AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455260 MtrunA17_Chr3g0102071 100.000 108 0 0 1 108 243 350 2.68e-72 218
Msa0455260 MtrunA17_Chr2g0328511 65.421 107 37 0 1 107 230 336 5.82e-49 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455260 AT1G55910.1 71.296 108 31 0 1 108 219 326 1.65e-50 162
Msa0455260 AT5G59520.1 57.009 107 46 0 1 107 247 353 1.38e-34 122

Find 72 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGTCTTTATGAATATT+TGG 0.156771 3_3:+47926226 Msa0455260:five_prime_UTR
CAGACGCATGGAAAGCTTTA+TGG 0.223228 3_3:+47926824 Msa0455260:five_prime_UTR
TTATAGCTGTTGTTATGATA+TGG 0.275907 3_3:+47927178 Msa0455260:CDS
GCGGTCTTGTCATGTGAATT+TGG 0.336543 3_3:+47926275 Msa0455260:five_prime_UTR
CAATCGTTAAGTGCATGTTT+TGG 0.338958 3_3:-47927650 None:intergenic
AAACTTGTATCCTGCATCTA+TGG 0.340469 3_3:-47927393 None:intergenic
TTTCCAATGGAAAATGAGTA+TGG 0.346400 3_3:-47927416 None:intergenic
CTTGCAGTGTCGTTGGGAAT+AGG 0.356247 3_3:+47927153 Msa0455260:CDS
TTGTAATAATGATGAAAATA+TGG 0.370997 3_3:-47926401 None:intergenic
TAATTCTCAGTCACAATATC+AGG 0.371536 3_3:+47926550 Msa0455260:five_prime_UTR
GTATCCTGCATCTATGGAAC+AGG 0.372103 3_3:-47927387 None:intergenic
TCACCGCGTGTTTGGTTTCG+TGG 0.386804 3_3:+47927523 Msa0455260:three_prime_UTR
ATTCCAATGGCCACACCAAT+TGG 0.398109 3_3:-47926967 None:intergenic
CTTCCAACTGTAAGGAATCT+AGG 0.402490 3_3:-47926073 None:intergenic
ATTATATTCTTCCAACTGTA+AGG 0.404453 3_3:-47926081 None:intergenic
TATAGCTGTTGTTATGATAT+GGG 0.411672 3_3:+47927179 Msa0455260:CDS
GTTAGACAAGGTGAATCTTA+AGG 0.411908 3_3:-47926464 None:intergenic
AAAGATATTCACCGCGTGTT+TGG 0.417567 3_3:+47927515 Msa0455260:three_prime_UTR
AAATTCAATTCTGATATTTG+CGG 0.418824 3_3:+47926256 Msa0455260:five_prime_UTR
CATGATAGTAGAGGTCGATT+AGG 0.426412 3_3:-47926910 None:intergenic
AATATTCACATCTCTATAGT+TGG 0.444127 3_3:+47926101 Msa0455260:five_prime_UTR
AAGTTTCTTGCAGTGTCGTT+GGG 0.445877 3_3:+47927147 Msa0455260:CDS
CCATGGGCATTGCTCTCCTT+AGG 0.446281 3_3:+47926881 Msa0455260:exon
AAAATAGATAGTCGCGTTCA+CGG 0.449725 3_3:-47927626 None:intergenic
TTGTGTTAACAGAGTTCTGC+TGG 0.452952 3_3:+47926667 Msa0455260:intron
TTCGCAATCTCTAGTCCAAT+TGG 0.460160 3_3:+47926952 Msa0455260:CDS
TAAGTGGTTGACTTGATCCT+TGG 0.466791 3_3:+47926011 Msa0455260:five_prime_UTR
CACAGGGTCATGTGGCCGAT+TGG 0.483842 3_3:+47927007 Msa0455260:CDS
GAAGTTTCTTGCAGTGTCGT+TGG 0.484647 3_3:+47927146 Msa0455260:CDS
AGTCCAATTGGTGTGGCCAT+TGG 0.487047 3_3:+47926964 Msa0455260:CDS
TCACATGATACTTATATGAC+TGG 0.488542 3_3:-47927463 None:intergenic
CTTGCACCTAGTAGTTCAAT+CGG 0.503612 3_3:+47926706 Msa0455260:five_prime_UTR
GGACCTAGATTCCTTACAGT+TGG 0.515088 3_3:+47926070 Msa0455260:five_prime_UTR
GAAAACAGAATGAGCACAAA+GGG 0.517694 3_3:-47926767 None:intergenic
GGGCATTGCTCTCCTTAGGA+TGG 0.519832 3_3:+47926885 Msa0455260:CDS
GTGCTGTACAAAGATATTTG+TGG 0.526796 3_3:+47926049 Msa0455260:five_prime_UTR
