AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182750 MtrunA17_Chr1g0209971 99.244 397 3 0 1 397 1 397 0.0 796
Msa0182750 MtrunA17_Chr7g0214981 65.152 396 112 8 1 396 1 370 6.85e-162 459
Msa0182750 MtrunA17_Chr2g0334051 55.416 397 145 8 1 396 1 366 1.62e-142 410
Msa0182750 MtrunA17_Chr1g0146801 63.529 85 29 1 1 83 1 85 3.90e-29 109
Msa0182750 MtrunA17_Chr7g0226581 65.789 76 26 0 1 76 205 280 5.35e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182750 AT3G02540.1 69.930 429 86 8 1 396 1 419 0.0 554
Msa0182750 AT3G02540.3 70.093 428 86 8 1 396 1 418 0.0 554
Msa0182750 AT5G38470.1 68.421 399 103 9 1 397 1 378 1.19e-177 499
Msa0182750 AT1G79650.1 56.281 398 145 9 1 396 1 371 2.51e-143 412
Msa0182750 AT1G79650.2 56.030 398 140 9 1 396 1 365 9.74e-143 410
Msa0182750 AT1G79650.4 54.087 416 150 10 1 396 1 395 8.52e-140 404
Msa0182750 AT1G16190.1 53.401 397 155 5 1 396 1 368 5.84e-139 401
Msa0182750 AT5G38470.2 66.265 332 91 8 1 330 1 313 9.45e-134 386
Msa0182750 AT1G16190.2 52.547 373 147 5 25 396 2 345 6.27e-126 367
Msa0182750 AT1G79650.3 52.261 398 141 10 1 396 1 351 1.65e-125 366
Msa0182750 AT3G02540.2 63.430 309 73 6 1 279 1 299 2.70e-115 338
Msa0182750 AT5G16090.1 60.526 76 30 0 1 76 1 76 1.04e-23 97.1
Msa0182750 AT5G16090.1 50.495 101 47 2 292 392 74 171 7.99e-23 94.7

Find 159 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTAGTAGCATATTT+TGG 0.123261 1_4:+71585469 Msa0182750:five_prime_UTR
TGCTGGAGCTTCAGCTTGTT+CGG 0.259679 1_4:-71588025 None:intergenic
GCAGCACCAGCACCAATATT+TGG 0.271370 1_4:-71588257 None:intergenic
CCTCCATAGGTTCGTTAATC+AGG 0.298756 1_4:-71588619 None:intergenic
ACTCATGCATGTGGTCTAAA+AGG 0.325713 1_4:-71589349 None:intergenic
AGGGAAGGTTCTGATGTCTA+TGG 0.340684 1_4:+71587653 Msa0182750:intron
ATGCTTTAGGAACAACCTAT+TGG 0.341168 1_4:+71588779 Msa0182750:intron
AGTTCAACAAATCCTAGATA+TGG 0.341539 1_4:+71587721 Msa0182750:CDS
GATCTTCACGCGTTACTTGC+GGG 0.343331 1_4:-71585431 None:intergenic
TGCTGCTGGTGCCGGTTCTC+TGG 0.344680 1_4:+71588274 Msa0182750:CDS
TTCACAGGTTGTGCACTTGC+AGG 0.353383 1_4:-71588060 None:intergenic
TCACGCGTTACTTGCGGGAT+TGG 0.356349 1_4:-71585426 None:intergenic
TGCTTTAGGAACAACCTATT+GGG 0.371188 1_4:+71588780 Msa0182750:intron
GTCAAATTACGCTTGTTAGA+AGG 0.372977 1_4:-71589630 None:intergenic
AATATTGGTGCTGGTGCTGC+TGG 0.379034 1_4:+71588260 Msa0182750:CDS
GGAGCTGCAGCTGCAGCCTC+AGG 0.380645 1_4:-71588084 None:intergenic
CTCATCTTATGAGATTGATT+CGG 0.386341 1_4:+71588573 Msa0182750:CDS
TCATCTTATGAGATTGATTC+GGG 0.386880 1_4:+71588574 Msa0182750:CDS
TTCAATAGCTTGGCGCTCCT+CGG 0.390524 1_4:-71588844 None:intergenic
TTACAGGGCCTGCCAAATAT+TGG 0.393136 1_4:+71588245 Msa0182750:intron
GAGATTGATTCGGGATCATC+AGG 0.398560 1_4:+71588583 Msa0182750:CDS
AAATATTCAACCGCCCTCTC+AGG 0.399566 1_4:-71587803 None:intergenic
TGGGCAGGCTGCATCTAATC+TGG 0.400887 1_4:+71587673 Msa0182750:CDS
GCTGGAGCTTCAGCTTGTTC+GGG 0.405755 1_4:-71588024 None:intergenic
GGCAAATCCACAAATATTGC+AGG 0.411244 1_4:+71588446 Msa0182750:CDS
AAGAAAACCTGCAATATTTG+TGG 0.413342 1_4:-71588453 None:intergenic
GTAGCAGTTGCCGAGGATAT+AGG 0.416272 1_4:-71587492 None:intergenic
TGGGAGGAGGAAGCTGGGAT+AGG 0.427311 1_4:+71587741 Msa0182750:CDS
CTTATACTTGGTGTTAAATG+AGG 0.430469 1_4:+71589451 Msa0182750:three_prime_UTR
AGGTCTAGAGGATTAGCATT+AGG 0.432634 1_4:-71588144 None:intergenic
TTAGGTCCACTTGAGGTAAC+AGG 0.432965 1_4:-71588126 None:intergenic
CCAAGTATAAGAAATTTAAA+AGG 0.434631 1_4:-71589439 None:intergenic
ATAGGAGCAGGAGCTGGAGC+TGG 0.438364 1_4:-71587474 None:intergenic
TAGCCTCGAAATTCGAAACT+AGG 0.438524 1_4:-71585590 None:intergenic
CAGCAGCCATCTGTCCCAAT+AGG 0.439096 1_4:-71588794 None:intergenic
GGTGCTGGTGCTGCTGGTGC+CGG 0.439464 1_4:+71588266 Msa0182750:CDS
TAGATATGGGAGGAGGAAGC+TGG 0.440681 1_4:+71587735 Msa0182750:CDS
ATCCCTAGTTTCGAATTTCG+AGG 0.442894 1_4:+71585587 Msa0182750:five_prime_UTR
CACGGTGCCGCAGTTGCAGC+AGG 0.444802 1_4:-71587312 None:intergenic
GCACCATAGCTCGCAATGCT+TGG 0.445098 1_4:-71588422 None:intergenic
TTTGCCAAGCTCTTGTAGCA+TGG 0.451224 1_4:-71588543 None:intergenic
GCTGCATCTAATCTGGTTGC+CGG 0.462863 1_4:+71587680 Msa0182750:CDS
CATTGTGATCATGCTTTCAA+AGG 0.464553 1_4:+71586656 Msa0182750:CDS
AACTTACACGTTCAATAGCT+TGG 0.465361 1_4:-71588854 None:intergenic
CTTATTGCAGCTTGAAGCAA+TGG 0.466176 1_4:+71589256 Msa0182750:intron
GCAGGCGCTCGGGACACTGC+TGG 0.466866 1_4:-71588042 None:intergenic
TCAATAGCTTGGCGCTCCTC+GGG 0.468475 1_4:-71588843 None:intergenic
CAGCCCATGCTACAAGAGCT+TGG 0.469143 1_4:+71588539 Msa0182750:intron
AATTTCGAGGCTATTCTTTG+CGG 0.469392 1_4:+71585600 Msa0182750:five_prime_UTR
AGCTTCCTCCTCCCATATCT+AGG 0.469763 1_4:-71587733 None:intergenic
CGCCCTCTCAGGGTTATTGA+AGG 0.470824 1_4:-71587792 None:intergenic
GAAGGTGCAGCAACAGATGC+AGG 0.472270 1_4:-71587450 None:intergenic
GTTCAACAAATCCTAGATAT+GGG 0.475757 1_4:+71587722 Msa0182750:CDS
GAACCTATGGAGGGCGGAGA+AGG 0.477244 1_4:+71588629 Msa0182750:CDS
CCTGCTCCTGTTACCTCAAG+TGG 0.477887 1_4:+71588120 Msa0182750:CDS
CGAAGTCACGCCACAAGACT+CGG 0.479179 1_4:+71585676 Msa0182750:CDS
TTGTGCACTTGCAGGCGCTC+GGG 0.479546 1_4:-71588052 None:intergenic
TCGCCTGATTAACGAACCTA+TGG 0.480298 1_4:+71588616 Msa0182750:CDS
GGAAATGAGAAGGTCATGTA+AGG 0.481331 1_4:-71589544 None:intergenic
GTTGTGCACTTGCAGGCGCT+CGG 0.483214 1_4:-71588053 None:intergenic
AGTAAGCCCGCGTCTGGTGA+AGG 0.483949 1_4:+71587057 Msa0182750:CDS
CAGCAAATGCTTATTCATCA+AGG 0.483953 1_4:+71586576 Msa0182750:CDS
TTGCCAAGCTCTTGTAGCAT+GGG 0.484703 1_4:-71588542 None:intergenic
TGATCTTCACGCGTTACTTG+CGG 0.487918 1_4:-71585432 None:intergenic
GGGAGGAGGAAGCTGGGATA+GGG 0.488129 1_4:+71587742 Msa0182750:CDS
GCAGGAGCTGGAGCTGGGGA+AGG 0.489970 1_4:-71587468 None:intergenic
TGATCGTGCTATAGTATTGG+AGG 0.491124 1_4:+71589283 Msa0182750:CDS
CACCAGCACCAATATTTGGC+AGG 0.492935 1_4:-71588253 None:intergenic
CACCCTTCTCCGCCCTCCAT+AGG 0.495258 1_4:-71588632 None:intergenic
AGGTTCTGATGTCTATGGGC+AGG 0.496402 1_4:+71587658 Msa0182750:CDS
AGGTAGGCTATATATAAACT+TGG 0.498863 1_4:-71589667 None:intergenic
TAGGAGCAGGAGCTGGAGCT+GGG 0.499444 1_4:-71587473 None:intergenic
GCGTAGAAAATCCAGAGAAC+CGG 0.500402 1_4:-71588285 None:intergenic
GCAAATGACTATGTATATGA+AGG 0.502025 1_4:-71589582 None:intergenic
ATAAGCATTTGCTGTGCAGC+AGG 0.503524 1_4:-71586567 None:intergenic
CCACTTGAGGTAACAGGAGC+AGG 0.508160 1_4:-71588120 None:intergenic
TGGCAGAGTAAGCCCGCGTC+TGG 0.509702 1_4:+71587051 Msa0182750:intron
AGCTCCTGCTCCTATATCCT+CGG 0.510256 1_4:+71587482 Msa0182750:CDS
TCTCAAGTTGACTGTGGACA+AGG 0.521567 1_4:+71589495 Msa0182750:three_prime_UTR
AGCCTCGAAATTCGAAACTA+GGG 0.521769 1_4:-71585589 None:intergenic
TCTGGTTGCCGGTAGCAACT+TGG 0.522344 1_4:+71587691 Msa0182750:CDS
CCTGATTAACGAACCTATGG+AGG 0.524546 1_4:+71588619 Msa0182750:CDS
GGTTGCCGGTAGCAACTTGG+AGG 0.526533 1_4:+71587694 Msa0182750:CDS
TCCTCTAGACCTCTTTCCCC+AGG 0.527390 1_4:+71588155 Msa0182750:CDS
CGACTGTTACCTGGGGAAAG+AGG 0.528080 1_4:-71588164 None:intergenic
GAAGGATGGTACCACCTTGG+AGG 0.528142 1_4:+71586608 Msa0182750:CDS
CAAACTTCTCTCACCTTCGC+TGG 0.531589 1_4:-71587102 None:intergenic
TGTTCCCTCCAAGTTGCTAC+CGG 0.534141 1_4:-71587699 None:intergenic
TTATTGCAGCTTGAAGCAAT+GGG 0.537260 1_4:+71589257 Msa0182750:intron
TCTCATTTCCTCCCCATCGA+GGG 0.537788 1_4:+71589557 Msa0182750:three_prime_UTR
CATGTGGTCTAAAAGGTAGT+TGG 0.538667 1_4:-71589342 None:intergenic
ATAGACATCTACACCTTGAA+CGG 0.540608 1_4:-71586544 None:intergenic
GTTCCAAGCATTGCGAGCTA+TGG 0.544462 1_4:+71588419 Msa0182750:intron
GGAGCAGGCTGAGCTGCTTG+TGG 0.545404 1_4:-71588105 None:intergenic
TATATGAAGGAGCCCTCGAT+GGG 0.547845 1_4:-71589569 None:intergenic
TTTGCGGCGATCGAAGATGA+AGG 0.550057 1_4:+71585616 Msa0182750:exon
GGGAAGGTTCTGATGTCTAT+GGG 0.550980 1_4:+71587654 Msa0182750:intron
TAGGAGCAGCACTTGTCTGT+GGG 0.552599 1_4:-71587254 None:intergenic
GCTGCAGCCTCAGGATTCAC+AGG 0.553492 1_4:-71588075 None:intergenic
AGCATTGCGAGCTATGGTGC+AGG 0.553590 1_4:+71588425 Msa0182750:CDS
CTATTGGGACAGATGGCTGC+TGG 0.554126 1_4:+71588795 Msa0182750:CDS
AATATTCAACCGCCCTCTCA+GGG 0.556278 1_4:-71587802 None:intergenic
TCAAGCTCCTGCTGCAACTG+CGG 0.558262 1_4:+71587305 Msa0182750:CDS
GAGGATATAGGAGCAGGAGC+TGG 0.559984 1_4:-71587480 None:intergenic
GTTGCCGAGGATATAGGAGC+AGG 0.561804 1_4:-71587486 None:intergenic
GGCCTGCCAAATATTGGTGC+TGG 0.565166 1_4:+71588251 Msa0182750:CDS
TAATTTGGAAATCATTGGAA+AGG 0.565168 1_4:-71589389 None:intergenic
TTTGAAGGATGGTACCACCT+TGG 0.566393 1_4:+71586605 Msa0182750:CDS
GTAGGAGCAGCACTTGTCTG+TGG 0.567111 1_4:-71587255 None:intergenic
AGATATGGGAGGAGGAAGCT+GGG 0.572319 1_4:+71587736 Msa0182750:CDS
ATGTAAGGGCGGCAATGAGA+AGG 0.572922 1_4:-71589529 None:intergenic
TTCTCATTTCCTCCCCATCG+AGG 0.575254 1_4:+71589556 Msa0182750:three_prime_UTR
GTAAGCCCGCGTCTGGTGAA+GGG 0.575627 1_4:+71587058 Msa0182750:CDS
GGTAGGCTATATATAAACTT+GGG 0.576843 1_4:-71589666 None:intergenic
GGATAAAAGAAAGAGTGAAA+AGG 0.577620 1_4:-71585544 None:intergenic
GAACAACCTATTGGGACAGA+TGG 0.579220 1_4:+71588788 Msa0182750:CDS
GTGGTCTAAAAGGTAGTTGG+CGG 0.579276 1_4:-71589339 None:intergenic
TTCAAATGCTCCTCCAGCGA+AGG 0.580319 1_4:+71587089 Msa0182750:CDS
CAAATCCTAGATATGGGAGG+AGG 0.580761 1_4:+71587728 Msa0182750:CDS
AACCTATGGAGGGCGGAGAA+GGG 0.586771 1_4:+71588630 Msa0182750:CDS
AGGAGCAGGAGCTGGAGCTG+GGG 0.587268 1_4:-71587472 None:intergenic
ACCTGGGGAAAGAGGTCTAG+AGG 0.592015 1_4:-71588156 None:intergenic
GTATATGAAGGAGCCCTCGA+TGG 0.597147 1_4:-71589570 None:intergenic
CTTGAGGTGAAACAGACACT+GGG 0.598069 1_4:-71587287 None:intergenic
AGTAGACCCTTCACCAGACG+CGG 0.598769 1_4:-71587064 None:intergenic
AGCAAATGCTTATTCATCAA+GGG 0.601247 1_4:+71586577 Msa0182750:CDS
TGAAGGAGCCCTCGATGGGG+AGG 0.605340 1_4:-71589565 None:intergenic
CGAATCAATCTCATAAGATG+AGG 0.606271 1_4:-71588572 None:intergenic
GCTTGAGGTGAAACAGACAC+TGG 0.613953 1_4:-71587288 None:intergenic
TGCCTTCAATAACCCTGAGA+GGG 0.615258 1_4:+71587790 Msa0182750:CDS
GCAGTTGCAGCAGGAGCTTG+AGG 0.616444 1_4:-71587303 None:intergenic
CTCAAGTTGACTGTGGACAA+GGG 0.617111 1_4:+71589496 Msa0182750:three_prime_UTR
TTCGAAGACCAAAACGACGA+CGG 0.618865 1_4:-71585565 None:intergenic
