AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131050 MtrunA17_Chr1g0199671 98.792 331 4 0 1 331 1 331 0.0 674
Msa0131050 MtrunA17_Chr1g0213161 56.202 258 77 10 74 329 10 233 9.93e-75 229
Msa0131050 MtrunA17_Chr2g0326771 46.774 186 70 6 121 306 124 280 4.54e-43 150
Msa0131050 MtrunA17_Chr1g0146231 34.783 322 133 11 9 306 30 298 3.51e-38 139
Msa0131050 MtrunA17_Chr3g0140331 34.228 298 134 8 17 306 74 317 1.44e-36 135
Msa0131050 MtrunA17_Chr4g0028961 65.957 94 27 1 238 331 228 316 4.06e-36 132
Msa0131050 MtrunA17_Chr7g0253101 45.455 165 82 4 143 306 95 252 3.30e-35 129
Msa0131050 MtrunA17_Chr4g0035891 57.692 104 33 2 203 306 183 275 1.37e-34 128
Msa0131050 MtrunA17_Chr6g0461591 36.015 261 122 9 67 308 24 258 1.81e-34 127
Msa0131050 MtrunA17_Chr5g0404981 35.766 274 121 10 48 308 135 366 6.39e-34 128
Msa0131050 MtrunA17_Chr3g0145121 72.603 73 19 1 234 306 208 279 3.81e-33 124
Msa0131050 MtrunA17_Chr8g0340401 81.538 65 12 0 242 306 226 290 7.35e-33 124
Msa0131050 MtrunA17_Chr8g0372291 62.366 93 26 3 216 308 201 284 1.58e-31 119
Msa0131050 MtrunA17_Chr1g0169431 80.000 65 13 0 242 306 172 236 1.65e-31 118
Msa0131050 MtrunA17_Chr5g0395391 55.238 105 45 2 203 306 231 334 2.15e-31 120
Msa0131050 MtrunA17_Chr5g0395391 54.000 100 44 2 207 305 133 231 2.67e-28 112
Msa0131050 MtrunA17_Chr7g0232671 61.290 62 24 0 242 303 187 248 1.05e-20 89.7
Msa0131050 MtrunA17_Chr7g0232701 58.065 62 26 0 242 303 73 134 1.75e-19 83.2
Msa0131050 MtrunA17_Chr7g0232681 36.567 134 65 2 175 303 75 193 6.49e-19 83.6
Msa0131050 MtrunA17_Chr7g0267351 55.844 77 33 1 177 253 36 111 5.98e-17 75.5
Msa0131050 MtrunA17_Chr5g0404131 52.083 48 23 0 227 274 177 224 1.69e-11 64.3
Msa0131050 MtrunA17_Chr7g0271861 67.647 34 11 0 244 277 24 57 8.87e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131050 AT3G54810.1 71.875 96 20 2 240 328 227 322 2.51e-42 149
Msa0131050 AT3G54810.2 71.875 96 20 2 240 328 227 322 2.51e-42 149
Msa0131050 AT1G08010.2 40.254 236 111 5 85 318 89 296 3.30e-42 148
Msa0131050 AT1G08010.1 40.254 236 111 5 85 318 89 296 3.30e-42 148
Msa0131050 AT1G08010.3 40.254 236 111 5 85 318 89 296 3.30e-42 148
Msa0131050 AT5G25830.1 40.249 241 113 8 67 306 73 283 6.52e-38 138
Msa0131050 AT1G08000.2 42.051 195 88 3 115 309 116 285 2.69e-37 135
Msa0131050 AT1G08000.1 42.051 195 88 3 115 309 116 285 2.69e-37 135
Msa0131050 AT4G32890.1 34.641 306 120 12 17 306 20 261 7.29e-37 134
Msa0131050 AT5G66320.2 38.636 264 123 9 55 315 95 322 2.34e-36 134
Msa0131050 AT5G66320.1 38.636 264 123 9 55 315 95 322 2.34e-36 134
Msa0131050 AT3G51080.1 71.053 76 21 1 242 317 221 295 1.06e-31 121
Msa0131050 AT3G24050.1 78.462 65 14 0 242 306 194 258 1.10e-31 120
Msa0131050 AT4G36240.1 54.545 99 43 1 208 306 132 228 2.93e-31 118
Msa0131050 AT3G60530.1 74.242 66 17 0 241 306 157 222 9.89e-31 116
Msa0131050 AT2G28340.1 65.333 75 26 0 244 318 193 267 1.25e-30 117
Msa0131050 AT2G45050.1 72.727 66 18 0 241 306 178 243 3.09e-30 116
Msa0131050 AT4G34680.1 63.158 76 28 0 242 317 180 255 5.59e-29 112
Msa0131050 AT4G34680.2 63.158 76 28 0 242 317 180 255 5.59e-29 112
Msa0131050 AT3G45170.1 40.000 140 79 3 168 306 44 179 4.83e-28 108
Msa0131050 AT5G26930.1 54.545 44 18 1 234 277 20 61 4.74e-11 60.1

Find 129 sgRNAs with CRISPR-Local

Find 544 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGTGAAATTGAAATTA+AGG 0.183082 1_3:-61609124 None:intergenic
CTAGCAGCAGGCCGGTATTC+GGG 0.281895 1_3:-61612535 None:intergenic
AAATGAATCGTCCACAATAT+TGG 0.301923 1_3:-61611942 None:intergenic
AATAAACTAAGCTTAGTTTC+AGG 0.316869 1_3:+61609146 Msa0131050:five_prime_UTR
ACAACTCATTGGCGAGTATC+TGG 0.323132 1_3:+61610349 Msa0131050:CDS
CTGCTTTCAAGGACAGAAAT+AGG 0.331261 1_3:-61612061 None:intergenic
TTGACTTGCAGAGAAGAAAA+TGG 0.332195 1_3:+61610212 Msa0131050:intron
GTTCGAAGATCTTCTTTCAT+TGG 0.338071 1_3:+61611910 Msa0131050:intron
GTCTCTCCAGAAGAGAGCTT+TGG 0.342561 1_3:-61612319 None:intergenic
CAATGCATGCATTTCCTAAC+AGG 0.350621 1_3:-61612415 None:intergenic
AAGGCGAGAACATTGGAGTT+TGG 0.360098 1_3:-61612655 None:intergenic
ACAGAAGGAAAGGGAAGAAA+AGG 0.361946 1_3:+61612841 Msa0131050:three_prime_UTR
AGCAGGAACTGCTGCTTTCA+AGG 0.362822 1_3:-61612072 None:intergenic
ACTAGCAGCAGGCCGGTATT+CGG 0.363594 1_3:-61612536 None:intergenic
TCTCTACTCACCGGATCAAC+GGG 0.368770 1_3:-61610432 None:intergenic
GTCCGCAAGGCACGGGGATG+GGG 0.378251 1_3:-61612123 None:intergenic
GAAGAAAAGGGTAGGATCTT+AGG 0.378964 1_3:+61612854 Msa0131050:three_prime_UTR
GGCTGTGGGGCGTGGACGCT+TGG 0.384746 1_3:-61612155 None:intergenic
TATCCTTGCATCTCATTTCA+AGG 0.385918 1_3:-61612603 None:intergenic
CAATGGAGGGCAGGTCCAAT+GGG 0.390212 1_3:+61612457 Msa0131050:CDS
CGTCCGCAAGGCACGGGGAT+GGG 0.396980 1_3:-61612124 None:intergenic
GAGGTCTGAAGTACTATTGC+CGG 0.397375 1_3:-61610397 None:intergenic
GCACTCCAATTCGCACAAAA+AGG 0.399415 1_3:+61612579 Msa0131050:CDS
AACTAAGCTTAGTTTATTTG+AGG 0.403480 1_3:-61609141 None:intergenic
ACAATGGAGGGCAGGTCCAA+TGG 0.404651 1_3:+61612456 Msa0131050:CDS
CCTTGGAATACAACATTTGA+AGG 0.412271 1_3:+61612674 Msa0131050:CDS
TTGGTTTCTTGACAATAATC+CGG 0.416836 1_3:-61612300 None:intergenic
TGCCCTCCATTGTGGAGTCT+TGG 0.422561 1_3:-61612446 None:intergenic
CGTGCACGTCCGCAAGGCAC+GGG 0.424581 1_3:-61612130 None:intergenic
AAGAAACCAAAGCTCTCTTC+TGG 0.429167 1_3:+61612313 Msa0131050:CDS
TGAGAAGAGAATGGTAGAAA+AGG 0.440839 1_3:-61609092 None:intergenic
CCCTACTTCCTCTTCTGTTG+AGG 0.447338 1_3:+61612210 Msa0131050:CDS
TTCTGTTCGCCACTGTCAGC+TGG 0.447903 1_3:-61612382 None:intergenic
AGAATGGTTCACTACCTGTT+AGG 0.449879 1_3:+61612401 Msa0131050:CDS
GCTGTCAGCAAGGAGGACTC+TGG 0.452116 1_3:+61612013 Msa0131050:CDS
AAACTCCAATGTTCTCGCCT+TGG 0.452478 1_3:+61612657 Msa0131050:CDS
GAAAGCAGCAGTTCCTGCTC+TGG 0.453160 1_3:+61612076 Msa0131050:CDS
TGCGAATTGGAGTGCACAGC+TGG 0.458877 1_3:-61612571 None:intergenic
TTGTTTCATTTCAATCACTC+TGG 0.458923 1_3:+61613033 Msa0131050:three_prime_UTR
AGGGCTGGAATGGGGAGAAT+AGG 0.459690 1_3:+61612809 Msa0131050:three_prime_UTR
ATTAATAGAACAGAAGGAAA+GGG 0.461623 1_3:+61612832 Msa0131050:three_prime_UTR
AAAAGGTGTGAGAGAGAGAG+AGG 0.461739 1_3:-61609075 None:intergenic
ATCTGAAGACAGCGCCTTGG+TGG 0.463733 1_3:-61612257 None:intergenic
GGCGGAGCTCCCCGTTGATC+CGG 0.465097 1_3:+61610422 Msa0131050:CDS
TGGTTTCTTGACAATAATCC+GGG 0.466726 1_3:-61612299 None:intergenic
TGAAGGGAACTGAGCCTAGT+TGG 0.467108 1_3:+61612691 Msa0131050:exon
CAGAAGGAAAGGGAAGAAAA+GGG 0.470054 1_3:+61612842 Msa0131050:three_prime_UTR
GCGTGCACGTCCGCAAGGCA+CGG 0.472888 1_3:-61612131 None:intergenic
TGCGGTGTACGCTACAAGTC+GGG 0.473402 1_3:+61612502 Msa0131050:CDS
GCGGTGTCAACGTCGTCGAC+GGG 0.476293 1_3:-61610294 None:intergenic
GGATTGAAGGCTGTGGGGCG+TGG 0.478430 1_3:-61612163 None:intergenic
CCTTCAAATGTTGTATTCCA+AGG 0.482354 1_3:-61612674 None:intergenic
AGCGGTGTCAACGTCGTCGA+CGG 0.482359 1_3:-61610295 None:intergenic
GCCGACTATTCCCCGAATAC+CGG 0.484840 1_3:+61612524 Msa0131050:CDS
CGCGGCAAACTACAACTCAT+TGG 0.485302 1_3:+61610338 Msa0131050:CDS
CTCTCTACTCACCGGATCAA+CGG 0.485631 1_3:-61610433 None:intergenic
AGATCTTCTTTCATTGGAGT+GGG 0.485791 1_3:+61611916 Msa0131050:CDS
AAGATCTTCTTTCATTGGAG+TGG 0.486353 1_3:+61611915 Msa0131050:CDS
ACGTCCGCAAGGCACGGGGA+TGG 0.486480 1_3:-61612125 None:intergenic
CCTCAACAGAAGAGGAAGTA+GGG 0.487341 1_3:-61612210 None:intergenic
AATAGGATTAATAGAACAGA+AGG 0.488681 1_3:+61612826 Msa0131050:three_prime_UTR
GTTGTAGTTTGCCGCGGAGG+AGG 0.494768 1_3:-61610331 None:intergenic
CATGGCAGAACGAGGATTGA+AGG 0.499510 1_3:-61612176 None:intergenic
AGCAGCAGTTCCTGCTCTGG+TGG 0.510966 1_3:+61612079 Msa0131050:CDS
GCCTTGGTGGAGATAACATT+AGG 0.511767 1_3:-61612244 None:intergenic
AGAACGAGGATTGAAGGCTG+TGG 0.514782 1_3:-61612170 None:intergenic
GATTAATAGAACAGAAGGAA+AGG 0.514944 1_3:+61612831 Msa0131050:three_prime_UTR
TTTAGATCACTTAGGTCGGT+AGG 0.519782 1_3:+61612886 Msa0131050:three_prime_UTR
GAACGAGGATTGAAGGCTGT+GGG 0.520494 1_3:-61612169 None:intergenic
AAAGAGTAGTGAGAAGAGAA+TGG 0.524359 1_3:-61609101 None:intergenic
ATTGGACCTGCCCTCCATTG+TGG 0.524395 1_3:-61612454 None:intergenic
AACACCGAGTCAGACTCATT+TGG 0.524475 1_3:-61610372 None:intergenic
GGAGGGCAATGAAGCGGCAG+CGG 0.526729 1_3:-61610313 None:intergenic
GCCGGTATTCGGGGAATAGT+CGG 0.526797 1_3:-61612525 None:intergenic
CGCGGAGGAGGGCAATGAAG+CGG 0.533925 1_3:-61610319 None:intergenic
TCAAGGACAGAAATAGGACT+TGG 0.539012 1_3:-61612055 None:intergenic
CTTGCAGAGAAGAAAATGGC+TGG 0.540090 1_3:+61610216 Msa0131050:intron
TTGCTGACAGCTGATGATGA+TGG 0.540546 1_3:-61612001 None:intergenic
CTGTCAGCAAGGAGGACTCT+GGG 0.542617 1_3:+61612014 Msa0131050:CDS
AAAATCTGAAGACAGCGCCT+TGG 0.556439 1_3:-61612260 None:intergenic
TTGGTGCGTGCACGTCCGCA+AGG 0.556777 1_3:-61612136 None:intergenic
TAGCAGCAGGCCGGTATTCG+GGG 0.557503 1_3:-61612534 None:intergenic
CATGTTCTCCTCAACAGAAG+AGG 0.558411 1_3:-61612218 None:intergenic
GTCCCCATCCCCGTGCCTTG+CGG 0.560563 1_3:+61612121 Msa0131050:CDS
TTTATAATATCCATATCCAT+GGG 0.561480 1_3:+61612937 Msa0131050:three_prime_UTR
TTGTAGTTTGCCGCGGAGGA+GGG 0.563526 1_3:-61610330 None:intergenic
TCAGCTGGAGCAGTAGGAAG+TGG 0.567950 1_3:-61612367 None:intergenic
CCACTGTCAGCTGGAGCAGT+AGG 0.567950 1_3:-61612373 None:intergenic
GGAGAGTCTCACAATGAAAG+TGG 0.570456 1_3:+61611970 Msa0131050:CDS
ATACGACGCGACTCTAGATA+AGG 0.574384 1_3:-61612731 None:intergenic
TCCTCAACAGAAGAGGAAGT+AGG 0.578279 1_3:-61612211 None:intergenic
AACCAAGACTCCACAATGGA+GGG 0.579995 1_3:+61612444 Msa0131050:CDS
AAGACTCCACAATGGAGGGC+AGG 0.580027 1_3:+61612448 Msa0131050:CDS
GTATTCCAAGGCGAGAACAT+TGG 0.583263 1_3:-61612662 None:intergenic
CAAAACGTTGGACTAGCAGC+AGG 0.583276 1_3:-61612547 None:intergenic
CTGGCCAAATGAGTCTGACT+CGG 0.584259 1_3:+61610368 Msa0131050:CDS
GCTGACAGTGGCGAACAGAA+TGG 0.590330 1_3:+61612385 Msa0131050:CDS
TTGCGGTGTACGCTACAAGT+CGG 0.591752 1_3:+61612501 Msa0131050:CDS
TGAGTTGTAGTTTGCCGCGG+AGG 0.592270 1_3:-61610334 None:intergenic
AAAACACTCTGCAATGCTTG+CGG 0.597816 1_3:+61612484 Msa0131050:CDS
ATCATCATCAGCTGTCAGCA+AGG 0.601103 1_3:+61612003 Msa0131050:CDS
CTTGGAATACAACATTTGAA+GGG 0.601413 1_3:+61612675 Msa0131050:exon
CGCTTCATTGCCCTCCTCCG+CGG 0.601691 1_3:+61610320 Msa0131050:CDS
GTGCACGTCCGCAAGGCACG+GGG 0.603513 1_3:-61612129 None:intergenic
TGCACAGCTGGACAAAACGT+TGG 0.609672 1_3:-61612559 None:intergenic
GGAGAGAGAAATCTCCAACT+AGG 0.610583 1_3:-61612705 None:intergenic
CAATGAGTTGTAGTTTGCCG+CGG 0.611265 1_3:-61610337 None:intergenic
GGTCCTTGAAATGAGATGCA+AGG 0.611789 1_3:+61612600 Msa0131050:CDS
CAATAGTACTTCAGACCTCT+CGG 0.613630 1_3:+61610401 Msa0131050:CDS
AGGAAAGGGAAGAAAAGGGT+AGG 0.615212 1_3:+61612846 Msa0131050:three_prime_UTR
ACGTTGGACTAGCAGCAGGC+CGG 0.619617 1_3:-61612543 None:intergenic
CTCAACAGAAGAGGAAGTAG+GGG 0.627104 1_3:-61612209 None:intergenic
TAACCAAGACTCCACAATGG+AGG 0.629519 1_3:+61612443 Msa0131050:CDS
CGGTGTCAACGTCGTCGACG+GGG 0.629631 1_3:-61610293 None:intergenic
AGTAGGGGAAATGAGTTGCA+TGG 0.640358 1_3:-61612194 None:intergenic
GCCTAATGTTATCTCCACCA+AGG 0.643801 1_3:+61612243 Msa0131050:CDS
TAATTTACTCAAATTCAACA+AGG 0.648312 1_3:+61609424 Msa0131050:five_prime_UTR
ATGAGTTGCATGGCAGAACG+AGG 0.661756 1_3:-61612184 None:intergenic
AACGAGGATTGAAGGCTGTG+GGG 0.665902 1_3:-61612168 None:intergenic
ACGCGACTCTAGATAAGGCG+AGG 0.670462 1_3:-61612726 None:intergenic
AATGGAGGGCAGGTCCAATG+GGG 0.678887 1_3:+61612458 Msa0131050:CDS
CAACGGGGAGCTCCGCCGAG+AGG 0.679446 1_3:-61610416 None:intergenic
CCTACTGCTCCAGCTGACAG+TGG 0.685510 1_3:+61612373 Msa0131050:CDS
ATCATCAGCTGTCAGCAAGG+AGG 0.691864 1_3:+61612006 Msa0131050:CDS
GGAGTGGGTGTCCAATATTG+TGG 0.693703 1_3:+61611931 Msa0131050:CDS
AGATAACCAAGACTCCACAA+TGG 0.734467 1_3:+61612440 Msa0131050:CDS
CTCTACTCACCGGATCAACG+GGG 0.746525 1_3:-61610431 None:intergenic
GATGGGGACGTAAATCCCTG+TGG 0.752387 1_3:-61612107 None:intergenic
TAGTACTTCAGACCTCTCGG+CGG 0.759629 1_3:+61610404 Msa0131050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATTAAGCAAAA+TGG - chr1_3:61609359-61609378 None:intergenic 10.0%
!!! TTTTTTTATTTTTATTATGC+AGG + chr1_3:61609369-61609388 Msa0131050:intron 10.0%
!!! ATTTTTTTTTAATCTAAAGA+AGG + chr1_3:61609999-61610018 Msa0131050:intron 10.0%
!!! AACTTTACTTTATTTATTTT+TGG - chr1_3:61611092-61611111 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG + chr1_3:61611221-61611240 Msa0131050:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG + chr1_3:61611222-61611241 Msa0131050:intron 10.0%
!! AAATAAAATAAAACAAACAT+GGG - chr1_3:61611462-61611481 None:intergenic 10.0%
!! AAAATAAAATAAAACAAACA+TGG - chr1_3:61611463-61611482 None:intergenic 10.0%
!! AATAAAAAAATTAAGCAAAA+TGG - chr1_3:61609359-61609378 None:intergenic 10.0%
!!! TTTTTTTATTTTTATTATGC+AGG + chr1_3:61609369-61609388 Msa0131050:intron 10.0%
!!! ATTTTTTTTTAATCTAAAGA+AGG + chr1_3:61609999-61610018 Msa0131050:intron 10.0%
!!! AACTTTACTTTATTTATTTT+TGG - chr1_3:61611092-61611111 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG + chr1_3:61611221-61611240 Msa0131050:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG + chr1_3:61611222-61611241 Msa0131050:intron 10.0%
!! AAATAAAATAAAACAAACAT+GGG - chr1_3:61611462-61611481 None:intergenic 10.0%
!! AAAATAAAATAAAACAAACA+TGG - chr1_3:61611463-61611482 None:intergenic 10.0%
!!! GTTATAAACAATTTTGATTT+TGG + chr1_3:61609316-61609335 Msa0131050:intron 15.0%
!!! CAATTTGATTCTAAAATAAA+TGG + chr1_3:61609564-61609583 Msa0131050:intron 15.0%
!! TTGTTTCAAAAGAAAAATAT+TGG + chr1_3:61609744-61609763 Msa0131050:intron 15.0%
!! TGTTTCAAAAGAAAAATATT+GGG + chr1_3:61609745-61609764 Msa0131050:intron 15.0%
!!! AAGTCATTTTAATATCTATT+TGG + chr1_3:61609871-61609890 Msa0131050:intron 15.0%
!! AGAAAAAACGAAATTAAATA+GGG - chr1_3:61610067-61610086 None:intergenic 15.0%
!! AAGAAAAAACGAAATTAAAT+AGG - chr1_3:61610068-61610087 None:intergenic 15.0%
!! GAAAAAAATTATTTCGTAAT+AGG + chr1_3:61610521-61610540 Msa0131050:intron 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG - chr1_3:61610786-61610805 None:intergenic 15.0%
!!! TAATAAAGTTTTTTTTATCG+AGG + chr1_3:61610804-61610823 Msa0131050:intron 15.0%
!! CTCTACAAAAAAAAAAAATA+TGG - chr1_3:61610857-61610876 None:intergenic 15.0%
!! TAAAAATTAACCTAAAAAAG+TGG - chr1_3:61610995-61611014 None:intergenic 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG + chr1_3:61611534-61611553 Msa0131050:intron 15.0%
!!! TTGTTGAATTTTATTTCTTT+TGG + chr1_3:61612770-61612789 Msa0131050:three_prime_UTR 15.0%
