AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060970 MtrunA17_Chr1g0160811 97.093 172 5 0 1 172 1 172 5.38e-121 338
Msa0060970 MtrunA17_Chr4g0043861 65.644 163 55 1 4 166 3 164 3.75e-76 225
Msa0060970 MtrunA17_Chr3g0111361 62.346 162 60 1 4 165 3 163 7.17e-74 219
Msa0060970 MtrunA17_Chr2g0280981 58.537 164 67 1 4 167 2 164 4.46e-70 209
Msa0060970 MtrunA17_Chr8g0393081 58.537 164 67 1 4 167 19 181 1.03e-69 209
Msa0060970 MtrunA17_Chr6g0478401 55.488 164 72 1 4 167 15 177 9.72e-65 196
Msa0060970 MtrunA17_Chr8g0352751 43.226 155 86 2 6 159 5 158 3.36e-40 133
Msa0060970 MtrunA17_Chr8g0380381 44.937 158 85 2 5 161 88 244 7.30e-39 132
Msa0060970 MtrunA17_Chr3g0083541 42.949 156 87 2 5 159 242 396 2.98e-34 124
Msa0060970 MtrunA17_Chr2g0292461 42.405 158 89 2 5 161 171 327 4.02e-34 122
Msa0060970 MtrunA17_Chr2g0290631 42.282 149 83 2 6 152 5 152 1.17e-30 109
Msa0060970 MtrunA17_Chr2g0290721 34.118 85 54 2 9 92 3 86 1.23e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060970 AT1G70790.3 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0060970 AT1G70790.2 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0060970 AT1G70790.1 66.864 169 53 2 1 167 1 168 2.50e-80 236
Msa0060970 AT2G01540.1 60.355 169 64 2 1 167 1 168 6.78e-72 214
Msa0060970 AT1G70810.1 60.736 163 63 1 5 167 4 165 4.15e-70 209
Msa0060970 AT3G17980.1 56.364 165 71 1 3 167 14 177 1.69e-68 206
Msa0060970 AT1G48590.4 56.970 165 69 2 3 167 7 169 5.32e-67 202
Msa0060970 AT1G48590.1 56.970 165 69 2 3 167 7 169 5.32e-67 202
Msa0060970 AT1G48590.2 56.970 165 69 2 3 167 38 200 6.59e-67 202
Msa0060970 AT1G73580.1 54.545 165 74 1 3 167 5 168 4.74e-66 199
Msa0060970 AT1G23140.1 56.707 164 70 1 4 167 3 165 4.45e-64 194
Msa0060970 AT1G70790.4 70.769 130 36 1 40 167 2 131 1.68e-63 192
Msa0060970 AT1G66360.1 53.374 163 73 2 4 164 3 164 2.70e-62 190
Msa0060970 AT5G37740.1 51.497 167 77 2 4 167 3 168 5.22e-62 189
Msa0060970 AT1G70800.1 53.374 163 75 1 5 167 13 174 9.31e-61 186
Msa0060970 AT5G37740.2 48.295 176 79 2 4 167 3 178 2.57e-59 182
Msa0060970 AT1G48590.3 44.848 165 57 2 3 167 38 168 1.73e-46 150
Msa0060970 AT4G05330.2 47.436 156 80 2 5 159 143 297 5.81e-39 134
Msa0060970 AT4G21160.2 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0060970 AT4G21160.3 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0060970 AT4G21160.1 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0060970 AT4G21160.4 48.077 156 79 2 5 159 179 333 1.84e-38 134
Msa0060970 AT4G05330.3 47.436 156 80 2 5 159 178 332 2.59e-38 134
Msa0060970 AT4G05330.1 47.436 156 80 2 5 159 178 332 2.59e-38 134
Msa0060970 AT5G47710.1 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0060970 AT5G47710.2 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0060970 AT5G47710.3 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0060970 AT5G47710.4 40.625 160 92 2 6 163 5 163 3.40e-35 121
Msa0060970 AT3G07940.1 42.208 154 87 2 5 157 227 379 3.85e-35 126

Find 59 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACTTTATATAATAATTT+AGG 0.187365 1_2:+18939846 None:intergenic
CCAGGTTGCAAAGGTCTATT+AGG 0.188697 1_2:-18939970 Msa0060970:CDS
ATCCGTTTGGCAAGTCATTT+TGG 0.197413 1_2:-18941800 Msa0060970:five_prime_UTR
CTGAAGAGAGCAGTTGTATT+TGG 0.198293 1_2:-18940083 Msa0060970:CDS
TTTCTCCGTCGACGACAAAA+TGG 0.198849 1_2:-18940220 Msa0060970:CDS
GGATTTGATTATGAAGTTTA+AGG 0.225701 1_2:+18941819 None:intergenic
AAGAATTAACCCTTTCAATA+AGG 0.243737 1_2:-18940594 Msa0060970:CDS
TGAAGTTTAAGGAGCTTCTT+TGG 0.258075 1_2:+18941830 None:intergenic
TCAATCTTAGAATCATTTCT+TGG 0.308077 1_2:+18940043 None:intergenic
ATTTGTACACATTGAGCATA+TGG 0.352534 1_2:+18940174 None:intergenic
AGAATTAACCCTTTCAATAA+GGG 0.363219 1_2:-18940593 Msa0060970:CDS
TTGCGATCTAGCAACTTTGT+AGG 0.368798 1_2:-18942079 Msa0060970:five_prime_UTR
GAAGTTTAAGGAGCTTCTTT+GGG 0.377034 1_2:+18941831 None:intergenic
ATTGAGTGGGTGGATGTTCC+AGG 0.378200 1_2:-18939988 Msa0060970:CDS
GGCATGGATAATAATGTTCT+TGG 0.394699 1_2:-18941776 Msa0060970:CDS
CTCTTGATTGCACAACCATT+TGG 0.400401 1_2:+18940135 None:intergenic
TCAAGAGGGTTCAAGCAAAT+AGG 0.403301 1_2:-18940119 Msa0060970:CDS
ACTTCATAATCAAATCCGTT+TGG 0.419897 1_2:-18941813 Msa0060970:five_prime_UTR
TTCTCCGTCGACGACAAAAT+GGG 0.428457 1_2:-18940219 Msa0060970:CDS
CTAAAACTTCGTATTAAAAG+AGG 0.428755 1_2:-18941749 Msa0060970:CDS
TGTCAACATTGGTCATGAAC+AGG 0.430334 1_2:-18941678 Msa0060970:intron
AAATGTTGAGAGTGGAGAAT+TGG 0.430897 1_2:-18940019 Msa0060970:CDS
CCAATGTTGACAACAACATA+AGG 0.434516 1_2:+18941689 None:intergenic
CAGGTTGCAAAGGTCTATTA+GGG 0.446108 1_2:-18939969 Msa0060970:CDS
AAATGTGATGTAATATATAG+TGG 0.446651 1_2:-18939784 Msa0060970:three_prime_UTR
CTCTTACATCCCTTATTGAA+AGG 0.451223 1_2:+18940584 None:intergenic
TAGTCATTTGATTCATGCAT+TGG 0.459891 1_2:+18939882 None:intergenic
TGCGATCTAGCAACTTTGTA+GGG 0.468752 1_2:-18942078 Msa0060970:five_prime_UTR
TTGATTCATGCATTGGACCT+TGG 0.481199 1_2:+18939889 None:intergenic
ATCTTAGAATCATTTCTTGG+AGG 0.484585 1_2:+18940046 None:intergenic
CCTAATAGACCTTTGCAACC+TGG 0.491322 1_2:+18939970 None:intergenic
TCTTACATCCCTTATTGAAA+GGG 0.497303 1_2:+18940585 None:intergenic
CTCCAAAATGACTTGCCAAA+CGG 0.499213 1_2:+18941798 None:intergenic
TGTAAGAGTTCCAATACGTC+TGG 0.504818 1_2:-18940569 Msa0060970:intron
GTTAATTCTTCATTCCACTC+AGG 0.513309 1_2:+18940607 None:intergenic
AAGTTGGATACTCTTCCAAA+TGG 0.514104 1_2:-18940150 Msa0060970:CDS
TTAATTCTTCATTCCACTCA+GGG 0.514723 1_2:+18940608 None:intergenic
CCTTATGTTGTTGTCAACAT+TGG 0.522538 1_2:-18941689 Msa0060970:CDS
CAATGTTGACAACAACATAA+GGG 0.538879 1_2:+18941690 None:intergenic
AGATTGAGAAATGTTGAGAG+TGG 0.545029 1_2:-18940027 Msa0060970:CDS
TGAGAGTGGAGAATTGGTTG+TGG 0.553380 1_2:-18940013 Msa0060970:CDS
GTGGATGTTCCAGGTTGCAA+AGG 0.560781 1_2:-18939979 Msa0060970:CDS
GACAACAACATAAGGGTCGC+TGG 0.561798 1_2:+18941697 None:intergenic
CAAATGGTTGTGCAATCAAG+AGG 0.565429 1_2:-18940134 Msa0060970:CDS
AAGTTTAAGGAGCTTCTTTG+GGG 0.573694 1_2:+18941832 None:intergenic
TCTAGCAACTTTGTAGGGAT+AGG 0.576005 1_2:-18942073 Msa0060970:five_prime_UTR
TCAATGTGTACAAATGAAGT+TGG 0.578075 1_2:-18940166 Msa0060970:CDS
AAGTCTTATTGTAATATCCA+AGG 0.599466 1_2:-18939906 Msa0060970:three_prime_UTR
AAAACAATTGCAACCCTGAG+TGG 0.600340 1_2:-18940621 Msa0060970:CDS
AATTGGTTGTGGAAATTGAG+TGG 0.610176 1_2:-18940002 Msa0060970:CDS
GGTTGTGGAAATTGAGTGGG+TGG 0.614075 1_2:-18939998 Msa0060970:CDS
ATTGGTTGTGGAAATTGAGT+GGG 0.621207 1_2:-18940001 Msa0060970:CDS
AAATGGTTGTGCAATCAAGA+GGG 0.626231 1_2:-18940133 Msa0060970:CDS
TGCCAAAACAAAATTGAGGT+CGG 0.639420 1_2:-18942000 Msa0060970:five_prime_UTR
TACCTGCCAAAACAAAATTG+AGG 0.651981 1_2:-18942004 Msa0060970:five_prime_UTR
TACAACTGCTCTCTTCAGCA+AGG 0.655573 1_2:+18940088 None:intergenic
CAACTTTGTAGGGATAGGAG+AGG 0.686770 1_2:-18942068 Msa0060970:five_prime_UTR
AGGTTGCAAAGGTCTATTAG+GGG 0.692342 1_2:-18939968 Msa0060970:CDS
AGTTTAAGGAGCTTCTTTGG+GGG 0.694941 1_2:+18941833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAATTTTACG+AGG - chr1_2:18940750-18940769 Msa0060970:intron 10.0%
!!! TTTTAAGTTAAAATCAATTA+CGG - chr1_2:18941015-18941034 Msa0060970:intron 10.0%
!! TGAGAAATTATTATTAATAA+CGG - chr1_2:18941394-18941413 Msa0060970:intron 10.0%
!! ACAACTTTATATAATAATTT+AGG + chr1_2:18941955-18941974 None:intergenic 10.0%
!!! AAAAAAAAAAAAATTTTACG+AGG - chr1_2:18940750-18940769 Msa0060970:intron 10.0%
!!! TTTTAAGTTAAAATCAATTA+CGG - chr1_2:18941015-18941034 Msa0060970:intron 10.0%
!! TGAGAAATTATTATTAATAA+CGG - chr1_2:18941394-18941413 Msa0060970:intron 10.0%
!! ACAACTTTATATAATAATTT+AGG + chr1_2:18941955-18941974 None:intergenic 10.0%
!!! ATTATGTTATTTTAATGCTT+TGG + chr1_2:18939870-18939889 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAGACTC+AGG + chr1_2:18940743-18940762 None:intergenic 15.0%
!! CAATTCATATGTATAAAAAA+GGG + chr1_2:18940824-18940843 None:intergenic 15.0%
!! ACAATTCATATGTATAAAAA+AGG + chr1_2:18940825-18940844 None:intergenic 15.0%
!!! ATTATGTTATTTTAATGCTT+TGG + chr1_2:18939870-18939889 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAGACTC+AGG + chr1_2:18940743-18940762 None:intergenic 15.0%
!! CAATTCATATGTATAAAAAA+GGG + chr1_2:18940824-18940843 None:intergenic 15.0%
!! ACAATTCATATGTATAAAAA+AGG + chr1_2:18940825-18940844 None:intergenic 15.0%
!!! AATTCTTTTGACAAAATTAC+CGG + chr1_2:18940294-18940313 None:intergenic 20.0%
!! GTTATGCAAAATTATGTTAT+TGG - chr1_2:18940410-18940429 Msa0060970:intron 20.0%
!!! ATACTATGAATTGATTTTAC+AGG - chr1_2:18940671-18940690 Msa0060970:intron 20.0%
!!! TGTGTTTTATAATTGAAGTT+TGG - chr1_2:18940844-18940863 Msa0060970:intron 20.0%
!! TAAACTGAACAATAAATTTG+AGG - chr1_2:18940948-18940967 Msa0060970:intron 20.0%
!! AAATGTGATGTAATATATAG+TGG - chr1_2:18942014-18942033 Msa0060970:five_prime_UTR 20.0%
!!! AATTCTTTTGACAAAATTAC+CGG + chr1_2:18940294-18940313 None:intergenic 20.0%
!! GTTATGCAAAATTATGTTAT+TGG - chr1_2:18940410-18940429 Msa0060970:intron 20.0%
!!! ATACTATGAATTGATTTTAC+AGG - chr1_2:18940671-18940690 Msa0060970:intron 20.0%
!!! TGTGTTTTATAATTGAAGTT+TGG - chr1_2:18940844-18940863 Msa0060970:intron 20.0%
!! TAAACTGAACAATAAATTTG+AGG - chr1_2:18940948-18940967 Msa0060970:intron 20.0%
!! AAATGTGATGTAATATATAG+TGG - chr1_2:18942014-18942033 Msa0060970:five_prime_UTR 20.0%
! GGATTTGATTATGAAGTTTA+AGG + chr1_2:18939982-18940001 None:intergenic 25.0%
! CTAAAACTTCGTATTAAAAG+AGG - chr1_2:18940049-18940068 Msa0060970:CDS 25.0%
!! ATTCTTTTGACAAAATTACC+GGG + chr1_2:18940293-18940312 None:intergenic 25.0%
! ATCTGTATTGAATTTACTCT+TGG + chr1_2:18940519-18940538 None:intergenic 25.0%
!! AATTTACAACCTTTCGTTTT+TGG + chr1_2:18940719-18940738 None:intergenic 25.0%