TCATAATTTCAAGTTTCCAA+TGG 0.527527 3_3:-47927429 None:intergenic
AGGTGCAAGATCAGTGTCAT+TGG 0.531839 3_3:-47926692 None:intergenic
CCTTATAAAACAAATCCACT+TGG 0.542808 3_3:-47927298 None:intergenic
CAAACATTCAAAGGCCGACT+CGG 0.545714 3_3:+47927116 Msa0455260:CDS
AGTCCCTGTTCCATAGATGC+AGG 0.554824 3_3:+47927383 Msa0455260:three_prime_UTR
GTATCTCCGATTGAACTACT+AGG 0.558840 3_3:-47926712 None:intergenic
GAGAGCAATGCCCATGGCAA+TGG 0.562553 3_3:-47926875 None:intergenic
AATATTCGCAGCCATTGCCA+TGG 0.570364 3_3:+47926864 Msa0455260:exon
TTGCAGGGGCAGACAAAGGA+AGG 0.574896 3_3:+47926516 Msa0455260:five_prime_UTR
TGTATTAGATTCCACAACAC+AGG 0.578420 3_3:+47926990 Msa0455260:CDS
ATATCTATGGGTCTAGCTTG+TGG 0.583623 3_3:+47927039 Msa0455260:CDS
AGATATAGCGAAAATCCAAT+CGG 0.583976 3_3:-47927022 None:intergenic
GTCGATTAGGAACCATCCTA+AGG 0.588650 3_3:-47926897 None:intergenic
CGAAAACAGAATGAGCACAA+AGG 0.590220 3_3:-47926768 None:intergenic
GACTTGCCAAAATTGAAATG+AGG 0.596058 3_3:-47927364 None:intergenic
TCGGCCTTTGAATGTTTGTG+AGG 0.596171 3_3:-47927111 None:intergenic
TGTGCCTCACAAACATTCAA+AGG 0.597773 3_3:+47927107 Msa0455260:CDS
CAAATTGCAGGGGCAGACAA+AGG 0.599181 3_3:+47926512 Msa0455260:five_prime_UTR
GGAATCTAATACAATTCCAA+TGG 0.601962 3_3:-47926980 None:intergenic
GGCCACATGACCCTGTGTTG+TGG 0.602728 3_3:-47927001 None:intergenic
CCGTGACAAAAGCAGACGCA+TGG 0.606169 3_3:+47926812 Msa0455260:five_prime_UTR
ATATTCGCAGCCATTGCCAT+GGG 0.618731 3_3:+47926865 Msa0455260:exon
AAACTTCATATAAGCCGAGT+CGG 0.619401 3_3:-47927130 None:intergenic
ACAAGACTTTGAAAAGTCCA+AGG 0.626708 3_3:-47926028 None:intergenic
TAATAATGATGAAAATATGG+TGG 0.630436 3_3:-47926398 None:intergenic
AAGTAGCTTTGTGTTAGACA+AGG 0.633984 3_3:-47926476 None:intergenic
TTCCACAACACAGGGTCATG+TGG 0.634030 3_3:+47926999 Msa0455260:CDS
GCAGACAAAGGAAGGAGCAA+CGG 0.643713 3_3:+47926524 Msa0455260:five_prime_UTR
GATTGCGAATGCAAAAGCGT+AGG 0.649494 3_3:-47926938 None:intergenic
CCTAAGGAGAGCAATGCCCA+TGG 0.651165 3_3:-47926881 None:intergenic
AATCTCTAGTCCAATTGGTG+TGG 0.654473 3_3:+47926957 Msa0455260:CDS
GTATTAGATTCCACAACACA+GGG 0.667227 3_3:+47926991 Msa0455260:CDS
TAGGCTGCACATGATAGTAG+AGG 0.668698 3_3:-47926919 None:intergenic
CACGAACATGACAATGACTG+TGG 0.691279 3_3:-47926328 None:intergenic
TATCCTGCATCTATGGAACA+GGG 0.700160 3_3:-47927386 None:intergenic
TTGCCACGAAACCAAACACG+CGG 0.748783 3_3:-47927526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAATAATGATGAAAATA+TGG - chr3_3:47926404-47926423 None:intergenic 15.0%
!!! ATATTTTCATCATTATTACA+AGG + chr3_3:47926403-47926422 Msa0455260:five_prime_UTR 15.0%
!!! TATCTTTCTTCATATTTTTA+AGG - chr3_3:47927502-47927521 None:intergenic 15.0%
!! ATTATACATTTCATAAAAGT+CGG + chr3_3:47927679-47927698 Msa0455260:three_prime_UTR 15.0%
!! TTGTAATAATGATGAAAATA+TGG - chr3_3:47926404-47926423 None:intergenic 15.0%
!!! ATATTTTCATCATTATTACA+AGG + chr3_3:47926403-47926422 Msa0455260:five_prime_UTR 15.0%