!!! GTTATAAACAATTTTGATTT+TGG + chr1_3:61609316-61609335 Msa0131050:intron 15.0%
!!! CAATTTGATTCTAAAATAAA+TGG + chr1_3:61609564-61609583 Msa0131050:intron 15.0%
!! TTGTTTCAAAAGAAAAATAT+TGG + chr1_3:61609744-61609763 Msa0131050:intron 15.0%
!! TGTTTCAAAAGAAAAATATT+GGG + chr1_3:61609745-61609764 Msa0131050:intron 15.0%
!!! AAGTCATTTTAATATCTATT+TGG + chr1_3:61609871-61609890 Msa0131050:intron 15.0%
!! AGAAAAAACGAAATTAAATA+GGG - chr1_3:61610067-61610086 None:intergenic 15.0%
!! AAGAAAAAACGAAATTAAAT+AGG - chr1_3:61610068-61610087 None:intergenic 15.0%
!! GAAAAAAATTATTTCGTAAT+AGG + chr1_3:61610521-61610540 Msa0131050:intron 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG - chr1_3:61610786-61610805 None:intergenic 15.0%
!!! TAATAAAGTTTTTTTTATCG+AGG + chr1_3:61610804-61610823 Msa0131050:intron 15.0%
!! CTCTACAAAAAAAAAAAATA+TGG - chr1_3:61610857-61610876 None:intergenic 15.0%
!! TAAAAATTAACCTAAAAAAG+TGG - chr1_3:61610995-61611014 None:intergenic 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG + chr1_3:61611534-61611553 Msa0131050:intron 15.0%
!!! TTGTTGAATTTTATTTCTTT+TGG + chr1_3:61612770-61612789 Msa0131050:three_prime_UTR 15.0%
!! TAATTTACTCAAATTCAACA+AGG + chr1_3:61609424-61609443 Msa0131050:five_prime_UTR 20.0%
!! ATTGAGATAAAATTGAAGAA+GGG - chr1_3:61609457-61609476 None:intergenic 20.0%
!! AATTGAGATAAAATTGAAGA+AGG - chr1_3:61609458-61609477 None:intergenic 20.0%
!!! TGCTTACATTTTATTTTAGA+CGG + chr1_3:61609671-61609690 Msa0131050:intron 20.0%
!! AGATATTAAAATGACTTGAT+TGG - chr1_3:61609868-61609887 None:intergenic 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG + chr1_3:61610904-61610923 Msa0131050:intron 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG - chr1_3:61611145-61611164 None:intergenic 20.0%
!! ATTATTTGGATCATCATTAT+TGG + chr1_3:61611339-61611358 Msa0131050:intron 20.0%
!! TGAAGGTTCATTATTTATTT+AGG - chr1_3:61611411-61611430 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG + chr1_3:61611414-61611433 Msa0131050:intron 20.0%
!! CATGATACTTATTAATACAA+AGG - chr1_3:61611703-61611722 None:intergenic 20.0%
!!! ATTTTATTTCTTTTGGTCAT+TGG + chr1_3:61612777-61612796 Msa0131050:three_prime_UTR 20.0%
!!! TTTTATAATATCCATATCCA+TGG + chr1_3:61612936-61612955 Msa0131050:three_prime_UTR 20.0%
!! TTTATAATATCCATATCCAT+GGG + chr1_3:61612937-61612956 Msa0131050:three_prime_UTR 20.0%
!! TAATTTACTCAAATTCAACA+AGG + chr1_3:61609424-61609443 Msa0131050:five_prime_UTR 20.0%
!! ATTGAGATAAAATTGAAGAA+GGG - chr1_3:61609457-61609476 None:intergenic 20.0%
!! AATTGAGATAAAATTGAAGA+AGG - chr1_3:61609458-61609477 None:intergenic 20.0%
!!! TGCTTACATTTTATTTTAGA+CGG + chr1_3:61609671-61609690 Msa0131050:intron 20.0%
!! AGATATTAAAATGACTTGAT+TGG - chr1_3:61609868-61609887 None:intergenic 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG + chr1_3:61610904-61610923 Msa0131050:intron 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG - chr1_3:61611145-61611164 None:intergenic 20.0%
!! ATTATTTGGATCATCATTAT+TGG + chr1_3:61611339-61611358 Msa0131050:intron 20.0%
!! TGAAGGTTCATTATTTATTT+AGG - chr1_3:61611411-61611430 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG + chr1_3:61611414-61611433 Msa0131050:intron 20.0%
!! CATGATACTTATTAATACAA+AGG - chr1_3:61611703-61611722 None:intergenic 20.0%
!!! ATTTTATTTCTTTTGGTCAT+TGG + chr1_3:61612777-61612796 Msa0131050:three_prime_UTR 20.0%
!!! TTTTATAATATCCATATCCA+TGG + chr1_3:61612936-61612955 Msa0131050:three_prime_UTR 20.0%
!! TTTATAATATCCATATCCAT+GGG + chr1_3:61612937-61612956 Msa0131050:three_prime_UTR 20.0%
! AAGAAGGTTTAAATGGTAAA+GGG - chr1_3:61609007-61609026 None:intergenic 25.0%
! TTGAGGTGAAATTGAAATTA+AGG - chr1_3:61609127-61609146 None:intergenic 25.0%
! AACTAAGCTTAGTTTATTTG+AGG - chr1_3:61609144-61609163 None:intergenic 25.0%
! AATAAACTAAGCTTAGTTTC+AGG + chr1_3:61609146-61609165 Msa0131050:five_prime_UTR 25.0%
!! GTTCTTTTCATTTTCTCATT+TGG + chr1_3:61609173-61609192 Msa0131050:intron 25.0%
!!! ATTCTCTAGTTTGTTTTCTT+AGG + chr1_3:61609203-61609222 Msa0131050:intron 25.0%
! AGTAAAATGAAAGAAAGCAA+GGG - chr1_3:61609295-61609314 None:intergenic 25.0%
!!! TTATCTCAATTTTCAAGTGT+TGG + chr1_3:61609467-61609486 Msa0131050:intron 25.0%
!!! TTTTCCTTTCTGAAGAAATA+CGG + chr1_3:61609507-61609526 Msa0131050:intron 25.0%
!! TCTAAAATAAATGGAGAAAC+TGG + chr1_3:61609573-61609592 Msa0131050:intron 25.0%
!!! TTACATTTTATTTTAGACGG+AGG + chr1_3:61609674-61609693 Msa0131050:intron 25.0%
! ATTTCCGTAAAAAATTACGT+GGG + chr1_3:61610099-61610118 Msa0131050:intron 25.0%
!!! GAATTGCTTTGTTTTTATAG+AGG - chr1_3:61610151-61610170 None:intergenic 25.0%
! ATCACGATAAGTCAATAAAA+GGG - chr1_3:61610697-61610716 None:intergenic 25.0%
! AATCACGATAAGTCAATAAA+AGG - chr1_3:61610698-61610717 None:intergenic 25.0%
!!! AATCATTTTTCGACATGAAT+TGG - chr1_3:61610898-61610917 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG + chr1_3:61611152-61611171 Msa0131050:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG - chr1_3:61611407-61611426 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG - chr1_3:61611408-61611427 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG - chr1_3:61611601-61611620 None:intergenic 25.0%
! TCTTCATCTATTATTCTTAG+AGG - chr1_3:61611825-61611844 None:intergenic 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG - chr1_3:61612344-61612363 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG + chr1_3:61612342-61612361 Msa0131050:CDS 25.0%
! AATAGGATTAATAGAACAGA+AGG + chr1_3:61612826-61612845 Msa0131050:three_prime_UTR 25.0%
! ATTAATAGAACAGAAGGAAA+GGG + chr1_3:61612832-61612851 Msa0131050:three_prime_UTR 25.0%
!!! CTAGTTATTTTAGATCACTT+AGG + chr1_3:61612878-61612897 Msa0131050:three_prime_UTR 25.0%
!!! TTATTTTAGATCACTTAGGT+CGG + chr1_3:61612882-61612901 Msa0131050:three_prime_UTR 25.0%
! AAGAAGGTTTAAATGGTAAA+GGG - chr1_3:61609007-61609026 None:intergenic 25.0%
! TTGAGGTGAAATTGAAATTA+AGG - chr1_3:61609127-61609146 None:intergenic 25.0%
! AACTAAGCTTAGTTTATTTG+AGG - chr1_3:61609144-61609163 None:intergenic 25.0%
! AATAAACTAAGCTTAGTTTC+AGG + chr1_3:61609146-61609165 Msa0131050:five_prime_UTR 25.0%
!! GTTCTTTTCATTTTCTCATT+TGG + chr1_3:61609173-61609192 Msa0131050:intron 25.0%
!!! ATTCTCTAGTTTGTTTTCTT+AGG + chr1_3:61609203-61609222 Msa0131050:intron 25.0%
! AGTAAAATGAAAGAAAGCAA+GGG - chr1_3:61609295-61609314 None:intergenic 25.0%
!!! TTATCTCAATTTTCAAGTGT+TGG + chr1_3:61609467-61609486 Msa0131050:intron 25.0%
!!! TTTTCCTTTCTGAAGAAATA+CGG + chr1_3:61609507-61609526 Msa0131050:intron 25.0%
!! TCTAAAATAAATGGAGAAAC+TGG + chr1_3:61609573-61609592 Msa0131050:intron 25.0%
!!! TTACATTTTATTTTAGACGG+AGG + chr1_3:61609674-61609693 Msa0131050:intron 25.0%
! ATTTCCGTAAAAAATTACGT+GGG + chr1_3:61610099-61610118 Msa0131050:intron 25.0%
!!! GAATTGCTTTGTTTTTATAG+AGG - chr1_3:61610151-61610170 None:intergenic 25.0%
! ATCACGATAAGTCAATAAAA+GGG - chr1_3:61610697-61610716 None:intergenic 25.0%
! AATCACGATAAGTCAATAAA+AGG - chr1_3:61610698-61610717 None:intergenic 25.0%