!! TTTGCAAATATCAAGAGTTT+TGG + chr1_2:18940783-18940802 None:intergenic 25.0%
!! GTTTTATAATTGAAGTTTGG+TGG - chr1_2:18940847-18940866 Msa0060970:intron 25.0%
! TGGTTATGCAATAACAAAAA+TGG - chr1_2:18940899-18940918 Msa0060970:intron 25.0%
! AAGAATTAACCCTTTCAATA+AGG - chr1_2:18941204-18941223 Msa0060970:intron 25.0%
! AGAATTAACCCTTTCAATAA+GGG - chr1_2:18941205-18941224 Msa0060970:intron 25.0%
!! ATCATTTTACAACCATTTTG+TGG - chr1_2:18941430-18941449 Msa0060970:intron 25.0%
! TCAATCTTAGAATCATTTCT+TGG + chr1_2:18941758-18941777 None:intergenic 25.0%
!!! AAGTCTTATTGTAATATCCA+AGG - chr1_2:18941892-18941911 Msa0060970:five_prime_UTR 25.0%
! GGATTTGATTATGAAGTTTA+AGG + chr1_2:18939982-18940001 None:intergenic 25.0%
! CTAAAACTTCGTATTAAAAG+AGG - chr1_2:18940049-18940068 Msa0060970:CDS 25.0%
!! ATTCTTTTGACAAAATTACC+GGG + chr1_2:18940293-18940312 None:intergenic 25.0%
! ATCTGTATTGAATTTACTCT+TGG + chr1_2:18940519-18940538 None:intergenic 25.0%
!! AATTTACAACCTTTCGTTTT+TGG + chr1_2:18940719-18940738 None:intergenic 25.0%
!! TTTGCAAATATCAAGAGTTT+TGG + chr1_2:18940783-18940802 None:intergenic 25.0%
!! GTTTTATAATTGAAGTTTGG+TGG - chr1_2:18940847-18940866 Msa0060970:intron 25.0%
! TGGTTATGCAATAACAAAAA+TGG - chr1_2:18940899-18940918 Msa0060970:intron 25.0%
! AAGAATTAACCCTTTCAATA+AGG - chr1_2:18941204-18941223 Msa0060970:intron 25.0%
! AGAATTAACCCTTTCAATAA+GGG - chr1_2:18941205-18941224 Msa0060970:intron 25.0%
!! ATCATTTTACAACCATTTTG+TGG - chr1_2:18941430-18941449 Msa0060970:intron 25.0%
! TCAATCTTAGAATCATTTCT+TGG + chr1_2:18941758-18941777 None:intergenic 25.0%
!!! AAGTCTTATTGTAATATCCA+AGG - chr1_2:18941892-18941911 Msa0060970:five_prime_UTR 25.0%
ACTTCATAATCAAATCCGTT+TGG - chr1_2:18939985-18940004 Msa0060970:CDS 30.0%
CAATGTTGACAACAACATAA+GGG + chr1_2:18940111-18940130 None:intergenic 30.0%
AGAGAAAAATAGAGAAAGCA+AGG + chr1_2:18940152-18940171 None:intergenic 30.0%
!! GCTTTCTCTATTTTTCTCTA+AGG - chr1_2:18940153-18940172 Msa0060970:CDS 30.0%
! TTGGTGATATTGTTAAGAGT+AGG - chr1_2:18940429-18940448 Msa0060970:intron 30.0%
TAGGAATATCCAAAACCTTA+TGG - chr1_2:18940448-18940467 Msa0060970:intron 30.0%
ATATCCAAAACCTTATGGTA+TGG - chr1_2:18940453-18940472 Msa0060970:intron 30.0%
! CTTTTCCTTTGCTTTGTAAA+TGG - chr1_2:18940481-18940500 Msa0060970:intron 30.0%
AGTTACCATTTACAAAGCAA+AGG + chr1_2:18940489-18940508 None:intergenic 30.0%
! TTGTCATCACATATTCCTTT+TGG - chr1_2:18940552-18940571 Msa0060970:intron 30.0%
!! TCATTTTAGTCACCATTTTG+AGG - chr1_2:18940636-18940655 Msa0060970:CDS 30.0%
!! CATTTTAGTCACCATTTTGA+GGG - chr1_2:18940637-18940656 Msa0060970:CDS 30.0%
!! TTGATTTTAGTCCCTCAAAA+TGG + chr1_2:18940651-18940670 None:intergenic 30.0%
TTAATTCTTCATTCCACTCA+GGG + chr1_2:18941193-18941212 None:intergenic 30.0%
TCTTACATCCCTTATTGAAA+GGG + chr1_2:18941216-18941235 None:intergenic 30.0%
! AATCTGAAATCTCCACAAAA+TGG + chr1_2:18941445-18941464 None:intergenic 30.0%
ATTTGTACACATTGAGCATA+TGG + chr1_2:18941627-18941646 None:intergenic 30.0%
TCAATGTGTACAAATGAAGT+TGG - chr1_2:18941632-18941651 Msa0060970:intron 30.0%
AGCAGTTGTATTTGGAAAAA+TGG - chr1_2:18941723-18941742 Msa0060970:CDS 30.0%
ATCTTAGAATCATTTCTTGG+AGG + chr1_2:18941755-18941774 None:intergenic 30.0%
TAGTCATTTGATTCATGCAT+TGG + chr1_2:18941919-18941938 None:intergenic 30.0%
ACTTCATAATCAAATCCGTT+TGG - chr1_2:18939985-18940004 Msa0060970:CDS 30.0%
CAATGTTGACAACAACATAA+GGG + chr1_2:18940111-18940130 None:intergenic 30.0%
AGAGAAAAATAGAGAAAGCA+AGG + chr1_2:18940152-18940171 None:intergenic 30.0%
!! GCTTTCTCTATTTTTCTCTA+AGG - chr1_2:18940153-18940172 Msa0060970:CDS 30.0%
! TTGGTGATATTGTTAAGAGT+AGG - chr1_2:18940429-18940448 Msa0060970:intron 30.0%
TAGGAATATCCAAAACCTTA+TGG - chr1_2:18940448-18940467 Msa0060970:intron 30.0%
ATATCCAAAACCTTATGGTA+TGG - chr1_2:18940453-18940472 Msa0060970:intron 30.0%
! CTTTTCCTTTGCTTTGTAAA+TGG - chr1_2:18940481-18940500 Msa0060970:intron 30.0%
AGTTACCATTTACAAAGCAA+AGG + chr1_2:18940489-18940508 None:intergenic 30.0%
! TTGTCATCACATATTCCTTT+TGG - chr1_2:18940552-18940571 Msa0060970:intron 30.0%
!! TCATTTTAGTCACCATTTTG+AGG - chr1_2:18940636-18940655 Msa0060970:CDS 30.0%
!! CATTTTAGTCACCATTTTGA+GGG - chr1_2:18940637-18940656 Msa0060970:CDS 30.0%
!! TTGATTTTAGTCCCTCAAAA+TGG + chr1_2:18940651-18940670 None:intergenic 30.0%
TTAATTCTTCATTCCACTCA+GGG + chr1_2:18941193-18941212 None:intergenic 30.0%
TCTTACATCCCTTATTGAAA+GGG + chr1_2:18941216-18941235 None:intergenic 30.0%
! AATCTGAAATCTCCACAAAA+TGG + chr1_2:18941445-18941464 None:intergenic 30.0%
ATTTGTACACATTGAGCATA+TGG + chr1_2:18941627-18941646 None:intergenic 30.0%
TCAATGTGTACAAATGAAGT+TGG - chr1_2:18941632-18941651 Msa0060970:intron 30.0%
AGCAGTTGTATTTGGAAAAA+TGG - chr1_2:18941723-18941742 Msa0060970:CDS 30.0%
ATCTTAGAATCATTTCTTGG+AGG + chr1_2:18941755-18941774 None:intergenic 30.0%
TAGTCATTTGATTCATGCAT+TGG + chr1_2:18941919-18941938 None:intergenic 30.0%
TACCTGCCAAAACAAAATTG+AGG - chr1_2:18939794-18939813 Msa0060970:three_prime_UTR 35.0%
TGCCAAAACAAAATTGAGGT+CGG - chr1_2:18939798-18939817 Msa0060970:three_prime_UTR 35.0%
!! TACCGACCTCAATTTTGTTT+TGG + chr1_2:18939803-18939822 None:intergenic 35.0%
AAGTTTAAGGAGCTTCTTTG+GGG + chr1_2:18939969-18939988 None:intergenic 35.0%
GAAGTTTAAGGAGCTTCTTT+GGG + chr1_2:18939970-18939989 None:intergenic 35.0%
TGAAGTTTAAGGAGCTTCTT+TGG + chr1_2:18939971-18939990 None:intergenic 35.0%
GGCATGGATAATAATGTTCT+TGG - chr1_2:18940022-18940041 Msa0060970:CDS 35.0%
CCAATGTTGACAACAACATA+AGG + chr1_2:18940112-18940131 None:intergenic 35.0%
CCTTATGTTGTTGTCAACAT+TGG - chr1_2:18940109-18940128 Msa0060970:CDS 35.0%
TCATGATTCCGTCAAAATCA+CGG - chr1_2:18940347-18940366 Msa0060970:intron 35.0%
! TGAACCATACCATAAGGTTT+TGG + chr1_2:18940460-18940479 None:intergenic 35.0%
AAAAGCTGAACCATACCATA+AGG + chr1_2:18940466-18940485 None:intergenic 35.0%
!! CACATATTCCTTTTGGTCTT+TGG - chr1_2:18940559-18940578 Msa0060970:intron 35.0%
GAACAAAGACCAAAAACGAA+AGG - chr1_2:18940707-18940726 Msa0060970:intron 35.0%
TAATGGTTCGTATGTGTGTT+TGG - chr1_2:18940879-18940898 Msa0060970:intron 35.0%
GTTAATTCTTCATTCCACTC+AGG + chr1_2:18941194-18941213 None:intergenic 35.0%
CTCTTACATCCCTTATTGAA+AGG + chr1_2:18941217-18941236 None:intergenic 35.0%
! GTTTTACTTACCAGACGTAT+TGG + chr1_2:18941242-18941261 None:intergenic 35.0%
GTAATGCATGCTAAGTTAGA+TGG + chr1_2:18941270-18941289 None:intergenic 35.0%
!! TTTTTGTTTCTTTCCGCAGA+CGG - chr1_2:18941539-18941558 Msa0060970:intron 35.0%