!!! TATCTTTCTTCATATTTTTA+AGG - chr3_3:47927502-47927521 None:intergenic 15.0%
!! TTCATGTCTTTATGAATATT+TGG + chr3_3:47926226-47926245 Msa0455260:five_prime_UTR 20.0%
!! AAATTCAATTCTGATATTTG+CGG + chr3_3:47926256-47926275 Msa0455260:five_prime_UTR 20.0%
!! TTTCTGTTAAAAATTCGATT+TGG - chr3_3:47926365-47926384 None:intergenic 20.0%
!! TAATAATGATGAAAATATGG+TGG - chr3_3:47926401-47926420 None:intergenic 20.0%
!! TTCATGTCTTTATGAATATT+TGG + chr3_3:47926226-47926245 Msa0455260:five_prime_UTR 20.0%
!! AAATTCAATTCTGATATTTG+CGG + chr3_3:47926256-47926275 Msa0455260:five_prime_UTR 20.0%
!! TTTCTGTTAAAAATTCGATT+TGG - chr3_3:47926365-47926384 None:intergenic 20.0%
!! TAATAATGATGAAAATATGG+TGG - chr3_3:47926401-47926420 None:intergenic 20.0%
! TTCAACCAAAAAAAGATAAG+TGG + chr3_3:47925995-47926014 Msa0455260:five_prime_UTR 25.0%
! ATTATATTCTTCCAACTGTA+AGG - chr3_3:47926084-47926103 None:intergenic 25.0%
! AATATTCACATCTCTATAGT+TGG + chr3_3:47926101-47926120 Msa0455260:five_prime_UTR 25.0%
! CTCTATAGTTGGATAAAAAT+CGG + chr3_3:47926112-47926131 Msa0455260:five_prime_UTR 25.0%
!!! ACAAAGCTACTTTCTTTTTT+TGG + chr3_3:47926487-47926506 Msa0455260:five_prime_UTR 25.0%
!! AATAAACCATCTTTTTGCTA+AGG + chr3_3:47927080-47927099 Msa0455260:CDS 25.0%
!! ATAAACCATCTTTTTGCTAA+GGG + chr3_3:47927081-47927100 Msa0455260:CDS 25.0%
! TTATAGCTGTTGTTATGATA+TGG + chr3_3:47927178-47927197 Msa0455260:CDS 25.0%
! TATAGCTGTTGTTATGATAT+GGG + chr3_3:47927179-47927198 Msa0455260:CDS 25.0%
!! ATTTTGCCTCATTTCAATTT+TGG + chr3_3:47927358-47927377 Msa0455260:three_prime_UTR 25.0%
!!! TCATAATTTCAAGTTTCCAA+TGG - chr3_3:47927432-47927451 None:intergenic 25.0%
! TTCAACCAAAAAAAGATAAG+TGG + chr3_3:47925995-47926014 Msa0455260:five_prime_UTR 25.0%
! ATTATATTCTTCCAACTGTA+AGG - chr3_3:47926084-47926103 None:intergenic 25.0%
! AATATTCACATCTCTATAGT+TGG + chr3_3:47926101-47926120 Msa0455260:five_prime_UTR 25.0%
! CTCTATAGTTGGATAAAAAT+CGG + chr3_3:47926112-47926131 Msa0455260:five_prime_UTR 25.0%
!!! ACAAAGCTACTTTCTTTTTT+TGG + chr3_3:47926487-47926506 Msa0455260:five_prime_UTR 25.0%
!! AATAAACCATCTTTTTGCTA+AGG + chr3_3:47927080-47927099 Msa0455260:CDS 25.0%
!! ATAAACCATCTTTTTGCTAA+GGG + chr3_3:47927081-47927100 Msa0455260:CDS 25.0%
! TTATAGCTGTTGTTATGATA+TGG + chr3_3:47927178-47927197 Msa0455260:CDS 25.0%
! TATAGCTGTTGTTATGATAT+GGG + chr3_3:47927179-47927198 Msa0455260:CDS 25.0%
!! ATTTTGCCTCATTTCAATTT+TGG + chr3_3:47927358-47927377 Msa0455260:three_prime_UTR 25.0%
!!! TCATAATTTCAAGTTTCCAA+TGG - chr3_3:47927432-47927451 None:intergenic 25.0%
!!! GTCAACCACTTATCTTTTTT+TGG - chr3_3:47926003-47926022 None:intergenic 30.0%
!!! TTTTTTTGGTGCAAATTGCA+GGG + chr3_3:47926501-47926520 Msa0455260:five_prime_UTR 30.0%
TAATTCTCAGTCACAATATC+AGG + chr3_3:47926550-47926569 Msa0455260:five_prime_UTR 30.0%
CAGTTAAATTAGTGATGACA+AGG - chr3_3:47926635-47926654 None:intergenic 30.0%
GGAATCTAATACAATTCCAA+TGG - chr3_3:47926983-47927002 None:intergenic 30.0%