!!! AATCATTTTTCGACATGAAT+TGG - chr1_3:61610898-61610917 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG + chr1_3:61611152-61611171 Msa0131050:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG - chr1_3:61611407-61611426 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG - chr1_3:61611408-61611427 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG - chr1_3:61611601-61611620 None:intergenic 25.0%
! TCTTCATCTATTATTCTTAG+AGG - chr1_3:61611825-61611844 None:intergenic 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG - chr1_3:61612344-61612363 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG + chr1_3:61612342-61612361 Msa0131050:CDS 25.0%
! AATAGGATTAATAGAACAGA+AGG + chr1_3:61612826-61612845 Msa0131050:three_prime_UTR 25.0%
! ATTAATAGAACAGAAGGAAA+GGG + chr1_3:61612832-61612851 Msa0131050:three_prime_UTR 25.0%
!!! CTAGTTATTTTAGATCACTT+AGG + chr1_3:61612878-61612897 Msa0131050:three_prime_UTR 25.0%
!!! TTATTTTAGATCACTTAGGT+CGG + chr1_3:61612882-61612901 Msa0131050:three_prime_UTR 25.0%
AGAAGGTTTAAATGGTAAAG+GGG - chr1_3:61609006-61609025 None:intergenic 30.0%
GAAGAAGGTTTAAATGGTAA+AGG - chr1_3:61609008-61609027 None:intergenic 30.0%
AGTTATTTGAAAGAGGAAAG+AGG - chr1_3:61609036-61609055 None:intergenic 30.0%
GAGTAAAATGAAAGAAAGCA+AGG - chr1_3:61609296-61609315 None:intergenic 30.0%
CTTCAGAAAGGAAAATTGAA+TGG - chr1_3:61609502-61609521 None:intergenic 30.0%
!! TAAGTTAAGTTGATGTAGCT+GGG - chr1_3:61609628-61609647 None:intergenic 30.0%
!! ATAAGTTAAGTTGATGTAGC+TGG - chr1_3:61609629-61609648 None:intergenic 30.0%
CATTTCCGTAAAAAATTACG+TGG + chr1_3:61610098-61610117 Msa0131050:intron 30.0%
TTTCCGTAAAAAATTACGTG+GGG + chr1_3:61610100-61610119 Msa0131050:intron 30.0%
!!! TTGCATATTGCCACTTTTTT+AGG + chr1_3:61610982-61611001 Msa0131050:intron 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG - chr1_3:61611079-61611098 None:intergenic 30.0%
ATGACTTCCAATTCAAGTAA+AGG - chr1_3:61611162-61611181 None:intergenic 30.0%
TATTTATAGAAAGGGCAGTT+TGG + chr1_3:61611230-61611249 Msa0131050:intron 30.0%
ATAATGAACCTTCAAATTGG+TGG + chr1_3:61611417-61611436 Msa0131050:intron 30.0%
AAGAATAAGAACTTGTGCTT+TGG - chr1_3:61611503-61611522 None:intergenic 30.0%
AAACAAAACATATGTGTGCA+TGG - chr1_3:61611676-61611695 None:intergenic 30.0%
TGATCAATAAATCGCATCAT+TGG - chr1_3:61611740-61611759 None:intergenic 30.0%
!!! ATTCTTAGAGGCTAGTTTTA+TGG - chr1_3:61611813-61611832 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG - chr1_3:61611945-61611964 None:intergenic 30.0%
TTGGTTTCTTGACAATAATC+CGG - chr1_3:61612303-61612322 None:intergenic 30.0%
CTTGGAATACAACATTTGAA+GGG + chr1_3:61612675-61612694 Msa0131050:exon 30.0%
GATTAATAGAACAGAAGGAA+AGG + chr1_3:61612831-61612850 Msa0131050:three_prime_UTR 30.0%
AAAAAGAATTCCCATGGATA+TGG - chr1_3:61612950-61612969 None:intergenic 30.0%
TTGTTTCATTTCAATCACTC+TGG + chr1_3:61613033-61613052 Msa0131050:three_prime_UTR 30.0%
AGAAGGTTTAAATGGTAAAG+GGG - chr1_3:61609006-61609025 None:intergenic 30.0%
GAAGAAGGTTTAAATGGTAA+AGG - chr1_3:61609008-61609027 None:intergenic 30.0%
AGTTATTTGAAAGAGGAAAG+AGG - chr1_3:61609036-61609055 None:intergenic 30.0%
GAGTAAAATGAAAGAAAGCA+AGG - chr1_3:61609296-61609315 None:intergenic 30.0%
CTTCAGAAAGGAAAATTGAA+TGG - chr1_3:61609502-61609521 None:intergenic 30.0%
!! TAAGTTAAGTTGATGTAGCT+GGG - chr1_3:61609628-61609647 None:intergenic 30.0%
!! ATAAGTTAAGTTGATGTAGC+TGG - chr1_3:61609629-61609648 None:intergenic 30.0%
CATTTCCGTAAAAAATTACG+TGG + chr1_3:61610098-61610117 Msa0131050:intron 30.0%
TTTCCGTAAAAAATTACGTG+GGG + chr1_3:61610100-61610119 Msa0131050:intron 30.0%
!!! TTGCATATTGCCACTTTTTT+AGG + chr1_3:61610982-61611001 Msa0131050:intron 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG - chr1_3:61611079-61611098 None:intergenic 30.0%
ATGACTTCCAATTCAAGTAA+AGG - chr1_3:61611162-61611181 None:intergenic 30.0%
TATTTATAGAAAGGGCAGTT+TGG + chr1_3:61611230-61611249 Msa0131050:intron 30.0%
ATAATGAACCTTCAAATTGG+TGG + chr1_3:61611417-61611436 Msa0131050:intron 30.0%
AAGAATAAGAACTTGTGCTT+TGG - chr1_3:61611503-61611522 None:intergenic 30.0%
AAACAAAACATATGTGTGCA+TGG - chr1_3:61611676-61611695 None:intergenic 30.0%
TGATCAATAAATCGCATCAT+TGG - chr1_3:61611740-61611759 None:intergenic 30.0%
!!! ATTCTTAGAGGCTAGTTTTA+TGG - chr1_3:61611813-61611832 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG - chr1_3:61611945-61611964 None:intergenic 30.0%
TTGGTTTCTTGACAATAATC+CGG - chr1_3:61612303-61612322 None:intergenic 30.0%
CTTGGAATACAACATTTGAA+GGG + chr1_3:61612675-61612694 Msa0131050:exon 30.0%
GATTAATAGAACAGAAGGAA+AGG + chr1_3:61612831-61612850 Msa0131050:three_prime_UTR 30.0%
AAAAAGAATTCCCATGGATA+TGG - chr1_3:61612950-61612969 None:intergenic 30.0%
TTGTTTCATTTCAATCACTC+TGG + chr1_3:61613033-61613052 Msa0131050:three_prime_UTR 30.0%
AAGGTTTAAATGGTAAAGGG+GGG - chr1_3:61609004-61609023 None:intergenic 35.0%
GAAGGTTTAAATGGTAAAGG+GGG - chr1_3:61609005-61609024 None:intergenic 35.0%
GAGAGTGAAGAAGGTTTAAA+TGG - chr1_3:61609014-61609033 None:intergenic 35.0%
TGGAGTGAGTTATTTGAAAG+AGG - chr1_3:61609043-61609062 None:intergenic 35.0%
TGAGAAGAGAATGGTAGAAA+AGG - chr1_3:61609095-61609114 None:intergenic 35.0%
AAAGAGTAGTGAGAAGAGAA+TGG - chr1_3:61609104-61609123 None:intergenic 35.0%
!! ACTAAGCTTAGTTTCAGGTT+TGG + chr1_3:61609151-61609170 Msa0131050:intron 35.0%
TTCATTAGTGAGTGTAGTGT+CGG + chr1_3:61609236-61609255 Msa0131050:intron 35.0%
AAGAAAAATATTGGGACCAG+CGG + chr1_3:61609753-61609772 Msa0131050:intron 35.0%
!!! TTGCCCCACGTAATTTTTTA+CGG - chr1_3:61610106-61610125 None:intergenic 35.0%
!! TTGACTTGCAGAGAAGAAAA+TGG + chr1_3:61610212-61610231 Msa0131050:intron 35.0%
TTAAGTAACTCTCTACTCAC+CGG - chr1_3:61610444-61610463 None:intergenic 35.0%
GTCATAATCAAGCAATCAGA+CGG - chr1_3:61610558-61610577 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG + chr1_3:61610577-61610596 Msa0131050:intron 35.0%
AAAGCTACAAACAGACAATC+AGG - chr1_3:61610604-61610623 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG - chr1_3:61610726-61610745 None:intergenic 35.0%
AAACCATTCATGATGTTGCT+AGG - chr1_3:61610727-61610746 None:intergenic 35.0%
AGTGGCAATATGCAATTGAT+TGG - chr1_3:61610977-61610996 None:intergenic 35.0%
TTCAGGAAACTTGATTGTGT+CGG + chr1_3:61611259-61611278 Msa0131050:intron 35.0%
TAGATTGACCACCAATTTGA+AGG - chr1_3:61611428-61611447 None:intergenic 35.0%
! AAACAAACATGGGTTGTTAC+TGG - chr1_3:61611452-61611471 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG + chr1_3:61611910-61611929 Msa0131050:intron 35.0%
AAGATCTTCTTTCATTGGAG+TGG + chr1_3:61611915-61611934 Msa0131050:CDS 35.0%
AGATCTTCTTTCATTGGAGT+GGG + chr1_3:61611916-61611935 Msa0131050:CDS 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG + chr1_3:61612281-61612300 Msa0131050:CDS 35.0%
TGGTTTCTTGACAATAATCC+GGG - chr1_3:61612302-61612321 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG - chr1_3:61612606-61612625 None:intergenic 35.0%
CCTTCAAATGTTGTATTCCA+AGG - chr1_3:61612677-61612696 None:intergenic 35.0%
CCTTGGAATACAACATTTGA+AGG + chr1_3:61612674-61612693 Msa0131050:CDS 35.0%
!!! TTGGTCATTGGTTTTTGTAC+AGG + chr1_3:61612789-61612808 Msa0131050:three_prime_UTR 35.0%
!!! TGGTCATTGGTTTTTGTACA+GGG + chr1_3:61612790-61612809 Msa0131050:three_prime_UTR 35.0%
AACTGCAAAAAGAATTCCCA+TGG - chr1_3:61612956-61612975 None:intergenic 35.0%
AAGGTTTAAATGGTAAAGGG+GGG - chr1_3:61609004-61609023 None:intergenic 35.0%