ACTTCTCTCACCTTCGCTGG+AGG 0.619890 1_4:-71587099 None:intergenic
TAGGTTCGTTAATCAGGCGA+AGG 0.621575 1_4:-71588613 None:intergenic
CTGATTAACGAACCTATGGA+GGG 0.626493 1_4:+71588620 Msa0182750:CDS
ATTAGCATTAGGTCCACTTG+AGG 0.629093 1_4:-71588133 None:intergenic
TATTTACGTAGCAGTTGCCG+AGG 0.633237 1_4:-71587499 None:intergenic
CTTCAATAACCCTGAGAGGG+CGG 0.633530 1_4:+71587793 Msa0182750:CDS
TGAGGGAAAACCGAGTCTTG+TGG 0.634415 1_4:-71585686 None:intergenic
GAGGTGAAACAGACACTGGG+GGG 0.636174 1_4:-71587284 None:intergenic
AGGAGCAGCACTTGTCTGTG+GGG 0.638148 1_4:-71587253 None:intergenic
GTTCGTCGAACTCATGCATG+TGG 0.641221 1_4:-71589358 None:intergenic
ACAATCTCTCAAGTTGACTG+TGG 0.650014 1_4:+71589489 Msa0182750:three_prime_UTR
CTGCCTTCAATAACCCTGAG+AGG 0.652037 1_4:+71587789 Msa0182750:CDS
GAAATGAGAAGGTCATGTAA+GGG 0.654393 1_4:-71589543 None:intergenic
ATCAGTAACTGTCACACCCG+AGG 0.657070 1_4:+71588827 Msa0182750:CDS
TGAGGTGAAACAGACACTGG+GGG 0.659088 1_4:-71587285 None:intergenic
GTAGACCCTTCACCAGACGC+GGG 0.666940 1_4:-71587063 None:intergenic
GGTGTGACAGTTACTGATTG+TGG 0.672986 1_4:-71588822 None:intergenic
GTTGCCGGTAGCAACTTGGA+GGG 0.675122 1_4:+71587695 Msa0182750:CDS
ATGAGAAGGTCATGTAAGGG+CGG 0.678661 1_4:-71589540 None:intergenic
TCGATGGGGAGGAAATGAGA+AGG 0.679006 1_4:-71589554 None:intergenic
CAACAAATCCTAGATATGGG+AGG 0.680457 1_4:+71587725 Msa0182750:CDS
AGGTGAAACAGACACTGGGG+GGG 0.685526 1_4:-71587283 None:intergenic
TGCACAACCTGTGAATCCTG+AGG 0.701039 1_4:+71588068 Msa0182750:CDS
ATTAACGAACCTATGGAGGG+CGG 0.702160 1_4:+71588623 Msa0182750:CDS
TTGAGGTGAAACAGACACTG+GGG 0.743648 1_4:-71587286 None:intergenic
ATATGAAGGAGCCCTCGATG+GGG 0.744643 1_4:-71589568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATTTTTGAGTTT+TGG + chr1_4:71586803-71586822 Msa0182750:intron 10.0%
!!! AGAACTTTTTTTTTAATATA+TGG + chr1_4:71587031-71587050 Msa0182750:intron 10.0%
!! ATTTAAATAAAAAATTAACC+AGG - chr1_4:71587977-71587996 None:intergenic 10.0%
!! ATAAAAAAAAAAAATTCTTC+TGG + chr1_4:71588202-71588221 Msa0182750:intron 10.0%
!! TAAAAAAAAAAAATTCTTCT+GGG + chr1_4:71588203-71588222 Msa0182750:intron 10.0%
!!! TTATAATTGTTTTTGTATAT+TGG + chr1_4:71588688-71588707 Msa0182750:intron 10.0%
!!! ATAATTTTGTACATTGAAAA+TGG + chr1_4:71587565-71587584 Msa0182750:intron 15.0%
!!! AAGATTAAATTTTTTGAAAC+AGG + chr1_4:71587633-71587652 Msa0182750:intron 15.0%
!!! AGATTAAATTTTTTGAAACA+GGG + chr1_4:71587634-71587653 Msa0182750:intron 15.0%
!! AAAATACAATAAATAGGTAA+CGG - chr1_4:71588982-71589001 None:intergenic 15.0%
!!! ACATTATACATTTGTTAATT+AGG + chr1_4:71589055-71589074 Msa0182750:intron 15.0%
!! AAAAATAATTTGGAAATCAT+TGG - chr1_4:71589397-71589416 None:intergenic 15.0%
!! AAAGATAACGAAAAATAATT+TGG - chr1_4:71589407-71589426 None:intergenic 15.0%
!!! AATAAACTAGTAGCATATTT+TGG + chr1_4:71585469-71585488 Msa0182750:five_prime_UTR 20.0%
!!! ATAAACTAGTAGCATATTTT+GGG + chr1_4:71585470-71585489 Msa0182750:five_prime_UTR 20.0%
!! ATTTGATTGTTAGTTAAGTT+AGG + chr1_4:71585817-71585836 Msa0182750:intron 20.0%
!! TTTGATTGTTAGTTAAGTTA+GGG + chr1_4:71585818-71585837 Msa0182750:intron 20.0%
!!! TTCTGAATTATGATTTTTAG+TGG + chr1_4:71585987-71586006 Msa0182750:intron 20.0%
!!! TCTGAATTATGATTTTTAGT+GGG + chr1_4:71585988-71586007 Msa0182750:intron 20.0%
!!! GAATTTTGTTGTTAAGTTTT+TGG + chr1_4:71586010-71586029 Msa0182750:intron 20.0%
!!! TATTATTTTTGAGTTTTGGT+TGG + chr1_4:71586807-71586826 Msa0182750:intron 20.0%
!! ATAGAATATAACAAGCATTA+AGG - chr1_4:71586996-71587015 None:intergenic 20.0%
!!! AATGCTTGTTATATTCTATT+CGG + chr1_4:71586997-71587016 Msa0182750:intron 20.0%
!!! TTTTTTGTTGTTATATTTGC+TGG + chr1_4:71587156-71587175 Msa0182750:intron 20.0%
!!! TTTTTGTTGTTATATTTGCT+GGG + chr1_4:71587157-71587176 Msa0182750:intron 20.0%
!!! TTGAGTTGTTTAGATATATT+TGG + chr1_4:71587361-71587380 Msa0182750:intron 20.0%
!! ATTCTGTTTACTTTAATGTT+TGG + chr1_4:71587521-71587540 Msa0182750:intron 20.0%
!!! TTACTTTAATGTTTGGAATT+TGG + chr1_4:71587528-71587547 Msa0182750:intron 20.0%
!! AATATAAGACATAACTACTA+AGG - chr1_4:71588483-71588502 None:intergenic 20.0%
!!! ATTGTTTTTGTATATTGGAA+TGG + chr1_4:71588693-71588712 Msa0182750:intron 20.0%
!!! TTGTTTTTGTATATTGGAAT+GGG + chr1_4:71588694-71588713 Msa0182750:intron 20.0%
!! TTGTTATATATTTGAGTCTT+AGG + chr1_4:71589138-71589157 Msa0182750:intron 20.0%
!! AAATTACAAAATACAGAGAA+AGG - chr1_4:71589213-71589232 None:intergenic 20.0%
!!! TCTGTATTTTGTAATTTATG+TGG + chr1_4:71589216-71589235 Msa0182750:intron 20.0%
!!! CTGTATTTTGTAATTTATGT+GGG + chr1_4:71589217-71589236 Msa0182750:intron 20.0%
!! CCAAGTATAAGAAATTTAAA+AGG - chr1_4:71589442-71589461 None:intergenic 20.0%
!!! CCTTTTAAATTTCTTATACT+TGG + chr1_4:71589439-71589458 Msa0182750:three_prime_UTR 20.0%
!! TAAACTAGTAGCATATTTTG+GGG + chr1_4:71585471-71585490 Msa0182750:five_prime_UTR 25.0%
!!! GTTGTTGATTTGAATTTTCT+TGG + chr1_4:71585884-71585903 Msa0182750:intron 25.0%
!! TTTAAGTTATGATTTCGATG+TGG + chr1_4:71585931-71585950 Msa0182750:intron 25.0%
!!! GTTGTTAAGTTTTTGGTTAT+TGG + chr1_4:71586017-71586036 Msa0182750:intron 25.0%