AGATATAGCGAAAATCCAAT+CGG - chr3_3:47927025-47927044 None:intergenic 30.0%
! TTGGATTTTCGCTATATCTA+TGG + chr3_3:47927026-47927045 Msa0455260:CDS 30.0%
! TGGATTTTCGCTATATCTAT+GGG + chr3_3:47927027-47927046 Msa0455260:CDS 30.0%
CCTTATAAAACAAATCCACT+TGG - chr3_3:47927301-47927320 None:intergenic 30.0%
!!! CCAAGTGGATTTGTTTTATA+AGG + chr3_3:47927298-47927317 Msa0455260:three_prime_UTR 30.0%
! TTTCCATACTCATTTTCCAT+TGG + chr3_3:47927413-47927432 Msa0455260:three_prime_UTR 30.0%
TTTCCAATGGAAAATGAGTA+TGG - chr3_3:47927419-47927438 None:intergenic 30.0%
TCACATGATACTTATATGAC+TGG - chr3_3:47927466-47927485 None:intergenic 30.0%
!!! TTTTTAGCTTCTGAAAACCA+CGG - chr3_3:47927585-47927604 None:intergenic 30.0%
!!! GTCAACCACTTATCTTTTTT+TGG - chr3_3:47926003-47926022 None:intergenic 30.0%
!!! TTTTTTTGGTGCAAATTGCA+GGG + chr3_3:47926501-47926520 Msa0455260:five_prime_UTR 30.0%
TAATTCTCAGTCACAATATC+AGG + chr3_3:47926550-47926569 Msa0455260:five_prime_UTR 30.0%
CAGTTAAATTAGTGATGACA+AGG - chr3_3:47926635-47926654 None:intergenic 30.0%
GGAATCTAATACAATTCCAA+TGG - chr3_3:47926983-47927002 None:intergenic 30.0%
AGATATAGCGAAAATCCAAT+CGG - chr3_3:47927025-47927044 None:intergenic 30.0%
! TTGGATTTTCGCTATATCTA+TGG + chr3_3:47927026-47927045 Msa0455260:CDS 30.0%
! TGGATTTTCGCTATATCTAT+GGG + chr3_3:47927027-47927046 Msa0455260:CDS 30.0%
CCTTATAAAACAAATCCACT+TGG - chr3_3:47927301-47927320 None:intergenic 30.0%
!!! CCAAGTGGATTTGTTTTATA+AGG + chr3_3:47927298-47927317 Msa0455260:three_prime_UTR 30.0%
! TTTCCATACTCATTTTCCAT+TGG + chr3_3:47927413-47927432 Msa0455260:three_prime_UTR 30.0%
TTTCCAATGGAAAATGAGTA+TGG - chr3_3:47927419-47927438 None:intergenic 30.0%
TCACATGATACTTATATGAC+TGG - chr3_3:47927466-47927485 None:intergenic 30.0%
!!! TTTTTAGCTTCTGAAAACCA+CGG - chr3_3:47927585-47927604 None:intergenic 30.0%
! ACAAGACTTTGAAAAGTCCA+AGG - chr3_3:47926031-47926050 None:intergenic 35.0%
GTGCTGTACAAAGATATTTG+TGG + chr3_3:47926049-47926068 Msa0455260:five_prime_UTR 35.0%
GTTAGACAAGGTGAATCTTA+AGG - chr3_3:47926467-47926486 None:intergenic 35.0%
!! AAGTAGCTTTGTGTTAGACA+AGG - chr3_3:47926479-47926498 None:intergenic 35.0%
!!! CTTTTTTTGGTGCAAATTGC+AGG + chr3_3:47926500-47926519 Msa0455260:five_prime_UTR 35.0%
!!! TTTTTTGGTGCAAATTGCAG+GGG + chr3_3:47926502-47926521 Msa0455260:five_prime_UTR 35.0%
GAAAACAGAATGAGCACAAA+GGG - chr3_3:47926770-47926789 None:intergenic 35.0%
TGTATTAGATTCCACAACAC+AGG + chr3_3:47926990-47927009 Msa0455260:CDS 35.0%
GTATTAGATTCCACAACACA+GGG + chr3_3:47926991-47927010 Msa0455260:CDS 35.0%
CATAACCCTTAGCAAAAAGA+TGG - chr3_3:47927089-47927108 None:intergenic 35.0%
AAACTTCATATAAGCCGAGT+CGG - chr3_3:47927133-47927152 None:intergenic 35.0%
!!! TCTTGCTTCTGAAGCATTTT+AGG - chr3_3:47927208-47927227 None:intergenic 35.0%
!!! ACGTTTTTTAGTTAGCCAAG+TGG + chr3_3:47927283-47927302 Msa0455260:three_prime_UTR 35.0%
