Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050500 | XP_024625927.1 | 87.879 | 99 | 12 | 0 | 3 | 101 | 785 | 883 | 3.36e-51 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050500 | A0A072TWY8 | 87.879 | 99 | 12 | 0 | 3 | 101 | 775 | 873 | 1.62e-51 | 183 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa1050500 | 0.849730 | 2.680200e-60 | -8.615850e-47 |
| Msa0032290 | Msa1050500 | 0.822019 | 2.963708e-53 | -8.615850e-47 |
| Msa0043380 | Msa1050500 | 0.813591 | 2.368373e-51 | -8.615850e-47 |
| Msa0050240 | Msa1050500 | 0.806157 | 9.425507e-50 | -8.615850e-47 |
| Msa0072830 | Msa1050500 | 0.807932 | 3.970573e-50 | -8.615850e-47 |
| Msa0072860 | Msa1050500 | 0.820154 | 7.968887e-53 | -8.615850e-47 |
| Msa0088550 | Msa1050500 | 0.847804 | 9.170935e-60 | -8.615850e-47 |
| Msa0089010 | Msa1050500 | 0.824526 | 7.695753e-54 | -8.615850e-47 |
| Msa0104360 | Msa1050500 | 0.809654 | 1.700237e-50 | -8.615850e-47 |
| Msa0108950 | Msa1050500 | 0.817545 | 3.119658e-52 | -8.615850e-47 |
| Msa0607400 | Msa1050500 | 0.821133 | 4.746398e-53 | -8.615850e-47 |
| Msa0613480 | Msa1050500 | 0.810501 | 1.116955e-50 | -8.615850e-47 |
| Msa0617370 | Msa1050500 | 0.802361 | 5.818604e-49 | -8.615850e-47 |
| Msa0629890 | Msa1050500 | 0.852098 | 5.768723e-61 | -8.615850e-47 |
| Msa0629930 | Msa1050500 | 0.830256 | 3.252713e-55 | -8.615850e-47 |
| Msa0629940 | Msa1050500 | 0.814487 | 1.502550e-51 | -8.615850e-47 |
| Msa0630000 | Msa1050500 | 0.804342 | 2.261708e-49 | -8.615850e-47 |
| Msa0630060 | Msa1050500 | 0.826682 | 2.372909e-54 | -8.615850e-47 |
| Msa0632560 | Msa1050500 | 0.800882 | 1.170179e-48 | -8.615850e-47 |
| Msa0641020 | Msa1050500 | 0.805244 | 1.465617e-49 | -8.615850e-47 |
| Msa0654020 | Msa1050500 | 0.806943 | 6.434279e-50 | -8.615850e-47 |
| Msa0672810 | Msa1050500 | 0.811386 | 7.185010e-51 | -8.615850e-47 |
| Msa0672850 | Msa1050500 | 0.816738 | 4.735919e-52 | -8.615850e-47 |
| Msa0678240 | Msa1050500 | 0.824754 | 6.801169e-54 | -8.615850e-47 |
| Msa0691190 | Msa1050500 | 0.803642 | 3.162476e-49 | -8.615850e-47 |
| Msa0739390 | Msa1050500 | 0.811241 | 7.727045e-51 | -8.615850e-47 |
| Msa0752580 | Msa1050500 | 0.855395 | 6.491262e-62 | -8.615850e-47 |
| Msa0754180 | Msa1050500 | 0.830073 | 3.606819e-55 | -8.615850e-47 |
| Msa0754500 | Msa1050500 | 0.847037 | 1.489302e-59 | -8.615850e-47 |
| Msa0756410 | Msa1050500 | 0.806735 | 7.118916e-50 | -8.615850e-47 |
| Msa0761640 | Msa1050500 | 0.811063 | 8.443346e-51 | -8.615850e-47 |
| Msa0770890 | Msa1050500 | 0.809238 | 2.088483e-50 | -8.615850e-47 |