! AAAATCTCTTCATAAGTACT+AGG + chr1_4:71586129-71586148 Msa0182750:intron 25.0%
! GAGGTTAAATTCACTAAATA+AGG - chr1_4:71586360-71586379 None:intergenic 25.0%
! ATATAGCAGAAAAACAATTG+TGG - chr1_4:71586465-71586484 None:intergenic 25.0%
!! TTCTATATTTTTCTTGACTG+CGG - chr1_4:71586523-71586542 None:intergenic 25.0%
! AAAAATATAGAAACCGTTCA+AGG + chr1_4:71586531-71586550 Msa0182750:CDS 25.0%
!!! TTTTGTTGTTATATTTGCTG+GGG + chr1_4:71587158-71587177 Msa0182750:intron 25.0%
! AACAATTATGTATTCTTTGC+AGG + chr1_4:71587230-71587249 Msa0182750:intron 25.0%
! AATCTTCATTTCAATTTGAC+AGG + chr1_4:71587427-71587446 Msa0182750:intron 25.0%
! TAATGGAACAATCAAGATAA+TGG - chr1_4:71587599-71587618 None:intergenic 25.0%
!! CTTTTAGCAACATAGTTTAA+TGG - chr1_4:71587616-71587635 None:intergenic 25.0%
!!! TAAATTTTTTGAAACAGGGA+AGG + chr1_4:71587638-71587657 Msa0182750:intron 25.0%
! TTCCTATATATTACAGTTAC+CGG + chr1_4:71587874-71587893 Msa0182750:intron 25.0%
! AAGAATCATCAAGAAATAAC+AGG - chr1_4:71587909-71587928 None:intergenic 25.0%
!! GATTCTTACATATCTTGTTT+CGG + chr1_4:71587922-71587941 Msa0182750:intron 25.0%
!!! GTTTGAGTCTTATATGATTT+TGG + chr1_4:71587947-71587966 Msa0182750:intron 25.0%
! AAAAAAAAAATTCTTCTGGG+TGG + chr1_4:71588206-71588225 Msa0182750:intron 25.0%
! TATACTTAACTGTATGTTAC+AGG + chr1_4:71588229-71588248 Msa0182750:intron 25.0%
! ATACTTAACTGTATGTTACA+GGG + chr1_4:71588230-71588249 Msa0182750:intron 25.0%
! GCACTGAATTTATTACTTAT+AGG + chr1_4:71588350-71588369 Msa0182750:intron 25.0%
! CAAAACCTATTAAGACTATA+AGG + chr1_4:71588924-71588943 Msa0182750:intron 25.0%
!! TTAGTCCTTATAGTCTTAAT+AGG - chr1_4:71588932-71588951 None:intergenic 25.0%
! TATTAAGACTATAAGGACTA+AGG + chr1_4:71588931-71588950 Msa0182750:intron 25.0%
! GTCGAGAAAATACAATAAAT+AGG - chr1_4:71588988-71589007 None:intergenic 25.0%
! GTGCATAAATAGTTCAAATT+TGG + chr1_4:71589082-71589101 Msa0182750:intron 25.0%
! TTATATATTTGAGTCTTAGG+CGG + chr1_4:71589141-71589160 Msa0182750:intron 25.0%
!! TATTTTGTAATTTATGTGGG+TGG + chr1_4:71589220-71589239 Msa0182750:intron 25.0%
! TAATTTGGAAATCATTGGAA+AGG - chr1_4:71589392-71589411 None:intergenic 25.0%
!! TTTTTCGTTATCTTTTCTCT+CGG + chr1_4:71589412-71589431 Msa0182750:three_prime_UTR 25.0%
GGATAAAAGAAAGAGTGAAA+AGG - chr1_4:71585547-71585566 None:intergenic 30.0%
!!! GTGTTTTTTTTTTCCCTGTT+CGG + chr1_4:71585845-71585864 Msa0182750:intron 30.0%
AGTCAATAATTAACCGAACA+GGG - chr1_4:71585861-71585880 None:intergenic 30.0%
AAGTCAATAATTAACCGAAC+AGG - chr1_4:71585862-71585881 None:intergenic 30.0%
TGTTTGGATCATTACTTTCT+AGG + chr1_4:71586079-71586098 Msa0182750:intron 30.0%
CTCAATTATTGAAATTCTCG+TGG - chr1_4:71586231-71586250 None:intergenic 30.0%
GGTTCAGAATAAAAACAACA+CGG - chr1_4:71586444-71586463 None:intergenic 30.0%
AGCAAATGCTTATTCATCAA+GGG + chr1_4:71586577-71586596 Msa0182750:CDS 30.0%
!! AATCAATGTAGTTTTCGAGA+CGG - chr1_4:71586706-71586725 None:intergenic 30.0%
!!! ATTTTTGAGTTTTGGTTGGT+TGG + chr1_4:71586811-71586830 Msa0182750:intron 30.0%
TTTGTCTATTTAGCCATAAC+TGG + chr1_4:71586919-71586938 Msa0182750:intron 30.0%
AACATAATCAACTCCAGTTA+TGG - chr1_4:71586935-71586954 None:intergenic 30.0%
ACAAGCATTAAGGAATGAAA+AGG - chr1_4:71586986-71587005 None:intergenic 30.0%
! TGTTTTCAGTTCCTGTAAAT+GGG - chr1_4:71587204-71587223 None:intergenic 30.0%
AGATTCAGAGTTCATTTGAA+TGG - chr1_4:71587412-71587431 None:intergenic 30.0%
AGTTCAACAAATCCTAGATA+TGG + chr1_4:71587721-71587740 Msa0182750:CDS 30.0%
GTTCAACAAATCCTAGATAT+GGG + chr1_4:71587722-71587741 Msa0182750:CDS 30.0%
AACCGGTAACTGTAATATAT+AGG - chr1_4:71587879-71587898 None:intergenic 30.0%
! ATATATTACAGTTACCGGTT+TGG + chr1_4:71587879-71587898 Msa0182750:intron 30.0%
AAATAACAGGAATTCCAAAC+CGG - chr1_4:71587896-71587915 None:intergenic 30.0%
AAGAAAACCTGCAATATTTG+TGG - chr1_4:71588456-71588475 None:intergenic 30.0%
TGTCTTATATTCTCTTCTTG+TGG + chr1_4:71588492-71588511 Msa0182750:intron 30.0%
CTCATCTTATGAGATTGATT+CGG + chr1_4:71588573-71588592 Msa0182750:CDS 30.0%
! TCATCTTATGAGATTGATTC+GGG + chr1_4:71588574-71588593 Msa0182750:CDS 30.0%
AGAAAATGACAGATCGATTA+AGG - chr1_4:71588901-71588920 None:intergenic 30.0%
AAACTCGATCAACATATGTA+GGG - chr1_4:71589017-71589036 None:intergenic 30.0%
AAAACTCGATCAACATATGT+AGG - chr1_4:71589018-71589037 None:intergenic 30.0%
! CCATATTTCTGAGAAACAAT+AGG - chr1_4:71589112-71589131 None:intergenic 30.0%
! CCTATTGTTTCTCAGAAATA+TGG + chr1_4:71589109-71589128 Msa0182750:intron 30.0%
! ATTGTTTCTCAGAAATATGG+AGG + chr1_4:71589112-71589131 Msa0182750:intron 30.0%
TATATATTTGAGTCTTAGGC+GGG + chr1_4:71589142-71589161 Msa0182750:intron 30.0%
! TTTTGATCGTGCTATAGTAT+TGG + chr1_4:71589280-71589299 Msa0182750:CDS 30.0%
TTGCAACAAAAATGAGGAAT+TGG + chr1_4:71589316-71589335 Msa0182750:CDS 30.0%
!! CTTATACTTGGTGTTAAATG+AGG + chr1_4:71589451-71589470 Msa0182750:three_prime_UTR 30.0%
GCAAATGACTATGTATATGA+AGG - chr1_4:71589585-71589604 None:intergenic 30.0%
AATTTCGAGGCTATTCTTTG+CGG + chr1_4:71585600-71585619 Msa0182750:five_prime_UTR 35.0%
! GTTTTCGTCAAGACTCTTAA+AGG + chr1_4:71585638-71585657 Msa0182750:CDS 35.0%
GTGGTATGTAGAATATGATG+TGG + chr1_4:71585950-71585969 Msa0182750:intron 35.0%
GCAATGAAACTTCTGATCAA+AGG - chr1_4:71586191-71586210 None:intergenic 35.0%
! GTGGTGTTTGATAGTTATAC+TGG + chr1_4:71586399-71586418 Msa0182750:intron 35.0%
ATAGACATCTACACCTTGAA+CGG - chr1_4:71586547-71586566 None:intergenic 35.0%
CAGCAAATGCTTATTCATCA+AGG + chr1_4:71586576-71586595 Msa0182750:CDS 35.0%
!! TCATCAAGGGAAAGTTTTGA+AGG + chr1_4:71586590-71586609 Msa0182750:CDS 35.0%
!!! TACTTTATTTTCCTCCAAGG+TGG - chr1_4:71586622-71586641 None:intergenic 35.0%
!!! AGCTACTTTATTTTCCTCCA+AGG - chr1_4:71586625-71586644 None:intergenic 35.0%
CATTGTGATCATGCTTTCAA+AGG + chr1_4:71586656-71586675 Msa0182750:CDS 35.0%
CTGTGTTTGCGACAAAATAA+CGG - chr1_4:71586749-71586768 None:intergenic 35.0%
AGATCTTAACCACTCCAAAT+TGG - chr1_4:71586855-71586874 None:intergenic 35.0%
AGTTTATCCCAGCTATCTTA+AGG + chr1_4:71586887-71586906 Msa0182750:intron 35.0%
GTTTATCCCAGCTATCTTAA+GGG + chr1_4:71586888-71586907 Msa0182750:intron 35.0%
GAAGGATATTACCCATTTAC+AGG + chr1_4:71587190-71587209 Msa0182750:intron 35.0%
! CTGTTTTCAGTTCCTGTAAA+TGG - chr1_4:71587205-71587224 None:intergenic 35.0%
CATGTAAAACAAGTCACTCA+CGG - chr1_4:71587333-71587352 None:intergenic 35.0%
!!! TTATATGATTTTGGCTTGCC+TGG + chr1_4:71587956-71587975 Msa0182750:intron 35.0%
TGCAGCAATAACAAGAATCA+GGG - chr1_4:71588521-71588540 None:intergenic 35.0%
CGAATCAATCTCATAAGATG+AGG - chr1_4:71588575-71588594 None:intergenic 35.0%
ACTTGAAAATACCTGTCCAT+TGG + chr1_4:71588736-71588755 Msa0182750:intron 35.0%
AAAGCCAAAAAGTAAGCCAA+TGG - chr1_4:71588755-71588774 None:intergenic 35.0%
!! TTTGGCTTTCAACATGCTTT+AGG + chr1_4:71588766-71588785 Msa0182750:intron 35.0%
!! ATGCTTTAGGAACAACCTAT+TGG + chr1_4:71588779-71588798 Msa0182750:intron 35.0%
!! TGCTTTAGGAACAACCTATT+GGG + chr1_4:71588780-71588799 Msa0182750:intron 35.0%
AACTTACACGTTCAATAGCT+TGG - chr1_4:71588857-71588876 None:intergenic 35.0%
!! ATGTTGATCGAGTTTTGTCT+AGG + chr1_4:71589022-71589041 Msa0182750:intron 35.0%
ATATATTTGAGTCTTAGGCG+GGG + chr1_4:71589143-71589162 Msa0182750:intron 35.0%
AAAAATGTCCTAGAAACACC+AGG + chr1_4:71589178-71589197 Msa0182750:intron 35.0%
AAAATGTCCTAGAAACACCA+GGG + chr1_4:71589179-71589198 Msa0182750:intron 35.0%
TTATTGCAGCTTGAAGCAAT+GGG + chr1_4:71589257-71589276 Msa0182750:intron 35.0%
CTTTGCTTGCAACAAAAATG+AGG + chr1_4:71589310-71589329 Msa0182750:CDS 35.0%
GAAATGAGAAGGTCATGTAA+GGG - chr1_4:71589546-71589565 None:intergenic 35.0%
! GTCAAATTACGCTTGTTAGA+AGG - chr1_4:71589633-71589652 None:intergenic 35.0%
! TCTTTTATCCGTCGTCGTTT+TGG + chr1_4:71585557-71585576 Msa0182750:five_prime_UTR 40.0%
ATCCCTAGTTTCGAATTTCG+AGG + chr1_4:71585587-71585606 Msa0182750:five_prime_UTR 40.0%
AGCCTCGAAATTCGAAACTA+GGG - chr1_4:71585592-71585611 None:intergenic 40.0%
TAGCCTCGAAATTCGAAACT+AGG - chr1_4:71585593-71585612 None:intergenic 40.0%
GAGTCGAAATCAGAGTTTGA+GGG - chr1_4:71585706-71585725 None:intergenic 40.0%
TGAGTCGAAATCAGAGTTTG+AGG - chr1_4:71585707-71585726 None:intergenic 40.0%
AGTTCCACATTGTCTCTGTT+TGG + chr1_4:71586063-71586082 Msa0182750:intron 40.0%
TGATCCAAACAGAGACAATG+TGG - chr1_4:71586070-71586089 None:intergenic 40.0%
TGGACTGTCAAAAGTGATAC+CGG + chr1_4:71586314-71586333 Msa0182750:intron 40.0%
!!! CAAGGGAAAGTTTTGAAGGA+TGG + chr1_4:71586594-71586613 Msa0182750:CDS 40.0%
ATTGTGAAGCAGAAGTAGTC+TGG - chr1_4:71586784-71586803 None:intergenic 40.0%
TGGAATCTCACATGCCAATT+TGG + chr1_4:71586838-71586857 Msa0182750:intron 40.0%
TTGCTGGGGTATAGTAAAGA+AGG + chr1_4:71587172-71587191 Msa0182750:intron 40.0%
CAACAAATCCTAGATATGGG+AGG + chr1_4:71587725-71587744 Msa0182750:CDS 40.0%
ATTAGCATTAGGTCCACTTG+AGG - chr1_4:71588136-71588155 None:intergenic 40.0%
! AGGTCTAGAGGATTAGCATT+AGG - chr1_4:71588147-71588166 None:intergenic 40.0%
TAAAACAGCGACTGTTACCT+GGG - chr1_4:71588175-71588194 None:intergenic 40.0%
ATAAAACAGCGACTGTTACC+TGG - chr1_4:71588176-71588195 None:intergenic 40.0%
GCTTGGAACTGGAATGAAAA+TGG - chr1_4:71588408-71588427 None:intergenic 40.0%
GGCAAATCCACAAATATTGC+AGG + chr1_4:71588446-71588465 Msa0182750:CDS 40.0%
CTGCAGCAATAACAAGAATC+AGG - chr1_4:71588522-71588541 None:intergenic 40.0%
CTGATTAACGAACCTATGGA+GGG + chr1_4:71588620-71588639 Msa0182750:CDS 40.0%
CAAAAAGTAAGCCAATGGAC+AGG - chr1_4:71588750-71588769 None:intergenic 40.0%
!!! CTGTCCATTGGCTTACTTTT+TGG + chr1_4:71588748-71588767 Msa0182750:intron 40.0%
TAATTGACCCTGGTGTTTCT+AGG - chr1_4:71589189-71589208 None:intergenic 40.0%
GCTTCAAGCTGCAATAAGAA+AGG - chr1_4:71589254-71589273 None:intergenic 40.0%
CTTATTGCAGCTTGAAGCAA+TGG + chr1_4:71589256-71589275 Msa0182750:intron 40.0%
! TGATCGTGCTATAGTATTGG+AGG + chr1_4:71589283-71589302 Msa0182750:CDS 40.0%
CATGTGGTCTAAAAGGTAGT+TGG - chr1_4:71589345-71589364 None:intergenic 40.0%
ACTCATGCATGTGGTCTAAA+AGG - chr1_4:71589352-71589371 None:intergenic 40.0%
! TTCGTTATCTTTTCTCTCGG+TGG + chr1_4:71589415-71589434 Msa0182750:three_prime_UTR 40.0%
!! ACAATCTCTCAAGTTGACTG+TGG + chr1_4:71589489-71589508 Msa0182750:three_prime_UTR 40.0%
GGAAATGAGAAGGTCATGTA+AGG - chr1_4:71589547-71589566 None:intergenic 40.0%
TGATCTTCACGCGTTACTTG+CGG - chr1_4:71585435-71585454 None:intergenic 45.0%
TTCGAAGACCAAAACGACGA+CGG - chr1_4:71585568-71585587 None:intergenic 45.0%
TGATACCGGCCTTACAACTT+AGG + chr1_4:71586328-71586347 Msa0182750:intron 45.0%
GATACCGGCCTTACAACTTA+GGG + chr1_4:71586329-71586348 Msa0182750:intron 45.0%
AATTTGCAGTGTGCAAAGCG+AGG - chr1_4:71586379-71586398 None:intergenic 45.0%
GCTTTGCACACTGCAAATTG+TGG + chr1_4:71586380-71586399 Msa0182750:intron 45.0%
!! ATAAGCATTTGCTGTGCAGC+AGG - chr1_4:71586570-71586589 None:intergenic 45.0%
TTTGAAGGATGGTACCACCT+TGG + chr1_4:71586605-71586624 Msa0182750:CDS 45.0%
!!! AGTTTTGGTTGGTTGGTGTG+TGG + chr1_4:71586818-71586837 Msa0182750:intron 45.0%
TCTCACATGCCAATTTGGAG+TGG + chr1_4:71586843-71586862 Msa0182750:intron 45.0%
CACAGACCCTTAAGATAGCT+GGG - chr1_4:71586897-71586916 None:intergenic 45.0%
TTGAGGTGAAACAGACACTG+GGG - chr1_4:71587289-71587308 None:intergenic 45.0%
CTTGAGGTGAAACAGACACT+GGG - chr1_4:71587290-71587309 None:intergenic 45.0%
TATTTACGTAGCAGTTGCCG+AGG - chr1_4:71587502-71587521 None:intergenic 45.0%
! AGGGAAGGTTCTGATGTCTA+TGG + chr1_4:71587653-71587672 Msa0182750:intron 45.0%
! GGGAAGGTTCTGATGTCTAT+GGG + chr1_4:71587654-71587673 Msa0182750:intron 45.0%
CAAATCCTAGATATGGGAGG+AGG + chr1_4:71587728-71587747 Msa0182750:CDS 45.0%
TGCCTTCAATAACCCTGAGA+GGG + chr1_4:71587790-71587809 Msa0182750:CDS 45.0%
AATATTCAACCGCCCTCTCA+GGG - chr1_4:71587805-71587824 None:intergenic 45.0%
AAATATTCAACCGCCCTCTC+AGG - chr1_4:71587806-71587825 None:intergenic 45.0%
TTAGGTCCACTTGAGGTAAC+AGG - chr1_4:71588129-71588148 None:intergenic 45.0%
AAAACAGCGACTGTTACCTG+GGG - chr1_4:71588174-71588193 None:intergenic 45.0%
TTACAGGGCCTGCCAAATAT+TGG + chr1_4:71588245-71588264 Msa0182750:intron 45.0%
GCGTAGAAAATCCAGAGAAC+CGG - chr1_4:71588288-71588307 None:intergenic 45.0%
TTCAGTGCAAATGCAGCACA+GGG - chr1_4:71588338-71588357 None:intergenic 45.0%
ATTCAGTGCAAATGCAGCAC+AGG - chr1_4:71588339-71588358 None:intergenic 45.0%
TTGCCAAGCTCTTGTAGCAT+GGG - chr1_4:71588545-71588564 None:intergenic 45.0%
TTTGCCAAGCTCTTGTAGCA+TGG - chr1_4:71588546-71588565 None:intergenic 45.0%
!! GAGATTGATTCGGGATCATC+AGG + chr1_4:71588583-71588602 Msa0182750:CDS 45.0%
TAGGTTCGTTAATCAGGCGA+AGG - chr1_4:71588616-71588635 None:intergenic 45.0%
TCGCCTGATTAACGAACCTA+TGG + chr1_4:71588616-71588635 Msa0182750:CDS 45.0%
CCTCCATAGGTTCGTTAATC+AGG - chr1_4:71588622-71588641 None:intergenic 45.0%
CCTGATTAACGAACCTATGG+AGG + chr1_4:71588619-71588638 Msa0182750:CDS 45.0%
ATTAACGAACCTATGGAGGG+CGG + chr1_4:71588623-71588642 Msa0182750:CDS 45.0%
GAACAACCTATTGGGACAGA+TGG + chr1_4:71588788-71588807 Msa0182750:CDS 45.0%
! GGTGTGACAGTTACTGATTG+TGG - chr1_4:71588825-71588844 None:intergenic 45.0%
AGAGAAAGGCTAATTGACCC+TGG - chr1_4:71589199-71589218 None:intergenic 45.0%
GTGGTCTAAAAGGTAGTTGG+CGG - chr1_4:71589342-71589361 None:intergenic 45.0%
!! TCTCAAGTTGACTGTGGACA+AGG + chr1_4:71589495-71589514 Msa0182750:three_prime_UTR 45.0%
!! CTCAAGTTGACTGTGGACAA+GGG + chr1_4:71589496-71589515 Msa0182750:three_prime_UTR 45.0%
ATGAGAAGGTCATGTAAGGG+CGG - chr1_4:71589543-71589562 None:intergenic 45.0%
TATATGAAGGAGCCCTCGAT+GGG - chr1_4:71589572-71589591 None:intergenic 45.0%
!! ATTAAATAATAACTTATTTA+TGG - chr1_4:71586295-71586314 None:intergenic 5.0%
!! ATAAATAAGTTATTATTTAA+TGG + chr1_4:71586294-71586313 Msa0182750:intron 5.0%
!! TTAAAAATATTCATAAATTT+AGG + chr1_4:71587996-71588015 Msa0182750:intron 5.0%
!! TAAAAATATTCATAAATTTA+GGG + chr1_4:71587997-71588016 Msa0182750:intron 5.0%
GATCTTCACGCGTTACTTGC+GGG - chr1_4:71585434-71585453 None:intergenic 50.0%
TTTGCGGCGATCGAAGATGA+AGG + chr1_4:71585616-71585635 Msa0182750:exon 50.0%
TGAGGGAAAACCGAGTCTTG+TGG - chr1_4:71585689-71585708 None:intergenic 50.0%
CACTGACACACGTCAAACAC+CGG + chr1_4:71586153-71586172 Msa0182750:intron 50.0%
! TCAAAGGTGTGTCCTGTGTC+CGG - chr1_4:71586175-71586194 None:intergenic 50.0%
CCACAGACCCTTAAGATAGC+TGG - chr1_4:71586898-71586917 None:intergenic 50.0%
CCAGCTATCTTAAGGGTCTG+TGG + chr1_4:71586895-71586914 Msa0182750:intron 50.0%
TTCAAATGCTCCTCCAGCGA+AGG + chr1_4:71587089-71587108 Msa0182750:CDS 50.0%
CAAACTTCTCTCACCTTCGC+TGG - chr1_4:71587105-71587124 None:intergenic 50.0%
TAGGAGCAGCACTTGTCTGT+GGG - chr1_4:71587257-71587276 None:intergenic 50.0%
TGAGGTGAAACAGACACTGG+GGG - chr1_4:71587288-71587307 None:intergenic 50.0%
GCTTGAGGTGAAACAGACAC+TGG - chr1_4:71587291-71587310 None:intergenic 50.0%
AGCTCCTGCTCCTATATCCT+CGG + chr1_4:71587482-71587501 Msa0182750:CDS 50.0%
GTAGCAGTTGCCGAGGATAT+AGG - chr1_4:71587495-71587514 None:intergenic 50.0%
! AGGTTCTGATGTCTATGGGC+AGG + chr1_4:71587658-71587677 Msa0182750:CDS 50.0%
GCTGCATCTAATCTGGTTGC+CGG + chr1_4:71587680-71587699 Msa0182750:CDS 50.0%
TGTTCCCTCCAAGTTGCTAC+CGG - chr1_4:71587702-71587721 None:intergenic 50.0%
AGCTTCCTCCTCCCATATCT+AGG - chr1_4:71587736-71587755 None:intergenic 50.0%
TAGATATGGGAGGAGGAAGC+TGG + chr1_4:71587735-71587754 Msa0182750:CDS 50.0%
AGATATGGGAGGAGGAAGCT+GGG + chr1_4:71587736-71587755 Msa0182750:CDS 50.0%