GACTTGCCAAAATTGAAATG+AGG - chr3_3:47927367-47927386 None:intergenic 35.0%
AAACTTGTATCCTGCATCTA+TGG - chr3_3:47927396-47927415 None:intergenic 35.0%
TCTGAAAACCACGGAAAAAT+GGG - chr3_3:47927576-47927595 None:intergenic 35.0%
! TTCTGAAAACCACGGAAAAA+TGG - chr3_3:47927577-47927596 None:intergenic 35.0%
AAAATAGATAGTCGCGTTCA+CGG - chr3_3:47927629-47927648 None:intergenic 35.0%
! CAATCGTTAAGTGCATGTTT+TGG - chr3_3:47927653-47927672 None:intergenic 35.0%
! ACAAGACTTTGAAAAGTCCA+AGG - chr3_3:47926031-47926050 None:intergenic 35.0%
GTGCTGTACAAAGATATTTG+TGG + chr3_3:47926049-47926068 Msa0455260:five_prime_UTR 35.0%
GTTAGACAAGGTGAATCTTA+AGG - chr3_3:47926467-47926486 None:intergenic 35.0%
!! AAGTAGCTTTGTGTTAGACA+AGG - chr3_3:47926479-47926498 None:intergenic 35.0%
!!! CTTTTTTTGGTGCAAATTGC+AGG + chr3_3:47926500-47926519 Msa0455260:five_prime_UTR 35.0%
!!! TTTTTTGGTGCAAATTGCAG+GGG + chr3_3:47926502-47926521 Msa0455260:five_prime_UTR 35.0%
GAAAACAGAATGAGCACAAA+GGG - chr3_3:47926770-47926789 None:intergenic 35.0%
TGTATTAGATTCCACAACAC+AGG + chr3_3:47926990-47927009 Msa0455260:CDS 35.0%
GTATTAGATTCCACAACACA+GGG + chr3_3:47926991-47927010 Msa0455260:CDS 35.0%
CATAACCCTTAGCAAAAAGA+TGG - chr3_3:47927089-47927108 None:intergenic 35.0%
AAACTTCATATAAGCCGAGT+CGG - chr3_3:47927133-47927152 None:intergenic 35.0%
!!! TCTTGCTTCTGAAGCATTTT+AGG - chr3_3:47927208-47927227 None:intergenic 35.0%
!!! ACGTTTTTTAGTTAGCCAAG+TGG + chr3_3:47927283-47927302 Msa0455260:three_prime_UTR 35.0%
GACTTGCCAAAATTGAAATG+AGG - chr3_3:47927367-47927386 None:intergenic 35.0%
AAACTTGTATCCTGCATCTA+TGG - chr3_3:47927396-47927415 None:intergenic 35.0%
TCTGAAAACCACGGAAAAAT+GGG - chr3_3:47927576-47927595 None:intergenic 35.0%
! TTCTGAAAACCACGGAAAAA+TGG - chr3_3:47927577-47927596 None:intergenic 35.0%
AAAATAGATAGTCGCGTTCA+CGG - chr3_3:47927629-47927648 None:intergenic 35.0%
! CAATCGTTAAGTGCATGTTT+TGG - chr3_3:47927653-47927672 None:intergenic 35.0%
!! TAAGTGGTTGACTTGATCCT+TGG + chr3_3:47926011-47926030 Msa0455260:five_prime_UTR 40.0%
CTTCCAACTGTAAGGAATCT+AGG - chr3_3:47926076-47926095 None:intergenic 40.0%
TTGTGTTAACAGAGTTCTGC+TGG + chr3_3:47926667-47926686 Msa0455260:intron 40.0%
CTTGCACCTAGTAGTTCAAT+CGG + chr3_3:47926706-47926725 Msa0455260:five_prime_UTR 40.0%
GTATCTCCGATTGAACTACT+AGG - chr3_3:47926715-47926734 None:intergenic 40.0%
CGAAAACAGAATGAGCACAA+AGG - chr3_3:47926771-47926790 None:intergenic 40.0%
! TTGTGCTCATTCTGTTTTCG+AGG + chr3_3:47926771-47926790 Msa0455260:five_prime_UTR 40.0%
! TGTGCTCATTCTGTTTTCGA+GGG + chr3_3:47926772-47926791 Msa0455260:five_prime_UTR 40.0%
!! GTTTTCGAGGGTTTAGCAAT+TGG + chr3_3:47926784-47926803 Msa0455260:five_prime_UTR 40.0%
CATGATAGTAGAGGTCGATT+AGG - chr3_3:47926913-47926932 None:intergenic 40.0%
TTCGCAATCTCTAGTCCAAT+TGG + chr3_3:47926952-47926971 Msa0455260:CDS 40.0%
AATCTCTAGTCCAATTGGTG+TGG + chr3_3:47926957-47926976 Msa0455260:CDS 40.0%
! ATATCTATGGGTCTAGCTTG+TGG + chr3_3:47927039-47927058 Msa0455260:CDS 40.0%
TGTGCCTCACAAACATTCAA+AGG + chr3_3:47927107-47927126 Msa0455260:CDS 40.0%
! AAGTTTCTTGCAGTGTCGTT+GGG + chr3_3:47927147-47927166 Msa0455260:CDS 40.0%
TATCCTGCATCTATGGAACA+GGG - chr3_3:47927389-47927408 None:intergenic 40.0%
AAAGATATTCACCGCGTGTT+TGG + chr3_3:47927515-47927534 Msa0455260:three_prime_UTR 40.0%
CTGAAAACCACGGAAAAATG+GGG - chr3_3:47927575-47927594 None:intergenic 40.0%
!! TAAGTGGTTGACTTGATCCT+TGG + chr3_3:47926011-47926030 Msa0455260:five_prime_UTR 40.0%
CTTCCAACTGTAAGGAATCT+AGG - chr3_3:47926076-47926095 None:intergenic 40.0%
TTGTGTTAACAGAGTTCTGC+TGG + chr3_3:47926667-47926686 Msa0455260:intron 40.0%
CTTGCACCTAGTAGTTCAAT+CGG + chr3_3:47926706-47926725 Msa0455260:five_prime_UTR 40.0%
GTATCTCCGATTGAACTACT+AGG - chr3_3:47926715-47926734 None:intergenic 40.0%
CGAAAACAGAATGAGCACAA+AGG - chr3_3:47926771-47926790 None:intergenic 40.0%
! TTGTGCTCATTCTGTTTTCG+AGG + chr3_3:47926771-47926790 Msa0455260:five_prime_UTR 40.0%
! TGTGCTCATTCTGTTTTCGA+GGG + chr3_3:47926772-47926791 Msa0455260:five_prime_UTR 40.0%
!! GTTTTCGAGGGTTTAGCAAT+TGG + chr3_3:47926784-47926803 Msa0455260:five_prime_UTR 40.0%
CATGATAGTAGAGGTCGATT+AGG - chr3_3:47926913-47926932 None:intergenic 40.0%
TTCGCAATCTCTAGTCCAAT+TGG + chr3_3:47926952-47926971 Msa0455260:CDS 40.0%
AATCTCTAGTCCAATTGGTG+TGG + chr3_3:47926957-47926976 Msa0455260:CDS 40.0%
! ATATCTATGGGTCTAGCTTG+TGG + chr3_3:47927039-47927058 Msa0455260:CDS 40.0%
TGTGCCTCACAAACATTCAA+AGG + chr3_3:47927107-47927126 Msa0455260:CDS 40.0%
! AAGTTTCTTGCAGTGTCGTT+GGG + chr3_3:47927147-47927166 Msa0455260:CDS 40.0%
TATCCTGCATCTATGGAACA+GGG - chr3_3:47927389-47927408 None:intergenic 40.0%
AAAGATATTCACCGCGTGTT+TGG + chr3_3:47927515-47927534 Msa0455260:three_prime_UTR 40.0%
CTGAAAACCACGGAAAAATG+GGG - chr3_3:47927575-47927594 None:intergenic 40.0%
GGACCTAGATTCCTTACAGT+TGG + chr3_3:47926070-47926089 Msa0455260:five_prime_UTR 45.0%
! GCGGTCTTGTCATGTGAATT+TGG + chr3_3:47926275-47926294 Msa0455260:five_prime_UTR 45.0%
CACGAACATGACAATGACTG+TGG - chr3_3:47926331-47926350 None:intergenic 45.0%
AGGTGCAAGATCAGTGTCAT+TGG - chr3_3:47926695-47926714 None:intergenic 45.0%
CAGACGCATGGAAAGCTTTA+TGG + chr3_3:47926824-47926843 Msa0455260:five_prime_UTR 45.0%
AATATTCGCAGCCATTGCCA+TGG + chr3_3:47926864-47926883 Msa0455260:exon 45.0%
ATATTCGCAGCCATTGCCAT+GGG + chr3_3:47926865-47926884 Msa0455260:exon 45.0%
GTCGATTAGGAACCATCCTA+AGG - chr3_3:47926900-47926919 None:intergenic 45.0%
TAGGCTGCACATGATAGTAG+AGG - chr3_3:47926922-47926941 None:intergenic 45.0%
! GATTGCGAATGCAAAAGCGT+AGG - chr3_3:47926941-47926960 None:intergenic 45.0%
ATTCCAATGGCCACACCAAT+TGG - chr3_3:47926970-47926989 None:intergenic 45.0%
TCGGCCTTTGAATGTTTGTG+AGG - chr3_3:47927114-47927133 None:intergenic 45.0%
CAAACATTCAAAGGCCGACT+CGG + chr3_3:47927116-47927135 Msa0455260:CDS 45.0%
GAAGTTTCTTGCAGTGTCGT+TGG + chr3_3:47927146-47927165 Msa0455260:CDS 45.0%
GTATCCTGCATCTATGGAAC+AGG - chr3_3:47927390-47927409 None:intergenic 45.0%
GGACCTAGATTCCTTACAGT+TGG + chr3_3:47926070-47926089 Msa0455260:five_prime_UTR 45.0%
! GCGGTCTTGTCATGTGAATT+TGG + chr3_3:47926275-47926294 Msa0455260:five_prime_UTR 45.0%
CACGAACATGACAATGACTG+TGG - chr3_3:47926331-47926350 None:intergenic 45.0%
AGGTGCAAGATCAGTGTCAT+TGG - chr3_3:47926695-47926714 None:intergenic 45.0%
CAGACGCATGGAAAGCTTTA+TGG + chr3_3:47926824-47926843 Msa0455260:five_prime_UTR 45.0%
AATATTCGCAGCCATTGCCA+TGG + chr3_3:47926864-47926883 Msa0455260:exon 45.0%
ATATTCGCAGCCATTGCCAT+GGG + chr3_3:47926865-47926884 Msa0455260:exon 45.0%
GTCGATTAGGAACCATCCTA+AGG - chr3_3:47926900-47926919 None:intergenic 45.0%
TAGGCTGCACATGATAGTAG+AGG - chr3_3:47926922-47926941 None:intergenic 45.0%
! GATTGCGAATGCAAAAGCGT+AGG - chr3_3:47926941-47926960 None:intergenic 45.0%
ATTCCAATGGCCACACCAAT+TGG - chr3_3:47926970-47926989 None:intergenic 45.0%
TCGGCCTTTGAATGTTTGTG+AGG - chr3_3:47927114-47927133 None:intergenic 45.0%
CAAACATTCAAAGGCCGACT+CGG + chr3_3:47927116-47927135 Msa0455260:CDS 45.0%
GAAGTTTCTTGCAGTGTCGT+TGG + chr3_3:47927146-47927165 Msa0455260:CDS 45.0%
GTATCCTGCATCTATGGAAC+AGG - chr3_3:47927390-47927409 None:intergenic 45.0%
CAAATTGCAGGGGCAGACAA+AGG + chr3_3:47926512-47926531 Msa0455260:five_prime_UTR 50.0%
GCAGACAAAGGAAGGAGCAA+CGG + chr3_3:47926524-47926543 Msa0455260:five_prime_UTR 50.0%
!! CCATGCGTCTGCTTTTGTCA+CGG - chr3_3:47926815-47926834 None:intergenic 50.0%
AGTCCAATTGGTGTGGCCAT+TGG + chr3_3:47926964-47926983 Msa0455260:CDS 50.0%
TTCCACAACACAGGGTCATG+TGG + chr3_3:47926999-47927018 Msa0455260:CDS 50.0%
! CTTGCAGTGTCGTTGGGAAT+AGG + chr3_3:47927153-47927172 Msa0455260:CDS 50.0%
AGTCCCTGTTCCATAGATGC+AGG + chr3_3:47927383-47927402 Msa0455260:three_prime_UTR 50.0%
TTGCCACGAAACCAAACACG+CGG - chr3_3:47927529-47927548 None:intergenic 50.0%
ACCACGGAAAAATGGGGCTT+GGG - chr3_3:47927569-47927588 None:intergenic 50.0%
AACCACGGAAAAATGGGGCT+TGG - chr3_3:47927570-47927589 None:intergenic 50.0%
CAAATTGCAGGGGCAGACAA+AGG + chr3_3:47926512-47926531 Msa0455260:five_prime_UTR 50.0%
GCAGACAAAGGAAGGAGCAA+CGG + chr3_3:47926524-47926543 Msa0455260:five_prime_UTR 50.0%
!! CCATGCGTCTGCTTTTGTCA+CGG - chr3_3:47926815-47926834 None:intergenic 50.0%
AGTCCAATTGGTGTGGCCAT+TGG + chr3_3:47926964-47926983 Msa0455260:CDS 50.0%
TTCCACAACACAGGGTCATG+TGG + chr3_3:47926999-47927018 Msa0455260:CDS 50.0%
! CTTGCAGTGTCGTTGGGAAT+AGG + chr3_3:47927153-47927172 Msa0455260:CDS 50.0%
AGTCCCTGTTCCATAGATGC+AGG + chr3_3:47927383-47927402 Msa0455260:three_prime_UTR 50.0%
TTGCCACGAAACCAAACACG+CGG - chr3_3:47927529-47927548 None:intergenic 50.0%
ACCACGGAAAAATGGGGCTT+GGG - chr3_3:47927569-47927588 None:intergenic 50.0%
AACCACGGAAAAATGGGGCT+TGG - chr3_3:47927570-47927589 None:intergenic 50.0%
TTGCAGGGGCAGACAAAGGA+AGG + chr3_3:47926516-47926535 Msa0455260:five_prime_UTR 55.0%
