AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758420 MtrunA17_Chr5g0405281 100.000 258 0 0 1 258 1 258 0.0 527
Msa0758420 MtrunA17_Chr7g0247311 95.736 258 11 0 1 258 1 258 0.0 508
Msa0758420 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.45e-23 96.3
Msa0758420 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0758420 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0758420 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0758420 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 9.52e-23 94.0
Msa0758420 MtrunA17_Chr2g0283311 39.316 117 65 3 98 214 51 161 4.42e-18 80.1
Msa0758420 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 7.58e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758420 AT4G36130.1 92.636 258 19 0 1 258 1 258 1.25e-180 496
Msa0758420 AT2G18020.1 91.860 258 21 0 1 258 1 258 7.56e-175 482
Msa0758420 AT3G51190.1 84.519 239 36 1 1 238 1 239 5.84e-152 424
Msa0758420 ATCG01310.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0758420 ATCG00830.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0758420 AT2G44065.3 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0758420 AT2G44065.1 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0758420 AT2G44065.2 36.691 139 80 3 97 234 58 189 7.53e-18 80.1

Find 114 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGCTTACCACAAATTT+AGG 0.139039 5_2:-13712293 Msa0758420:CDS
TTCTGTTTCTTATATCTAAA+AGG 0.141313 5_2:+13713800 None:intergenic
TTCATAGTTTACCTTCCTTC+TGG 0.178330 5_2:-13711886 Msa0758420:three_prime_UTR
TTTCGTTCACTACTCCTTTC+AGG 0.192080 5_2:+13713876 None:intergenic
AATAGTTTCATATAAATAAA+TGG 0.198587 5_2:+13711949 None:intergenic
GAGTCGTAGGTTTAGGTTTC+CGG 0.212094 5_2:-13714022 Msa0758420:five_prime_UTR
GCGAGATGGGTAGGGTTATC+AGG 0.218220 5_2:-13714000 Msa0758420:exon
ACCACCGTGCGGCGATGATA+TGG 0.271441 5_2:+13714047 None:intergenic
GCTAGTGGTGCACCGCGACC+TGG 0.291779 5_2:+13713842 None:intergenic
CCTTCAGGAATCATCCTTAA+TGG 0.296951 5_2:+13713689 None:intergenic
CTCAAAATACCCAAGTAGTT+TGG 0.316292 5_2:+13711983 None:intergenic
TCATAGTTTACCTTCCTTCT+GGG 0.330660 5_2:-13711885 Msa0758420:three_prime_UTR
TTCAGAGAAGTTAGGGTTTG+AGG 0.339397 5_2:+13714077 None:intergenic
TAATGCTTACCACAAATTTA+GGG 0.348170 5_2:-13712292 Msa0758420:CDS
AACCTAGAGGTATCATTATC+AGG 0.354338 5_2:+13713575 None:intergenic
GGCCTTTGCGATGGTGGGTG+TGG 0.359733 5_2:+13713942 None:intergenic
TCCTCTTCACCCTAAATTTG+TGG 0.369145 5_2:+13712283 None:intergenic
AAATAGTCTTATCAGTTAAT+CGG 0.370160 5_2:+13712071 None:intergenic
TGCAATTTATTTGTCTAGGT+TGG 0.371314 5_2:-13711803 Msa0758420:three_prime_UTR
ATAGTTTCATATAAATAAAT+GGG 0.374256 5_2:+13711950 None:intergenic
CGTTTCCGCAGTCTCGATTT+CGG 0.389930 5_2:-13713914 Msa0758420:CDS
GAAATGAGTTCAGAGAAGTT+AGG 0.390313 5_2:+13714069 None:intergenic
GCTATGATTGGGCAAGTTGC+AGG 0.391634 5_2:-13712351 Msa0758420:CDS
AGCTGCTTCCGCTGCTGCTA+AGG 0.391726 5_2:-13712094 Msa0758420:CDS
GTGGTTAGAGTCGTAGGTTT+AGG 0.393021 5_2:-13714029 Msa0758420:five_prime_UTR
CTAAGAGAACTGGTCGTCTC+AGG 0.393643 5_2:-13712122 Msa0758420:CDS
AAATGAGTTCAGAGAAGTTA+GGG 0.407150 5_2:+13714070 None:intergenic
GCCTTTGCGATGGTGGGTGT+GGG 0.420149 5_2:+13713943 None:intergenic
TTACAAATAACCGCACCTTC+AGG 0.420706 5_2:+13713674 None:intergenic
CCTCCATGAGGATGTTCAAC+TGG 0.422258 5_2:+13712225 None:intergenic
CAGGACAGTTTATTTATTGT+GGG 0.425190 5_2:-13713745 Msa0758420:CDS
GACAGGATTAAGCTACCATC+AGG 0.430549 5_2:-13712405 Msa0758420:intron
TTAGGGTGAAGAGGAATTGT+TGG 0.435774 5_2:-13712275 Msa0758420:CDS
TCTGTTTCTTATATCTAAAA+GGG 0.435806 5_2:+13713801 None:intergenic
GTTAGGCGTGATGCTCCTCC+TGG 0.436286 5_2:-13712168 Msa0758420:CDS
CTCATTGCTGCTAAGAGAAC+TGG 0.437152 5_2:-13712132 Msa0758420:CDS
TCGAGACTGCGGAAACGTGC+TGG 0.440209 5_2:+13713920 None:intergenic
ATATAAATAAATGGGGCAAA+AGG 0.444062 5_2:+13711958 None:intergenic
AACTGAGAAGCCAATGCTTA+AGG 0.445753 5_2:-13712319 Msa0758420:CDS
GGAGGTAACCACCAGCATAT+TGG 0.446084 5_2:-13712204 Msa0758420:CDS
ACAGGACAGTTTATTTATTG+TGG 0.446996 5_2:-13713746 Msa0758420:CDS
GGTTTAGGTTTCCGGCGAGA+TGG 0.456405 5_2:-13714014 Msa0758420:exon
TCTGTGCAATTTATTTGTCT+AGG 0.457246 5_2:-13711807 Msa0758420:three_prime_UTR
CTCGATTTCGGTGAAAGAAA+CGG 0.463830 5_2:-13713902 Msa0758420:CDS
GCATTACCAGCCTTAAGCAT+TGG 0.465748 5_2:+13712309 None:intergenic
AGTGAGTGCAGAGCTATGAT+TGG 0.480414 5_2:-13712363 Msa0758420:CDS
GTTTAGGTTTCCGGCGAGAT+GGG 0.481065 5_2:-13714013 Msa0758420:exon
TGCTGGGCCTTTGCGATGGT+GGG 0.484311 5_2:+13713937 None:intergenic
AGGTTTCCGGCGAGATGGGT+AGG 0.490187 5_2:-13714009 Msa0758420:exon
CGAGACTGCGGAAACGTGCT+GGG 0.490564 5_2:+13713921 None:intergenic
TTGGACATGCTAGTACTGTT+AGG 0.490772 5_2:-13712185 Msa0758420:CDS
TTCATACCTTGTCCAGGTAG+TGG 0.491989 5_2:-13711758 Msa0758420:three_prime_UTR
CTAGTGGTGCACCGCGACCT+GGG 0.492115 5_2:+13713843 None:intergenic
GTGCTGGGCCTTTGCGATGG+TGG 0.492579 5_2:+13713936 None:intergenic
ATCATAGCTCTGCACTCACT+TGG 0.492967 5_2:+13712366 None:intergenic
ACAATCTTCTTTGCCCCTGA+TGG 0.501695 5_2:+13712390 None:intergenic
AATTGTTGGCCTAAGGTTCG+TGG 0.507434 5_2:-13712261 Msa0758420:CDS
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 5_2:-13712156 Msa0758420:CDS
GGTTTCTTAATTGTAAGTGC+AGG 0.509090 5_2:-13711782 Msa0758420:three_prime_UTR
GAAGAGGAATTGTTGGCCTA+AGG 0.511303 5_2:-13712268 Msa0758420:CDS
ACTATTTGAAGAGATTCTTA+CGG 0.514311 5_2:-13712055 Msa0758420:three_prime_UTR
ATCATTCACGACCCAGGTCG+CGG 0.520973 5_2:-13713854 Msa0758420:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 5_2:+13712150 None:intergenic
ATTGGGCAAGTTGCAGGTGG+AGG 0.539757 5_2:-13712345 Msa0758420:CDS
GTGAGTGCAGAGCTATGATT+GGG 0.540155 5_2:-13712362 Msa0758420:CDS
GGTTTCCGGCGAGATGGGTA+GGG 0.540978 5_2:-13714008 Msa0758420:exon
TACTAGCATGTCCAATATGC+TGG 0.543123 5_2:+13712193 None:intergenic
GTGGGTGTGGGACTTGAAAA+CGG 0.548294 5_2:+13713955 None:intergenic
GAGAAGCCAATGCTTAAGGC+TGG 0.549710 5_2:-13712315 Msa0758420:CDS
TGATGCTCCTCCTGGACAGA+AGG 0.551156 5_2:-13712160 Msa0758420:CDS
ACCACAAATTTAGGGTGAAG+AGG 0.551702 5_2:-13712284 Msa0758420:CDS
TCTTATATCTAAAAGGGTGT+CGG 0.552820 5_2:+13713807 None:intergenic
AGGGCACAACGTAAAGGAGC+AGG 0.552983 5_2:-13713980 Msa0758420:CDS
CGAGATGGGTAGGGTTATCA+GGG 0.554090 5_2:-13713999 Msa0758420:exon
GAAAGAAACGGTTACCTGAA+AGG 0.558738 5_2:-13713890 Msa0758420:CDS
GTTATCAGGGCACAACGTAA+AGG 0.562139 5_2:-13713986 Msa0758420:CDS
GCAGGATTCATACCTTGTCC+AGG 0.564769 5_2:-13711764 Msa0758420:three_prime_UTR
ATAGTACAACAACCACTACC+TGG 0.564790 5_2:+13711746 None:intergenic
AACGAAATCATTCACGACCC+AGG 0.570840 5_2:-13713860 Msa0758420:CDS
TAAGAGAACTGGTCGTCTCA+GGG 0.573235 5_2:-13712121 Msa0758420:CDS
TCGCGGTGCACCACTAGCTA+AGG 0.577052 5_2:-13713837 Msa0758420:CDS
CGCACGGTGGTTAGAGTCGT+AGG 0.577340 5_2:-13714035 Msa0758420:five_prime_UTR
ATGAAACTATTACATGACAA+TGG 0.580194 5_2:-13711937 Msa0758420:three_prime_UTR
AATCCAGTTGAACATCCTCA+TGG 0.581222 5_2:-13712228 Msa0758420:CDS
AACGTGCTGGGCCTTTGCGA+TGG 0.587555 5_2:+13713933 None:intergenic
TGTAATGTTGAACATCATGT+TGG 0.589500 5_2:-13713656 Msa0758420:CDS
ATAGCCACACCACGAACCTT+AGG 0.594313 5_2:+13712252 None:intergenic
TCCCACACCCACCATCGCAA+AGG 0.598343 5_2:-13713944 Msa0758420:CDS
CCATTAAGGATGATTCCTGA+AGG 0.598808 5_2:-13713689 Msa0758420:CDS
TTGGCCTAAGGTTCGTGGTG+TGG 0.606540 5_2:-13712256 Msa0758420:CDS
ACAGGATTAAGCTACCATCA+GGG 0.606815 5_2:-13712404 Msa0758420:intron
GTTGAACATCCTCATGGAGG+AGG 0.607255 5_2:-13712222 Msa0758420:CDS
CTAGATGAAACCCAGAAGGA+AGG 0.618373 5_2:+13711875 None:intergenic
GCTGCTGAGGGACTTTACAC+AGG 0.622566 5_2:-13713764 Msa0758420:CDS
ATCCTGATAATGATACCTCT+AGG 0.627712 5_2:-13713577 Msa0758420:intron
ATGATTGGGCAAGTTGCAGG+TGG 0.627869 5_2:-13712348 Msa0758420:CDS
AAGGATGATTCCTGAAGGTG+CGG 0.634290 5_2:-13713684 Msa0758420:CDS
CAGGATTAAGCTACCATCAG+GGG 0.634909 5_2:-13712403 Msa0758420:CDS
TTAATCGGCCTTAGCAGCAG+CGG 0.643504 5_2:+13712086 None:intergenic
AGAACTAGATGAAACCCAGA+AGG 0.643968 5_2:+13711871 None:intergenic
GAACATCATGTTGGTGATCG+TGG 0.646474 5_2:-13713647 Msa0758420:CDS
GATAACCCTACCCATCTCGC+CGG 0.648671 5_2:+13714003 None:intergenic
TCCATATCATCGCCGCACGG+TGG 0.651259 5_2:-13714048 Msa0758420:five_prime_UTR
CAACAACCACTACCTGGACA+AGG 0.656515 5_2:+13711752 None:intergenic
TTTCACCGAAATCGAGACTG+CGG 0.661724 5_2:+13713909 None:intergenic
TAGTTTCATATAAATAAATG+GGG 0.665747 5_2:+13711951 None:intergenic
TAGCATGTCCAATATGCTGG+TGG 0.670638 5_2:+13712196 None:intergenic
CGGAATGTGACCTTAGCTAG+TGG 0.672073 5_2:+13713827 None:intergenic
AAGAGAACTGGTCGTCTCAG+GGG 0.684178 5_2:-13712120 Msa0758420:CDS
TGGTGGTTACCTCCTCCATG+AGG 0.690890 5_2:+13712213 None:intergenic
AGACCAACCTTCTGTCCAGG+AGG 0.695738 5_2:+13712153 None:intergenic
ATTTCCATATCATCGCCGCA+CGG 0.725893 5_2:-13714051 Msa0758420:five_prime_UTR
CCAGTTGAACATCCTCATGG+AGG 0.726090 5_2:-13712225 Msa0758420:CDS
CTACGACTCTAACCACCGTG+CGG 0.804232 5_2:+13714036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTTCATATAAATAAAT+GGG + chr5_2:13713874-13713893 None:intergenic 10.0%
!! AATAGTTTCATATAAATAAA+TGG + chr5_2:13713875-13713894 None:intergenic 10.0%
!! ATAGTTTCATATAAATAAAT+GGG + chr5_2:13713874-13713893 None:intergenic 10.0%
!! AATAGTTTCATATAAATAAA+TGG + chr5_2:13713875-13713894 None:intergenic 10.0%
!! TGCAATATGTTAATTAAAAA+TGG + chr5_2:13712325-13712344 None:intergenic 15.0%
!!! ATTTTTAATTAACATATTGC+AGG - chr5_2:13712324-13712343 Msa0758420:CDS 15.0%
!! AAATATACAAATATGATTTG+TGG - chr5_2:13712375-13712394 Msa0758420:CDS 15.0%
!! TATAAAAATTTCAATTACGT+GGG - chr5_2:13713242-13713261 Msa0758420:intron 15.0%
!! TAGTTTCATATAAATAAATG+GGG + chr5_2:13713873-13713892 None:intergenic 15.0%
!! TGCAATATGTTAATTAAAAA+TGG + chr5_2:13712325-13712344 None:intergenic 15.0%
!!! ATTTTTAATTAACATATTGC+AGG - chr5_2:13712324-13712343 Msa0758420:CDS 15.0%
!! AAATATACAAATATGATTTG+TGG - chr5_2:13712375-13712394 Msa0758420:CDS 15.0%
!! TATAAAAATTTCAATTACGT+GGG - chr5_2:13713242-13713261 Msa0758420:intron 15.0%
!! TAGTTTCATATAAATAAATG+GGG + chr5_2:13713873-13713892 None:intergenic 15.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_2:13712023-13712042 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_2:13712024-13712043 None:intergenic 20.0%
!! TTAATTAACATTAGCAAAGA+TGG - chr5_2:13712525-13712544 Msa0758420:intron 20.0%
!! CTTAAAAATTTGAATGATGT+GGG - chr5_2:13712896-13712915 Msa0758420:intron 20.0%
!! GTATAAAAATTTCAATTACG+TGG - chr5_2:13713241-13713260 Msa0758420:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_2:13713377-13713396 Msa0758420:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_2:13713378-13713397 Msa0758420:intron 20.0%
!!! AAATAGTCTTATCAGTTAAT+CGG + chr5_2:13713753-13713772 None:intergenic 20.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_2:13712023-13712042 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_2:13712024-13712043 None:intergenic 20.0%
!! TTAATTAACATTAGCAAAGA+TGG - chr5_2:13712525-13712544 Msa0758420:intron 20.0%
!! CTTAAAAATTTGAATGATGT+GGG - chr5_2:13712896-13712915 Msa0758420:intron 20.0%
!! GTATAAAAATTTCAATTACG+TGG - chr5_2:13713241-13713260 Msa0758420:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_2:13713377-13713396 Msa0758420:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_2:13713378-13713397 Msa0758420:intron 20.0%
!!! AAATAGTCTTATCAGTTAAT+CGG + chr5_2:13713753-13713772 None:intergenic 20.0%
! ATGACACACTAATTTCTAAA+TGG + chr5_2:13712455-13712474 None:intergenic 25.0%
! AGAATTAGAAATGACAATGT+TGG - chr5_2:13712586-13712605 Msa0758420:intron 25.0%
! GAATTAGAAATGACAATGTT+GGG - chr5_2:13712587-13712606 Msa0758420:intron 25.0%
! AATTAGAAATGACAATGTTG+GGG - chr5_2:13712588-13712607 Msa0758420:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr5_2:13712749-13712768 None:intergenic 25.0%
! TATAAGAGAAACTAGTAAGA+AGG - chr5_2:13712757-13712776 Msa0758420:intron 25.0%
!! CTTTTTGATAGAACACTATA+AGG - chr5_2:13712812-13712831 Msa0758420:intron 25.0%
! GCTTAAAAATTTGAATGATG+TGG - chr5_2:13712895-13712914 Msa0758420:intron 25.0%
! TATAAACGCAGTTACATTTA+TGG + chr5_2:13713090-13713109 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_2:13713529-13713548 Msa0758420:intron 25.0%
! ACTATTTGAAGAGATTCTTA+CGG - chr5_2:13713766-13713785 Msa0758420:CDS 25.0%
!!! TTGTTTTTTCCAAACTACTT+GGG - chr5_2:13713829-13713848 Msa0758420:CDS 25.0%
! ATATAAATAAATGGGGCAAA+AGG + chr5_2:13713866-13713885 None:intergenic 25.0%
! ATGAAACTATTACATGACAA+TGG - chr5_2:13713884-13713903 Msa0758420:CDS 25.0%
! ATGACACACTAATTTCTAAA+TGG + chr5_2:13712455-13712474 None:intergenic 25.0%
! AGAATTAGAAATGACAATGT+TGG - chr5_2:13712586-13712605 Msa0758420:intron 25.0%
! GAATTAGAAATGACAATGTT+GGG - chr5_2:13712587-13712606 Msa0758420:intron 25.0%
! AATTAGAAATGACAATGTTG+GGG - chr5_2:13712588-13712607 Msa0758420:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + chr5_2:13712749-13712768 None:intergenic 25.0%
! TATAAGAGAAACTAGTAAGA+AGG - chr5_2:13712757-13712776 Msa0758420:intron 25.0%
!! CTTTTTGATAGAACACTATA+AGG - chr5_2:13712812-13712831 Msa0758420:intron 25.0%
! GCTTAAAAATTTGAATGATG+TGG - chr5_2:13712895-13712914 Msa0758420:intron 25.0%
! TATAAACGCAGTTACATTTA+TGG + chr5_2:13713090-13713109 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_2:13713529-13713548 Msa0758420:intron 25.0%
! ACTATTTGAAGAGATTCTTA+CGG - chr5_2:13713766-13713785 Msa0758420:CDS 25.0%
!!! TTGTTTTTTCCAAACTACTT+GGG - chr5_2:13713829-13713848 Msa0758420:CDS 25.0%
! ATATAAATAAATGGGGCAAA+AGG + chr5_2:13713866-13713885 None:intergenic 25.0%
! ATGAAACTATTACATGACAA+TGG - chr5_2:13713884-13713903 Msa0758420:CDS 25.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_2:13711754-13711773 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_2:13712017-13712036 None:intergenic 30.0%
ACAGGACAGTTTATTTATTG+TGG - chr5_2:13712075-13712094 Msa0758420:exon 30.0%
CAGGACAGTTTATTTATTGT+GGG - chr5_2:13712076-13712095 Msa0758420:exon 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_2:13712099-13712118 Msa0758420:CDS 30.0%
! TTGGAAATGTTTTGCCATTA+AGG - chr5_2:13712118-13712137 Msa0758420:CDS 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_2:13712165-13712184 Msa0758420:CDS 30.0%
! AATATGATTTGTGGTGATGA+TGG - chr5_2:13712384-13712403 Msa0758420:CDS 30.0%
TATGTTAATGTACTTCGTAG+TGG - chr5_2:13712417-13712436 Msa0758420:intron 30.0%
ATTAGAAATGACAATGTTGG+GGG - chr5_2:13712589-13712608 Msa0758420:intron 30.0%
AGATAGTAAGAACTAGACTT+TGG - chr5_2:13712636-13712655 Msa0758420:intron 30.0%
AAAATGTGGATTCTGTAGTA+AGG - chr5_2:13712675-13712694 Msa0758420:intron 30.0%
GTTAATCAATCATAACTGTC+CGG - chr5_2:13713047-13713066 Msa0758420:intron 30.0%
! TGTGAAACTTTTTGTACTTC+TGG - chr5_2:13713142-13713161 Msa0758420:intron 30.0%
AAAATTTCAATTACGTGGGA+TGG - chr5_2:13713246-13713265 Msa0758420:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_2:13713528-13713547 Msa0758420:intron 30.0%
CAAGTAGTTTGGAAAAAACA+AGG + chr5_2:13713830-13713849 None:intergenic 30.0%
!!! CTTGTTTTTTCCAAACTACT+TGG - chr5_2:13713828-13713847 Msa0758420:CDS 30.0%
TCTGTGCAATTTATTTGTCT+AGG - chr5_2:13714014-13714033 Msa0758420:exon 30.0%
TGCAATTTATTTGTCTAGGT+TGG - chr5_2:13714018-13714037 Msa0758420:five_prime_UTR 30.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_2:13711754-13711773 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_2:13712017-13712036 None:intergenic 30.0%
ACAGGACAGTTTATTTATTG+TGG - chr5_2:13712075-13712094 Msa0758420:exon 30.0%
CAGGACAGTTTATTTATTGT+GGG - chr5_2:13712076-13712095 Msa0758420:exon 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_2:13712099-13712118 Msa0758420:CDS 30.0%
! TTGGAAATGTTTTGCCATTA+AGG - chr5_2:13712118-13712137 Msa0758420:CDS 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_2:13712165-13712184 Msa0758420:CDS 30.0%
! AATATGATTTGTGGTGATGA+TGG - chr5_2:13712384-13712403 Msa0758420:CDS 30.0%
TATGTTAATGTACTTCGTAG+TGG - chr5_2:13712417-13712436 Msa0758420:intron 30.0%
ATTAGAAATGACAATGTTGG+GGG - chr5_2:13712589-13712608 Msa0758420:intron 30.0%
AGATAGTAAGAACTAGACTT+TGG - chr5_2:13712636-13712655 Msa0758420:intron 30.0%
AAAATGTGGATTCTGTAGTA+AGG - chr5_2:13712675-13712694 Msa0758420:intron 30.0%
GTTAATCAATCATAACTGTC+CGG - chr5_2:13713047-13713066 Msa0758420:intron 30.0%
! TGTGAAACTTTTTGTACTTC+TGG - chr5_2:13713142-13713161 Msa0758420:intron 30.0%
AAAATTTCAATTACGTGGGA+TGG - chr5_2:13713246-13713265 Msa0758420:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_2:13713528-13713547 Msa0758420:intron 30.0%
CAAGTAGTTTGGAAAAAACA+AGG + chr5_2:13713830-13713849 None:intergenic 30.0%
!!! CTTGTTTTTTCCAAACTACT+TGG - chr5_2:13713828-13713847 Msa0758420:CDS 30.0%
TCTGTGCAATTTATTTGTCT+AGG - chr5_2:13714014-13714033 Msa0758420:exon 30.0%
TGCAATTTATTTGTCTAGGT+TGG - chr5_2:13714018-13714037 Msa0758420:five_prime_UTR 30.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_2:13711755-13711774 None:intergenic 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_2:13712244-13712263 Msa0758420:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_2:13712249-13712268 None:intergenic 35.0%
CAAAGATGGAGATGTAACAT+GGG - chr5_2:13712539-13712558 Msa0758420:intron 35.0%
CTTACTATCTTTCCTACTGT+AGG + chr5_2:13712626-13712645 None:intergenic 35.0%
TAGTAAGAACTAGACTTTGG+TGG - chr5_2:13712639-13712658 Msa0758420:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr5_2:13712691-13712710 Msa0758420:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr5_2:13712778-13712797 Msa0758420:intron 35.0%
GTGCATGGAAATTATACTCT+TGG - chr5_2:13713164-13713183 Msa0758420:intron 35.0%
!!! GGTGTTCATGTTTTTTTGAC+AGG - chr5_2:13713399-13713418 Msa0758420:intron 35.0%
CTCAAAATACCCAAGTAGTT+TGG + chr5_2:13713841-13713860 None:intergenic 35.0%
TTCATAGTTTACCTTCCTTC+TGG - chr5_2:13713935-13713954 Msa0758420:CDS 35.0%
TCATAGTTTACCTTCCTTCT+GGG - chr5_2:13713936-13713955 Msa0758420:CDS 35.0%
GGTTTCTTAATTGTAAGTGC+AGG - chr5_2:13714039-13714058 Msa0758420:five_prime_UTR 35.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_2:13711755-13711774 None:intergenic 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_2:13712244-13712263 Msa0758420:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_2:13712249-13712268 None:intergenic 35.0%
CAAAGATGGAGATGTAACAT+GGG - chr5_2:13712539-13712558 Msa0758420:intron 35.0%
CTTACTATCTTTCCTACTGT+AGG + chr5_2:13712626-13712645 None:intergenic 35.0%
TAGTAAGAACTAGACTTTGG+TGG - chr5_2:13712639-13712658 Msa0758420:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr5_2:13712691-13712710 Msa0758420:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr5_2:13712778-13712797 Msa0758420:intron 35.0%
GTGCATGGAAATTATACTCT+TGG - chr5_2:13713164-13713183 Msa0758420:intron 35.0%
!!! GGTGTTCATGTTTTTTTGAC+AGG - chr5_2:13713399-13713418 Msa0758420:intron 35.0%
CTCAAAATACCCAAGTAGTT+TGG + chr5_2:13713841-13713860 None:intergenic 35.0%
TTCATAGTTTACCTTCCTTC+TGG - chr5_2:13713935-13713954 Msa0758420:CDS 35.0%
TCATAGTTTACCTTCCTTCT+GGG - chr5_2:13713936-13713955 Msa0758420:CDS 35.0%
GGTTTCTTAATTGTAAGTGC+AGG - chr5_2:13714039-13714058 Msa0758420:five_prime_UTR 35.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_2:13711919-13711938 Msa0758420:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTGAA+AGG - chr5_2:13711931-13711950 Msa0758420:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTC+AGG + chr5_2:13711948-13711967 None:intergenic 40.0%
CCTTCAGGAATCATCCTTAA+TGG + chr5_2:13712135-13712154 None:intergenic 40.0%
CCATTAAGGATGATTCCTGA+AGG - chr5_2:13712132-13712151 Msa0758420:CDS 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_2:13712150-13712169 None:intergenic 40.0%
GCAAAGATGGAGATGTAACA+TGG - chr5_2:13712538-13712557 Msa0758420:intron 40.0%
! AGAACTAGACTTTGGTGGTT+TGG - chr5_2:13712644-13712663 Msa0758420:intron 40.0%
! GAACTAGACTTTGGTGGTTT+GGG - chr5_2:13712645-13712664 Msa0758420:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr5_2:13712694-13712713 Msa0758420:intron 40.0%
AGGAGAGTAGATTAGATGGA+GGG - chr5_2:13712695-13712714 Msa0758420:intron 40.0%
GAAGTCAAATCACTAGAGGT+AGG - chr5_2:13712717-13712736 Msa0758420:intron 40.0%
CACATACACGAAAGTTTACG+TGG - chr5_2:13713025-13713044 Msa0758420:intron 40.0%
! CTTTTTGTACTTCTGGTGCA+TGG - chr5_2:13713149-13713168 Msa0758420:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_2:13713417-13713436 Msa0758420:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_2:13713502-13713521 Msa0758420:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_2:13713537-13713556 Msa0758420:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_2:13713541-13713560 None:intergenic 40.0%
TTAGGGTGAAGAGGAATTGT+TGG - chr5_2:13713546-13713565 Msa0758420:intron 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_2:13713593-13713612 Msa0758420:CDS 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_2:13713631-13713650 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_2:13713636-13713655 Msa0758420:CDS 40.0%
AGAACTAGATGAAACCCAGA+AGG + chr5_2:13713953-13713972 None:intergenic 40.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_2:13711919-13711938 Msa0758420:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTGAA+AGG - chr5_2:13711931-13711950 Msa0758420:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTC+AGG + chr5_2:13711948-13711967 None:intergenic 40.0%
CCTTCAGGAATCATCCTTAA+TGG + chr5_2:13712135-13712154 None:intergenic 40.0%
CCATTAAGGATGATTCCTGA+AGG - chr5_2:13712132-13712151 Msa0758420:CDS 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_2:13712150-13712169 None:intergenic 40.0%
GCAAAGATGGAGATGTAACA+TGG - chr5_2:13712538-13712557 Msa0758420:intron 40.0%
! AGAACTAGACTTTGGTGGTT+TGG - chr5_2:13712644-13712663 Msa0758420:intron 40.0%
! GAACTAGACTTTGGTGGTTT+GGG - chr5_2:13712645-13712664 Msa0758420:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr5_2:13712694-13712713 Msa0758420:intron 40.0%
AGGAGAGTAGATTAGATGGA+GGG - chr5_2:13712695-13712714 Msa0758420:intron 40.0%
GAAGTCAAATCACTAGAGGT+AGG - chr5_2:13712717-13712736 Msa0758420:intron 40.0%
CACATACACGAAAGTTTACG+TGG - chr5_2:13713025-13713044 Msa0758420:intron 40.0%
! CTTTTTGTACTTCTGGTGCA+TGG - chr5_2:13713149-13713168 Msa0758420:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_2:13713417-13713436 Msa0758420:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_2:13713502-13713521 Msa0758420:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_2:13713537-13713556 Msa0758420:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_2:13713541-13713560 None:intergenic 40.0%
TTAGGGTGAAGAGGAATTGT+TGG - chr5_2:13713546-13713565 Msa0758420:intron 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_2:13713593-13713612 Msa0758420:CDS 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_2:13713631-13713650 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_2:13713636-13713655 Msa0758420:CDS 40.0%
AGAACTAGATGAAACCCAGA+AGG + chr5_2:13713953-13713972 None:intergenic 40.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_2:13711770-13711789 Msa0758420:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_2:13711792-13711811 Msa0758420:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_2:13711799-13711818 Msa0758420:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_2:13711835-13711854 Msa0758420:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_2:13711915-13711934 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_2:13711961-13711980 Msa0758420:three_prime_UTR 45.0%
AAGGATGATTCCTGAAGGTG+CGG - chr5_2:13712137-13712156 Msa0758420:CDS 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_2:13712174-13712193 Msa0758420:CDS 45.0%
GTGAGAGAGAACAAACCTAG+AGG + chr5_2:13712262-13712281 None:intergenic 45.0%
GAGATGTAACATGGGATGTG+TGG - chr5_2:13712547-13712566 Msa0758420:intron 45.0%
GGATGTGTGGAAAGACTAGA+CGG - chr5_2:13712560-13712579 Msa0758420:intron 45.0%
GATGTGTGGAAAGACTAGAC+GGG - chr5_2:13712561-13712580 Msa0758420:intron 45.0%
GTTTGGGCATGTGGAAAATG+TGG - chr5_2:13712661-13712680 Msa0758420:intron 45.0%
GAGGGAAGTCAAATCACTAG+AGG - chr5_2:13712713-13712732 Msa0758420:intron 45.0%
ATGTAACCGATCCCACATAG+TGG - chr5_2:13712846-13712865 Msa0758420:intron 45.0%
TGTAACCGATCCCACATAGT+GGG - chr5_2:13712847-13712866 Msa0758420:intron 45.0%
CTTATCCCACTATGTGGGAT+CGG + chr5_2:13712855-13712874 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG + chr5_2:13712860-13712879 None:intergenic 45.0%
GGTCAAGCAACTTGTATGAC+CGG + chr5_2:13713069-13713088 None:intergenic 45.0%
TCAATTACGTGGGATGGTGA+TGG - chr5_2:13713252-13713271 Msa0758420:intron 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_2:13713416-13713435 Msa0758420:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_2:13713418-13713437 Msa0758420:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_2:13713434-13713453 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_2:13713458-13713477 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_2:13713458-13713477 Msa0758420:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_2:13713459-13713478 Msa0758420:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_2:13713515-13713534 None:intergenic 45.0%
! GAAGAGGAATTGTTGGCCTA+AGG - chr5_2:13713553-13713572 Msa0758420:intron 45.0%
! AATTGTTGGCCTAAGGTTCG+TGG - chr5_2:13713560-13713579 Msa0758420:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_2:13713628-13713647 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_2:13713689-13713708 Msa0758420:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_2:13713700-13713719 Msa0758420:CDS 45.0%
CTAGATGAAACCCAGAAGGA+AGG + chr5_2:13713949-13713968 None:intergenic 45.0%
TTCATACCTTGTCCAGGTAG+TGG - chr5_2:13714063-13714082 Msa0758420:five_prime_UTR 45.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_2:13711770-13711789 Msa0758420:three_prime_UTR 45.0%
GTGGTTAGAGTCGTAGGTTT+AGG - chr5_2:13711792-13711811 Msa0758420:three_prime_UTR 45.0%
! GAGTCGTAGGTTTAGGTTTC+CGG - chr5_2:13711799-13711818 Msa0758420:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_2:13711835-13711854 Msa0758420:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_2:13711915-13711934 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_2:13711961-13711980 Msa0758420:three_prime_UTR 45.0%
AAGGATGATTCCTGAAGGTG+CGG - chr5_2:13712137-13712156 Msa0758420:CDS 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_2:13712174-13712193 Msa0758420:CDS 45.0%
GTGAGAGAGAACAAACCTAG+AGG + chr5_2:13712262-13712281 None:intergenic 45.0%
GAGATGTAACATGGGATGTG+TGG - chr5_2:13712547-13712566 Msa0758420:intron 45.0%
GGATGTGTGGAAAGACTAGA+CGG - chr5_2:13712560-13712579 Msa0758420:intron 45.0%
GATGTGTGGAAAGACTAGAC+GGG - chr5_2:13712561-13712580 Msa0758420:intron 45.0%
GTTTGGGCATGTGGAAAATG+TGG - chr5_2:13712661-13712680 Msa0758420:intron 45.0%
GAGGGAAGTCAAATCACTAG+AGG - chr5_2:13712713-13712732 Msa0758420:intron 45.0%
ATGTAACCGATCCCACATAG+TGG - chr5_2:13712846-13712865 Msa0758420:intron 45.0%
TGTAACCGATCCCACATAGT+GGG - chr5_2:13712847-13712866 Msa0758420:intron 45.0%
CTTATCCCACTATGTGGGAT+CGG + chr5_2:13712855-13712874 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG + chr5_2:13712860-13712879 None:intergenic 45.0%
GGTCAAGCAACTTGTATGAC+CGG + chr5_2:13713069-13713088 None:intergenic 45.0%
TCAATTACGTGGGATGGTGA+TGG - chr5_2:13713252-13713271 Msa0758420:intron 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_2:13713416-13713435 Msa0758420:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_2:13713418-13713437 Msa0758420:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_2:13713434-13713453 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_2:13713458-13713477 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_2:13713458-13713477 Msa0758420:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_2:13713459-13713478 Msa0758420:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_2:13713515-13713534 None:intergenic 45.0%
! GAAGAGGAATTGTTGGCCTA+AGG - chr5_2:13713553-13713572 Msa0758420:intron 45.0%
! AATTGTTGGCCTAAGGTTCG+TGG - chr5_2:13713560-13713579 Msa0758420:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_2:13713628-13713647 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_2:13713689-13713708 Msa0758420:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_2:13713700-13713719 Msa0758420:CDS 45.0%
CTAGATGAAACCCAGAAGGA+AGG + chr5_2:13713949-13713968 None:intergenic 45.0%
TTCATACCTTGTCCAGGTAG+TGG - chr5_2:13714063-13714082 Msa0758420:five_prime_UTR 45.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_2:13711808-13711827 Msa0758420:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_2:13711822-13711841 Msa0758420:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_2:13711869-13711888 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_2:13711907-13711926 Msa0758420:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_2:13711997-13712016 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_2:13712044-13712063 Msa0758420:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_2:13712045-13712064 Msa0758420:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_2:13712187-13712206 Msa0758420:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_2:13712195-13712214 Msa0758420:CDS 50.0%
GTAGCACTAGCACCTACAGT+AGG - chr5_2:13712611-13712630 Msa0758420:intron 50.0%
! ACTTTGGTGGTTTGGGCATG+TGG - chr5_2:13712652-13712671 Msa0758420:intron 50.0%
! CGATCCCACATAGTGGGATA+AGG - chr5_2:13712853-13712872 Msa0758420:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG + chr5_2:13712861-13712880 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG - chr5_2:13712858-13712877 Msa0758420:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_2:13713470-13713489 Msa0758420:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_2:13713473-13713492 Msa0758420:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_2:13713506-13713525 Msa0758420:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_2:13713572-13713591 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_2:13713599-13713618 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_2:13713596-13713615 Msa0758420:CDS 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_2:13713599-13713618 Msa0758420:CDS 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_2:13713617-13713636 Msa0758420:CDS 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_2:13713674-13713693 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_2:13713699-13713718 Msa0758420:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_2:13713701-13713720 Msa0758420:CDS 50.0%
TTAATCGGCCTTAGCAGCAG+CGG + chr5_2:13713738-13713757 None:intergenic 50.0%
GCAGGATTCATACCTTGTCC+AGG - chr5_2:13714057-13714076 Msa0758420:five_prime_UTR 50.0%
CAACAACCACTACCTGGACA+AGG + chr5_2:13714072-13714091 None:intergenic 50.0%
! GTTTAGGTTTCCGGCGAGAT+GGG - chr5_2:13711808-13711827 Msa0758420:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_2:13711822-13711841 Msa0758420:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_2:13711869-13711888 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_2:13711907-13711926 Msa0758420:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_2:13711997-13712016 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_2:13712044-13712063 Msa0758420:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_2:13712045-13712064 Msa0758420:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_2:13712187-13712206 Msa0758420:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_2:13712195-13712214 Msa0758420:CDS 50.0%
GTAGCACTAGCACCTACAGT+AGG - chr5_2:13712611-13712630 Msa0758420:intron 50.0%
! ACTTTGGTGGTTTGGGCATG+TGG - chr5_2:13712652-13712671 Msa0758420:intron 50.0%
! CGATCCCACATAGTGGGATA+AGG - chr5_2:13712853-13712872 Msa0758420:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG + chr5_2:13712861-13712880 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG - chr5_2:13712858-13712877 Msa0758420:intron 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_2:13713470-13713489 Msa0758420:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_2:13713473-13713492 Msa0758420:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_2:13713506-13713525 Msa0758420:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_2:13713572-13713591 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_2:13713599-13713618 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_2:13713596-13713615 Msa0758420:CDS 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_2:13713599-13713618 Msa0758420:CDS 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_2:13713617-13713636 Msa0758420:CDS 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_2:13713674-13713693 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_2:13713699-13713718 Msa0758420:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_2:13713701-13713720 Msa0758420:CDS 50.0%
TTAATCGGCCTTAGCAGCAG+CGG + chr5_2:13713738-13713757 None:intergenic 50.0%
GCAGGATTCATACCTTGTCC+AGG - chr5_2:13714057-13714076 Msa0758420:five_prime_UTR 50.0%
CAACAACCACTACCTGGACA+AGG + chr5_2:13714072-13714091 None:intergenic 50.0%
CTACGACTCTAACCACCGTG+CGG + chr5_2:13711788-13711807 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_2:13711807-13711826 Msa0758420:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_2:13711821-13711840 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_2:13711821-13711840 Msa0758420:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_2:13711841-13711860 Msa0758420:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_2:13711967-13711986 Msa0758420:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+AGG - chr5_2:13712057-13712076 Msa0758420:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_2:13713476-13713495 Msa0758420:intron 55.0%
TTGGCCTAAGGTTCGTGGTG+TGG - chr5_2:13713565-13713584 Msa0758420:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_2:13713611-13713630 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_2:13713661-13713680 Msa0758420:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_2:13713671-13713690 None:intergenic 55.0%
CTACGACTCTAACCACCGTG+CGG + chr5_2:13711788-13711807 None:intergenic 55.0%
! GGTTTAGGTTTCCGGCGAGA+TGG - chr5_2:13711807-13711826 Msa0758420:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_2:13711821-13711840 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_2:13711821-13711840 Msa0758420:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_2:13711841-13711860 Msa0758420:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_2:13711967-13711986 Msa0758420:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+AGG - chr5_2:13712057-13712076 Msa0758420:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_2:13713476-13713495 Msa0758420:intron 55.0%
TTGGCCTAAGGTTCGTGGTG+TGG - chr5_2:13713565-13713584 Msa0758420:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_2:13713611-13713630 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_2:13713661-13713680 Msa0758420:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_2:13713671-13713690 None:intergenic 55.0%
TCCATATCATCGCCGCACGG+TGG - chr5_2:13711773-13711792 Msa0758420:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_2:13711777-13711796 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_2:13711786-13711805 Msa0758420:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_2:13711812-13711831 Msa0758420:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_2:13711813-13711832 Msa0758420:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_2:13711877-13711896 Msa0758420:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_2:13711881-13711900 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_2:13711887-13711906 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_2:13711891-13711910 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_2:13711903-13711922 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_2:13711904-13711923 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_2:13711984-13712003 Msa0758420:three_prime_UTR 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_2:13713653-13713672 Msa0758420:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_2:13713665-13713684 Msa0758420:CDS 60.0%
AGCTGCTTCCGCTGCTGCTA+AGG - chr5_2:13713727-13713746 Msa0758420:CDS 60.0%
TCCATATCATCGCCGCACGG+TGG - chr5_2:13711773-13711792 Msa0758420:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_2:13711777-13711796 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_2:13711786-13711805 Msa0758420:three_prime_UTR 60.0%
AGGTTTCCGGCGAGATGGGT+AGG - chr5_2:13711812-13711831 Msa0758420:three_prime_UTR 60.0%
GGTTTCCGGCGAGATGGGTA+GGG - chr5_2:13711813-13711832 Msa0758420:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_2:13711877-13711896 Msa0758420:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_2:13711881-13711900 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_2:13711887-13711906 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_2:13711891-13711910 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_2:13711903-13711922 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_2:13711904-13711923 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_2:13711984-13712003 Msa0758420:three_prime_UTR 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_2:13713653-13713672 Msa0758420:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_2:13713665-13713684 Msa0758420:CDS 60.0%
AGCTGCTTCCGCTGCTGCTA+AGG - chr5_2:13713727-13713746 Msa0758420:CDS 60.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_2:13711882-13711901 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_2:13711888-13711907 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_2:13711981-13712000 None:intergenic 65.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_2:13711882-13711901 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_2:13711888-13711907 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_2:13711981-13712000 None:intergenic 65.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_2:13711982-13712001 None:intergenic 70.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_2:13711982-13712001 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13711747 13714096 13711747 ID=Msa0758420;Name=Msa0758420
chr5_2 mRNA 13711747 13714096 13711747 ID=Msa0758420-mRNA-1;Parent=Msa0758420;Name=Msa0758420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|1|1|2|339|258
chr5_2 exon 13711747 13712422 13711747 ID=Msa0758420-mRNA-1:exon:6156;Parent=Msa0758420-mRNA-1
chr5_2 exon 13713578 13714096 13713578 ID=Msa0758420-mRNA-1:exon:6155;Parent=Msa0758420-mRNA-1
chr5_2 five_prime_UTR 13714018 13714096 13714018 ID=Msa0758420-mRNA-1:five_prime_utr;Parent=Msa0758420-mRNA-1
chr5_2 CDS 13713578 13714017 13713578 ID=Msa0758420-mRNA-1:cds;Parent=Msa0758420-mRNA-1
chr5_2 CDS 13712086 13712422 13712086 ID=Msa0758420-mRNA-1:cds;Parent=Msa0758420-mRNA-1
chr5_2 three_prime_UTR 13711747 13712085 13711747 ID=Msa0758420-mRNA-1:three_prime_utr;Parent=Msa0758420-mRNA-1
Gene Sequence

>Msa0758420

ATGGGTAGGGTTATCAGGGCACAACGTAAAGGAGCAGGCTCCGTTTTCAAGTCCCACACCCACCATCGCAAAGGCCCAGCACGTTTCCGCAGTCTCGATTTCGGTGAAAGAAACGGTTACCTGAAAGGAGTAGTGAACGAAATCATTCACGACCCAGGTCGCGGTGCACCACTAGCTAAGGTCACATTCCGACACCCTTTTAGATATAAGAAACAGAAAGAGCTTTTCGTTGCTGCTGAGGGACTTTACACAGGACAGTTTATTTATTGTGGGAAAAAAGCTACTCTTGTTGTTGGAAATGTTTTGCCATTAAGGATGATTCCTGAAGGTGCGGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACCTCTAGGATTAAGCTACCATCAGGGGCAAAGAAGATTGTTCCAAGTGAGTGCAGAGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCAATGCTTAAGGCTGGTAATGCTTACCACAAATTTAGGGTGAAGAGGAATTGTTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCATGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCTAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTTCCGCTGCTGCTAAGGCCGATTAA

Protein sequence

>Msa0758420

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIIHDPGRGAPLAKVTFRHPFRYKKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRMIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAAAKAD*