AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172440 MtrunA17_Chr1g0190651 95.172 145 7 0 8 152 1 145 1.63e-100 285
Msa0172440 MtrunA17_Chr1g0190671 89.583 144 15 0 8 151 1 144 1.57e-93 268
Msa0172440 MtrunA17_Chr1g0190661 84.028 144 23 0 8 151 1 144 3.65e-89 256
Msa0172440 MtrunA17_Chr7g0274181 70.000 120 36 0 36 155 69 188 7.02e-60 184
Msa0172440 MtrunA17_Chr1g0190641 58.696 138 56 1 15 152 4 140 1.95e-57 176
Msa0172440 MtrunA17_Chr6g0484021 52.866 157 53 5 17 156 31 183 4.78e-46 159
Msa0172440 MtrunA17_Chr6g0483971 52.555 137 58 3 17 151 11 142 1.66e-43 146
Msa0172440 MtrunA17_Chr6g0484031 48.592 142 61 3 18 152 10 146 4.60e-38 135
Msa0172440 MtrunA17_Chr6g0484041 49.333 150 56 5 17 151 23 167 3.75e-36 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172440 AT3G04720.1 65.468 139 48 0 31 169 71 209 1.41e-62 192

Find 114 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACAAACTTGGTGAAATT+TGG 0.126305 1_4:-57490968 Msa0172440:three_prime_UTR
ACATTACATTTAATATAATT+TGG 0.136403 1_4:+57490678 None:intergenic
GTAAACATAAATATATATTT+TGG 0.152642 1_4:+57491642 None:intergenic
CTATGAATCTATGGAGTTTA+TGG 0.152716 1_4:-57490853 Msa0172440:three_prime_UTR
AAAACATGCTCTGGTGTTTC+TGG 0.158281 1_4:+57491180 None:intergenic
AGATAAAATCTTTCAAATTT+AGG 0.161439 1_4:-57490909 Msa0172440:three_prime_UTR
TATATTTATGTTTACATAAT+TGG 0.179994 1_4:-57491634 Msa0172440:three_prime_UTR
GGAGTAGCAACTCATAAATT+TGG 0.190200 1_4:-57490829 Msa0172440:three_prime_UTR
GGTATATGTGCCTTTGTTTC+GGG 0.209498 1_4:+57491828 None:intergenic
CGGTATATGTGCCTTTGTTT+CGG 0.230641 1_4:+57491827 None:intergenic
CATGCGTTGGTAAACAATTT+CGG 0.256876 1_4:+57491087 None:intergenic
GAAACACACAAAAGAGAAAA+TGG 0.283121 1_4:-57492697 Msa0172440:CDS
ATGCGTTGGTAAACAATTTC+GGG 0.297876 1_4:+57491088 None:intergenic
CAATTGTCCATGGTGTAATA+TGG 0.306310 1_4:-57491205 Msa0172440:three_prime_UTR
TTGTCATGGCGTAGCAAATA+TGG 0.308099 1_4:-57492495 Msa0172440:CDS
TGCTGGCAGAATGGCGGACT+GGG 0.313087 1_4:-57490770 Msa0172440:three_prime_UTR
ACGCATTAGTAAACAATTTC+CGG 0.325047 1_4:+57491263 None:intergenic
GAATTCACTGTATGGTTTGC+AGG 0.331345 1_4:-57491385 Msa0172440:three_prime_UTR
TCTCTGCCTGTTGGCCCAGC+TGG 0.347389 1_4:+57492453 None:intergenic
ACAAAATTTCTCACCTTTGA+CGG 0.358366 1_4:+57491122 None:intergenic
CCAGCAAGCTGCTCTCTCTA+TGG 0.358450 1_4:+57490787 None:intergenic
ACAGAGAACTTTGAGCTTGT+TGG 0.365729 1_4:-57492667 Msa0172440:CDS
CGTATCTAAGACCCTAGGTT+AGG 0.376640 1_4:-57491722 Msa0172440:three_prime_UTR
CCATAGAGAGAGCAGCTTGC+TGG 0.377636 1_4:-57490787 Msa0172440:three_prime_UTR
ACAACCCTCAGAATATTAAC+TGG 0.383186 1_4:-57492569 Msa0172440:CDS
GTTAGTGTACATAGGTATAC+TGG 0.398676 1_4:+57491428 None:intergenic
GAGTAGCAACTCATAAATTT+GGG 0.400397 1_4:-57490828 Msa0172440:three_prime_UTR
TAACCGTAAGGTGACCCTTC+TGG 0.404448 1_4:+57492026 None:intergenic
TTGCTGGCAGAATGGCGGAC+TGG 0.405522 1_4:-57490771 Msa0172440:three_prime_UTR
GTATGTTTGCTATGAATCTA+TGG 0.413185 1_4:-57490862 Msa0172440:three_prime_UTR
AACATACACATATCCTCTTC+AGG 0.420105 1_4:+57490878 None:intergenic
TGTGGACCAGCTGGGCCAAC+AGG 0.421055 1_4:-57492459 Msa0172440:CDS
CACATTACACCAAGGACAAT+TGG 0.421991 1_4:+57491035 None:intergenic
CATATTACACCATGGACAAT+TGG 0.426552 1_4:+57491206 None:intergenic
GTCAGAGTGCAAACAACGTT+AGG 0.437077 1_4:-57492608 Msa0172440:CDS
CTTGGTGAAATTTGGATTTG+TGG 0.437981 1_4:-57490960 Msa0172440:three_prime_UTR
TGCAGCAGGCCAGGTTGTAT+TGG 0.447724 1_4:-57490710 Msa0172440:three_prime_UTR
CTTAATCCACTTGCAAAATG+AGG 0.449961 1_4:-57491514 Msa0172440:three_prime_UTR
CACTGCAGTAAAACATGCTC+TGG 0.450407 1_4:+57491171 None:intergenic
CCAGTGTATACTGTGCTACT+TGG 0.451011 1_4:-57492533 Msa0172440:CDS
TTAACTGAGAAGTGCATGTT+GGG 0.451185 1_4:-57491059 Msa0172440:three_prime_UTR
GTATCTAAGACCCTAGGTTA+GGG 0.452442 1_4:-57491721 Msa0172440:three_prime_UTR
TATGTATAGAATTCACTGTA+TGG 0.466417 1_4:-57491393 Msa0172440:three_prime_UTR
TCAAATTGATACCAATGGAC+AGG 0.479120 1_4:-57492053 Msa0172440:CDS
AACTATAGCTTTGTTAATTG+CGG 0.483092 1_4:-57492004 Msa0172440:CDS
ATCAGAACAGCATGTGCAGC+AGG 0.485363 1_4:-57490724 Msa0172440:three_prime_UTR
AACAGCATGTGCAGCAGGCC+AGG 0.486850 1_4:-57490719 Msa0172440:three_prime_UTR
ATCTAAGTCCAGTCCACCAT+TGG 0.492671 1_4:+57492090 None:intergenic
GAATACTGCAACTGGTGCTC+AGG 0.493434 1_4:-57492140 Msa0172440:CDS