CCGTGACAAAAGCAGACGCA+TGG + chr3_3:47926812-47926831 Msa0455260:five_prime_UTR 55.0%
GAGAGCAATGCCCATGGCAA+TGG - chr3_3:47926878-47926897 None:intergenic 55.0%
CCTAAGGAGAGCAATGCCCA+TGG - chr3_3:47926884-47926903 None:intergenic 55.0%
! CCATGGGCATTGCTCTCCTT+AGG + chr3_3:47926881-47926900 Msa0455260:exon 55.0%
! GGGCATTGCTCTCCTTAGGA+TGG + chr3_3:47926885-47926904 Msa0455260:CDS 55.0%
! TCACCGCGTGTTTGGTTTCG+TGG + chr3_3:47927523-47927542 Msa0455260:three_prime_UTR 55.0%
!! TCCCAAGCCCCATTTTTCCG+TGG + chr3_3:47927565-47927584 Msa0455260:three_prime_UTR 55.0%
TTGCAGGGGCAGACAAAGGA+AGG + chr3_3:47926516-47926535 Msa0455260:five_prime_UTR 55.0%
CCGTGACAAAAGCAGACGCA+TGG + chr3_3:47926812-47926831 Msa0455260:five_prime_UTR 55.0%
GAGAGCAATGCCCATGGCAA+TGG - chr3_3:47926878-47926897 None:intergenic 55.0%
CCTAAGGAGAGCAATGCCCA+TGG - chr3_3:47926884-47926903 None:intergenic 55.0%
! CCATGGGCATTGCTCTCCTT+AGG + chr3_3:47926881-47926900 Msa0455260:exon 55.0%
! GGGCATTGCTCTCCTTAGGA+TGG + chr3_3:47926885-47926904 Msa0455260:CDS 55.0%
! TCACCGCGTGTTTGGTTTCG+TGG + chr3_3:47927523-47927542 Msa0455260:three_prime_UTR 55.0%
!! TCCCAAGCCCCATTTTTCCG+TGG + chr3_3:47927565-47927584 Msa0455260:three_prime_UTR 55.0%
GGCCACATGACCCTGTGTTG+TGG - chr3_3:47927004-47927023 None:intergenic 60.0%
CACAGGGTCATGTGGCCGAT+TGG + chr3_3:47927007-47927026 Msa0455260:CDS 60.0%
GGCCACATGACCCTGTGTTG+TGG - chr3_3:47927004-47927023 None:intergenic 60.0%
CACAGGGTCATGTGGCCGAT+TGG + chr3_3:47927007-47927026 Msa0455260:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 47925979 47927700 47925979 ID=Msa0455260;Name=Msa0455260
chr3_3 mRNA 47925979 47927700 47925979 ID=Msa0455260-mRNA-1;Parent=Msa0455260;Name=Msa0455260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=797|1|1|1|1|1|2|491|108
chr3_3 exon 47925979 47926571 47925979 ID=Msa0455260-mRNA-1:exon:8883;Parent=Msa0455260-mRNA-1
chr3_3 exon 47926679 47927700 47926679 ID=Msa0455260-mRNA-1:exon:8884;Parent=Msa0455260-mRNA-1
chr3_3 five_prime_UTR 47925979 47926571 47925979 ID=Msa0455260-mRNA-1:five_prime_utr;Parent=Msa0455260-mRNA-1
chr3_3 five_prime_UTR 47926679 47926882 47926679 ID=Msa0455260-mRNA-1:five_prime_utr;Parent=Msa0455260-mRNA-1
chr3_3 CDS 47926883 47927209 47926883 ID=Msa0455260-mRNA-1:cds;Parent=Msa0455260-mRNA-1
chr3_3 three_prime_UTR 47927210 47927700 47927210 ID=Msa0455260-mRNA-1:three_prime_utr;Parent=Msa0455260-mRNA-1
Gene Sequence

>Msa0455260

ATGGGCATTGCTCTCCTTAGGATGGTTCCTAATCGACCTCTACTATCATGTGCAGCCTACGCTTTTGCATTCGCAATCTCTAGTCCAATTGGTGTGGCCATTGGAATTGTATTAGATTCCACAACACAGGGTCATGTGGCCGATTGGATTTTCGCTATATCTATGGGTCTAGCTTGTGGTGTGTTTATATATGTTTCAATAAACCATCTTTTTGCTAAGGGTTATGTGCCTCACAAACATTCAAAGGCCGACTCGGCTTATATGAAGTTTCTTGCAGTGTCGTTGGGAATAGGAGTTATAGCTGTTGTTATGATATGGGATACCTAA

Protein sequence

>Msa0455260

MGIALLRMVPNRPLLSCAAYAFAFAISSPIGVAIGIVLDSTTQGHVADWIFAISMGLACGVFIYVSINHLFAKGYVPHKHSKADSAYMKFLAVSLGIGVIAVVMIWDT*