| Msa0782090 | Msa1050500 | 0.804425 | 2.173472e-49 | -8.615850e-47 |
| Msa0784710 | Msa1050500 | 0.806076 | 9.804439e-50 | -8.615850e-47 |
| Msa0788360 | Msa1050500 | 0.806871 | 6.664163e-50 | -8.615850e-47 |
| Msa0808160 | Msa1050500 | 0.804768 | 1.843792e-49 | -8.615850e-47 |
| Msa0811000 | Msa1050500 | 0.822967 | 1.784602e-53 | -8.615850e-47 |
| Msa0818030 | Msa1050500 | 0.810758 | 9.827611e-51 | -8.615850e-47 |
| Msa0819740 | Msa1050500 | 0.817787 | 2.750667e-52 | -8.615850e-47 |
| Msa0826650 | Msa1050500 | 0.810367 | 1.193922e-50 | -8.615850e-47 |
| Msa0830900 | Msa1050500 | 0.843922 | 1.040304e-58 | -8.615850e-47 |
| Msa0842050 | Msa1050500 | 0.807061 | 6.075698e-50 | -8.615850e-47 |
| Msa0135360 | Msa1050500 | 0.846059 | 2.755356e-59 | -8.615850e-47 |
| Msa0153430 | Msa1050500 | 0.805925 | 1.054679e-49 | -8.615850e-47 |
| Msa0153440 | Msa1050500 | 0.858007 | 1.107025e-62 | -8.615850e-47 |
| Msa0154580 | Msa1050500 | 0.823934 | 1.060107e-53 | -8.615850e-47 |
| Msa0172440 | Msa1050500 | 0.807657 | 4.541545e-50 | -8.615850e-47 |
| Msa0179860 | Msa1050500 | 0.812164 | 4.865006e-51 | -8.615850e-47 |
| Msa0180290 | Msa1050500 | 0.820186 | 7.835594e-53 | -8.615850e-47 |
| Msa0203070 | Msa1050500 | 0.835250 | 1.872301e-56 | -8.615850e-47 |
| Msa0211670 | Msa1050500 | 0.866312 | 3.126433e-65 | -8.615850e-47 |
| Msa0212210 | Msa1050500 | 0.845478 | 3.960827e-59 | -8.615850e-47 |
| Msa0232860 | Msa1050500 | 0.838724 | 2.426124e-57 | -8.615850e-47 |
| Msa0389030 | Msa1050500 | 0.812883 | 3.387963e-51 | -8.615850e-47 |
| Msa0389050 | Msa1050500 | 0.860733 | 1.680780e-63 | -8.615850e-47 |
| Msa0389060 | Msa1050500 | 0.812029 | 5.206890e-51 | -8.615850e-47 |
| Msa0391080 | Msa1050500 | 0.800739 | 1.251119e-48 | -8.615850e-47 |
| Msa0409820 | Msa1050500 | 0.804796 | 1.818643e-49 | -8.615850e-47 |
| Msa0410960 | Msa1050500 | 0.800314 | 1.527247e-48 | -8.615850e-47 |
| Msa0437330 | Msa1050500 | 0.802913 | 4.477447e-49 | -8.615850e-47 |
| Msa0439700 | Msa1050500 | 0.845557 | 3.771538e-59 | -8.615850e-47 |
| Msa0452010 | Msa1050500 | 0.811011 | 8.666307e-51 | -8.615850e-47 |
| Msa0455260 | Msa1050500 | 0.817810 | 2.717993e-52 | -8.615850e-47 |
| Msa0481320 | Msa1050500 | 0.834696 | 2.581140e-56 | -8.615850e-47 |
| Msa0984720 | Msa1050500 | 0.800120 | 1.673046e-48 | -8.615850e-47 |
| Msa0984840 | Msa1050500 | 0.802503 | 5.440089e-49 | -8.615850e-47 |
| Msa0987860 | Msa1050500 | 0.811695 | 6.154918e-51 | -8.615850e-47 |
| Msa1006290 | Msa1050500 | 0.812345 | 4.441758e-51 | -8.615850e-47 |
| Msa1006460 | Msa1050500 | 0.828286 | 9.784718e-55 | -8.615850e-47 |
| Msa1006600 | Msa1050500 | 0.823009 | 1.744061e-53 | -8.615850e-47 |
| Msa1006680 | Msa1050500 | 0.839551 | 1.480535e-57 | -8.615850e-47 |
| Msa1008340 | Msa1050500 | 0.824678 | 7.085498e-54 | -8.615850e-47 |
| Msa1009150 | Msa1050500 | 0.844002 | 9.896517e-59 | -8.615850e-47 |
| Msa1009170 | Msa1050500 | 0.867441 | 1.365847e-65 | -8.615850e-47 |
| Msa1009180 | Msa1050500 | 0.803661 | 3.133697e-49 | -8.615850e-47 |
| Msa1009200 | Msa1050500 | 0.818711 | 1.699463e-52 | -8.615850e-47 |
| Msa1009220 | Msa1050500 | 0.821241 | 4.483351e-53 | -8.615850e-47 |
| Msa1037580 | Msa1050500 | 0.835489 | 1.629211e-56 | -8.615850e-47 |
| Msa1048590 | Msa1050500 | 0.863187 | 2.976854e-64 | -8.615850e-47 |
| Msa1048610 | Msa1050500 | 0.856563 | 2.956603e-62 | -8.615850e-47 |
| Msa1049950 | Msa1050500 | 0.802633 | 5.114948e-49 | -8.615850e-47 |
| Msa1050480 | Msa1050500 | 0.877455 | 6.201138e-69 | -8.615850e-47 |
| Msa1050490 | Msa1050500 | 0.892550 | 1.431615e-74 | -8.615850e-47 |
| Msa1050500 | Msa1052070 | 0.815893 | 7.319135e-52 | -8.615850e-47 |
| Msa1050500 | Msa1098340 | 0.830588 | 2.698470e-55 | -8.615850e-47 |
| Msa1050500 | Msa1098350 | 0.824936 | 6.159894e-54 | -8.615850e-47 |
| Msa1050500 | Msa1098380 | 0.854212 | 1.431023e-61 | -8.615850e-47 |
| Msa1050500 | Msa1100180 | 0.801383 | 9.242513e-49 | -8.615850e-47 |
| Msa1050500 | Msa1107830 | 0.814055 | 1.872263e-51 | -8.615850e-47 |
| Msa1050500 | Msa1130350 | 0.817226 | 3.679905e-52 | -8.615850e-47 |
| Msa1050500 | Msa1130630 | 0.807830 | 4.173513e-50 | -8.615850e-47 |
| Msa1050500 | Msa1135660 | 0.870824 | 1.090013e-66 | -8.615850e-47 |
| Msa1050500 | Msa1138450 | 0.872926 | 2.184532e-67 | -8.615850e-47 |
| Msa1050500 | Msa1138480 | 0.898111 | 7.302780e-77 | -8.615850e-47 |
| Msa1050500 | Msa1138490 | 0.845991 | 2.875239e-59 | -8.615850e-47 |
| Msa1050500 | Msa1138500 | 0.832881 | 7.338326e-56 | -8.615850e-47 |
| Msa1050500 | Msa1139240 | 0.837812 | 4.167335e-57 | -8.615850e-47 |
| Msa1050500 | Msa1140460 | 0.806345 | 8.606711e-50 | -8.615850e-47 |
| Msa1050500 | Msa1151550 | 0.818398 | 2.001646e-52 | -8.615850e-47 |
| Msa1050500 | Msa1182780 | 0.811080 | 8.370193e-51 | -8.615850e-47 |
| Msa1050500 | Msa1182830 | 0.845764 | 3.312935e-59 | -8.615850e-47 |
| Msa1050500 | Msa1204430 | 0.848702 | 5.179250e-60 | -8.615850e-47 |
| Msa1050500 | Msa1237260 | 0.805316 | 1.415841e-49 | -8.615850e-47 |
| Msa1050500 | Msa1238130 | 0.840177 | 1.017561e-57 | -8.615850e-47 |
| Msa1050500 | Msa1246560 | 0.805504 | 1.292835e-49 | -8.615850e-47 |
| Msa1050500 | Msa1258280 | 0.804872 | 1.753715e-49 | -8.615850e-47 |
| Msa1050500 | Msa1279330 | 0.803626 | 3.187157e-49 | -8.615850e-47 |
| Msa1050500 | Msa1279850 | 0.838574 | 2.652692e-57 | -8.615850e-47 |
| Msa1050500 | Msa1279860 | 0.833589 | 4.889367e-56 | -8.615850e-47 |
| Msa1050500 | Msa1279870 | 0.831672 | 1.461632e-55 | -8.615850e-47 |
| Msa1050500 | Msa1285820 | 0.823451 | 1.375709e-53 | -8.615850e-47 |
| Msa1050500 | Msa1285830 | 0.844398 | 7.751513e-59 | -8.615850e-47 |
| Msa1050500 | Msa1287700 | 0.817689 | 2.895425e-52 | -8.615850e-47 |
| Msa1050500 | Msa1296650 | 0.828704 | 7.755309e-55 | -8.615850e-47 |
| Msa1050500 | Msa1304850 | 0.802586 | 5.229086e-49 | -8.615850e-47 |
| Msa1050500 | Msa1311150 | 0.810164 | 1.320971e-50 | -8.615850e-47 |
| Msa1050500 | Msa1352060 | 0.814106 | 1.823608e-51 | -8.615850e-47 |
| Msa1050500 | Msa1396820 | 0.828535 | 8.519865e-55 | -8.615850e-47 |
| Msa1050500 | Msa1412280 | 0.816403 | 5.630455e-52 | -8.615850e-47 |
| Msa1050500 | Msa1423970 | 0.830270 | 3.228622e-55 | -8.615850e-47 |
| Msa1050500 | Msa1427810 | 0.806540 | 7.827932e-50 | -8.615850e-47 |
| Msa1050500 | Msa1441200 | 0.814706 | 1.343696e-51 | -8.615850e-47 |
| Msa1050500 | Msa1445250 | 0.807550 | 4.785997e-50 | -8.615850e-47 |
| Msa1050500 | Msa1457070 | 0.811112 | 8.241342e-51 | -8.615850e-47 |
| Msa1050500 | Msa1459170 | 0.852127 | 5.659812e-61 | -8.615850e-47 |
| Msa1050500 | Msa1460310 | -0.813173 | 2.926537e-51 | -8.615850e-47 |
| Msa0243940 | Msa1050500 | 0.824267 | 8.854795e-54 | -8.615850e-47 |
| Msa0254190 | Msa1050500 | 0.834312 | 3.223640e-56 | -8.615850e-47 |
| Msa0256270 | Msa1050500 | 0.826437 | 2.713550e-54 | -8.615850e-47 |
| Msa0264940 | Msa1050500 | -0.806868 | 6.674925e-50 | -8.615850e-47 |
| Msa0284810 | Msa1050500 | 0.833448 | 5.301644e-56 | -8.615850e-47 |
| Msa0302990 | Msa1050500 | -0.813128 | 2.994357e-51 | -8.615850e-47 |
| Msa0323550 | Msa1050500 | 0.822637 | 2.130005e-53 | -8.615850e-47 |
| Msa0329550 | Msa1050500 | 0.824231 | 9.029094e-54 | -8.615850e-47 |
| Msa0363440 | Msa1050500 | 0.825516 | 4.492382e-54 | -8.615850e-47 |
| Msa0499710 | Msa1050500 | 0.826269 | 2.975897e-54 | -8.615850e-47 |
| Msa0533460 | Msa1050500 | 0.806316 | 8.727739e-50 | -8.615850e-47 |
| Msa0563140 | Msa1050500 | 0.800594 | 1.339305e-48 | -8.615850e-47 |
| Msa0587670 | Msa1050500 | 0.822875 | 1.874696e-53 | -8.615850e-47 |
| Msa0589610 | Msa1050500 | 0.829252 | 5.710907e-55 | -8.615850e-47 |
| Msa0589660 | Msa1050500 | 0.802744 | 4.850545e-49 | -8.615850e-47 |