TGCTACGCCATGACAAGGGC+TGG 0.498360 1_4:+57492502 None:intergenic
GGTGCACAAATTTATTGACT+TGG 0.500571 1_4:+57492733 None:intergenic
AGAGCAGCTTGCTGGCAGAA+TGG 0.507412 1_4:-57490779 Msa0172440:three_prime_UTR
ATTAACTAATAAAGAAGTGC+AGG 0.507677 1_4:-57491235 Msa0172440:three_prime_UTR
CAAGTGCTCCAATGGTGGAC+TGG 0.511136 1_4:-57492098 Msa0172440:CDS
AATGTAGCAATCAGCTCAAA+CGG 0.513795 1_4:-57491895 Msa0172440:three_prime_UTR
CTAATAAAGAAGTGCAGGAT+GGG 0.523391 1_4:-57491230 Msa0172440:three_prime_UTR
CAGGTGACGAATACTGCAAC+TGG 0.524837 1_4:-57492148 Msa0172440:CDS
GTGATTTATTGACTCATCAC+TGG 0.525214 1_4:-57491979 Msa0172440:CDS
CCGCAAGAATCTCTGCCTGT+TGG 0.525418 1_4:+57492444 None:intergenic
TGGCCCAGCTGGTCCACAAA+AGG 0.525504 1_4:+57492464 None:intergenic
TTACCAGAAGGGTCACCTTA+CGG 0.525799 1_4:-57492029 Msa0172440:CDS
CAGTGTATACTGTGCTACTT+GGG 0.526139 1_4:-57492532 Msa0172440:CDS
ATGATTTCGCACTTGTACGC+AGG 0.527382 1_4:+57491786 None:intergenic
TTAGGATGTTCTTCCTGAAG+AGG 0.527805 1_4:-57490891 Msa0172440:three_prime_UTR
TCCTTGGTGTAATGTGGAGC+TGG 0.536230 1_4:-57491028 Msa0172440:three_prime_UTR
TAAGTAAAGTTAGTGTACAT+AGG 0.539496 1_4:+57491420 None:intergenic
TTCAATCAAATTGATACCAA+TGG 0.541175 1_4:-57492058 Msa0172440:CDS
CTTCTGGTAACCCTGTCCAT+TGG 0.545362 1_4:+57492042 None:intergenic
ATGTTGGGACCAATTGTCCT+TGG 0.553024 1_4:-57491044 Msa0172440:three_prime_UTR
TAATCCCAGTTAATATTCTG+AGG 0.556889 1_4:+57492564 None:intergenic
ATCTTCCACTAACATTGTAC+AGG 0.557897 1_4:+57491312 None:intergenic
ACTAATAAAGAAGTGCAGGA+TGG 0.559173 1_4:-57491231 Msa0172440:three_prime_UTR
ATTAACTGAGAAGTGCATGT+TGG 0.560742 1_4:-57491060 Msa0172440:three_prime_UTR
AATGGACAGGGTTACCAGAA+GGG 0.563174 1_4:-57492040 Msa0172440:CDS
AAGACTTGCAGTGCCGTCAA+AGG 0.564665 1_4:-57491135 Msa0172440:three_prime_UTR
TTACATTTAATATAATTTGG+AGG 0.566301 1_4:+57490681 None:intergenic
TTAATCCACTTGCAAAATGA+GGG 0.566597 1_4:-57491513 Msa0172440:three_prime_UTR
TGCAACTGGTGCTCAGGTAA+CGG 0.577038 1_4:-57492134 Msa0172440:CDS
TCAGAGTGCAAACAACGTTA+GGG 0.580216 1_4:-57492607 Msa0172440:CDS
CAAAGCTATAGTTAACCGTA+AGG 0.581296 1_4:+57492014 None:intergenic
CAACCCTCAGAATATTAACT+GGG 0.582070 1_4:-57492568 Msa0172440:CDS
ATAGTGGACAAGTGCTCCAA+TGG 0.583102 1_4:-57492106 Msa0172440:CDS
ATGCAAACCAGCCCTTGTCA+TGG 0.583448 1_4:-57492509 Msa0172440:CDS
ATATTTGCTACGCCATGACA+AGG 0.584472 1_4:+57492497 None:intergenic
AGGAAGTTGCCAATACAACC+TGG 0.588413 1_4:+57490701 None:intergenic
CAATTGTCCTTGGTGTAATG+TGG 0.590297 1_4:-57491034 Msa0172440:three_prime_UTR
CAAATTGATACCAATGGACA+GGG 0.591064 1_4:-57492052 Msa0172440:CDS
GCAGCTTGCTGGCAGAATGG+CGG 0.591677 1_4:-57490776 Msa0172440:three_prime_UTR
GTAATAATAGTATACAAACT+TGG 0.596249 1_4:-57490978 Msa0172440:three_prime_UTR
TCAATTCACGTTGACTTACG+TGG 0.599511 1_4:+57491454 None:intergenic
CATGGCGTAGCAAATATGGT+TGG 0.604474 1_4:-57492491 Msa0172440:CDS
TCAGGTAACGGTGAGAATAG+TGG 0.610066 1_4:-57492122 Msa0172440:CDS
TGTGTTTCATAGTAGAAGCA+TGG 0.611414 1_4:+57492712 None:intergenic
TATAGCTTTGTTAATTGCGG+CGG 0.615079 1_4:-57492001 Msa0172440:CDS
CAATGGACAGGGTTACCAGA+AGG 0.617429 1_4:-57492041 Msa0172440:CDS
ATCTAAGACCCTAGGTTAGG+GGG 0.617950 1_4:-57491719 Msa0172440:three_prime_UTR
TTAAAAGAAACCCGAAACAA+AGG 0.621655 1_4:-57491838 Msa0172440:three_prime_UTR
TAGGGTCTTAGATACGCCGC+TGG 0.623707 1_4:+57491729 None:intergenic
GTGGACAAGTGCTCCAATGG+TGG 0.625188 1_4:-57492103 Msa0172440:CDS
AATCCCAGTTAATATTCTGA+GGG 0.629321 1_4:+57492565 None:intergenic
TGAATCTATGGAGTTTATGG+AGG 0.638039 1_4:-57490850 Msa0172440:three_prime_UTR
TATCTAAGACCCTAGGTTAG+GGG 0.645324 1_4:-57491720 Msa0172440:three_prime_UTR
ATGTGAACATTCACGTCCAG+CGG 0.654233 1_4:-57491745 Msa0172440:three_prime_UTR
AGGATGGGACCAATTGTCCA+TGG 0.656111 1_4:-57491215 Msa0172440:three_prime_UTR
CCAAGTAGCACAGTATACAC+TGG 0.657659 1_4:+57492533 None:intergenic
TCACTAGCATCGTTCCCACA+AGG 0.659432 1_4:+57492634 None:intergenic
AGCGGCGTATCTAAGACCCT+AGG 0.659664 1_4:-57491727 Msa0172440:three_prime_UTR
TATTTGCTACGCCATGACAA+GGG 0.664421 1_4:+57492498 None:intergenic
CCAACAGGCAGAGATTCTTG+CGG 0.667208 1_4:-57492444 Msa0172440:CDS
GTACAAGTGCGAAATCATGT+AGG 0.668009 1_4:-57491781 Msa0172440:three_prime_UTR
TCCAGCTCCACATTACACCA+AGG 0.686873 1_4:+57491027 None:intergenic
TCTGGCTCCATATTACACCA+TGG 0.697603 1_4:+57491198 None:intergenic
GGTTCACTAGATAGTGCATG+CGG 0.724459 1_4:+57491807 None:intergenic
GTGGGAACGATGCTAGTGAG+TGG 0.745826 1_4:-57492630 Msa0172440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATTAAAAGTTATAT+AGG + chr1_4:57491729-57491748 None:intergenic 10.0%
!!! GTAAACATAAATATATATTT+TGG + chr1_4:57491768-57491787 None:intergenic 10.0%
!! TATATTTATGTTTACATAAT+TGG - chr1_4:57491773-57491792 Msa0172440:three_prime_UTR 10.0%
!! ACATTACATTTAATATAATT+TGG + chr1_4:57492732-57492751 None:intergenic 10.0%
!! GAAAAAATTAAAAGTTATAT+AGG + chr1_4:57491729-57491748 None:intergenic 10.0%
!!! GTAAACATAAATATATATTT+TGG + chr1_4:57491768-57491787 None:intergenic 10.0%
!! TATATTTATGTTTACATAAT+TGG - chr1_4:57491773-57491792 Msa0172440:three_prime_UTR 10.0%
!! ACATTACATTTAATATAATT+TGG + chr1_4:57492732-57492751 None:intergenic 10.0%
!!! AACATAAATATATATTTTGG+AGG + chr1_4:57491765-57491784 None:intergenic 15.0%
!!! TATTTATTTTGTCTAAAGAA+TGG - chr1_4:57492121-57492140 Msa0172440:CDS 15.0%
!!! AATTTGAAAGATTTTATCTA+CGG + chr1_4:57492497-57492516 None:intergenic 15.0%
!! AGATAAAATCTTTCAAATTT+AGG - chr1_4:57492498-57492517 Msa0172440:CDS 15.0%
!! TTACATTTAATATAATTTGG+AGG + chr1_4:57492729-57492748 None:intergenic 15.0%
!!! AACATAAATATATATTTTGG+AGG + chr1_4:57491765-57491784 None:intergenic 15.0%
!!! TATTTATTTTGTCTAAAGAA+TGG - chr1_4:57492121-57492140 Msa0172440:CDS 15.0%
!!! AATTTGAAAGATTTTATCTA+CGG + chr1_4:57492497-57492516 None:intergenic 15.0%
!! AGATAAAATCTTTCAAATTT+AGG - chr1_4:57492498-57492517 Msa0172440:CDS 15.0%
!! TTACATTTAATATAATTTGG+AGG + chr1_4:57492729-57492748 None:intergenic 15.0%
!! ACAACTACTAAATCAAAAAA+TGG + chr1_4:57491133-57491152 None:intergenic 20.0%
!! TTCAATTAATGATAGTATTG+TGG - chr1_4:57491221-57491240 Msa0172440:three_prime_UTR 20.0%
!!! TGCTACATTAGTTTTATTTA+CGG + chr1_4:57491501-57491520 None:intergenic 20.0%
!!! TTTTTAATATCTCTGGTTAT+TGG - chr1_4:57491832-57491851 Msa0172440:three_prime_UTR 20.0%
!! GTAATAATAGTATACAAACT+TGG - chr1_4:57492429-57492448 Msa0172440:intron 20.0%
!! ACAACTACTAAATCAAAAAA+TGG + chr1_4:57491133-57491152 None:intergenic 20.0%
!! TTCAATTAATGATAGTATTG+TGG - chr1_4:57491221-57491240 Msa0172440:three_prime_UTR 20.0%
!!! TGCTACATTAGTTTTATTTA+CGG + chr1_4:57491501-57491520 None:intergenic 20.0%
!!! TTTTTAATATCTCTGGTTAT+TGG - chr1_4:57491832-57491851 Msa0172440:three_prime_UTR 20.0%
!! GTAATAATAGTATACAAACT+TGG - chr1_4:57492429-57492448 Msa0172440:intron 20.0%
!! TCACTAGATTTCTTCATTTT+GGG - chr1_4:57491107-57491126 Msa0172440:three_prime_UTR 25.0%
! TTCAATCAAATTGATACCAA+TGG - chr1_4:57491349-57491368 Msa0172440:three_prime_UTR 25.0%
!!! AACTATAGCTTTGTTAATTG+CGG - chr1_4:57491403-57491422 Msa0172440:three_prime_UTR 25.0%
!!! CTACATTAGTTTTATTTACG+GGG + chr1_4:57491499-57491518 None:intergenic 25.0%
!!! GCTACATTAGTTTTATTTAC+GGG + chr1_4:57491500-57491519 None:intergenic 25.0%
!!! TGCTTCATTTTTAATATCTC+TGG - chr1_4:57491825-57491844 Msa0172440:three_prime_UTR 25.0%
! TAAGTAAAGTTAGTGTACAT+AGG + chr1_4:57491990-57492009 None:intergenic 25.0%
! TATGTATAGAATTCACTGTA+TGG - chr1_4:57492014-57492033 Msa0172440:CDS 25.0%
!! ATTAACTAATAAAGAAGTGC+AGG - chr1_4:57492172-57492191 Msa0172440:intron 25.0%
!! TATACAAACTTGGTGAAATT+TGG - chr1_4:57492439-57492458 Msa0172440:CDS 25.0%
!! TCACTAGATTTCTTCATTTT+GGG - chr1_4:57491107-57491126 Msa0172440:three_prime_UTR 25.0%
! TTCAATCAAATTGATACCAA+TGG - chr1_4:57491349-57491368 Msa0172440:three_prime_UTR 25.0%
!!! AACTATAGCTTTGTTAATTG+CGG - chr1_4:57491403-57491422 Msa0172440:three_prime_UTR 25.0%
!!! CTACATTAGTTTTATTTACG+GGG + chr1_4:57491499-57491518 None:intergenic 25.0%
!!! GCTACATTAGTTTTATTTAC+GGG + chr1_4:57491500-57491519 None:intergenic 25.0%
!!! TGCTTCATTTTTAATATCTC+TGG - chr1_4:57491825-57491844 Msa0172440:three_prime_UTR 25.0%
! TAAGTAAAGTTAGTGTACAT+AGG + chr1_4:57491990-57492009 None:intergenic 25.0%
! TATGTATAGAATTCACTGTA+TGG - chr1_4:57492014-57492033 Msa0172440:CDS 25.0%
!! ATTAACTAATAAAGAAGTGC+AGG - chr1_4:57492172-57492191 Msa0172440:intron 25.0%
!! TATACAAACTTGGTGAAATT+TGG - chr1_4:57492439-57492458 Msa0172440:CDS 25.0%
GAAACACACAAAAGAGAAAA+TGG - chr1_4:57490710-57490729 Msa0172440:three_prime_UTR 30.0%
AATCCCAGTTAATATTCTGA+GGG + chr1_4:57490845-57490864 None:intergenic 30.0%
TAATCCCAGTTAATATTCTG+AGG + chr1_4:57490846-57490865 None:intergenic 30.0%
!! TTTCTCTAAAATGAGAGAAG+TGG + chr1_4:57491008-57491027 None:intergenic 30.0%
! CTCACTAGATTTCTTCATTT+TGG - chr1_4:57491106-57491125 Msa0172440:three_prime_UTR 30.0%
! ATTCTCTTTGACTAGCTAAT+TGG + chr1_4:57491182-57491201 None:intergenic 30.0%
GAGTACAACTACAACAAAAA+TGG - chr1_4:57491545-57491564 Msa0172440:three_prime_UTR 30.0%
TTAAAAGAAACCCGAAACAA+AGG - chr1_4:57491569-57491588 Msa0172440:three_prime_UTR 30.0%
TTAATCCACTTGCAAAATGA+GGG - chr1_4:57491894-57491913 Msa0172440:three_prime_UTR 30.0%
! ATTTTCCTGTACAATGTTAG+TGG - chr1_4:57492090-57492109 Msa0172440:CDS 30.0%
! TATTTTGTCTAAAGAATGGC+CGG - chr1_4:57492125-57492144 Msa0172440:CDS 30.0%
ACGCATTAGTAAACAATTTC+CGG + chr1_4:57492147-57492166 None:intergenic 30.0%
ACAAAATTTCTCACCTTTGA+CGG + chr1_4:57492288-57492307 None:intergenic 30.0%
! CAAAGGTGAGAAATTTTGTA+TGG - chr1_4:57492289-57492308 Msa0172440:intron 30.0%
! TCAGTTAATTTTACATGCGT+TGG + chr1_4:57492336-57492355 None:intergenic 30.0%
!! GTATGTTTGCTATGAATCTA+TGG - chr1_4:57492545-57492564 Msa0172440:CDS 30.0%
CTATGAATCTATGGAGTTTA+TGG - chr1_4:57492554-57492573 Msa0172440:CDS 30.0%
GAGTAGCAACTCATAAATTT+GGG - chr1_4:57492579-57492598 Msa0172440:CDS 30.0%
GAAACACACAAAAGAGAAAA+TGG - chr1_4:57490710-57490729 Msa0172440:three_prime_UTR 30.0%
AATCCCAGTTAATATTCTGA+GGG + chr1_4:57490845-57490864 None:intergenic 30.0%
TAATCCCAGTTAATATTCTG+AGG + chr1_4:57490846-57490865 None:intergenic 30.0%
!! TTTCTCTAAAATGAGAGAAG+TGG + chr1_4:57491008-57491027 None:intergenic 30.0%
! CTCACTAGATTTCTTCATTT+TGG - chr1_4:57491106-57491125 Msa0172440:three_prime_UTR 30.0%
! ATTCTCTTTGACTAGCTAAT+TGG + chr1_4:57491182-57491201 None:intergenic 30.0%
GAGTACAACTACAACAAAAA+TGG - chr1_4:57491545-57491564 Msa0172440:three_prime_UTR 30.0%
TTAAAAGAAACCCGAAACAA+AGG - chr1_4:57491569-57491588 Msa0172440:three_prime_UTR 30.0%
TTAATCCACTTGCAAAATGA+GGG - chr1_4:57491894-57491913 Msa0172440:three_prime_UTR 30.0%
! ATTTTCCTGTACAATGTTAG+TGG - chr1_4:57492090-57492109 Msa0172440:CDS 30.0%
! TATTTTGTCTAAAGAATGGC+CGG - chr1_4:57492125-57492144 Msa0172440:CDS 30.0%
ACGCATTAGTAAACAATTTC+CGG + chr1_4:57492147-57492166 None:intergenic 30.0%
ACAAAATTTCTCACCTTTGA+CGG + chr1_4:57492288-57492307 None:intergenic 30.0%
! CAAAGGTGAGAAATTTTGTA+TGG - chr1_4:57492289-57492308 Msa0172440:intron 30.0%
! TCAGTTAATTTTACATGCGT+TGG + chr1_4:57492336-57492355 None:intergenic 30.0%
!! GTATGTTTGCTATGAATCTA+TGG - chr1_4:57492545-57492564 Msa0172440:CDS 30.0%
CTATGAATCTATGGAGTTTA+TGG - chr1_4:57492554-57492573 Msa0172440:CDS 30.0%
GAGTAGCAACTCATAAATTT+GGG - chr1_4:57492579-57492598 Msa0172440:CDS 30.0%
! GGTGCACAAATTTATTGACT+TGG + chr1_4:57490677-57490696 None:intergenic 35.0%
TGTGTTTCATAGTAGAAGCA+TGG + chr1_4:57490698-57490717 None:intergenic 35.0%
!!! TTGGTTTTGTGTTTCCTTGT+GGG - chr1_4:57490759-57490778 Msa0172440:three_prime_UTR 35.0%
ACAACCCTCAGAATATTAAC+TGG - chr1_4:57490838-57490857 Msa0172440:three_prime_UTR 35.0%
CAACCCTCAGAATATTAACT+GGG - chr1_4:57490839-57490858 Msa0172440:three_prime_UTR 35.0%
!! TGTGTTGGTCAGATTTTAGA+GGG + chr1_4:57491084-57491103 None:intergenic 35.0%
!! TTGTGTTGGTCAGATTTTAG+AGG + chr1_4:57491085-57491104 None:intergenic 35.0%
GAAATCTAGTGAGTTTGTGT+TGG + chr1_4:57491099-57491118 None:intergenic 35.0%
TAGCTAGTCAAAGAGAATTG+TGG - chr1_4:57491184-57491203 Msa0172440:three_prime_UTR 35.0%
TCAAATTGATACCAATGGAC+AGG - chr1_4:57491354-57491373 Msa0172440:three_prime_UTR 35.0%
CAAATTGATACCAATGGACA+GGG - chr1_4:57491355-57491374 Msa0172440:three_prime_UTR 35.0%
CAAAGCTATAGTTAACCGTA+AGG + chr1_4:57491396-57491415 None:intergenic 35.0%
!! TATAGCTTTGTTAATTGCGG+CGG - chr1_4:57491406-57491425 Msa0172440:three_prime_UTR 35.0%
!! GTGATTTATTGACTCATCAC+TGG - chr1_4:57491428-57491447 Msa0172440:three_prime_UTR 35.0%
AATGTAGCAATCAGCTCAAA+CGG - chr1_4:57491512-57491531 Msa0172440:three_prime_UTR 35.0%
CTTAATCCACTTGCAAAATG+AGG - chr1_4:57491893-57491912 Msa0172440:three_prime_UTR 35.0%
GTTAGTGTACATAGGTATAC+TGG + chr1_4:57491982-57492001 None:intergenic 35.0%
ATCTTCCACTAACATTGTAC+AGG + chr1_4:57492098-57492117 None:intergenic 35.0%
! ACTAATAAAGAAGTGCAGGA+TGG - chr1_4:57492176-57492195 Msa0172440:intron 35.0%
! CTAATAAAGAAGTGCAGGAT+GGG - chr1_4:57492177-57492196 Msa0172440:intron 35.0%
CATATTACACCATGGACAAT+TGG + chr1_4:57492204-57492223 None:intergenic 35.0%
CAATTGTCCATGGTGTAATA+TGG - chr1_4:57492202-57492221 Msa0172440:intron 35.0%
! GAGAAATTTTGTATGGAGAG+TGG - chr1_4:57492296-57492315 Msa0172440:intron 35.0%
! ATGCGTTGGTAAACAATTTC+GGG + chr1_4:57492322-57492341 None:intergenic 35.0%
! CATGCGTTGGTAAACAATTT+CGG + chr1_4:57492323-57492342 None:intergenic 35.0%
! ATTAACTGAGAAGTGCATGT+TGG - chr1_4:57492347-57492366 Msa0172440:intron 35.0%
! TTAACTGAGAAGTGCATGTT+GGG - chr1_4:57492348-57492367 Msa0172440:intron 35.0%
CTTGGTGAAATTTGGATTTG+TGG - chr1_4:57492447-57492466 Msa0172440:CDS 35.0%
AACATACACATATCCTCTTC+AGG + chr1_4:57492532-57492551 None:intergenic 35.0%
TGAATCTATGGAGTTTATGG+AGG - chr1_4:57492557-57492576 Msa0172440:CDS 35.0%
GGAGTAGCAACTCATAAATT+TGG - chr1_4:57492578-57492597 Msa0172440:CDS 35.0%
! GGTGCACAAATTTATTGACT+TGG + chr1_4:57490677-57490696 None:intergenic 35.0%
TGTGTTTCATAGTAGAAGCA+TGG + chr1_4:57490698-57490717 None:intergenic 35.0%
!!! TTGGTTTTGTGTTTCCTTGT+GGG - chr1_4:57490759-57490778 Msa0172440:three_prime_UTR 35.0%
ACAACCCTCAGAATATTAAC+TGG - chr1_4:57490838-57490857 Msa0172440:three_prime_UTR 35.0%
CAACCCTCAGAATATTAACT+GGG - chr1_4:57490839-57490858 Msa0172440:three_prime_UTR 35.0%
!! TGTGTTGGTCAGATTTTAGA+GGG + chr1_4:57491084-57491103 None:intergenic 35.0%
!! TTGTGTTGGTCAGATTTTAG+AGG + chr1_4:57491085-57491104 None:intergenic 35.0%
GAAATCTAGTGAGTTTGTGT+TGG + chr1_4:57491099-57491118 None:intergenic 35.0%
TAGCTAGTCAAAGAGAATTG+TGG - chr1_4:57491184-57491203 Msa0172440:three_prime_UTR 35.0%
TCAAATTGATACCAATGGAC+AGG - chr1_4:57491354-57491373 Msa0172440:three_prime_UTR 35.0%
CAAATTGATACCAATGGACA+GGG - chr1_4:57491355-57491374 Msa0172440:three_prime_UTR 35.0%
CAAAGCTATAGTTAACCGTA+AGG + chr1_4:57491396-57491415 None:intergenic 35.0%
!! TATAGCTTTGTTAATTGCGG+CGG - chr1_4:57491406-57491425 Msa0172440:three_prime_UTR 35.0%
!! GTGATTTATTGACTCATCAC+TGG - chr1_4:57491428-57491447 Msa0172440:three_prime_UTR 35.0%
AATGTAGCAATCAGCTCAAA+CGG - chr1_4:57491512-57491531 Msa0172440:three_prime_UTR 35.0%
CTTAATCCACTTGCAAAATG+AGG - chr1_4:57491893-57491912 Msa0172440:three_prime_UTR 35.0%
GTTAGTGTACATAGGTATAC+TGG + chr1_4:57491982-57492001 None:intergenic 35.0%
ATCTTCCACTAACATTGTAC+AGG + chr1_4:57492098-57492117 None:intergenic 35.0%
! ACTAATAAAGAAGTGCAGGA+TGG - chr1_4:57492176-57492195 Msa0172440:intron 35.0%
! CTAATAAAGAAGTGCAGGAT+GGG - chr1_4:57492177-57492196 Msa0172440:intron 35.0%
CATATTACACCATGGACAAT+TGG + chr1_4:57492204-57492223 None:intergenic 35.0%
CAATTGTCCATGGTGTAATA+TGG - chr1_4:57492202-57492221 Msa0172440:intron 35.0%
! GAGAAATTTTGTATGGAGAG+TGG - chr1_4:57492296-57492315 Msa0172440:intron 35.0%
! ATGCGTTGGTAAACAATTTC+GGG + chr1_4:57492322-57492341 None:intergenic 35.0%
! CATGCGTTGGTAAACAATTT+CGG + chr1_4:57492323-57492342 None:intergenic 35.0%
! ATTAACTGAGAAGTGCATGT+TGG - chr1_4:57492347-57492366 Msa0172440:intron 35.0%
! TTAACTGAGAAGTGCATGTT+GGG - chr1_4:57492348-57492367 Msa0172440:intron 35.0%
CTTGGTGAAATTTGGATTTG+TGG - chr1_4:57492447-57492466 Msa0172440:CDS 35.0%
AACATACACATATCCTCTTC+AGG + chr1_4:57492532-57492551 None:intergenic 35.0%
TGAATCTATGGAGTTTATGG+AGG - chr1_4:57492557-57492576 Msa0172440:CDS 35.0%
GGAGTAGCAACTCATAAATT+TGG - chr1_4:57492578-57492597 Msa0172440:CDS 35.0%
ACAGAGAACTTTGAGCTTGT+TGG - chr1_4:57490740-57490759 Msa0172440:three_prime_UTR 40.0%
!!! GTTGGTTTTGTGTTTCCTTG+TGG - chr1_4:57490758-57490777 Msa0172440:three_prime_UTR 40.0%
TCAGAGTGCAAACAACGTTA+GGG - chr1_4:57490800-57490819 Msa0172440:three_prime_UTR 40.0%
!! CAGTGTATACTGTGCTACTT+GGG - chr1_4:57490875-57490894 Msa0172440:three_prime_UTR 40.0%
! TATTTGCTACGCCATGACAA+GGG + chr1_4:57490912-57490931 None:intergenic 40.0%
! ATATTTGCTACGCCATGACA+AGG + chr1_4:57490913-57490932 None:intergenic 40.0%
TTGTCATGGCGTAGCAAATA+TGG - chr1_4:57490912-57490931 Msa0172440:three_prime_UTR 40.0%
! GGTATATGTGCCTTTGTTTC+GGG + chr1_4:57491582-57491601 None:intergenic 40.0%
! CGGTATATGTGCCTTTGTTT+CGG + chr1_4:57491583-57491602 None:intergenic 40.0%
GTACAAGTGCGAAATCATGT+AGG - chr1_4:57491626-57491645 Msa0172440:three_prime_UTR 40.0%
! GTATCTAAGACCCTAGGTTA+GGG - chr1_4:57491686-57491705 Msa0172440:three_prime_UTR 40.0%
! TATCTAAGACCCTAGGTTAG+GGG - chr1_4:57491687-57491706 Msa0172440:three_prime_UTR 40.0%
!! TTTTGGAGGACTAAAGTGTG+AGG + chr1_4:57491751-57491770 None:intergenic 40.0%
!! TCAATTCACGTTGACTTACG+TGG + chr1_4:57491956-57491975 None:intergenic 40.0%
! GAATTCACTGTATGGTTTGC+AGG - chr1_4:57492022-57492041 Msa0172440:CDS 40.0%
AAAACATGCTCTGGTGTTTC+TGG + chr1_4:57492230-57492249 None:intergenic 40.0%
CACATTACACCAAGGACAAT+TGG + chr1_4:57492375-57492394 None:intergenic 40.0%
! CAATTGTCCTTGGTGTAATG+TGG - chr1_4:57492373-57492392 Msa0172440:intron 40.0%
TTAGGATGTTCTTCCTGAAG+AGG - chr1_4:57492516-57492535 Msa0172440:CDS 40.0%
ACAGAGAACTTTGAGCTTGT+TGG - chr1_4:57490740-57490759 Msa0172440:three_prime_UTR 40.0%
!!! GTTGGTTTTGTGTTTCCTTG+TGG - chr1_4:57490758-57490777 Msa0172440:three_prime_UTR 40.0%
TCAGAGTGCAAACAACGTTA+GGG - chr1_4:57490800-57490819 Msa0172440:three_prime_UTR 40.0%
!! CAGTGTATACTGTGCTACTT+GGG - chr1_4:57490875-57490894 Msa0172440:three_prime_UTR 40.0%
! TATTTGCTACGCCATGACAA+GGG + chr1_4:57490912-57490931 None:intergenic 40.0%
! ATATTTGCTACGCCATGACA+AGG + chr1_4:57490913-57490932 None:intergenic 40.0%
TTGTCATGGCGTAGCAAATA+TGG - chr1_4:57490912-57490931 Msa0172440:three_prime_UTR 40.0%
! GGTATATGTGCCTTTGTTTC+GGG + chr1_4:57491582-57491601 None:intergenic 40.0%
! CGGTATATGTGCCTTTGTTT+CGG + chr1_4:57491583-57491602 None:intergenic 40.0%
GTACAAGTGCGAAATCATGT+AGG - chr1_4:57491626-57491645 Msa0172440:three_prime_UTR 40.0%
! GTATCTAAGACCCTAGGTTA+GGG - chr1_4:57491686-57491705 Msa0172440:three_prime_UTR 40.0%
! TATCTAAGACCCTAGGTTAG+GGG - chr1_4:57491687-57491706 Msa0172440:three_prime_UTR 40.0%
!! TTTTGGAGGACTAAAGTGTG+AGG + chr1_4:57491751-57491770 None:intergenic 40.0%
!! TCAATTCACGTTGACTTACG+TGG + chr1_4:57491956-57491975 None:intergenic 40.0%
! GAATTCACTGTATGGTTTGC+AGG - chr1_4:57492022-57492041 Msa0172440:CDS 40.0%
AAAACATGCTCTGGTGTTTC+TGG + chr1_4:57492230-57492249 None:intergenic 40.0%
CACATTACACCAAGGACAAT+TGG + chr1_4:57492375-57492394 None:intergenic 40.0%
! CAATTGTCCTTGGTGTAATG+TGG - chr1_4:57492373-57492392 Msa0172440:intron 40.0%
TTAGGATGTTCTTCCTGAAG+AGG - chr1_4:57492516-57492535 Msa0172440:CDS 40.0%
GTCAGAGTGCAAACAACGTT+AGG - chr1_4:57490799-57490818 Msa0172440:three_prime_UTR 45.0%
CCAAGTAGCACAGTATACAC+TGG + chr1_4:57490877-57490896 None:intergenic 45.0%
! CCAGTGTATACTGTGCTACT+TGG - chr1_4:57490874-57490893 Msa0172440:three_prime_UTR 45.0%
CATGGCGTAGCAAATATGGT+TGG - chr1_4:57490916-57490935 Msa0172440:three_prime_UTR 45.0%
! TATGGTTGGACTGCCTTTTG+TGG - chr1_4:57490930-57490949 Msa0172440:three_prime_UTR 45.0%
GTATTCGTCACCTGCATCAT+CGG + chr1_4:57491253-57491272 None:intergenic 45.0%
! TCAGGTAACGGTGAGAATAG+TGG - chr1_4:57491285-57491304 Msa0172440:three_prime_UTR 45.0%
!! ATAGTGGACAAGTGCTCCAA+TGG - chr1_4:57491301-57491320 Msa0172440:three_prime_UTR 45.0%
ATCTAAGTCCAGTCCACCAT+TGG + chr1_4:57491320-57491339 None:intergenic 45.0%
AATGGACAGGGTTACCAGAA+GGG - chr1_4:57491367-57491386 Msa0172440:three_prime_UTR 45.0%
TTACCAGAAGGGTCACCTTA+CGG - chr1_4:57491378-57491397 Msa0172440:three_prime_UTR 45.0%
GGTTCACTAGATAGTGCATG+CGG + chr1_4:57491603-57491622 None:intergenic 45.0%
ATGATTTCGCACTTGTACGC+AGG + chr1_4:57491624-57491643 None:intergenic 45.0%
ATGTGAACATTCACGTCCAG+CGG - chr1_4:57491662-57491681 Msa0172440:three_prime_UTR 45.0%
! CGTATCTAAGACCCTAGGTT+AGG - chr1_4:57491685-57491704 Msa0172440:three_prime_UTR 45.0%
! ATCTAAGACCCTAGGTTAGG+GGG - chr1_4:57491688-57491707 Msa0172440:three_prime_UTR 45.0%
! GTATGCCCTCATTTTGCAAG+TGG + chr1_4:57491902-57491921 None:intergenic 45.0%
! TCTGGCTCCATATTACACCA+TGG + chr1_4:57492212-57492231 None:intergenic 45.0%
CACTGCAGTAAAACATGCTC+TGG + chr1_4:57492239-57492258 None:intergenic 45.0%
ATGTTGGGACCAATTGTCCT+TGG - chr1_4:57492363-57492382 Msa0172440:intron 45.0%
AGGAAGTTGCCAATACAACC+TGG + chr1_4:57492709-57492728 None:intergenic 45.0%
GTCAGAGTGCAAACAACGTT+AGG - chr1_4:57490799-57490818 Msa0172440:three_prime_UTR 45.0%
CCAAGTAGCACAGTATACAC+TGG + chr1_4:57490877-57490896 None:intergenic 45.0%
! CCAGTGTATACTGTGCTACT+TGG - chr1_4:57490874-57490893 Msa0172440:three_prime_UTR 45.0%
CATGGCGTAGCAAATATGGT+TGG - chr1_4:57490916-57490935 Msa0172440:three_prime_UTR 45.0%
! TATGGTTGGACTGCCTTTTG+TGG - chr1_4:57490930-57490949 Msa0172440:three_prime_UTR 45.0%
GTATTCGTCACCTGCATCAT+CGG + chr1_4:57491253-57491272 None:intergenic 45.0%
! TCAGGTAACGGTGAGAATAG+TGG - chr1_4:57491285-57491304 Msa0172440:three_prime_UTR 45.0%
!! ATAGTGGACAAGTGCTCCAA+TGG - chr1_4:57491301-57491320 Msa0172440:three_prime_UTR 45.0%
ATCTAAGTCCAGTCCACCAT+TGG + chr1_4:57491320-57491339 None:intergenic 45.0%
AATGGACAGGGTTACCAGAA+GGG - chr1_4:57491367-57491386 Msa0172440:three_prime_UTR 45.0%
TTACCAGAAGGGTCACCTTA+CGG - chr1_4:57491378-57491397 Msa0172440:three_prime_UTR 45.0%
GGTTCACTAGATAGTGCATG+CGG + chr1_4:57491603-57491622 None:intergenic 45.0%
ATGATTTCGCACTTGTACGC+AGG + chr1_4:57491624-57491643 None:intergenic 45.0%
ATGTGAACATTCACGTCCAG+CGG - chr1_4:57491662-57491681 Msa0172440:three_prime_UTR 45.0%
! CGTATCTAAGACCCTAGGTT+AGG - chr1_4:57491685-57491704 Msa0172440:three_prime_UTR 45.0%
! ATCTAAGACCCTAGGTTAGG+GGG - chr1_4:57491688-57491707 Msa0172440:three_prime_UTR 45.0%
! GTATGCCCTCATTTTGCAAG+TGG + chr1_4:57491902-57491921 None:intergenic 45.0%
! TCTGGCTCCATATTACACCA+TGG + chr1_4:57492212-57492231 None:intergenic 45.0%
CACTGCAGTAAAACATGCTC+TGG + chr1_4:57492239-57492258 None:intergenic 45.0%
ATGTTGGGACCAATTGTCCT+TGG - chr1_4:57492363-57492382 Msa0172440:intron 45.0%
AGGAAGTTGCCAATACAACC+TGG + chr1_4:57492709-57492728 None:intergenic 45.0%
TCACTAGCATCGTTCCCACA+AGG + chr1_4:57490776-57490795 None:intergenic 50.0%
ATGCAAACCAGCCCTTGTCA+TGG - chr1_4:57490898-57490917 Msa0172440:three_prime_UTR 50.0%
CCAACAGGCAGAGATTCTTG+CGG - chr1_4:57490963-57490982 Msa0172440:three_prime_UTR 50.0%
CAGGTGACGAATACTGCAAC+TGG - chr1_4:57491259-57491278 Msa0172440:three_prime_UTR 50.0%
GAATACTGCAACTGGTGCTC+AGG - chr1_4:57491267-57491286 Msa0172440:three_prime_UTR 50.0%
TGCAACTGGTGCTCAGGTAA+CGG - chr1_4:57491273-57491292 Msa0172440:three_prime_UTR 50.0%
CTTCTGGTAACCCTGTCCAT+TGG + chr1_4:57491368-57491387 None:intergenic 50.0%
CAATGGACAGGGTTACCAGA+AGG - chr1_4:57491366-57491385 Msa0172440:three_prime_UTR 50.0%
TAACCGTAAGGTGACCCTTC+TGG + chr1_4:57491384-57491403 None:intergenic 50.0%
AGGATGGGACCAATTGTCCA+TGG - chr1_4:57492192-57492211 Msa0172440:intron 50.0%
AAGACTTGCAGTGCCGTCAA+AGG - chr1_4:57492272-57492291 Msa0172440:intron 50.0%
! TCCTTGGTGTAATGTGGAGC+TGG - chr1_4:57492379-57492398 Msa0172440:intron 50.0%
TCCAGCTCCACATTACACCA+AGG + chr1_4:57492383-57492402 None:intergenic 50.0%
ATCAGAACAGCATGTGCAGC+AGG - chr1_4:57492683-57492702 Msa0172440:CDS 50.0%
TCACTAGCATCGTTCCCACA+AGG + chr1_4:57490776-57490795 None:intergenic 50.0%
ATGCAAACCAGCCCTTGTCA+TGG - chr1_4:57490898-57490917 Msa0172440:three_prime_UTR 50.0%
CCAACAGGCAGAGATTCTTG+CGG - chr1_4:57490963-57490982 Msa0172440:three_prime_UTR 50.0%
CAGGTGACGAATACTGCAAC+TGG - chr1_4:57491259-57491278 Msa0172440:three_prime_UTR 50.0%
GAATACTGCAACTGGTGCTC+AGG - chr1_4:57491267-57491286 Msa0172440:three_prime_UTR 50.0%
TGCAACTGGTGCTCAGGTAA+CGG - chr1_4:57491273-57491292 Msa0172440:three_prime_UTR 50.0%
CTTCTGGTAACCCTGTCCAT+TGG + chr1_4:57491368-57491387 None:intergenic 50.0%
CAATGGACAGGGTTACCAGA+AGG - chr1_4:57491366-57491385 Msa0172440:three_prime_UTR 50.0%
TAACCGTAAGGTGACCCTTC+TGG + chr1_4:57491384-57491403 None:intergenic 50.0%
AGGATGGGACCAATTGTCCA+TGG - chr1_4:57492192-57492211 Msa0172440:intron 50.0%
AAGACTTGCAGTGCCGTCAA+AGG - chr1_4:57492272-57492291 Msa0172440:intron 50.0%
! TCCTTGGTGTAATGTGGAGC+TGG - chr1_4:57492379-57492398 Msa0172440:intron 50.0%
TCCAGCTCCACATTACACCA+AGG + chr1_4:57492383-57492402 None:intergenic 50.0%
ATCAGAACAGCATGTGCAGC+AGG - chr1_4:57492683-57492702 Msa0172440:CDS 50.0%
GTGGGAACGATGCTAGTGAG+TGG - chr1_4:57490777-57490796 Msa0172440:three_prime_UTR 55.0%
! ACTGCCTTTTGTGGACCAGC+TGG - chr1_4:57490939-57490958 Msa0172440:three_prime_UTR 55.0%
! CTGCCTTTTGTGGACCAGCT+GGG - chr1_4:57490940-57490959 Msa0172440:three_prime_UTR 55.0%
CCGCAAGAATCTCTGCCTGT+TGG + chr1_4:57490966-57490985 None:intergenic 55.0%
! GTGGTGATGACCGATGATGC+AGG - chr1_4:57491240-57491259 Msa0172440:three_prime_UTR 55.0%
GTGGACAAGTGCTCCAATGG+TGG - chr1_4:57491304-57491323 Msa0172440:three_prime_UTR 55.0%
!! CAAGTGCTCCAATGGTGGAC+TGG - chr1_4:57491309-57491328 Msa0172440:three_prime_UTR 55.0%
TAGGGTCTTAGATACGCCGC+TGG + chr1_4:57491681-57491700 None:intergenic 55.0%
! AGCGGCGTATCTAAGACCCT+AGG - chr1_4:57491680-57491699 Msa0172440:three_prime_UTR 55.0%
AGTTCGCACCCCCTAACCTA+GGG + chr1_4:57491699-57491718 None:intergenic 55.0%
AAGTTCGCACCCCCTAACCT+AGG + chr1_4:57491700-57491719 None:intergenic 55.0%
CCAGCAAGCTGCTCTCTCTA+TGG + chr1_4:57492623-57492642 None:intergenic 55.0%
CCATAGAGAGAGCAGCTTGC+TGG - chr1_4:57492620-57492639 Msa0172440:CDS 55.0%
!! AGAGCAGCTTGCTGGCAGAA+TGG - chr1_4:57492628-57492647 Msa0172440:CDS 55.0%
TGCAGCAGGCCAGGTTGTAT+TGG - chr1_4:57492697-57492716 Msa0172440:CDS 55.0%
GTGGGAACGATGCTAGTGAG+TGG - chr1_4:57490777-57490796 Msa0172440:three_prime_UTR 55.0%
! ACTGCCTTTTGTGGACCAGC+TGG - chr1_4:57490939-57490958 Msa0172440:three_prime_UTR 55.0%
! CTGCCTTTTGTGGACCAGCT+GGG - chr1_4:57490940-57490959 Msa0172440:three_prime_UTR 55.0%
CCGCAAGAATCTCTGCCTGT+TGG + chr1_4:57490966-57490985 None:intergenic 55.0%
! GTGGTGATGACCGATGATGC+AGG - chr1_4:57491240-57491259 Msa0172440:three_prime_UTR 55.0%
GTGGACAAGTGCTCCAATGG+TGG - chr1_4:57491304-57491323 Msa0172440:three_prime_UTR 55.0%
!! CAAGTGCTCCAATGGTGGAC+TGG - chr1_4:57491309-57491328 Msa0172440:three_prime_UTR 55.0%
TAGGGTCTTAGATACGCCGC+TGG + chr1_4:57491681-57491700 None:intergenic 55.0%
! AGCGGCGTATCTAAGACCCT+AGG - chr1_4:57491680-57491699 Msa0172440:three_prime_UTR 55.0%
AGTTCGCACCCCCTAACCTA+GGG + chr1_4:57491699-57491718 None:intergenic 55.0%
AAGTTCGCACCCCCTAACCT+AGG + chr1_4:57491700-57491719 None:intergenic 55.0%
CCAGCAAGCTGCTCTCTCTA+TGG + chr1_4:57492623-57492642 None:intergenic 55.0%
CCATAGAGAGAGCAGCTTGC+TGG - chr1_4:57492620-57492639 Msa0172440:CDS 55.0%
!! AGAGCAGCTTGCTGGCAGAA+TGG - chr1_4:57492628-57492647 Msa0172440:CDS 55.0%
TGCAGCAGGCCAGGTTGTAT+TGG - chr1_4:57492697-57492716 Msa0172440:CDS 55.0%
TGCTACGCCATGACAAGGGC+TGG + chr1_4:57490908-57490927 None:intergenic 60.0%
TGGCCCAGCTGGTCCACAAA+AGG + chr1_4:57490946-57490965 None:intergenic 60.0%
!! GCAGCTTGCTGGCAGAATGG+CGG - chr1_4:57492631-57492650 Msa0172440:CDS 60.0%
!! TTGCTGGCAGAATGGCGGAC+TGG - chr1_4:57492636-57492655 Msa0172440:CDS 60.0%
!! TGCTGGCAGAATGGCGGACT+GGG - chr1_4:57492637-57492656 Msa0172440:CDS 60.0%
AACAGCATGTGCAGCAGGCC+AGG - chr1_4:57492688-57492707 Msa0172440:CDS 60.0%
TGCTACGCCATGACAAGGGC+TGG + chr1_4:57490908-57490927 None:intergenic 60.0%
TGGCCCAGCTGGTCCACAAA+AGG + chr1_4:57490946-57490965 None:intergenic 60.0%
!! GCAGCTTGCTGGCAGAATGG+CGG - chr1_4:57492631-57492650 Msa0172440:CDS 60.0%
!! TTGCTGGCAGAATGGCGGAC+TGG - chr1_4:57492636-57492655 Msa0172440:CDS 60.0%
!! TGCTGGCAGAATGGCGGACT+GGG - chr1_4:57492637-57492656 Msa0172440:CDS 60.0%
AACAGCATGTGCAGCAGGCC+AGG - chr1_4:57492688-57492707 Msa0172440:CDS 60.0%
TGTGGACCAGCTGGGCCAAC+AGG - chr1_4:57490948-57490967 Msa0172440:three_prime_UTR 65.0%
TCTCTGCCTGTTGGCCCAGC+TGG + chr1_4:57490957-57490976 None:intergenic 65.0%
TGTGGACCAGCTGGGCCAAC+AGG - chr1_4:57490948-57490967 Msa0172440:three_prime_UTR 65.0%
TCTCTGCCTGTTGGCCCAGC+TGG + chr1_4:57490957-57490976 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57490668 57492761 57490668 ID=Msa0172440;Name=Msa0172440
chr1_4 mRNA 57490668 57492761 57490668 ID=Msa0172440-mRNA-1;Parent=Msa0172440;Name=Msa0172440-mRNA-1;_AED=0.39;_eAED=0.39;_QI=40|1|1|1|1|1|2|1275|171
chr1_4 exon 57490668 57492167 57490668 ID=Msa0172440-mRNA-1:exon:17608;Parent=Msa0172440-mRNA-1
chr1_4 exon 57492431 57492761 57492431 ID=Msa0172440-mRNA-1:exon:17607;Parent=Msa0172440-mRNA-1
chr1_4 five_prime_UTR 57492722 57492761 57492722 ID=Msa0172440-mRNA-1:five_prime_utr;Parent=Msa0172440-mRNA-1
chr1_4 CDS 57492431 57492721 57492431 ID=Msa0172440-mRNA-1:cds;Parent=Msa0172440-mRNA-1
chr1_4 CDS 57491943 57492167 57491943 ID=Msa0172440-mRNA-1:cds;Parent=Msa0172440-mRNA-1
chr1_4 three_prime_UTR 57490668 57491942 57490668 ID=Msa0172440-mRNA-1:three_prime_utr;Parent=Msa0172440-mRNA-1
Gene Sequence

>Msa0172440

ATGAAACACACAAAAGAGAAAATGGAGAGCACACAGAGAACTTTGAGCTTGTTGGTTTTGTGTTTCCTTGTGGGAACGATGCTAGTGAGTGGTCAGAGTGCAAACAACGTTAGGGCAACATACAACAATTACAACCCTCAGAATATTAACTGGGATTACATTACTGCCAGTGTATACTGTGCTACTTGGGATGCAAACCAGCCCTTGTCATGGCGTAGCAAATATGGTTGGACTGCCTTTTGTGGACCAGCTGGGCCAACAGGCAGAGATTCTTGCGGCAAATGCTTGAGTGTGACGAATACTGCAACTGGTGCTCAGGTAACGGTGAGAATAGTGGACAAGTGCTCCAATGGTGGACTGGACTTAGATGTGAATGTCTTCAATCAAATTGATACCAATGGACAGGGTTACCAGAAGGGTCACCTTACGGTTAACTATAGCTTTGTTAATTGCGGCGGTGATTTATTGACTCATCACTGGTGTAATAATTCACTCTTTATACAAATAAGTAGCTAG
Protein sequence

>Msa0172440

MKHTKEKMESTQRTLSLLVLCFLVGTMLVSGQSANNVRATYNNYNPQNINWDYITASVYCATWDANQPLSWRSKYGWTAFCGPAGPTGRDSCGKCLSVTNTATGAQVTVRIVDKCSNGGLDLDVNVFNQIDTNGQGYQKGHLTVNYSFVNCGGDLLTHHWCNNSLFIQISS*