AAGTTGGATACTCTTCCAAA+TGG - chr1_2:18941648-18941667 Msa0060970:intron 35.0%
AAATGGTTGTGCAATCAAGA+GGG - chr1_2:18941665-18941684 Msa0060970:intron 35.0%
AGATTGAGAAATGTTGAGAG+TGG - chr1_2:18941771-18941790 Msa0060970:CDS 35.0%
AAATGTTGAGAGTGGAGAAT+TGG - chr1_2:18941779-18941798 Msa0060970:exon 35.0%
AATTGGTTGTGGAAATTGAG+TGG - chr1_2:18941796-18941815 Msa0060970:five_prime_UTR 35.0%
ATTGGTTGTGGAAATTGAGT+GGG - chr1_2:18941797-18941816 Msa0060970:five_prime_UTR 35.0%
TACCTGCCAAAACAAAATTG+AGG - chr1_2:18939794-18939813 Msa0060970:three_prime_UTR 35.0%
TGCCAAAACAAAATTGAGGT+CGG - chr1_2:18939798-18939817 Msa0060970:three_prime_UTR 35.0%
!! TACCGACCTCAATTTTGTTT+TGG + chr1_2:18939803-18939822 None:intergenic 35.0%
AAGTTTAAGGAGCTTCTTTG+GGG + chr1_2:18939969-18939988 None:intergenic 35.0%
GAAGTTTAAGGAGCTTCTTT+GGG + chr1_2:18939970-18939989 None:intergenic 35.0%
TGAAGTTTAAGGAGCTTCTT+TGG + chr1_2:18939971-18939990 None:intergenic 35.0%
GGCATGGATAATAATGTTCT+TGG - chr1_2:18940022-18940041 Msa0060970:CDS 35.0%
CCAATGTTGACAACAACATA+AGG + chr1_2:18940112-18940131 None:intergenic 35.0%
CCTTATGTTGTTGTCAACAT+TGG - chr1_2:18940109-18940128 Msa0060970:CDS 35.0%
TCATGATTCCGTCAAAATCA+CGG - chr1_2:18940347-18940366 Msa0060970:intron 35.0%
! TGAACCATACCATAAGGTTT+TGG + chr1_2:18940460-18940479 None:intergenic 35.0%
AAAAGCTGAACCATACCATA+AGG + chr1_2:18940466-18940485 None:intergenic 35.0%
!! CACATATTCCTTTTGGTCTT+TGG - chr1_2:18940559-18940578 Msa0060970:intron 35.0%
GAACAAAGACCAAAAACGAA+AGG - chr1_2:18940707-18940726 Msa0060970:intron 35.0%
TAATGGTTCGTATGTGTGTT+TGG - chr1_2:18940879-18940898 Msa0060970:intron 35.0%
GTTAATTCTTCATTCCACTC+AGG + chr1_2:18941194-18941213 None:intergenic 35.0%
CTCTTACATCCCTTATTGAA+AGG + chr1_2:18941217-18941236 None:intergenic 35.0%
! GTTTTACTTACCAGACGTAT+TGG + chr1_2:18941242-18941261 None:intergenic 35.0%
GTAATGCATGCTAAGTTAGA+TGG + chr1_2:18941270-18941289 None:intergenic 35.0%
!! TTTTTGTTTCTTTCCGCAGA+CGG - chr1_2:18941539-18941558 Msa0060970:intron 35.0%
AAGTTGGATACTCTTCCAAA+TGG - chr1_2:18941648-18941667 Msa0060970:intron 35.0%
AAATGGTTGTGCAATCAAGA+GGG - chr1_2:18941665-18941684 Msa0060970:intron 35.0%
AGATTGAGAAATGTTGAGAG+TGG - chr1_2:18941771-18941790 Msa0060970:CDS 35.0%
AAATGTTGAGAGTGGAGAAT+TGG - chr1_2:18941779-18941798 Msa0060970:exon 35.0%
AATTGGTTGTGGAAATTGAG+TGG - chr1_2:18941796-18941815 Msa0060970:five_prime_UTR 35.0%
ATTGGTTGTGGAAATTGAGT+GGG - chr1_2:18941797-18941816 Msa0060970:five_prime_UTR 35.0%
TTGCGATCTAGCAACTTTGT+AGG - chr1_2:18939719-18939738 Msa0060970:three_prime_UTR 40.0%
TGCGATCTAGCAACTTTGTA+GGG - chr1_2:18939720-18939739 Msa0060970:three_prime_UTR 40.0%
TCTAGCAACTTTGTAGGGAT+AGG - chr1_2:18939725-18939744 Msa0060970:three_prime_UTR 40.0%
!!! GACCTCAATTTTGTTTTGGC+AGG + chr1_2:18939799-18939818 None:intergenic 40.0%
AGTTTAAGGAGCTTCTTTGG+GGG + chr1_2:18939968-18939987 None:intergenic 40.0%
! ATCCGTTTGGCAAGTCATTT+TGG - chr1_2:18939998-18940017 Msa0060970:CDS 40.0%
! CTCCAAAATGACTTGCCAAA+CGG + chr1_2:18940003-18940022 None:intergenic 40.0%
TGTCAACATTGGTCATGAAC+AGG - chr1_2:18940120-18940139 Msa0060970:CDS 40.0%
CATGATTCCGTCAAAATCAC+GGG - chr1_2:18940348-18940367 Msa0060970:intron 40.0%