| Msa0591780 | Msa1050500 | 0.802686 | 4.988090e-49 | -8.615850e-47 |
| Msa0599250 | Msa1050500 | 0.803151 | 3.997989e-49 | -8.615850e-47 |
| Msa0849130 | Msa1050500 | 0.815202 | 1.043428e-51 | -8.615850e-47 |
| Msa0853500 | Msa1050500 | 0.807181 | 5.730595e-50 | -8.615850e-47 |
| Msa0862020 | Msa1050500 | 0.825038 | 5.827052e-54 | -8.615850e-47 |
| Msa0864690 | Msa1050500 | 0.811418 | 7.072413e-51 | -8.615850e-47 |
| Msa0867810 | Msa1050500 | 0.814864 | 1.239684e-51 | -8.615850e-47 |
| Msa0883350 | Msa1050500 | 0.820727 | 5.885815e-53 | -8.615850e-47 |
| Msa0883390 | Msa1050500 | 0.802896 | 4.513665e-49 | -8.615850e-47 |
| Msa0883410 | Msa1050500 | 0.806224 | 9.125399e-50 | -8.615850e-47 |
| Msa0883660 | Msa1050500 | 0.829399 | 5.260728e-55 | -8.615850e-47 |
| Msa0883670 | Msa1050500 | 0.815140 | 1.076853e-51 | -8.615850e-47 |
| Msa0886660 | Msa1050500 | 0.814681 | 1.361195e-51 | -8.615850e-47 |
| Msa0887000 | Msa1050500 | 0.800842 | 1.192281e-48 | -8.615850e-47 |
| Msa0902980 | Msa1050500 | 0.810763 | 9.804432e-51 | -8.615850e-47 |
| Msa0912160 | Msa1050500 | 0.801514 | 8.688296e-49 | -8.615850e-47 |
| Msa0912200 | Msa1050500 | 0.806982 | 6.314988e-50 | -8.615850e-47 |
| Msa0951720 | Msa1050500 | 0.806014 | 1.010435e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050500 | MtrunA17_Chr7g0219651 | 87.879 | 99 | 12 | 0 | 3 | 101 | 1770 | 1868 | 4.67e-55 | 183 |
| Msa1050500 | MtrunA17_Chr7g0219651 | 80.198 | 101 | 14 | 1 | 3 | 97 | 774 | 874 | 9.91e-49 | 165 |
| Msa1050500 | MtrunA17_Chr7g0219571 | 86.869 | 99 | 13 | 0 | 3 | 101 | 785 | 883 | 1.71e-54 | 181 |
| Msa1050500 | MtrunA17_Chr7g0219581 | 66.667 | 108 | 27 | 1 | 3 | 101 | 209 | 316 | 1.91e-44 | 145 |
| Msa1050500 | MtrunA17_Chr4g0025961 | 68.519 | 108 | 25 | 1 | 3 | 101 | 778 | 885 | 6.02e-43 | 148 |
| Msa1050500 | MtrunA17_Chr7g0219601 | 66.667 | 108 | 27 | 1 | 3 | 101 | 769 | 876 | 1.25e-39 | 139 |
| Msa1050500 | MtrunA17_Chr7g0219611 | 65.657 | 99 | 29 | 1 | 3 | 101 | 765 | 858 | 2.15e-34 | 124 |
| Msa1050500 | MtrunA17_Chr7g0219621 | 95.349 | 43 | 2 | 0 | 3 | 45 | 176 | 218 | 3.00e-22 | 86.3 |
| Msa1050500 | MtrunA17_Chr7g0219671 | 49.541 | 109 | 32 | 5 | 3 | 90 | 783 | 889 | 2.80e-21 | 87.0 |
| Msa1050500 | MtrunA17_Chr7g0219721 | 45.283 | 106 | 40 | 3 | 3 | 90 | 783 | 888 | 2.30e-18 | 78.6 |
| Msa1050500 | MtrunA17_Chr7g0219781 | 48.624 | 109 | 33 | 5 | 3 | 90 | 786 | 892 | 4.68e-18 | 77.8 |
| Msa1050500 | MtrunA17_Chr7g0219691 | 44.340 | 106 | 41 | 3 | 3 | 90 | 783 | 888 | 3.79e-17 | 75.1 |
| Msa1050500 | MtrunA17_Chr7g0219761 | 62.791 | 43 | 16 | 0 | 3 | 45 | 38 | 80 | 4.36e-12 | 57.0 |
| Msa1050500 | MtrunA17_Chr7g0219681 | 65.116 | 43 | 15 | 0 | 3 | 45 | 774 | 816 | 2.91e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAACCTTTCTTTGAAAT+TGG | 0.101855 | 7_2:-15252608 | Msa1050500:CDS |
| ACATATAAGTGTTGAAGTTT+TGG | 0.270609 | 7_2:+15252558 | None:intergenic |
| AACAACCTTTCTTTGAAATT+GGG | 0.351358 | 7_2:-15252607 | Msa1050500:CDS |
| AAAGGTTGTTCTTGAGTACT+TGG | 0.402756 | 7_2:+15252620 | None:intergenic |
| AGTGAGGAAGATAGTCAGTT+TGG | 0.417130 | 7_2:-15252740 | Msa1050500:CDS |
| TTTAGAGTTTGCGTTGCAAT+TGG | 0.422622 | 7_2:-15252768 | Msa1050500:CDS |
| CTTCAATGAGTCAAGTGGTT+GGG | 0.422708 | 7_2:-15252793 | Msa1050500:CDS |
| TTCAATGAGTCAAGTGGTTG+GGG | 0.429791 | 7_2:-15252792 | Msa1050500:CDS |
| TGATTCCCAATTTCAAAGAA+AGG | 0.432400 | 7_2:+15252602 | None:intergenic |
| CGAGACGGTACTCTCCTTGT+AGG | 0.441050 | 7_2:+15252649 | None:intergenic |
| TTAAGTTGTTTGCATGATGA+TGG | 0.466658 | 7_2:-15252827 | Msa1050500:CDS |
| CCAACCACTTGACTCATTGA+AGG | 0.486871 | 7_2:+15252794 | None:intergenic |
| AGAGTTTGCGTTGCAATTGG+TGG | 0.523981 | 7_2:-15252765 | Msa1050500:CDS |
| CACGAGATCGCACACCTACA+AGG | 0.527211 | 7_2:-15252663 | Msa1050500:CDS |
| TAAGTTGTTTGCATGATGAT+GGG | 0.556475 | 7_2:-15252826 | Msa1050500:CDS |
| AGTACTTGGCCTCGCCGAGA+CGG | 0.577496 | 7_2:+15252634 | None:intergenic |
| CCTTCAATGAGTCAAGTGGT+TGG | 0.599636 | 7_2:-15252794 | Msa1050500:CDS |
| ACGACCTTCAATGAGTCAAG+TGG | 0.623156 | 7_2:-15252798 | Msa1050500:CDS |
| GTTGCAATTGGTGGTGAGTG+AGG | 0.655883 | 7_2:-15252756 | Msa1050500:CDS |
| CTACAAGGAGAGTACCGTCT+CGG | 0.656380 | 7_2:-15252648 | Msa1050500:CDS |
| TCAATGAGTCAAGTGGTTGG+GGG | 0.661801 | 7_2:-15252791 | Msa1050500:CDS |
| AAATTGGGAATCAAAGAACA+CGG | 0.681680 | 7_2:-15252592 | Msa1050500:CDS |
| AGGAGAGTACCGTCTCGGCG+AGG | 0.710756 | 7_2:-15252643 | Msa1050500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGAATATTATTGCAAGT+TGG | - | chr7_2:15252563-15252582 | Msa1050500:CDS | 25.0% |
| !!! | AACAACCTTTCTTTGAAATT+GGG | - | chr7_2:15252808-15252827 | Msa1050500:CDS | 25.0% |
| !!! | ACATATAAGTGTTGAAGTTT+TGG | + | chr7_2:15252860-15252879 | None:intergenic | 25.0% |
| ! | TTAAGTTGTTTGCATGATGA+TGG | - | chr7_2:15252588-15252607 | Msa1050500:CDS | 30.0% |
| TAAGTTGTTTGCATGATGAT+GGG | - | chr7_2:15252589-15252608 | Msa1050500:CDS | 30.0% | |
| !! | GAACAACCTTTCTTTGAAAT+TGG | - | chr7_2:15252807-15252826 | Msa1050500:CDS | 30.0% |
| TGATTCCCAATTTCAAAGAA+AGG | + | chr7_2:15252816-15252835 | None:intergenic | 30.0% | |
| AAATTGGGAATCAAAGAACA+CGG | - | chr7_2:15252823-15252842 | Msa1050500:CDS | 30.0% | |
| ! | TTTAGAGTTTGCGTTGCAAT+TGG | - | chr7_2:15252647-15252666 | Msa1050500:CDS | 35.0% |
| ! | CATATATGCCCTCTCTTTTT+GGG | + | chr7_2:15252706-15252725 | None:intergenic | 35.0% |
| ! | TCATATATGCCCTCTCTTTT+TGG | + | chr7_2:15252707-15252726 | None:intergenic | 35.0% |
| AAAGGTTGTTCTTGAGTACT+TGG | + | chr7_2:15252798-15252817 | None:intergenic | 35.0% | |
| CTTCAATGAGTCAAGTGGTT+GGG | - | chr7_2:15252622-15252641 | Msa1050500:CDS | 40.0% | |
| TTCAATGAGTCAAGTGGTTG+GGG | - | chr7_2:15252623-15252642 | Msa1050500:CDS | 40.0% | |
| AGTGAGGAAGATAGTCAGTT+TGG | - | chr7_2:15252675-15252694 | Msa1050500:CDS | 40.0% | |
| ACGACCTTCAATGAGTCAAG+TGG | - | chr7_2:15252617-15252636 | Msa1050500:CDS | 45.0% | |
| CCAACCACTTGACTCATTGA+AGG | + | chr7_2:15252624-15252643 | None:intergenic | 45.0% | |
| CCTTCAATGAGTCAAGTGGT+TGG | - | chr7_2:15252621-15252640 | Msa1050500:CDS | 45.0% | |
| TCAATGAGTCAAGTGGTTGG+GGG | - | chr7_2:15252624-15252643 | Msa1050500:CDS | 45.0% | |
| AGAGTTTGCGTTGCAATTGG+TGG | - | chr7_2:15252650-15252669 | Msa1050500:CDS | 45.0% | |
| TTGGTACGACCCAAAAAGAG+AGG | - | chr7_2:15252694-15252713 | Msa1050500:CDS | 45.0% | |
| TGGTACGACCCAAAAAGAGA+GGG | - | chr7_2:15252695-15252714 | Msa1050500:CDS | 45.0% | |
| !! | GTTGCAATTGGTGGTGAGTG+AGG | - | chr7_2:15252659-15252678 | Msa1050500:CDS | 50.0% |
| !! | CTACAAGGAGAGTACCGTCT+CGG | - | chr7_2:15252767-15252786 | Msa1050500:CDS | 50.0% |
| CACGAGATCGCACACCTACA+AGG | - | chr7_2:15252752-15252771 | Msa1050500:CDS | 55.0% | |
| CGAGACGGTACTCTCCTTGT+AGG | + | chr7_2:15252769-15252788 | None:intergenic | 55.0% | |
| AGTACTTGGCCTCGCCGAGA+CGG | + | chr7_2:15252784-15252803 | None:intergenic | 60.0% | |
| !! | AGGAGAGTACCGTCTCGGCG+AGG | - | chr7_2:15252772-15252791 | Msa1050500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 15252556 | 15252881 | 15252556 | ID=Msa1050500;Name=Msa1050500 |
| chr7_2 | mRNA | 15252556 | 15252881 | 15252556 | ID=Msa1050500-mRNA-1;Parent=Msa1050500;Name=Msa1050500-mRNA-1;_AED=0.73;_eAED=0.74;_QI=0|0|0|1|0|0|2|0|101 |
| chr7_2 | exon | 15252876 | 15252881 | 15252876 | ID=Msa1050500-mRNA-1:exon:3646;Parent=Msa1050500-mRNA-1 |
| chr7_2 | exon | 15252556 | 15252855 | 15252556 | ID=Msa1050500-mRNA-1:exon:3645;Parent=Msa1050500-mRNA-1 |
| chr7_2 | CDS | 15252876 | 15252881 | 15252876 | ID=Msa1050500-mRNA-1:cds;Parent=Msa1050500-mRNA-1 |
| chr7_2 | CDS | 15252556 | 15252855 | 15252556 | ID=Msa1050500-mRNA-1:cds;Parent=Msa1050500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