GAAGGTTTAAATGGTAAAGG+GGG - chr1_3:61609005-61609024 None:intergenic 35.0%
GAGAGTGAAGAAGGTTTAAA+TGG - chr1_3:61609014-61609033 None:intergenic 35.0%
TGGAGTGAGTTATTTGAAAG+AGG - chr1_3:61609043-61609062 None:intergenic 35.0%
TGAGAAGAGAATGGTAGAAA+AGG - chr1_3:61609095-61609114 None:intergenic 35.0%
AAAGAGTAGTGAGAAGAGAA+TGG - chr1_3:61609104-61609123 None:intergenic 35.0%
!! ACTAAGCTTAGTTTCAGGTT+TGG + chr1_3:61609151-61609170 Msa0131050:intron 35.0%
TTCATTAGTGAGTGTAGTGT+CGG + chr1_3:61609236-61609255 Msa0131050:intron 35.0%
AAGAAAAATATTGGGACCAG+CGG + chr1_3:61609753-61609772 Msa0131050:intron 35.0%
!!! TTGCCCCACGTAATTTTTTA+CGG - chr1_3:61610106-61610125 None:intergenic 35.0%
!! TTGACTTGCAGAGAAGAAAA+TGG + chr1_3:61610212-61610231 Msa0131050:intron 35.0%
TTAAGTAACTCTCTACTCAC+CGG - chr1_3:61610444-61610463 None:intergenic 35.0%
GTCATAATCAAGCAATCAGA+CGG - chr1_3:61610558-61610577 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG + chr1_3:61610577-61610596 Msa0131050:intron 35.0%
AAAGCTACAAACAGACAATC+AGG - chr1_3:61610604-61610623 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG - chr1_3:61610726-61610745 None:intergenic 35.0%
AAACCATTCATGATGTTGCT+AGG - chr1_3:61610727-61610746 None:intergenic 35.0%
AGTGGCAATATGCAATTGAT+TGG - chr1_3:61610977-61610996 None:intergenic 35.0%
TTCAGGAAACTTGATTGTGT+CGG + chr1_3:61611259-61611278 Msa0131050:intron 35.0%
TAGATTGACCACCAATTTGA+AGG - chr1_3:61611428-61611447 None:intergenic 35.0%
! AAACAAACATGGGTTGTTAC+TGG - chr1_3:61611452-61611471 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG + chr1_3:61611910-61611929 Msa0131050:intron 35.0%
AAGATCTTCTTTCATTGGAG+TGG + chr1_3:61611915-61611934 Msa0131050:CDS 35.0%
AGATCTTCTTTCATTGGAGT+GGG + chr1_3:61611916-61611935 Msa0131050:CDS 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG + chr1_3:61612281-61612300 Msa0131050:CDS 35.0%
TGGTTTCTTGACAATAATCC+GGG - chr1_3:61612302-61612321 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG - chr1_3:61612606-61612625 None:intergenic 35.0%
CCTTCAAATGTTGTATTCCA+AGG - chr1_3:61612677-61612696 None:intergenic 35.0%
CCTTGGAATACAACATTTGA+AGG + chr1_3:61612674-61612693 Msa0131050:CDS 35.0%
!!! TTGGTCATTGGTTTTTGTAC+AGG + chr1_3:61612789-61612808 Msa0131050:three_prime_UTR 35.0%
!!! TGGTCATTGGTTTTTGTACA+GGG + chr1_3:61612790-61612809 Msa0131050:three_prime_UTR 35.0%
AACTGCAAAAAGAATTCCCA+TGG - chr1_3:61612956-61612975 None:intergenic 35.0%
!! TTAAGTTGATGTAGCTGGGA+CGG - chr1_3:61609624-61609643 None:intergenic 40.0%
AGCGGTGGCTAAAATACAAT+GGG + chr1_3:61609771-61609790 Msa0131050:intron 40.0%
GCAACGTAATTCATCCAATG+AGG - chr1_3:61609902-61609921 None:intergenic 40.0%
CAATAGTACTTCAGACCTCT+CGG + chr1_3:61610401-61610420 Msa0131050:CDS 40.0%
TTCCCTAGCAACATCATGAA+TGG + chr1_3:61610721-61610740 Msa0131050:intron 40.0%
! TGTGGACGATTCATTTTGTG+AGG + chr1_3:61611949-61611968 Msa0131050:CDS 40.0%
TCAAGGACAGAAATAGGACT+TGG - chr1_3:61612058-61612077 None:intergenic 40.0%
CTGCTTTCAAGGACAGAAAT+AGG - chr1_3:61612064-61612083 None:intergenic 40.0%
AAGAAACCAAAGCTCTCTTC+TGG + chr1_3:61612313-61612332 Msa0131050:CDS 40.0%
AGAATGGTTCACTACCTGTT+AGG + chr1_3:61612401-61612420 Msa0131050:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG - chr1_3:61612418-61612437 None:intergenic 40.0%
AGATAACCAAGACTCCACAA+TGG + chr1_3:61612440-61612459 Msa0131050:CDS 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG - chr1_3:61612484-61612503 None:intergenic 40.0%
AAAACACTCTGCAATGCTTG+CGG + chr1_3:61612484-61612503 Msa0131050:CDS 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG - chr1_3:61612587-61612606 None:intergenic 40.0%
! TTTTTGTACAGGGCTGGAAT+GGG + chr1_3:61612800-61612819 Msa0131050:three_prime_UTR 40.0%
ACAGAAGGAAAGGGAAGAAA+AGG + chr1_3:61612841-61612860 Msa0131050:three_prime_UTR 40.0%
CAGAAGGAAAGGGAAGAAAA+GGG + chr1_3:61612842-61612861 Msa0131050:three_prime_UTR 40.0%
GAAGAAAAGGGTAGGATCTT+AGG + chr1_3:61612854-61612873 Msa0131050:three_prime_UTR 40.0%
TTTAGATCACTTAGGTCGGT+AGG + chr1_3:61612886-61612905 Msa0131050:three_prime_UTR 40.0%
!! TTAAGTTGATGTAGCTGGGA+CGG - chr1_3:61609624-61609643 None:intergenic 40.0%
AGCGGTGGCTAAAATACAAT+GGG + chr1_3:61609771-61609790 Msa0131050:intron 40.0%
GCAACGTAATTCATCCAATG+AGG - chr1_3:61609902-61609921 None:intergenic 40.0%
CAATAGTACTTCAGACCTCT+CGG + chr1_3:61610401-61610420 Msa0131050:CDS 40.0%
TTCCCTAGCAACATCATGAA+TGG + chr1_3:61610721-61610740 Msa0131050:intron 40.0%
! TGTGGACGATTCATTTTGTG+AGG + chr1_3:61611949-61611968 Msa0131050:CDS 40.0%
TCAAGGACAGAAATAGGACT+TGG - chr1_3:61612058-61612077 None:intergenic 40.0%
CTGCTTTCAAGGACAGAAAT+AGG - chr1_3:61612064-61612083 None:intergenic 40.0%
AAGAAACCAAAGCTCTCTTC+TGG + chr1_3:61612313-61612332 Msa0131050:CDS 40.0%
AGAATGGTTCACTACCTGTT+AGG + chr1_3:61612401-61612420 Msa0131050:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG - chr1_3:61612418-61612437 None:intergenic 40.0%
AGATAACCAAGACTCCACAA+TGG + chr1_3:61612440-61612459 Msa0131050:CDS 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG - chr1_3:61612484-61612503 None:intergenic 40.0%
AAAACACTCTGCAATGCTTG+CGG + chr1_3:61612484-61612503 Msa0131050:CDS 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG - chr1_3:61612587-61612606 None:intergenic 40.0%
! TTTTTGTACAGGGCTGGAAT+GGG + chr1_3:61612800-61612819 Msa0131050:three_prime_UTR 40.0%
ACAGAAGGAAAGGGAAGAAA+AGG + chr1_3:61612841-61612860 Msa0131050:three_prime_UTR 40.0%
CAGAAGGAAAGGGAAGAAAA+GGG + chr1_3:61612842-61612861 Msa0131050:three_prime_UTR 40.0%
GAAGAAAAGGGTAGGATCTT+AGG + chr1_3:61612854-61612873 Msa0131050:three_prime_UTR 40.0%
TTTAGATCACTTAGGTCGGT+AGG + chr1_3:61612886-61612905 Msa0131050:three_prime_UTR 40.0%
TAAAGGGGGGTTATGAAGGA+AGG - chr1_3:61608991-61609010 None:intergenic 45.0%
ATGGTAAAGGGGGGTTATGA+AGG - chr1_3:61608995-61609014 None:intergenic 45.0%
AGGAAAGAGGAGAGTGAAGA+AGG - chr1_3:61609023-61609042 None:intergenic 45.0%
! AAAGGTGTGAGAGAGAGAGA+GGG - chr1_3:61609077-61609096 None:intergenic 45.0%
! AAAAGGTGTGAGAGAGAGAG+AGG - chr1_3:61609078-61609097 None:intergenic 45.0%
GCGACCGTATTTCTTCAGAA+AGG - chr1_3:61609514-61609533 None:intergenic 45.0%
AAAAATATTGGGACCAGCGG+TGG + chr1_3:61609756-61609775 Msa0131050:intron 45.0%
!!! CATTGTATTTTAGCCACCGC+TGG - chr1_3:61609772-61609791 None:intergenic 45.0%
CAGCGGTGGCTAAAATACAA+TGG + chr1_3:61609770-61609789 Msa0131050:intron 45.0%
TCTATTTGGCGTGACCTCAT+TGG + chr1_3:61609885-61609904 Msa0131050:intron 45.0%
CTTGCAGAGAAGAAAATGGC+TGG + chr1_3:61610216-61610235 Msa0131050:intron 45.0%
! CAATGAGTTGTAGTTTGCCG+CGG - chr1_3:61610340-61610359 None:intergenic 45.0%
ACAACTCATTGGCGAGTATC+TGG + chr1_3:61610349-61610368 Msa0131050:CDS 45.0%
AACACCGAGTCAGACTCATT+TGG - chr1_3:61610375-61610394 None:intergenic 45.0%
! GAGGTCTGAAGTACTATTGC+CGG - chr1_3:61610400-61610419 None:intergenic 45.0%
ACTATTTCCAGCCTGTCACA+CGG + chr1_3:61610624-61610643 Msa0131050:intron 45.0%
AACCACATAATCCGTGTGAC+AGG - chr1_3:61610638-61610657 None:intergenic 45.0%
!!! GGGCAGTTTGGTCATTTTTC+AGG + chr1_3:61611242-61611261 Msa0131050:intron 45.0%
! TTGATTGTGTCGGTGACATG+TGG + chr1_3:61611269-61611288 Msa0131050:intron 45.0%
CACCCTACTCTCCAATTTGA+GGG + chr1_3:61611303-61611322 Msa0131050:intron 45.0%
ACCCTACTCTCCAATTTGAG+GGG + chr1_3:61611304-61611323 Msa0131050:intron 45.0%
ACCCCTCAAATTGGAGAGTA+GGG - chr1_3:61611308-61611327 None:intergenic 45.0%
GGTGCGCTGTCTCAATTATT+TGG + chr1_3:61611325-61611344 Msa0131050:intron 45.0%
GGAGAGTCTCACAATGAAAG+TGG + chr1_3:61611970-61611989 Msa0131050:CDS 45.0%
! TTGCTGACAGCTGATGATGA+TGG - chr1_3:61612004-61612023 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG + chr1_3:61612003-61612022 Msa0131050:CDS 45.0%
AGTAGGGGAAATGAGTTGCA+TGG - chr1_3:61612197-61612216 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG - chr1_3:61612212-61612231 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG - chr1_3:61612213-61612232 None:intergenic 45.0%
TCCTCAACAGAAGAGGAAGT+AGG - chr1_3:61612214-61612233 None:intergenic 45.0%
CATGTTCTCCTCAACAGAAG+AGG - chr1_3:61612221-61612240 None:intergenic 45.0%
GCCTAATGTTATCTCCACCA+AGG + chr1_3:61612243-61612262 Msa0131050:CDS 45.0%
GCCTTGGTGGAGATAACATT+AGG - chr1_3:61612247-61612266 None:intergenic 45.0%
AAAATCTGAAGACAGCGCCT+TGG - chr1_3:61612263-61612282 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG + chr1_3:61612443-61612462 Msa0131050:CDS 45.0%
AACCAAGACTCCACAATGGA+GGG + chr1_3:61612444-61612463 Msa0131050:CDS 45.0%
GCACTCCAATTCGCACAAAA+AGG + chr1_3:61612579-61612598 Msa0131050:CDS 45.0%
GGTCCTTGAAATGAGATGCA+AGG + chr1_3:61612600-61612619 Msa0131050:CDS 45.0%
AAGGCGAGAACATTGGAGTT+TGG - chr1_3:61612658-61612677 None:intergenic 45.0%
AAACTCCAATGTTCTCGCCT+TGG + chr1_3:61612657-61612676 Msa0131050:CDS 45.0%
GTATTCCAAGGCGAGAACAT+TGG - chr1_3:61612665-61612684 None:intergenic 45.0%
GGAGAGAGAAATCTCCAACT+AGG - chr1_3:61612708-61612727 None:intergenic 45.0%
ATACGACGCGACTCTAGATA+AGG - chr1_3:61612734-61612753 None:intergenic 45.0%
!!! CATTGGTTTTTGTACAGGGC+TGG + chr1_3:61612794-61612813 Msa0131050:three_prime_UTR 45.0%
! GTTTTTGTACAGGGCTGGAA+TGG + chr1_3:61612799-61612818 Msa0131050:three_prime_UTR 45.0%
! TTTTGTACAGGGCTGGAATG+GGG + chr1_3:61612801-61612820 Msa0131050:three_prime_UTR 45.0%
AGGAAAGGGAAGAAAAGGGT+AGG + chr1_3:61612846-61612865 Msa0131050:three_prime_UTR 45.0%
!!! GGAGTCAGCGTCTTTTTTCT+TGG + chr1_3:61612907-61612926 Msa0131050:three_prime_UTR 45.0%
TAAAGGGGGGTTATGAAGGA+AGG - chr1_3:61608991-61609010 None:intergenic 45.0%
ATGGTAAAGGGGGGTTATGA+AGG - chr1_3:61608995-61609014 None:intergenic 45.0%
AGGAAAGAGGAGAGTGAAGA+AGG - chr1_3:61609023-61609042 None:intergenic 45.0%
! AAAGGTGTGAGAGAGAGAGA+GGG - chr1_3:61609077-61609096 None:intergenic 45.0%
! AAAAGGTGTGAGAGAGAGAG+AGG - chr1_3:61609078-61609097 None:intergenic 45.0%
GCGACCGTATTTCTTCAGAA+AGG - chr1_3:61609514-61609533 None:intergenic 45.0%
AAAAATATTGGGACCAGCGG+TGG + chr1_3:61609756-61609775 Msa0131050:intron 45.0%
!!! CATTGTATTTTAGCCACCGC+TGG - chr1_3:61609772-61609791 None:intergenic 45.0%
CAGCGGTGGCTAAAATACAA+TGG + chr1_3:61609770-61609789 Msa0131050:intron 45.0%
TCTATTTGGCGTGACCTCAT+TGG + chr1_3:61609885-61609904 Msa0131050:intron 45.0%
CTTGCAGAGAAGAAAATGGC+TGG + chr1_3:61610216-61610235 Msa0131050:intron 45.0%
! CAATGAGTTGTAGTTTGCCG+CGG - chr1_3:61610340-61610359 None:intergenic 45.0%
ACAACTCATTGGCGAGTATC+TGG + chr1_3:61610349-61610368 Msa0131050:CDS 45.0%
AACACCGAGTCAGACTCATT+TGG - chr1_3:61610375-61610394 None:intergenic 45.0%
! GAGGTCTGAAGTACTATTGC+CGG - chr1_3:61610400-61610419 None:intergenic 45.0%
ACTATTTCCAGCCTGTCACA+CGG + chr1_3:61610624-61610643 Msa0131050:intron 45.0%
AACCACATAATCCGTGTGAC+AGG - chr1_3:61610638-61610657 None:intergenic 45.0%
!!! GGGCAGTTTGGTCATTTTTC+AGG + chr1_3:61611242-61611261 Msa0131050:intron 45.0%
! TTGATTGTGTCGGTGACATG+TGG + chr1_3:61611269-61611288 Msa0131050:intron 45.0%
CACCCTACTCTCCAATTTGA+GGG + chr1_3:61611303-61611322 Msa0131050:intron 45.0%
ACCCTACTCTCCAATTTGAG+GGG + chr1_3:61611304-61611323 Msa0131050:intron 45.0%
ACCCCTCAAATTGGAGAGTA+GGG - chr1_3:61611308-61611327 None:intergenic 45.0%
GGTGCGCTGTCTCAATTATT+TGG + chr1_3:61611325-61611344 Msa0131050:intron 45.0%
GGAGAGTCTCACAATGAAAG+TGG + chr1_3:61611970-61611989 Msa0131050:CDS 45.0%
! TTGCTGACAGCTGATGATGA+TGG - chr1_3:61612004-61612023 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG + chr1_3:61612003-61612022 Msa0131050:CDS 45.0%
AGTAGGGGAAATGAGTTGCA+TGG - chr1_3:61612197-61612216 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG - chr1_3:61612212-61612231 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG - chr1_3:61612213-61612232 None:intergenic 45.0%
TCCTCAACAGAAGAGGAAGT+AGG - chr1_3:61612214-61612233 None:intergenic 45.0%
CATGTTCTCCTCAACAGAAG+AGG - chr1_3:61612221-61612240 None:intergenic 45.0%
GCCTAATGTTATCTCCACCA+AGG + chr1_3:61612243-61612262 Msa0131050:CDS 45.0%
GCCTTGGTGGAGATAACATT+AGG - chr1_3:61612247-61612266 None:intergenic 45.0%
AAAATCTGAAGACAGCGCCT+TGG - chr1_3:61612263-61612282 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG + chr1_3:61612443-61612462 Msa0131050:CDS 45.0%
AACCAAGACTCCACAATGGA+GGG + chr1_3:61612444-61612463 Msa0131050:CDS 45.0%
GCACTCCAATTCGCACAAAA+AGG + chr1_3:61612579-61612598 Msa0131050:CDS 45.0%
GGTCCTTGAAATGAGATGCA+AGG + chr1_3:61612600-61612619 Msa0131050:CDS 45.0%
AAGGCGAGAACATTGGAGTT+TGG - chr1_3:61612658-61612677 None:intergenic 45.0%
AAACTCCAATGTTCTCGCCT+TGG + chr1_3:61612657-61612676 Msa0131050:CDS 45.0%
GTATTCCAAGGCGAGAACAT+TGG - chr1_3:61612665-61612684 None:intergenic 45.0%
GGAGAGAGAAATCTCCAACT+AGG - chr1_3:61612708-61612727 None:intergenic 45.0%
ATACGACGCGACTCTAGATA+AGG - chr1_3:61612734-61612753 None:intergenic 45.0%
!!! CATTGGTTTTTGTACAGGGC+TGG + chr1_3:61612794-61612813 Msa0131050:three_prime_UTR 45.0%
! GTTTTTGTACAGGGCTGGAA+TGG + chr1_3:61612799-61612818 Msa0131050:three_prime_UTR 45.0%
! TTTTGTACAGGGCTGGAATG+GGG + chr1_3:61612801-61612820 Msa0131050:three_prime_UTR 45.0%
AGGAAAGGGAAGAAAAGGGT+AGG + chr1_3:61612846-61612865 Msa0131050:three_prime_UTR 45.0%
!!! GGAGTCAGCGTCTTTTTTCT+TGG + chr1_3:61612907-61612926 Msa0131050:three_prime_UTR 45.0%
!! ATAATATGAAATAAATAAAT+TGG + chr1_3:61609714-61609733 Msa0131050:intron 5.0%
!! TAATATGAAATAAATAAATT+GGG + chr1_3:61609715-61609734 Msa0131050:intron 5.0%
!!! TTATTTTTATTTTCTAAAAT+TGG + chr1_3:61611118-61611137 Msa0131050:intron 5.0%
!! ATAATATGAAATAAATAAAT+TGG + chr1_3:61609714-61609733 Msa0131050:intron 5.0%
!! TAATATGAAATAAATAAATT+GGG + chr1_3:61609715-61609734 Msa0131050:intron 5.0%
!!! TTATTTTTATTTTCTAAAAT+TGG + chr1_3:61611118-61611137 Msa0131050:intron 5.0%
GAGAGAGGGGAATAGTGTGT+TGG - chr1_3:61609063-61609082 None:intergenic 50.0%
AAGGTGTGAGAGAGAGAGAG+GGG - chr1_3:61609076-61609095 None:intergenic 50.0%
CGCGGCAAACTACAACTCAT+TGG + chr1_3:61610338-61610357 Msa0131050:CDS 50.0%
CTGGCCAAATGAGTCTGACT+CGG + chr1_3:61610368-61610387 Msa0131050:CDS 50.0%
!!! GAGTCTGACTCGGTGTTTTC+CGG + chr1_3:61610378-61610397 Msa0131050:CDS 50.0%
TAGTACTTCAGACCTCTCGG+CGG + chr1_3:61610404-61610423 Msa0131050:CDS 50.0%
TCTCTACTCACCGGATCAAC+GGG - chr1_3:61610435-61610454 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG - chr1_3:61610436-61610455 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG - chr1_3:61610593-61610612 None:intergenic 50.0%
ACATAATCCGTGTGACAGGC+TGG - chr1_3:61610634-61610653 None:intergenic 50.0%
! AGCCTGTCACACGGATTATG+TGG + chr1_3:61610633-61610652 Msa0131050:intron 50.0%
CCTCAAATTGGAGAGTAGGG+TGG - chr1_3:61611305-61611324 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG + chr1_3:61611302-61611321 Msa0131050:intron 50.0%
CACCCCTCAAATTGGAGAGT+AGG - chr1_3:61611309-61611328 None:intergenic 50.0%
GGAGTGGGTGTCCAATATTG+TGG + chr1_3:61611931-61611950 Msa0131050:CDS 50.0%
ATCATCAGCTGTCAGCAAGG+AGG + chr1_3:61612006-61612025 Msa0131050:CDS 50.0%
!! AGCAGGAACTGCTGCTTTCA+AGG - chr1_3:61612075-61612094 None:intergenic 50.0%
! TGTGGTTTTTCCACCAGAGC+AGG - chr1_3:61612092-61612111 None:intergenic 50.0%
TGCTCTGGTGGAAAAACCAC+AGG + chr1_3:61612091-61612110 Msa0131050:CDS 50.0%
GCTCTGGTGGAAAAACCACA+GGG + chr1_3:61612092-61612111 Msa0131050:CDS 50.0%
AACGAGGATTGAAGGCTGTG+GGG - chr1_3:61612171-61612190 None:intergenic 50.0%
GAACGAGGATTGAAGGCTGT+GGG - chr1_3:61612172-61612191 None:intergenic 50.0%
AGAACGAGGATTGAAGGCTG+TGG - chr1_3:61612173-61612192 None:intergenic 50.0%
CATGGCAGAACGAGGATTGA+AGG - chr1_3:61612179-61612198 None:intergenic 50.0%
ATGAGTTGCATGGCAGAACG+AGG - chr1_3:61612187-61612206 None:intergenic 50.0%
CCCTACTTCCTCTTCTGTTG+AGG + chr1_3:61612210-61612229 Msa0131050:CDS 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG - chr1_3:61612322-61612341 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG - chr1_3:61612475-61612494 None:intergenic 50.0%
TTGCGGTGTACGCTACAAGT+CGG + chr1_3:61612501-61612520 Msa0131050:CDS 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG - chr1_3:61612550-61612569 None:intergenic 50.0%
TGCACAGCTGGACAAAACGT+TGG - chr1_3:61612562-61612581 None:intergenic 50.0%
TGAAGGGAACTGAGCCTAGT+TGG + chr1_3:61612691-61612710 Msa0131050:exon 50.0%
GAGAGAGGGGAATAGTGTGT+TGG - chr1_3:61609063-61609082 None:intergenic 50.0%
AAGGTGTGAGAGAGAGAGAG+GGG - chr1_3:61609076-61609095 None:intergenic 50.0%
CGCGGCAAACTACAACTCAT+TGG + chr1_3:61610338-61610357 Msa0131050:CDS 50.0%
CTGGCCAAATGAGTCTGACT+CGG + chr1_3:61610368-61610387 Msa0131050:CDS 50.0%
!!! GAGTCTGACTCGGTGTTTTC+CGG + chr1_3:61610378-61610397 Msa0131050:CDS 50.0%
TAGTACTTCAGACCTCTCGG+CGG + chr1_3:61610404-61610423 Msa0131050:CDS 50.0%
TCTCTACTCACCGGATCAAC+GGG - chr1_3:61610435-61610454 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG - chr1_3:61610436-61610455 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG - chr1_3:61610593-61610612 None:intergenic 50.0%
ACATAATCCGTGTGACAGGC+TGG - chr1_3:61610634-61610653 None:intergenic 50.0%
! AGCCTGTCACACGGATTATG+TGG + chr1_3:61610633-61610652 Msa0131050:intron 50.0%
CCTCAAATTGGAGAGTAGGG+TGG - chr1_3:61611305-61611324 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG + chr1_3:61611302-61611321 Msa0131050:intron 50.0%
CACCCCTCAAATTGGAGAGT+AGG - chr1_3:61611309-61611328 None:intergenic 50.0%
GGAGTGGGTGTCCAATATTG+TGG + chr1_3:61611931-61611950 Msa0131050:CDS 50.0%
ATCATCAGCTGTCAGCAAGG+AGG + chr1_3:61612006-61612025 Msa0131050:CDS 50.0%
!! AGCAGGAACTGCTGCTTTCA+AGG - chr1_3:61612075-61612094 None:intergenic 50.0%
! TGTGGTTTTTCCACCAGAGC+AGG - chr1_3:61612092-61612111 None:intergenic 50.0%
TGCTCTGGTGGAAAAACCAC+AGG + chr1_3:61612091-61612110 Msa0131050:CDS 50.0%
GCTCTGGTGGAAAAACCACA+GGG + chr1_3:61612092-61612111 Msa0131050:CDS 50.0%
AACGAGGATTGAAGGCTGTG+GGG - chr1_3:61612171-61612190 None:intergenic 50.0%
GAACGAGGATTGAAGGCTGT+GGG - chr1_3:61612172-61612191 None:intergenic 50.0%
AGAACGAGGATTGAAGGCTG+TGG - chr1_3:61612173-61612192 None:intergenic 50.0%
CATGGCAGAACGAGGATTGA+AGG - chr1_3:61612179-61612198 None:intergenic 50.0%
ATGAGTTGCATGGCAGAACG+AGG - chr1_3:61612187-61612206 None:intergenic 50.0%
CCCTACTTCCTCTTCTGTTG+AGG + chr1_3:61612210-61612229 Msa0131050:CDS 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG - chr1_3:61612322-61612341 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG - chr1_3:61612475-61612494 None:intergenic 50.0%
TTGCGGTGTACGCTACAAGT+CGG + chr1_3:61612501-61612520 Msa0131050:CDS 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG - chr1_3:61612550-61612569 None:intergenic 50.0%
TGCACAGCTGGACAAAACGT+TGG - chr1_3:61612562-61612581 None:intergenic 50.0%
TGAAGGGAACTGAGCCTAGT+TGG + chr1_3:61612691-61612710 Msa0131050:exon 50.0%
! TTGTAGTTTGCCGCGGAGGA+GGG - chr1_3:61610333-61610352 None:intergenic 55.0%
! TGAGTTGTAGTTTGCCGCGG+AGG - chr1_3:61610337-61610356 None:intergenic 55.0%
CTCTACTCACCGGATCAACG+GGG - chr1_3:61610434-61610453 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG - chr1_3:61611317-61611336 None:intergenic 55.0%
CTGTCAGCAAGGAGGACTCT+GGG + chr1_3:61612014-61612033 Msa0131050:CDS 55.0%
GAAAGCAGCAGTTCCTGCTC+TGG + chr1_3:61612076-61612095 Msa0131050:CDS 55.0%
GATGGGGACGTAAATCCCTG+TGG - chr1_3:61612110-61612129 None:intergenic 55.0%
ATCTGAAGACAGCGCCTTGG+TGG - chr1_3:61612260-61612279 None:intergenic 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG - chr1_3:61612370-61612389 None:intergenic 55.0%
TTCTGTTCGCCACTGTCAGC+TGG - chr1_3:61612385-61612404 None:intergenic 55.0%
GCTGACAGTGGCGAACAGAA+TGG + chr1_3:61612385-61612404 Msa0131050:CDS 55.0%
TGCCCTCCATTGTGGAGTCT+TGG - chr1_3:61612449-61612468 None:intergenic 55.0%
AAGACTCCACAATGGAGGGC+AGG + chr1_3:61612448-61612467 Msa0131050:CDS 55.0%
ATTGGACCTGCCCTCCATTG+TGG - chr1_3:61612457-61612476 None:intergenic 55.0%
ACAATGGAGGGCAGGTCCAA+TGG + chr1_3:61612456-61612475 Msa0131050:CDS 55.0%
CAATGGAGGGCAGGTCCAAT+GGG + chr1_3:61612457-61612476 Msa0131050:CDS 55.0%
AATGGAGGGCAGGTCCAATG+GGG + chr1_3:61612458-61612477 Msa0131050:CDS 55.0%
TGCGGTGTACGCTACAAGTC+GGG + chr1_3:61612502-61612521 Msa0131050:CDS 55.0%
GCCGACTATTCCCCGAATAC+CGG + chr1_3:61612524-61612543 Msa0131050:CDS 55.0%
GCCGGTATTCGGGGAATAGT+CGG - chr1_3:61612528-61612547 None:intergenic 55.0%
ACTAGCAGCAGGCCGGTATT+CGG - chr1_3:61612539-61612558 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG - chr1_3:61612574-61612593 None:intergenic 55.0%
ACGCGACTCTAGATAAGGCG+AGG - chr1_3:61612729-61612748 None:intergenic 55.0%
AGGGCTGGAATGGGGAGAAT+AGG + chr1_3:61612809-61612828 Msa0131050:three_prime_UTR 55.0%
! TTGTAGTTTGCCGCGGAGGA+GGG - chr1_3:61610333-61610352 None:intergenic 55.0%
! TGAGTTGTAGTTTGCCGCGG+AGG - chr1_3:61610337-61610356 None:intergenic 55.0%
CTCTACTCACCGGATCAACG+GGG - chr1_3:61610434-61610453 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG - chr1_3:61611317-61611336 None:intergenic 55.0%
CTGTCAGCAAGGAGGACTCT+GGG + chr1_3:61612014-61612033 Msa0131050:CDS 55.0%
GAAAGCAGCAGTTCCTGCTC+TGG + chr1_3:61612076-61612095 Msa0131050:CDS 55.0%
GATGGGGACGTAAATCCCTG+TGG - chr1_3:61612110-61612129 None:intergenic 55.0%
ATCTGAAGACAGCGCCTTGG+TGG - chr1_3:61612260-61612279 None:intergenic 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG - chr1_3:61612370-61612389 None:intergenic 55.0%
TTCTGTTCGCCACTGTCAGC+TGG - chr1_3:61612385-61612404 None:intergenic 55.0%
GCTGACAGTGGCGAACAGAA+TGG + chr1_3:61612385-61612404 Msa0131050:CDS 55.0%
TGCCCTCCATTGTGGAGTCT+TGG - chr1_3:61612449-61612468 None:intergenic 55.0%
AAGACTCCACAATGGAGGGC+AGG + chr1_3:61612448-61612467 Msa0131050:CDS 55.0%
ATTGGACCTGCCCTCCATTG+TGG - chr1_3:61612457-61612476 None:intergenic 55.0%
ACAATGGAGGGCAGGTCCAA+TGG + chr1_3:61612456-61612475 Msa0131050:CDS 55.0%
CAATGGAGGGCAGGTCCAAT+GGG + chr1_3:61612457-61612476 Msa0131050:CDS 55.0%
AATGGAGGGCAGGTCCAATG+GGG + chr1_3:61612458-61612477 Msa0131050:CDS 55.0%
TGCGGTGTACGCTACAAGTC+GGG + chr1_3:61612502-61612521 Msa0131050:CDS 55.0%
GCCGACTATTCCCCGAATAC+CGG + chr1_3:61612524-61612543 Msa0131050:CDS 55.0%
GCCGGTATTCGGGGAATAGT+CGG - chr1_3:61612528-61612547 None:intergenic 55.0%
ACTAGCAGCAGGCCGGTATT+CGG - chr1_3:61612539-61612558 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG - chr1_3:61612574-61612593 None:intergenic 55.0%
ACGCGACTCTAGATAAGGCG+AGG - chr1_3:61612729-61612748 None:intergenic 55.0%
AGGGCTGGAATGGGGAGAAT+AGG + chr1_3:61612809-61612828 Msa0131050:three_prime_UTR 55.0%
! AGCGGTGTCAACGTCGTCGA+CGG - chr1_3:61610298-61610317 None:intergenic 60.0%
! GTTGTAGTTTGCCGCGGAGG+AGG - chr1_3:61610334-61610353 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG + chr1_3:61612013-61612032 Msa0131050:CDS 60.0%
AGCAGCAGTTCCTGCTCTGG+TGG + chr1_3:61612079-61612098 Msa0131050:CDS 60.0%
CCACTGTCAGCTGGAGCAGT+AGG - chr1_3:61612376-61612395 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG + chr1_3:61612373-61612392 Msa0131050:CDS 60.0%
TAGCAGCAGGCCGGTATTCG+GGG - chr1_3:61612537-61612556 None:intergenic 60.0%
CTAGCAGCAGGCCGGTATTC+GGG - chr1_3:61612538-61612557 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG - chr1_3:61612546-61612565 None:intergenic 60.0%
! AGCGGTGTCAACGTCGTCGA+CGG - chr1_3:61610298-61610317 None:intergenic 60.0%
! GTTGTAGTTTGCCGCGGAGG+AGG - chr1_3:61610334-61610353 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG + chr1_3:61612013-61612032 Msa0131050:CDS 60.0%
AGCAGCAGTTCCTGCTCTGG+TGG + chr1_3:61612079-61612098 Msa0131050:CDS 60.0%
CCACTGTCAGCTGGAGCAGT+AGG - chr1_3:61612376-61612395 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG + chr1_3:61612373-61612392 Msa0131050:CDS 60.0%
TAGCAGCAGGCCGGTATTCG+GGG - chr1_3:61612537-61612556 None:intergenic 60.0%
CTAGCAGCAGGCCGGTATTC+GGG - chr1_3:61612538-61612557 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG - chr1_3:61612546-61612565 None:intergenic 60.0%
! CGGTGTCAACGTCGTCGACG+GGG - chr1_3:61610296-61610315 None:intergenic 65.0%
! GCGGTGTCAACGTCGTCGAC+GGG - chr1_3:61610297-61610316 None:intergenic 65.0%
GGAGGGCAATGAAGCGGCAG+CGG - chr1_3:61610316-61610335 None:intergenic 65.0%
CGCGGAGGAGGGCAATGAAG+CGG - chr1_3:61610322-61610341 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG + chr1_3:61610320-61610339 Msa0131050:CDS 65.0%
TTGGTGCGTGCACGTCCGCA+AGG - chr1_3:61612139-61612158 None:intergenic 65.0%
GGATTGAAGGCTGTGGGGCG+TGG - chr1_3:61612166-61612185 None:intergenic 65.0%
! CGGTGTCAACGTCGTCGACG+GGG - chr1_3:61610296-61610315 None:intergenic 65.0%
! GCGGTGTCAACGTCGTCGAC+GGG - chr1_3:61610297-61610316 None:intergenic 65.0%
GGAGGGCAATGAAGCGGCAG+CGG - chr1_3:61610316-61610335 None:intergenic 65.0%
CGCGGAGGAGGGCAATGAAG+CGG - chr1_3:61610322-61610341 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG + chr1_3:61610320-61610339 Msa0131050:CDS 65.0%
TTGGTGCGTGCACGTCCGCA+AGG - chr1_3:61612139-61612158 None:intergenic 65.0%
GGATTGAAGGCTGTGGGGCG+TGG - chr1_3:61612166-61612185 None:intergenic 65.0%
GGCGGAGCTCCCCGTTGATC+CGG + chr1_3:61610422-61610441 Msa0131050:CDS 70.0%
GTCCCCATCCCCGTGCCTTG+CGG + chr1_3:61612121-61612140 Msa0131050:CDS 70.0%
GTCCGCAAGGCACGGGGATG+GGG - chr1_3:61612126-61612145 None:intergenic 70.0%
CGTCCGCAAGGCACGGGGAT+GGG - chr1_3:61612127-61612146 None:intergenic 70.0%
ACGTCCGCAAGGCACGGGGA+TGG - chr1_3:61612128-61612147 None:intergenic 70.0%
GTGCACGTCCGCAAGGCACG+GGG - chr1_3:61612132-61612151 None:intergenic 70.0%
CGTGCACGTCCGCAAGGCAC+GGG - chr1_3:61612133-61612152 None:intergenic 70.0%
GCGTGCACGTCCGCAAGGCA+CGG - chr1_3:61612134-61612153 None:intergenic 70.0%
GGCGGAGCTCCCCGTTGATC+CGG + chr1_3:61610422-61610441 Msa0131050:CDS 70.0%
GTCCCCATCCCCGTGCCTTG+CGG + chr1_3:61612121-61612140 Msa0131050:CDS 70.0%
GTCCGCAAGGCACGGGGATG+GGG - chr1_3:61612126-61612145 None:intergenic 70.0%
CGTCCGCAAGGCACGGGGAT+GGG - chr1_3:61612127-61612146 None:intergenic 70.0%
ACGTCCGCAAGGCACGGGGA+TGG - chr1_3:61612128-61612147 None:intergenic 70.0%
GTGCACGTCCGCAAGGCACG+GGG - chr1_3:61612132-61612151 None:intergenic 70.0%
CGTGCACGTCCGCAAGGCAC+GGG - chr1_3:61612133-61612152 None:intergenic 70.0%
GCGTGCACGTCCGCAAGGCA+CGG - chr1_3:61612134-61612153 None:intergenic 70.0%
CAACGGGGAGCTCCGCCGAG+AGG - chr1_3:61610419-61610438 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG - chr1_3:61612158-61612177 None:intergenic 75.0%
CAACGGGGAGCTCCGCCGAG+AGG - chr1_3:61610419-61610438 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG - chr1_3:61612158-61612177 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61608967 61613065 61608967 ID=Msa0131050;Name=Msa0131050
chr1_3 mRNA 61608967 61613065 61608967 ID=Msa0131050-mRNA-1;Parent=Msa0131050;Name=Msa0131050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=173|1|1|1|0.25|0.2|5|372|331
chr1_3 exon 61608967 61608984 61608967 ID=Msa0131050-mRNA-1:exon:20477;Parent=Msa0131050-mRNA-1
chr1_3 exon 61609076 61609167 61609076 ID=Msa0131050-mRNA-1:exon:20478;Parent=Msa0131050-mRNA-1
chr1_3 exon 61609391 61609445 61609391 ID=Msa0131050-mRNA-1:exon:20479;Parent=Msa0131050-mRNA-1
chr1_3 exon 61610223 61610443 61610223 ID=Msa0131050-mRNA-1:exon:20480;Parent=Msa0131050-mRNA-1
chr1_3 exon 61611911 61613065 61611911 ID=Msa0131050-mRNA-1:exon:20481;Parent=Msa0131050-mRNA-1
chr1_3 five_prime_UTR 61608967 61608984 61608967 ID=Msa0131050-mRNA-1:five_prime_utr;Parent=Msa0131050-mRNA-1
chr1_3 five_prime_UTR 61609076 61609167 61609076 ID=Msa0131050-mRNA-1:five_prime_utr;Parent=Msa0131050-mRNA-1
chr1_3 five_prime_UTR 61609391 61609445 61609391 ID=Msa0131050-mRNA-1:five_prime_utr;Parent=Msa0131050-mRNA-1
chr1_3 five_prime_UTR 61610223 61610230 61610223 ID=Msa0131050-mRNA-1:five_prime_utr;Parent=Msa0131050-mRNA-1
chr1_3 CDS 61610231 61610443 61610231 ID=Msa0131050-mRNA-1:cds;Parent=Msa0131050-mRNA-1
chr1_3 CDS 61611911 61612693 61611911 ID=Msa0131050-mRNA-1:cds;Parent=Msa0131050-mRNA-1
chr1_3 three_prime_UTR 61612694 61613065 61612694 ID=Msa0131050-mRNA-1:three_prime_utr;Parent=Msa0131050-mRNA-1
Gene Sequence

>Msa0131050

ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATCTACCCCGTCGACGACGTTGACACCGCTGCCGCTTCATTGCCCTCCTCCGCGGCAAACTACAACTCATTGGCGAGTATCTGGCCAAATGAGTCTGACTCGGTGTTTTCCGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCTGGTGGAAAAACCACAGGGATTTACGTCCCCATCCCCGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAATCCTCGTTCTGCCATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCCACCAAGGCGCTGTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCAGCTGACAGTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTACGCTACAAGTCGGGCCGACTATTCCCCGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACTCCAATGTTCTCGCCTTGGAATACAACATTTGA

Protein sequence

>Msa0131050

MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAANYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKALSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNSNVLALEYNI*