |
| ! | GATTTATTTGTAACTCTTCA+AGG | + | chr8_1:63208837-63208856 | Msa1206240:intron | 25.0% |
| ! | ATGATATACAACATTACACA+AGG | - | chr8_1:63209008-63209027 | None:intergenic | 25.0% |
| ! | AAAAGATTGAGAAAGGAATA+AGG | - | chr8_1:63209208-63209227 | None:intergenic | 25.0% |
| ! | ATCAACAAAAGAAAAACACT+TGG | - | chr8_1:63209578-63209597 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGATTATGTCG+AGG | + | chr8_1:63209606-63209625 | Msa1206240:three_prime_UTR | 25.0% |
| ! | TTGCGTATTCTATAACTTTA+AGG | - | chr8_1:63209657-63209676 | None:intergenic | 25.0% |
| ! | TAAAGTTATAGAATACGCAA+AGG | + | chr8_1:63209657-63209676 | Msa1206240:three_prime_UTR | 25.0% |
| ! | ATTTTTACAAAGATCGAAGG+AGG | - | chr8_1:63207991-63208010 | None:intergenic | 30.0% |
| TCCTTCGATCTTTGTAAAAA+TGG | + | chr8_1:63207990-63208009 | Msa1206240:exon | 30.0% | |
| !! | ACCATTTTTACAAAGATCGA+AGG | - | chr8_1:63207994-63208013 | None:intergenic | 30.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_1:63208042-63208061 | None:intergenic | 30.0% |
| ! | AGAGAAGTTTAGAATTGGAT+TGG | - | chr8_1:63208049-63208068 | None:intergenic | 30.0% |
| TTACAAATCTGAGTGAACAA+AGG | - | chr8_1:63208097-63208116 | None:intergenic | 30.0% | |
| !!! | TAAGCTATTTTTCATAAGCC+AGG | + | chr8_1:63208689-63208708 | Msa1206240:intron | 30.0% |
| ACCTAAAATGTAACTACCTA+GGG | - | chr8_1:63208715-63208734 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGGTTTGATGTTT+TGG | + | chr8_1:63208727-63208746 | Msa1206240:intron | 30.0% |
| ! | TTTAGGTGGTTTGATGTTTT+GGG | + | chr8_1:63208728-63208747 | Msa1206240:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_1:63208978-63208997 | Msa1206240:CDS | 30.0% |
| ATAATGAGAACAAAGTCATG+AGG | - | chr8_1:63209254-63209273 | None:intergenic | 30.0% | |
| ! | GATTTTCCAGAGATTTACAT+TGG | + | chr8_1:63209393-63209412 | Msa1206240:three_prime_UTR | 30.0% |
| ACAATGAAAGGAAACAACAA+AGG | - | chr8_1:63209506-63209525 | None:intergenic | 30.0% | |
| TCAAAAACTATCAGGTGTTT+GGG | - | chr8_1:63209530-63209549 | None:intergenic | 30.0% | |
| ATCAAAAACTATCAGGTGTT+TGG | - | chr8_1:63209531-63209550 | None:intergenic | 30.0% | |
| AGTATTACTGCTTAGTAGAA+CGG | + | chr8_1:63209705-63209724 | Msa1206240:intron | 30.0% | |
| ! | ATTTTTACAAAGATCGAAGG+AGG | - | chr8_1:63207991-63208010 | None:intergenic | 30.0% |
| TCCTTCGATCTTTGTAAAAA+TGG | + | chr8_1:63207990-63208009 | Msa1206240:exon | 30.0% | |
| !! | ACCATTTTTACAAAGATCGA+AGG | - | chr8_1:63207994-63208013 | None:intergenic | 30.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_1:63208042-63208061 | None:intergenic | 30.0% |
| ! | AGAGAAGTTTAGAATTGGAT+TGG | - | chr8_1:63208049-63208068 | None:intergenic | 30.0% |
| TTACAAATCTGAGTGAACAA+AGG | - | chr8_1:63208097-63208116 | None:intergenic | 30.0% | |
| !!! | TAAGCTATTTTTCATAAGCC+AGG | + | chr8_1:63208689-63208708 | Msa1206240:intron | 30.0% |
| ACCTAAAATGTAACTACCTA+GGG | - | chr8_1:63208715-63208734 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGGTTTGATGTTT+TGG | + | chr8_1:63208727-63208746 | Msa1206240:intron | 30.0% |
| ! | TTTAGGTGGTTTGATGTTTT+GGG | + | chr8_1:63208728-63208747 | Msa1206240:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_1:63208978-63208997 | Msa1206240:CDS | 30.0% |
| ATAATGAGAACAAAGTCATG+AGG | - | chr8_1:63209254-63209273 | None:intergenic | 30.0% | |
| ! | GATTTTCCAGAGATTTACAT+TGG | + | chr8_1:63209393-63209412 | Msa1206240:three_prime_UTR | 30.0% |
| ACAATGAAAGGAAACAACAA+AGG | - | chr8_1:63209506-63209525 | None:intergenic | 30.0% | |
| TCAAAAACTATCAGGTGTTT+GGG | - | chr8_1:63209530-63209549 | None:intergenic | 30.0% | |
| ATCAAAAACTATCAGGTGTT+TGG | - | chr8_1:63209531-63209550 | None:intergenic | 30.0% | |
| AGTATTACTGCTTAGTAGAA+CGG | + | chr8_1:63209705-63209724 | Msa1206240:intron | 30.0% | |
| CACCTAAAATGTAACTACCT+AGG | - | chr8_1:63208716-63208735 | None:intergenic | 35.0% | |
| ! | CTAGGTAGTTACATTTTAGG+TGG | + | chr8_1:63208714-63208733 | Msa1206240:intron | 35.0% |
| ! | TTAGGTGGTTTGATGTTTTG+GGG | + | chr8_1:63208729-63208748 | Msa1206240:intron | 35.0% |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_1:63208901-63208920 | Msa1206240:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_1:63208933-63208952 | Msa1206240:CDS | 35.0% | |
| GGTAATTGATCATCAGAACT+CGG | - | chr8_1:63209086-63209105 | None:intergenic | 35.0% | |
| GTACAACCAATGTAAATCTC+TGG | - | chr8_1:63209402-63209421 | None:intergenic | 35.0% | |
| CAAAAACTATCAGGTGTTTG+GGG | - | chr8_1:63209529-63209548 | None:intergenic | 35.0% | |
| GACAAGCATCAAAAACTATC+AGG | - | chr8_1:63209538-63209557 | None:intergenic | 35.0% | |
| !!! | CTTAGTAGAACGGTTTTGAA+GGG | + | chr8_1:63209715-63209734 | Msa1206240:intron | 35.0% |
| TAGTAGAACAATCATGCTTC+TGG | + | chr8_1:63209754-63209773 | Msa1206240:intron | 35.0% | |
| CACCTAAAATGTAACTACCT+AGG | - | chr8_1:63208716-63208735 | None:intergenic | 35.0% | |
| ! | CTAGGTAGTTACATTTTAGG+TGG | + | chr8_1:63208714-63208733 | Msa1206240:intron | 35.0% |
| ! | TTAGGTGGTTTGATGTTTTG+GGG | + | chr8_1:63208729-63208748 | Msa1206240:intron | 35.0% |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_1:63208901-63208920 | Msa1206240:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_1:63208933-63208952 | Msa1206240:CDS | 35.0% | |
| GGTAATTGATCATCAGAACT+CGG | - | chr8_1:63209086-63209105 | None:intergenic | 35.0% | |
| GTACAACCAATGTAAATCTC+TGG | - | chr8_1:63209402-63209421 | None:intergenic | 35.0% | |
| CAAAAACTATCAGGTGTTTG+GGG | - | chr8_1:63209529-63209548 | None:intergenic | 35.0% | |
| GACAAGCATCAAAAACTATC+AGG | - | chr8_1:63209538-63209557 | None:intergenic | 35.0% | |
| !!! | CTTAGTAGAACGGTTTTGAA+GGG | + | chr8_1:63209715-63209734 | Msa1206240:intron | 35.0% |
| TAGTAGAACAATCATGCTTC+TGG | + | chr8_1:63209754-63209773 | Msa1206240:intron | 35.0% | |
| !! | TTGGATTGGATGATGGAGAA+GGG | - | chr8_1:63208035-63208054 | None:intergenic | 40.0% |
| !! | ATTGGATTGGATGATGGAGA+AGG | - | chr8_1:63208036-63208055 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACTAAGA+AGG | + | chr8_1:63208188-63208207 | Msa1206240:intron | 40.0% | |
| ACTAAGAGAACTAAGAAGGC+TGG | + | chr8_1:63208192-63208211 | Msa1206240:CDS | 40.0% | |
| TGACTACACCTAGTTTGGAT+TGG | + | chr8_1:63208526-63208545 | Msa1206240:intron | 40.0% | |
| ! | GCCCTAGGTAGTTACATTTT+AGG | + | chr8_1:63208711-63208730 | Msa1206240:intron | 40.0% |
| !! | TAGGTGGTTTGATGTTTTGG+GGG | + | chr8_1:63208730-63208749 | Msa1206240:intron | 40.0% |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_1:63208918-63208937 | None:intergenic | 40.0% | |
| !! | CAGAACTCGGCATTTTGAAA+AGG | - | chr8_1:63209073-63209092 | None:intergenic | 40.0% |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_1:63209124-63209143 | Msa1206240:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_1:63209125-63209144 | Msa1206240:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_1:63209126-63209145 | Msa1206240:CDS | 40.0% | |
| !! | GCTTAGTAGAACGGTTTTGA+AGG | + | chr8_1:63209714-63209733 | Msa1206240:intron | 40.0% |
| !! | TTGGATTGGATGATGGAGAA+GGG | - | chr8_1:63208035-63208054 | None:intergenic | 40.0% |
| !! | ATTGGATTGGATGATGGAGA+AGG | - | chr8_1:63208036-63208055 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACTAAGA+AGG | + | chr8_1:63208188-63208207 | Msa1206240:intron | 40.0% | |
| ACTAAGAGAACTAAGAAGGC+TGG | + | chr8_1:63208192-63208211 | Msa1206240:CDS | 40.0% | |
| TGACTACACCTAGTTTGGAT+TGG | + | chr8_1:63208526-63208545 | Msa1206240:intron | 40.0% | |
| ! | GCCCTAGGTAGTTACATTTT+AGG | + | chr8_1:63208711-63208730 | Msa1206240:intron | 40.0% |
| !! | TAGGTGGTTTGATGTTTTGG+GGG | + | chr8_1:63208730-63208749 | Msa1206240:intron | 40.0% |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_1:63208918-63208937 | None:intergenic | 40.0% | |
| !! | CAGAACTCGGCATTTTGAAA+AGG | - | chr8_1:63209073-63209092 | None:intergenic | 40.0% |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_1:63209124-63209143 | Msa1206240:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_1:63209125-63209144 | Msa1206240:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_1:63209126-63209145 | Msa1206240:CDS | 40.0% | |
| !! | GCTTAGTAGAACGGTTTTGA+AGG | + | chr8_1:63209714-63209733 | Msa1206240:intron | 40.0% |
| !! | TGGATTGGATGATGGAGAAG+GGG | - | chr8_1:63208034-63208053 | None:intergenic | 45.0% |
| ACTAAGAAGGCTGGTATCGT+TGG | + | chr8_1:63208201-63208220 | Msa1206240:CDS | 45.0% | |
| GCTGGTATCGTTGGCAAATA+CGG | + | chr8_1:63208210-63208229 | Msa1206240:CDS | 45.0% | |
| GTAGCTGACTACACCTAGTT+TGG | + | chr8_1:63208521-63208540 | Msa1206240:intron | 45.0% | |
| ! | TTTTTCATAAGCCAGGCCCT+AGG | + | chr8_1:63208696-63208715 | Msa1206240:intron | 45.0% |
| AAATGTAACTACCTAGGGCC+TGG | - | chr8_1:63208710-63208729 | None:intergenic | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_1:63208917-63208936 | None:intergenic | 45.0% | |
| TCTTCACAGCATACTGCAAC+AGG | - | chr8_1:63209107-63209126 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_1:63209110-63209129 | Msa1206240:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_1:63209134-63209153 | Msa1206240:CDS | 45.0% | |
| ATATGGGGATGCAAGGATTG+CGG | + | chr8_1:63209141-63209160 | Msa1206240:CDS | 45.0% | |
| GATTGCGGTAAAGTGAAAGC+AGG | + | chr8_1:63209156-63209175 | Msa1206240:CDS | 45.0% | |
| TGAGAACAAAGTCATGAGGC+TGG | - | chr8_1:63209250-63209269 | None:intergenic | 45.0% | |
| AGGTGTTTGGGGACAATGAA+AGG | - | chr8_1:63209518-63209537 | None:intergenic | 45.0% | |
| TTGTGATTATGTCGAGGCCA+TGG | + | chr8_1:63209612-63209631 | Msa1206240:three_prime_UTR | 45.0% | |
| !! | TGGATTGGATGATGGAGAAG+GGG | - | chr8_1:63208034-63208053 | None:intergenic | 45.0% |
| ACTAAGAAGGCTGGTATCGT+TGG | + | chr8_1:63208201-63208220 | Msa1206240:CDS | 45.0% | |
| GCTGGTATCGTTGGCAAATA+CGG | + | chr8_1:63208210-63208229 | Msa1206240:CDS | 45.0% | |
| GTAGCTGACTACACCTAGTT+TGG | + | chr8_1:63208521-63208540 | Msa1206240:intron | 45.0% | |
| ! | TTTTTCATAAGCCAGGCCCT+AGG | + | chr8_1:63208696-63208715 | Msa1206240:intron | 45.0% |
| AAATGTAACTACCTAGGGCC+TGG | - | chr8_1:63208710-63208729 | None:intergenic | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_1:63208917-63208936 | None:intergenic | 45.0% | |
| TCTTCACAGCATACTGCAAC+AGG | - | chr8_1:63209107-63209126 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_1:63209110-63209129 | Msa1206240:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_1:63209134-63209153 | Msa1206240:CDS | 45.0% | |
| ATATGGGGATGCAAGGATTG+CGG | + | chr8_1:63209141-63209160 | Msa1206240:CDS | 45.0% | |
| GATTGCGGTAAAGTGAAAGC+AGG | + | chr8_1:63209156-63209175 | Msa1206240:CDS | 45.0% | |
| TGAGAACAAAGTCATGAGGC+TGG | - | chr8_1:63209250-63209269 | None:intergenic | 45.0% | |
| AGGTGTTTGGGGACAATGAA+AGG | - | chr8_1:63209518-63209537 | None:intergenic | 45.0% | |
| TTGTGATTATGTCGAGGCCA+TGG | + | chr8_1:63209612-63209631 | Msa1206240:three_prime_UTR | 45.0% | |
| ! | ATCGAAGGAGGTGTGAGCTA+TGG | - | chr8_1:63207979-63207998 | None:intergenic | 50.0% |
| ! | ATGATGGAGAAGGGGAGAAG+GGG | - | chr8_1:63208026-63208045 | None:intergenic | 50.0% |
| !! | GATGATGGAGAAGGGGAGAA+GGG | - | chr8_1:63208027-63208046 | None:intergenic | 50.0% |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_1:63209117-63209136 | Msa1206240:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_1:63209159-63209178 | Msa1206240:CDS | 50.0% | |
| TTGTTCCCTCAACCTCCTGA+TGG | - | chr8_1:63209314-63209333 | None:intergenic | 50.0% | |
| ! | ATCGAAGGAGGTGTGAGCTA+TGG | - | chr8_1:63207979-63207998 | None:intergenic | 50.0% |
| ! | ATGATGGAGAAGGGGAGAAG+GGG | - | chr8_1:63208026-63208045 | None:intergenic | 50.0% |
| !! | GATGATGGAGAAGGGGAGAA+GGG | - | chr8_1:63208027-63208046 | None:intergenic | 50.0% |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_1:63209117-63209136 | Msa1206240:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_1:63209159-63209178 | Msa1206240:CDS | 50.0% | |
| TTGTTCCCTCAACCTCCTGA+TGG | - | chr8_1:63209314-63209333 | None:intergenic | 50.0% | |
| GTGAGCTATGGAAGTGGCAG+CGG | - | chr8_1:63207967-63207986 | None:intergenic | 55.0% | |
| ! | GGAGGTGTGAGCTATGGAAG+TGG | - | chr8_1:63207973-63207992 | None:intergenic | 55.0% |
| !! | GGATGATGGAGAAGGGGAGA+AGG | - | chr8_1:63208028-63208047 | None:intergenic | 55.0% |
| ! | CTGCAAGTGCCGTGACTGTT+CGG | + | chr8_1:63209284-63209303 | Msa1206240:CDS | 55.0% |
| GATGGTGCTCCGAACAGTCA+CGG | - | chr8_1:63209296-63209315 | None:intergenic | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_1:63209296-63209315 | Msa1206240:CDS | 55.0% |
| GAGCACCATCAGGAGGTTGA+GGG | + | chr8_1:63209306-63209325 | Msa1206240:CDS | 55.0% | |
| GTGAGCTATGGAAGTGGCAG+CGG | - | chr8_1:63207967-63207986 | None:intergenic | 55.0% | |
| ! | GGAGGTGTGAGCTATGGAAG+TGG | - | chr8_1:63207973-63207992 | None:intergenic | 55.0% |
| !! | GGATGATGGAGAAGGGGAGA+AGG | - | chr8_1:63208028-63208047 | None:intergenic | 55.0% |
| ! | CTGCAAGTGCCGTGACTGTT+CGG | + | chr8_1:63209284-63209303 | Msa1206240:CDS | 55.0% |
| GATGGTGCTCCGAACAGTCA+CGG | - | chr8_1:63209296-63209315 | None:intergenic | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_1:63209296-63209315 | Msa1206240:CDS | 55.0% |
| GAGCACCATCAGGAGGTTGA+GGG | + | chr8_1:63209306-63209325 | Msa1206240:CDS | 55.0% | |
| TGGAAGTGGCAGCGGTGGAA+TGG | - | chr8_1:63207959-63207978 | None:intergenic | 60.0% | |
| AGCTATGGAAGTGGCAGCGG+TGG | - | chr8_1:63207964-63207983 | None:intergenic | 60.0% | |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_1:63209299-63209318 | Msa1206240:CDS | 60.0% |
| ! | GGAGCACCATCAGGAGGTTG+AGG | + | chr8_1:63209305-63209324 | Msa1206240:CDS | 60.0% |
| TGGAAGTGGCAGCGGTGGAA+TGG | - | chr8_1:63207959-63207978 | None:intergenic | 60.0% | |
| AGCTATGGAAGTGGCAGCGG+TGG | - | chr8_1:63207964-63207983 | None:intergenic | 60.0% | |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_1:63209299-63209318 | Msa1206240:CDS | 60.0% |
| ! | GGAGCACCATCAGGAGGTTG+AGG | + | chr8_1:63209305-63209324 | Msa1206240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 63207929 | 63209825 | 63207929 | ID=Msa1206240;Name=Msa1206240 |
| chr8_1 | mRNA | 63207929 | 63209825 | 63207929 | ID=Msa1206240-mRNA-1;Parent=Msa1206240;Name=Msa1206240-mRNA-1;_AED=0.18;_eAED=0.18;_QI=80|1|1|1|0.8|0.66|6|443|92 |
| chr8_1 | exon | 63207929 | 63208011 | 63207929 | ID=Msa1206240-mRNA-1:exon:20459;Parent=Msa1206240-mRNA-1 |
| chr8_1 | exon | 63208192 | 63208231 | 63208192 | ID=Msa1206240-mRNA-1:exon:20460;Parent=Msa1206240-mRNA-1 |
| chr8_1 | exon | 63208911 | 63208999 | 63208911 | ID=Msa1206240-mRNA-1:exon:20461;Parent=Msa1206240-mRNA-1 |
| chr8_1 | exon | 63209114 | 63209196 | 63209114 | ID=Msa1206240-mRNA-1:exon:20462;Parent=Msa1206240-mRNA-1 |
| chr8_1 | exon | 63209282 | 63209722 | 63209282 | ID=Msa1206240-mRNA-1:exon:20463;Parent=Msa1206240-mRNA-1 |
| chr8_1 | exon | 63209760 | 63209825 | 63209760 | ID=Msa1206240-mRNA-1:exon:20464;Parent=Msa1206240-mRNA-1 |
| chr8_1 | five_prime_UTR | 63207929 | 63208008 | 63207929 | ID=Msa1206240-mRNA-1:five_prime_utr;Parent=Msa1206240-mRNA-1 |
| chr8_1 | CDS | 63208009 | 63208011 | 63208009 | ID=Msa1206240-mRNA-1:cds;Parent=Msa1206240-mRNA-1 |
| chr8_1 | CDS | 63208192 | 63208231 | 63208192 | ID=Msa1206240-mRNA-1:cds;Parent=Msa1206240-mRNA-1 |
| chr8_1 | CDS | 63208911 | 63208999 | 63208911 | ID=Msa1206240-mRNA-1:cds;Parent=Msa1206240-mRNA-1 |
| chr8_1 | CDS | 63209114 | 63209196 | 63209114 | ID=Msa1206240-mRNA-1:cds;Parent=Msa1206240-mRNA-1 |
| chr8_1 | CDS | 63209282 | 63209345 | 63209282 | ID=Msa1206240-mRNA-1:cds;Parent=Msa1206240-mRNA-1 |
| chr8_1 | three_prime_UTR | 63209346 | 63209722 | 63209346 | ID=Msa1206240-mRNA-1:three_prime_utr;Parent=Msa1206240-mRNA-1 |
| chr8_1 | three_prime_UTR | 63209760 | 63209825 | 63209760 | ID=Msa1206240-mRNA-1:three_prime_utr;Parent=Msa1206240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