ATGATTCCGTCAAAATCACG+GGG - chr1_2:18940349-18940368 Msa0060970:intron 40.0%
! CAAAAACCCCGTGATTTTGA+CGG + chr1_2:18940358-18940377 None:intergenic 40.0%
! TTTGGTGGCAACACACATAA+TGG - chr1_2:18940862-18940881 Msa0060970:intron 40.0%
AAAACAATTGCAACCCTGAG+TGG - chr1_2:18941177-18941196 Msa0060970:intron 40.0%
TGTAAGAGTTCCAATACGTC+TGG - chr1_2:18941229-18941248 Msa0060970:intron 40.0%
TCTTTGTCAAAAACCGTCTG+CGG + chr1_2:18941555-18941574 None:intergenic 40.0%
CTCTTGATTGCACAACCATT+TGG + chr1_2:18941666-18941685 None:intergenic 40.0%
CAAATGGTTGTGCAATCAAG+AGG - chr1_2:18941664-18941683 Msa0060970:intron 40.0%
TCAAGAGGGTTCAAGCAAAT+AGG - chr1_2:18941679-18941698 Msa0060970:CDS 40.0%
CTGAAGAGAGCAGTTGTATT+TGG - chr1_2:18941715-18941734 Msa0060970:CDS 40.0%
CAGGTTGCAAAGGTCTATTA+GGG - chr1_2:18941829-18941848 Msa0060970:five_prime_UTR 40.0%
AGGTTGCAAAGGTCTATTAG+GGG - chr1_2:18941830-18941849 Msa0060970:five_prime_UTR 40.0%
TTGATTCATGCATTGGACCT+TGG + chr1_2:18941912-18941931 None:intergenic 40.0%
TTGCGATCTAGCAACTTTGT+AGG - chr1_2:18939719-18939738 Msa0060970:three_prime_UTR 40.0%
TGCGATCTAGCAACTTTGTA+GGG - chr1_2:18939720-18939739 Msa0060970:three_prime_UTR 40.0%
TCTAGCAACTTTGTAGGGAT+AGG - chr1_2:18939725-18939744 Msa0060970:three_prime_UTR 40.0%
!!! GACCTCAATTTTGTTTTGGC+AGG + chr1_2:18939799-18939818 None:intergenic 40.0%
AGTTTAAGGAGCTTCTTTGG+GGG + chr1_2:18939968-18939987 None:intergenic 40.0%
! ATCCGTTTGGCAAGTCATTT+TGG - chr1_2:18939998-18940017 Msa0060970:CDS 40.0%
! CTCCAAAATGACTTGCCAAA+CGG + chr1_2:18940003-18940022 None:intergenic 40.0%
TGTCAACATTGGTCATGAAC+AGG - chr1_2:18940120-18940139 Msa0060970:CDS 40.0%
CATGATTCCGTCAAAATCAC+GGG - chr1_2:18940348-18940367 Msa0060970:intron 40.0%
ATGATTCCGTCAAAATCACG+GGG - chr1_2:18940349-18940368 Msa0060970:intron 40.0%
! CAAAAACCCCGTGATTTTGA+CGG + chr1_2:18940358-18940377 None:intergenic 40.0%
! TTTGGTGGCAACACACATAA+TGG - chr1_2:18940862-18940881 Msa0060970:intron 40.0%
AAAACAATTGCAACCCTGAG+TGG - chr1_2:18941177-18941196 Msa0060970:intron 40.0%
TGTAAGAGTTCCAATACGTC+TGG - chr1_2:18941229-18941248 Msa0060970:intron 40.0%
TCTTTGTCAAAAACCGTCTG+CGG + chr1_2:18941555-18941574 None:intergenic 40.0%
CTCTTGATTGCACAACCATT+TGG + chr1_2:18941666-18941685 None:intergenic 40.0%
CAAATGGTTGTGCAATCAAG+AGG - chr1_2:18941664-18941683 Msa0060970:intron 40.0%
TCAAGAGGGTTCAAGCAAAT+AGG - chr1_2:18941679-18941698 Msa0060970:CDS 40.0%
CTGAAGAGAGCAGTTGTATT+TGG - chr1_2:18941715-18941734 Msa0060970:CDS 40.0%
CAGGTTGCAAAGGTCTATTA+GGG - chr1_2:18941829-18941848 Msa0060970:five_prime_UTR 40.0%
AGGTTGCAAAGGTCTATTAG+GGG - chr1_2:18941830-18941849 Msa0060970:five_prime_UTR 40.0%
TTGATTCATGCATTGGACCT+TGG + chr1_2:18941912-18941931 None:intergenic 40.0%
CAACTTTGTAGGGATAGGAG+AGG - chr1_2:18939730-18939749 Msa0060970:three_prime_UTR 45.0%
!! CGTTTGGCAAGTCATTTTGG+AGG - chr1_2:18940001-18940020 Msa0060970:CDS 45.0%
ACAGAACGCCAAAGACCAAA+AGG + chr1_2:18940570-18940589 None:intergenic 45.0%
TTTCTCCGTCGACGACAAAA+TGG - chr1_2:18941578-18941597 Msa0060970:intron 45.0%
TTCTCCGTCGACGACAAAAT+GGG - chr1_2:18941579-18941598 Msa0060970:intron 45.0%
! ATCACCCATTTTGTCGTCGA+CGG + chr1_2:18941586-18941605 None:intergenic 45.0%
TACAACTGCTCTCTTCAGCA+AGG + chr1_2:18941713-18941732 None:intergenic 45.0%
TGAGAGTGGAGAATTGGTTG+TGG - chr1_2:18941785-18941804 Msa0060970:exon 45.0%
CCTAATAGACCTTTGCAACC+TGG + chr1_2:18941831-18941850 None:intergenic 45.0%
CCAGGTTGCAAAGGTCTATT+AGG - chr1_2:18941828-18941847 Msa0060970:five_prime_UTR 45.0%
CAACTTTGTAGGGATAGGAG+AGG - chr1_2:18939730-18939749 Msa0060970:three_prime_UTR 45.0%
!! CGTTTGGCAAGTCATTTTGG+AGG - chr1_2:18940001-18940020 Msa0060970:CDS 45.0%
ACAGAACGCCAAAGACCAAA+AGG + chr1_2:18940570-18940589 None:intergenic 45.0%
TTTCTCCGTCGACGACAAAA+TGG - chr1_2:18941578-18941597 Msa0060970:intron 45.0%
TTCTCCGTCGACGACAAAAT+GGG - chr1_2:18941579-18941598 Msa0060970:intron 45.0%
! ATCACCCATTTTGTCGTCGA+CGG + chr1_2:18941586-18941605 None:intergenic 45.0%
TACAACTGCTCTCTTCAGCA+AGG + chr1_2:18941713-18941732 None:intergenic 45.0%
TGAGAGTGGAGAATTGGTTG+TGG - chr1_2:18941785-18941804 Msa0060970:exon 45.0%
CCTAATAGACCTTTGCAACC+TGG + chr1_2:18941831-18941850 None:intergenic 45.0%
CCAGGTTGCAAAGGTCTATT+AGG - chr1_2:18941828-18941847 Msa0060970:five_prime_UTR 45.0%
!! GGCAAGTCATTTTGGAGGCA+TGG - chr1_2:18940006-18940025 Msa0060970:CDS 50.0%
GACAACAACATAAGGGTCGC+TGG + chr1_2:18940104-18940123 None:intergenic 50.0%
TTGCAGAATCATCGTGTGCC+CGG - chr1_2:18940272-18940291 Msa0060970:intron 50.0%
GGTTGTGGAAATTGAGTGGG+TGG - chr1_2:18941800-18941819 Msa0060970:five_prime_UTR 50.0%
ATTGAGTGGGTGGATGTTCC+AGG - chr1_2:18941810-18941829 Msa0060970:five_prime_UTR 50.0%
GTGGATGTTCCAGGTTGCAA+AGG - chr1_2:18941819-18941838 Msa0060970:five_prime_UTR 50.0%
!! GGCAAGTCATTTTGGAGGCA+TGG - chr1_2:18940006-18940025 Msa0060970:CDS 50.0%
GACAACAACATAAGGGTCGC+TGG + chr1_2:18940104-18940123 None:intergenic 50.0%
TTGCAGAATCATCGTGTGCC+CGG - chr1_2:18940272-18940291 Msa0060970:intron 50.0%
GGTTGTGGAAATTGAGTGGG+TGG - chr1_2:18941800-18941819 Msa0060970:five_prime_UTR 50.0%
ATTGAGTGGGTGGATGTTCC+AGG - chr1_2:18941810-18941829 Msa0060970:five_prime_UTR 50.0%
GTGGATGTTCCAGGTTGCAA+AGG - chr1_2:18941819-18941838 Msa0060970:five_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18939700 18942120 18939700 ID=Msa0060970;Name=Msa0060970
chr1_2 mRNA 18939700 18942120 18939700 ID=Msa0060970-mRNA-1;Parent=Msa0060970;Name=Msa0060970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=325|1|1|1|1|1|3|257|172
chr1_2 exon 18939700 18940262 18939700 ID=Msa0060970-mRNA-1:exon:7290;Parent=Msa0060970-mRNA-1
chr1_2 exon 18940570 18940665 18940570 ID=Msa0060970-mRNA-1:exon:7289;Parent=Msa0060970-mRNA-1
chr1_2 exon 18941679 18942120 18941679 ID=Msa0060970-mRNA-1:exon:7288;Parent=Msa0060970-mRNA-1
chr1_2 five_prime_UTR 18941796 18942120 18941796 ID=Msa0060970-mRNA-1:five_prime_utr;Parent=Msa0060970-mRNA-1
chr1_2 CDS 18941679 18941795 18941679 ID=Msa0060970-mRNA-1:cds;Parent=Msa0060970-mRNA-1
chr1_2 CDS 18940570 18940665 18940570 ID=Msa0060970-mRNA-1:cds;Parent=Msa0060970-mRNA-1
chr1_2 CDS 18939957 18940262 18939957 ID=Msa0060970-mRNA-1:cds;Parent=Msa0060970-mRNA-1
chr1_2 three_prime_UTR 18939700 18939956 18939700 ID=Msa0060970-mRNA-1:three_prime_utr;Parent=Msa0060970-mRNA-1
Gene Sequence

>Msa0060970

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa0060970

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*