CTGCCTTCAATAACCCTGAG+AGG + chr1_4:71587789-71587808 Msa0182750:CDS 50.0%
CTTCAATAACCCTGAGAGGG+CGG + chr1_4:71587793-71587812 Msa0182750:CDS 50.0%
! TGCTGGAGCTTCAGCTTGTT+CGG - chr1_4:71588028-71588047 None:intergenic 50.0%
TTCACAGGTTGTGCACTTGC+AGG - chr1_4:71588063-71588082 None:intergenic 50.0%
TGCACAACCTGTGAATCCTG+AGG + chr1_4:71588068-71588087 Msa0182750:CDS 50.0%
CACCAGCACCAATATTTGGC+AGG - chr1_4:71588256-71588275 None:intergenic 50.0%
GCAGCACCAGCACCAATATT+TGG - chr1_4:71588260-71588279 None:intergenic 50.0%
!! AATATTGGTGCTGGTGCTGC+TGG + chr1_4:71588260-71588279 Msa0182750:CDS 50.0%
TAGCTCGCAATGCTTGGAAC+TGG - chr1_4:71588419-71588438 None:intergenic 50.0%
! GTTCCAAGCATTGCGAGCTA+TGG + chr1_4:71588419-71588438 Msa0182750:intron 50.0%
ATCAGTAACTGTCACACCCG+AGG + chr1_4:71588827-71588846 Msa0182750:CDS 50.0%
TTCAATAGCTTGGCGCTCCT+CGG - chr1_4:71588847-71588866 None:intergenic 50.0%
GTTCGTCGAACTCATGCATG+TGG - chr1_4:71589361-71589380 None:intergenic 50.0%
ATGTAAGGGCGGCAATGAGA+AGG - chr1_4:71589532-71589551 None:intergenic 50.0%
TCGATGGGGAGGAAATGAGA+AGG - chr1_4:71589557-71589576 None:intergenic 50.0%
TTCTCATTTCCTCCCCATCG+AGG + chr1_4:71589556-71589575 Msa0182750:three_prime_UTR 50.0%
TCTCATTTCCTCCCCATCGA+GGG + chr1_4:71589557-71589576 Msa0182750:three_prime_UTR 50.0%
ATATGAAGGAGCCCTCGATG+GGG - chr1_4:71589571-71589590 None:intergenic 50.0%
GTATATGAAGGAGCCCTCGA+TGG - chr1_4:71589573-71589592 None:intergenic 50.0%
TCACGCGTTACTTGCGGGAT+TGG - chr1_4:71585429-71585448 None:intergenic 55.0%
CGAAGTCACGCCACAAGACT+CGG + chr1_4:71585676-71585695 Msa0182750:CDS 55.0%
ACACGTCAAACACCGGACAC+AGG + chr1_4:71586160-71586179 Msa0182750:intron 55.0%
GCAGCCCTAAGTTGTAAGGC+CGG - chr1_4:71586336-71586355 None:intergenic 55.0%
AGGCGCAGCCCTAAGTTGTA+AGG - chr1_4:71586340-71586359 None:intergenic 55.0%
GAAGGATGGTACCACCTTGG+AGG + chr1_4:71586608-71586627 Msa0182750:CDS 55.0%
AGTAGACCCTTCACCAGACG+CGG - chr1_4:71587067-71587086 None:intergenic 55.0%
ACTTCTCTCACCTTCGCTGG+AGG - chr1_4:71587102-71587121 None:intergenic 55.0%
AGGAGCAGCACTTGTCTGTG+GGG - chr1_4:71587256-71587275 None:intergenic 55.0%
GTAGGAGCAGCACTTGTCTG+TGG - chr1_4:71587258-71587277 None:intergenic 55.0%
AGGTGAAACAGACACTGGGG+GGG - chr1_4:71587286-71587305 None:intergenic 55.0%
GAGGTGAAACAGACACTGGG+GGG - chr1_4:71587287-71587306 None:intergenic 55.0%
TCAAGCTCCTGCTGCAACTG+CGG + chr1_4:71587305-71587324 Msa0182750:CDS 55.0%
! GAAGGTGCAGCAACAGATGC+AGG - chr1_4:71587453-71587472 None:intergenic 55.0%
GAGGATATAGGAGCAGGAGC+TGG - chr1_4:71587483-71587502 None:intergenic 55.0%
GTTGCCGAGGATATAGGAGC+AGG - chr1_4:71587489-71587508 None:intergenic 55.0%
TGGGCAGGCTGCATCTAATC+TGG + chr1_4:71587673-71587692 Msa0182750:CDS 55.0%
TCTGGTTGCCGGTAGCAACT+TGG + chr1_4:71587691-71587710 Msa0182750:CDS 55.0%
GTTGCCGGTAGCAACTTGGA+GGG + chr1_4:71587695-71587714 Msa0182750:CDS 55.0%
CGCCCTCTCAGGGTTATTGA+AGG - chr1_4:71587795-71587814 None:intergenic 55.0%
! GCTGGAGCTTCAGCTTGTTC+GGG - chr1_4:71588027-71588046 None:intergenic 55.0%
CCACTTGAGGTAACAGGAGC+AGG - chr1_4:71588123-71588142 None:intergenic 55.0%
CCTGCTCCTGTTACCTCAAG+TGG + chr1_4:71588120-71588139 Msa0182750:CDS 55.0%
TCCTCTAGACCTCTTTCCCC+AGG + chr1_4:71588155-71588174 Msa0182750:CDS 55.0%
ACCTGGGGAAAGAGGTCTAG+AGG - chr1_4:71588159-71588178 None:intergenic 55.0%
CGACTGTTACCTGGGGAAAG+AGG - chr1_4:71588167-71588186 None:intergenic 55.0%
GGCCTGCCAAATATTGGTGC+TGG + chr1_4:71588251-71588270 Msa0182750:CDS 55.0%
GCACCATAGCTCGCAATGCT+TGG - chr1_4:71588425-71588444 None:intergenic 55.0%
AGCATTGCGAGCTATGGTGC+AGG + chr1_4:71588425-71588444 Msa0182750:CDS 55.0%
CAGCCCATGCTACAAGAGCT+TGG + chr1_4:71588539-71588558 Msa0182750:intron 55.0%
AACCTATGGAGGGCGGAGAA+GGG + chr1_4:71588630-71588649 Msa0182750:CDS 55.0%
CAGCAGCCATCTGTCCCAAT+AGG - chr1_4:71588797-71588816 None:intergenic 55.0%
CTATTGGGACAGATGGCTGC+TGG + chr1_4:71588795-71588814 Msa0182750:CDS 55.0%
TCAATAGCTTGGCGCTCCTC+GGG - chr1_4:71588846-71588865 None:intergenic 55.0%
AGTAAGCCCGCGTCTGGTGA+AGG + chr1_4:71587057-71587076 Msa0182750:CDS 60.0%
GTAAGCCCGCGTCTGGTGAA+GGG + chr1_4:71587058-71587077 Msa0182750:CDS 60.0%
GTAGACCCTTCACCAGACGC+GGG - chr1_4:71587066-71587085 None:intergenic 60.0%
GACACTGGGGGGGTTGAAGT+AGG - chr1_4:71587276-71587295 None:intergenic 60.0%
GCAGTTGCAGCAGGAGCTTG+AGG - chr1_4:71587306-71587325 None:intergenic 60.0%
TAGGAGCAGGAGCTGGAGCT+GGG - chr1_4:71587476-71587495 None:intergenic 60.0%
ATAGGAGCAGGAGCTGGAGC+TGG - chr1_4:71587477-71587496 None:intergenic 60.0%
GGTTGCCGGTAGCAACTTGG+AGG + chr1_4:71587694-71587713 Msa0182750:CDS 60.0%
TGGGAGGAGGAAGCTGGGAT+AGG + chr1_4:71587741-71587760 Msa0182750:CDS 60.0%
GGGAGGAGGAAGCTGGGATA+GGG + chr1_4:71587742-71587761 Msa0182750:CDS 60.0%
TTGTGCACTTGCAGGCGCTC+GGG - chr1_4:71588055-71588074 None:intergenic 60.0%
GTTGTGCACTTGCAGGCGCT+CGG - chr1_4:71588056-71588075 None:intergenic 60.0%
GCTGCAGCCTCAGGATTCAC+AGG - chr1_4:71588078-71588097 None:intergenic 60.0%
GAACCTATGGAGGGCGGAGA+AGG + chr1_4:71588629-71588648 Msa0182750:CDS 60.0%
TGGCAGAGTAAGCCCGCGTC+TGG + chr1_4:71587051-71587070 Msa0182750:intron 65.0%
AGGAGCAGGAGCTGGAGCTG+GGG - chr1_4:71587475-71587494 None:intergenic 65.0%
GGAGCAGGCTGAGCTGCTTG+TGG - chr1_4:71588108-71588127 None:intergenic 65.0%
!! TGCTGCTGGTGCCGGTTCTC+TGG + chr1_4:71588274-71588293 Msa0182750:CDS 65.0%
CACCCTTCTCCGCCCTCCAT+AGG - chr1_4:71588635-71588654 None:intergenic 65.0%
TGAAGGAGCCCTCGATGGGG+AGG - chr1_4:71589568-71589587 None:intergenic 65.0%
!! CACGGTGCCGCAGTTGCAGC+AGG - chr1_4:71587315-71587334 None:intergenic 70.0%
GCAGGAGCTGGAGCTGGGGA+AGG - chr1_4:71587471-71587490 None:intergenic 70.0%
GGAGCTGCAGCTGCAGCCTC+AGG - chr1_4:71588087-71588106 None:intergenic 70.0%
!! GGTGCTGGTGCTGCTGGTGC+CGG + chr1_4:71588266-71588285 Msa0182750:CDS 70.0%
GCAGGCGCTCGGGACACTGC+TGG - chr1_4:71588045-71588064 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71585417 71589676 71585417 ID=Msa0182750;Name=Msa0182750
chr1_4 mRNA 71585417 71589676 71585417 ID=Msa0182750-mRNA-1;Parent=Msa0182750;Name=Msa0182750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=215|1|1|1|1|1|12|291|397
chr1_4 exon 71585417 71585697 71585417 ID=Msa0182750-mRNA-1:exon:23940;Parent=Msa0182750-mRNA-1
chr1_4 exon 71586516 71586677 71586516 ID=Msa0182750-mRNA-1:exon:23941;Parent=Msa0182750-mRNA-1
chr1_4 exon 71587057 71587110 71587057 ID=Msa0182750-mRNA-1:exon:23942;Parent=Msa0182750-mRNA-1
chr1_4 exon 71587252 71587331 71587252 ID=Msa0182750-mRNA-1:exon:23943;Parent=Msa0182750-mRNA-1
chr1_4 exon 71587449 71587514 71587449 ID=Msa0182750-mRNA-1:exon:23944;Parent=Msa0182750-mRNA-1
chr1_4 exon 71587655 71587832 71587655 ID=Msa0182750-mRNA-1:exon:23945;Parent=Msa0182750-mRNA-1
chr1_4 exon 71588018 71588176 71588018 ID=Msa0182750-mRNA-1:exon:23946;Parent=Msa0182750-mRNA-1
chr1_4 exon 71588251 71588319 71588251 ID=Msa0182750-mRNA-1:exon:23947;Parent=Msa0182750-mRNA-1
chr1_4 exon 71588420 71588467 71588420 ID=Msa0182750-mRNA-1:exon:23948;Parent=Msa0182750-mRNA-1
chr1_4 exon 71588542 71588651 71588542 ID=Msa0182750-mRNA-1:exon:23949;Parent=Msa0182750-mRNA-1
chr1_4 exon 71588788 71588869 71588788 ID=Msa0182750-mRNA-1:exon:23950;Parent=Msa0182750-mRNA-1
chr1_4 exon 71589266 71589676 71589266 ID=Msa0182750-mRNA-1:exon:23951;Parent=Msa0182750-mRNA-1
chr1_4 five_prime_UTR 71585417 71585631 71585417 ID=Msa0182750-mRNA-1:five_prime_utr;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71585632 71585697 71585632 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71586516 71586677 71586516 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71587057 71587110 71587057 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71587252 71587331 71587252 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71587449 71587514 71587449 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71587655 71587832 71587655 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71588018 71588176 71588018 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71588251 71588319 71588251 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71588420 71588467 71588420 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71588542 71588651 71588542 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71588788 71588869 71588788 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 CDS 71589266 71589385 71589266 ID=Msa0182750-mRNA-1:cds;Parent=Msa0182750-mRNA-1
chr1_4 three_prime_UTR 71589386 71589676 71589386 ID=Msa0182750-mRNA-1:three_prime_utr;Parent=Msa0182750-mRNA-1
Gene Sequence

>Msa0182750

ATGAAGGTTTTCGTCAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAAGACTCGATTTCCGCAGTCAAGAAAAATATAGAAACCGTTCAAGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGTACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATCATGCTTTCAAAGAGTAAGCCCGCGTCTGGTGAAGGGTCTACTACTTCAAATGCTCCTCCAGCGAAGGCCCCACAGACAAGTGCTGCTCCTACTTCAACCCCCCCAGTGTCTGTTTCACCTCAAGCTCCTGCTGCAACTGCGGCACCGCCTGCATCTGTTGCTGCACCTTCCCCAGCTCCAGCTCCTGCTCCTATATCCTCGGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCTGCATCTAATCTGGTTGCCGGTAGCAACTTGGAGGGAACAGTTCAACAAATCCTAGATATGGGAGGAGGAAGCTGGGATAGGGATACTGTAATTCGTGCTCTTCGAGCTGCCTTCAATAACCCTGAGAGGGCGGTTGAATATTTGTATTCAGGTATACCCGAACAAGCTGAAGCTCCAGCAGTGTCCCGAGCGCCTGCAAGTGCACAACCTGTGAATCCTGAGGCTGCAGCTGCAGCTCCACAAGCAGCTCAGCCTGCTCCTGTTACCTCAAGTGGACCTAATGCTAATCCTCTAGACCTCTTTCCCCAGGGCCTGCCAAATATTGGTGCTGGTGCTGCTGGTGCCGGTTCTCTGGATTTTCTACGCAATAGTCAACAATTCCAAGCATTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGGGATCATCAGGCTGACTTCCTTCGCCTGATTAACGAACCTATGGAGGGCGGAGAAGGGAACAACCTATTGGGACAGATGGCTGCTGGCATGCCACAATCAGTAACTGTCACACCCGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTTCTTTGCTTGCAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTCGACGAACAATGA

Protein sequence

>Msa0182750

MKVFVKTLKGTHFEIEVTPQDSISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPASGEGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVSRAPASAQPVNPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNNLLGQMAAGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ*