AlfalfaGEDB | Msa1415820

M. sativa cultivar zhongmu-4 / Msa1415820

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	sp\|Q9S7J9\|CAR9_ARATH	66.864	169	53	2	1	167	1	168	2.46e-79	236

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	G7I9Z6	97.093	172	5	0	1	172	1	172	2.79e-117	338

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012260	Msa1415820	0.999058	4.039249e-288	-8.615850e-47
Msa0060970	Msa1415820	0.996233	5.547381e-225	-8.615850e-47
Msa0108850	Msa1415820	0.912877	1.176374e-83	-8.615850e-47
Msa1368180	Msa1415820	0.806206	9.205528e-50	-8.615850e-47
Msa1372340	Msa1415820	0.821604	3.695923e-53	-8.615850e-47
Msa1385580	Msa1415820	0.805974	1.029954e-49	-8.615850e-47
Msa0137660	Msa1415820	-0.826117	3.234889e-54	-8.615850e-47
Msa0151950	Msa1415820	0.910036	2.934563e-82	-8.615850e-47
Msa0182750	Msa1415820	-0.826216	3.063315e-54	-8.615850e-47
Msa0370870	Msa1415820	0.863651	2.137754e-64	-8.615850e-47
Msa0419050	Msa1415820	0.852315	5.003796e-61	-8.615850e-47
Msa0431020	Msa1415820	0.823556	1.299556e-53	-8.615850e-47
Msa0271740	Msa1415820	0.818298	2.108456e-52	-8.615850e-47
Msa0288320	Msa1415820	0.826439	2.710874e-54	-8.615850e-47
Msa0310380	Msa1415820	0.820612	6.257106e-53	-8.615850e-47
Msa0310490	Msa1415820	0.807580	4.715349e-50	-8.615850e-47
Msa0312310	Msa1415820	0.815075	1.113050e-51	-8.615850e-47
Msa0324880	Msa1415820	0.821551	3.801418e-53	-8.615850e-47
Msa0508540	Msa1415820	0.802817	4.686099e-49	-8.615850e-47
Msa0510560	Msa1415820	0.862791	3.945659e-64	-8.615850e-47
Msa0873930	Msa1415820	0.814303	1.650590e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	MtrunA17_Chr1g0160811	97.093	172	5	0	1	172	1	172	5.38e-121	338
Msa1415820	MtrunA17_Chr4g0043861	65.644	163	55	1	4	166	3	164	3.75e-76	225
Msa1415820	MtrunA17_Chr3g0111361	62.346	162	60	1	4	165	3	163	7.17e-74	219
Msa1415820	MtrunA17_Chr2g0280981	58.537	164	67	1	4	167	2	164	4.46e-70	209
Msa1415820	MtrunA17_Chr8g0393081	58.537	164	67	1	4	167	19	181	1.03e-69	209
Msa1415820	MtrunA17_Chr6g0478401	55.488	164	72	1	4	167	15	177	9.72e-65	196
Msa1415820	MtrunA17_Chr8g0352751	43.226	155	86	2	6	159	5	158	3.36e-40	133
Msa1415820	MtrunA17_Chr8g0380381	44.937	158	85	2	5	161	88	244	7.30e-39	132
Msa1415820	MtrunA17_Chr3g0083541	42.949	156	87	2	5	159	242	396	2.98e-34	124
Msa1415820	MtrunA17_Chr2g0292461	42.405	158	89	2	5	161	171	327	4.02e-34	122
Msa1415820	MtrunA17_Chr2g0290631	42.282	149	83	2	6	152	5	152	1.17e-30	109
Msa1415820	MtrunA17_Chr2g0290721	34.118	85	54	2	9	92	3	86	1.23e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	AT1G70790.3	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT1G70790.2	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT1G70790.1	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT2G01540.1	60.355	169	64	2	1	167	1	168	6.78e-72	214
Msa1415820	AT1G70810.1	60.736	163	63	1	5	167	4	165	4.15e-70	209
Msa1415820	AT3G17980.1	56.364	165	71	1	3	167	14	177	1.69e-68	206
Msa1415820	AT1G48590.4	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa1415820	AT1G48590.1	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa1415820	AT1G48590.2	56.970	165	69	2	3	167	38	200	6.59e-67	202
Msa1415820	AT1G73580.1	54.545	165	74	1	3	167	5	168	4.74e-66	199
Msa1415820	AT1G23140.1	56.707	164	70	1	4	167	3	165	4.45e-64	194
Msa1415820	AT1G70790.4	70.769	130	36	1	40	167	2	131	1.68e-63	192
Msa1415820	AT1G66360.1	53.374	163	73	2	4	164	3	164	2.70e-62	190
Msa1415820	AT5G37740.1	51.497	167	77	2	4	167	3	168	5.22e-62	189
Msa1415820	AT1G70800.1	53.374	163	75	1	5	167	13	174	9.31e-61	186
Msa1415820	AT5G37740.2	48.295	176	79	2	4	167	3	178	2.57e-59	182
Msa1415820	AT1G48590.3	44.848	165	57	2	3	167	38	168	1.73e-46	150
Msa1415820	AT4G05330.2	47.436	156	80	2	5	159	143	297	5.81e-39	134
Msa1415820	AT4G21160.2	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa1415820	AT4G21160.3	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa1415820	AT4G21160.1	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa1415820	AT4G21160.4	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa1415820	AT4G05330.3	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa1415820	AT4G05330.1	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa1415820	AT5G47710.1	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa1415820	AT5G47710.2	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa1415820	AT5G47710.3	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa1415820	AT5G47710.4	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa1415820	AT3G07940.1	42.208	154	87	2	5	157	227	379	3.85e-35	126

Find 59 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAACTTTATATAATAATTT+AGG	0.187365	tig0024288:-30232	None:intergenic
CCAGGTTGCAAAGGTCTATT+AGG	0.188697	tig0024288:+30108	Msa1415820:CDS
ATCCGTTTGGCAAGTCATTT+TGG	0.197413	tig0024288:+28278	Msa1415820:five_prime_UTR
CTGAAGAGAGCAGTTGTATT+TGG	0.198293	tig0024288:+29995	Msa1415820:CDS
TTTCTCCGTCGACGACAAAA+TGG	0.198849	tig0024288:+29858	Msa1415820:CDS
GGATTTGATTATGAAGTTTA+AGG	0.225701	tig0024288:-28259	None:intergenic
AAGAATTAACCCTTTCAATA+AGG	0.243737	tig0024288:+29484	Msa1415820:CDS
TGAAGTTTAAGGAGCTTCTT+TGG	0.258075	tig0024288:-28248	None:intergenic
TCAATCTTAGAATCATTTCT+TGG	0.308077	tig0024288:-30035	None:intergenic
ATTTGTACACATTGAGCATA+TGG	0.352534	tig0024288:-29904	None:intergenic
AGAATTAACCCTTTCAATAA+GGG	0.363219	tig0024288:+29485	Msa1415820:CDS
TTGCGATCTAGCAACTTTGT+AGG	0.368798	tig0024288:+27999	Msa1415820:five_prime_UTR
GAAGTTTAAGGAGCTTCTTT+GGG	0.377034	tig0024288:-28247	None:intergenic
ATTGAGTGGGTGGATGTTCC+AGG	0.378200	tig0024288:+30090	Msa1415820:CDS
GGCATGGATAATAATGTTCT+TGG	0.394699	tig0024288:+28302	Msa1415820:exon
CTCTTGATTGCACAACCATT+TGG	0.400401	tig0024288:-29943	None:intergenic
TCAAGAGGGTTCAAGCAAAT+AGG	0.403301	tig0024288:+29959	Msa1415820:CDS
ACTTCATAATCAAATCCGTT+TGG	0.419897	tig0024288:+28265	Msa1415820:five_prime_UTR
TTCTCCGTCGACGACAAAAT+GGG	0.428457	tig0024288:+29859	Msa1415820:CDS
CTAAAACTTCGTATTAAAAG+AGG	0.428755	tig0024288:+28329	Msa1415820:CDS
TGTCAACATTGGTCATGAAC+AGG	0.430334	tig0024288:+28400	Msa1415820:CDS
AAATGTTGAGAGTGGAGAAT+TGG	0.430897	tig0024288:+30059	Msa1415820:CDS
CCAATGTTGACAACAACATA+AGG	0.434516	tig0024288:-28389	None:intergenic
CAGGTTGCAAAGGTCTATTA+GGG	0.446108	tig0024288:+30109	Msa1415820:CDS
AAATGTGATGTAATATATAG+TGG	0.446651	tig0024288:+30294	Msa1415820:three_prime_UTR
CTCTTACATCCCTTATTGAA+AGG	0.451223	tig0024288:-29494	None:intergenic
TAGTCATTTGATTCATGCAT+TGG	0.459891	tig0024288:-30196	None:intergenic
TGCGATCTAGCAACTTTGTA+GGG	0.468752	tig0024288:+28000	Msa1415820:five_prime_UTR
TTGATTCATGCATTGGACCT+TGG	0.481199	tig0024288:-30189	None:intergenic
ATCTTAGAATCATTTCTTGG+AGG	0.484585	tig0024288:-30032	None:intergenic
CCTAATAGACCTTTGCAACC+TGG	0.491322	tig0024288:-30108	None:intergenic
TCTTACATCCCTTATTGAAA+GGG	0.497303	tig0024288:-29493	None:intergenic
CTCCAAAATGACTTGCCAAA+CGG	0.499213	tig0024288:-28280	None:intergenic
TGTAAGAGTTCCAATACGTC+TGG	0.504818	tig0024288:+29509	Msa1415820:CDS
GTTAATTCTTCATTCCACTC+AGG	0.513309	tig0024288:-29471	None:intergenic
AAGTTGGATACTCTTCCAAA+TGG	0.514104	tig0024288:+29928	Msa1415820:CDS
TTAATTCTTCATTCCACTCA+GGG	0.514723	tig0024288:-29470	None:intergenic
CCTTATGTTGTTGTCAACAT+TGG	0.522538	tig0024288:+28389	Msa1415820:CDS
CAATGTTGACAACAACATAA+GGG	0.538879	tig0024288:-28388	None:intergenic
AGATTGAGAAATGTTGAGAG+TGG	0.545029	tig0024288:+30051	Msa1415820:CDS
TGAGAGTGGAGAATTGGTTG+TGG	0.553380	tig0024288:+30065	Msa1415820:CDS
GTGGATGTTCCAGGTTGCAA+AGG	0.560781	tig0024288:+30099	Msa1415820:CDS
GACAACAACATAAGGGTCGC+TGG	0.561798	tig0024288:-28381	None:intergenic
CAAATGGTTGTGCAATCAAG+AGG	0.565429	tig0024288:+29944	Msa1415820:CDS
AAGTTTAAGGAGCTTCTTTG+GGG	0.573694	tig0024288:-28246	None:intergenic
TCTAGCAACTTTGTAGGGAT+AGG	0.576005	tig0024288:+28005	Msa1415820:five_prime_UTR
TCAATGTGTACAAATGAAGT+TGG	0.578075	tig0024288:+29912	Msa1415820:CDS
AAGTCTTATTGTAATATCCA+AGG	0.599466	tig0024288:+30172	Msa1415820:three_prime_UTR
AAAACAATTGCAACCCTGAG+TGG	0.600340	tig0024288:+29457	Msa1415820:CDS
AATTGGTTGTGGAAATTGAG+TGG	0.610176	tig0024288:+30076	Msa1415820:CDS
GGTTGTGGAAATTGAGTGGG+TGG	0.614075	tig0024288:+30080	Msa1415820:CDS
ATTGGTTGTGGAAATTGAGT+GGG	0.621207	tig0024288:+30077	Msa1415820:CDS
AAATGGTTGTGCAATCAAGA+GGG	0.626231	tig0024288:+29945	Msa1415820:CDS
TGCCAAAACAAAATTGAGGT+CGG	0.639420	tig0024288:+28078	Msa1415820:five_prime_UTR
TACCTGCCAAAACAAAATTG+AGG	0.651981	tig0024288:+28074	Msa1415820:five_prime_UTR
TACAACTGCTCTCTTCAGCA+AGG	0.655573	tig0024288:-29990	None:intergenic
CAACTTTGTAGGGATAGGAG+AGG	0.686770	tig0024288:+28010	Msa1415820:five_prime_UTR
AGGTTGCAAAGGTCTATTAG+GGG	0.692342	tig0024288:+30110	Msa1415820:CDS
AGTTTAAGGAGCTTCTTTGG+GGG	0.694941	tig0024288:-28245	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAAAAAAAAAATTTTACG+AGG	+	tig0024288:29030-29049	Msa1415820:intron	10.0%
!!!	TTTTAAGTTAAAATCAATTA+CGG	+	tig0024288:29295-29314	Msa1415820:intron	10.0%
!!	TGAGAAATTATTATTAATAA+CGG	+	tig0024288:29674-29693	Msa1415820:intron	10.0%
!!	ACAACTTTATATAATAATTT+AGG	-	tig0024288:30235-30254	None:intergenic	10.0%
!!!	AAAAAAAAAAAAATTTTACG+AGG	+	tig0024288:29030-29049	Msa1415820:intron	10.0%
!!!	TTTTAAGTTAAAATCAATTA+CGG	+	tig0024288:29295-29314	Msa1415820:intron	10.0%
!!	TGAGAAATTATTATTAATAA+CGG	+	tig0024288:29674-29693	Msa1415820:intron	10.0%
!!	ACAACTTTATATAATAATTT+AGG	-	tig0024288:30235-30254	None:intergenic	10.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	-	tig0024288:28150-28169	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTAGACTC+AGG	-	tig0024288:29023-29042	None:intergenic	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	-	tig0024288:29104-29123	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	-	tig0024288:29105-29124	None:intergenic	15.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	-	tig0024288:28150-28169	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTAGACTC+AGG	-	tig0024288:29023-29042	None:intergenic	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	-	tig0024288:29104-29123	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	-	tig0024288:29105-29124	None:intergenic	15.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	-	tig0024288:28574-28593	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	+	tig0024288:28690-28709	Msa1415820:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	+	tig0024288:28951-28970	Msa1415820:intron	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	+	tig0024288:29124-29143	Msa1415820:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	+	tig0024288:29228-29247	Msa1415820:intron	20.0%
!!	AAATGTGATGTAATATATAG+TGG	+	tig0024288:30294-30313	Msa1415820:three_prime_UTR	20.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	-	tig0024288:28574-28593	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	+	tig0024288:28690-28709	Msa1415820:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	+	tig0024288:28951-28970	Msa1415820:intron	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	+	tig0024288:29124-29143	Msa1415820:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	+	tig0024288:29228-29247	Msa1415820:intron	20.0%
!!	AAATGTGATGTAATATATAG+TGG	+	tig0024288:30294-30313	Msa1415820:three_prime_UTR	20.0%
!	GGATTTGATTATGAAGTTTA+AGG	-	tig0024288:28262-28281	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	+	tig0024288:28329-28348	Msa1415820:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	-	tig0024288:28573-28592	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	-	tig0024288:28799-28818	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	-	tig0024288:28999-29018	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	-	tig0024288:29063-29082	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	+	tig0024288:29127-29146	Msa1415820:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	+	tig0024288:29179-29198	Msa1415820:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	+	tig0024288:29484-29503	Msa1415820:CDS	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	+	tig0024288:29485-29504	Msa1415820:CDS	25.0%
!!	ATCATTTTACAACCATTTTG+TGG	+	tig0024288:29710-29729	Msa1415820:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	-	tig0024288:30038-30057	None:intergenic	25.0%
!!!	AAGTCTTATTGTAATATCCA+AGG	+	tig0024288:30172-30191	Msa1415820:three_prime_UTR	25.0%
!	GGATTTGATTATGAAGTTTA+AGG	-	tig0024288:28262-28281	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	+	tig0024288:28329-28348	Msa1415820:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	-	tig0024288:28573-28592	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	-	tig0024288:28799-28818	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	-	tig0024288:28999-29018	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	-	tig0024288:29063-29082	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	+	tig0024288:29127-29146	Msa1415820:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	+	tig0024288:29179-29198	Msa1415820:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	+	tig0024288:29484-29503	Msa1415820:CDS	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	+	tig0024288:29485-29504	Msa1415820:CDS	25.0%
!!	ATCATTTTACAACCATTTTG+TGG	+	tig0024288:29710-29729	Msa1415820:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	-	tig0024288:30038-30057	None:intergenic	25.0%
!!!	AAGTCTTATTGTAATATCCA+AGG	+	tig0024288:30172-30191	Msa1415820:three_prime_UTR	25.0%
	ACTTCATAATCAAATCCGTT+TGG	+	tig0024288:28265-28284	Msa1415820:five_prime_UTR	30.0%
	CAATGTTGACAACAACATAA+GGG	-	tig0024288:28391-28410	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	-	tig0024288:28432-28451	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	+	tig0024288:28433-28452	Msa1415820:intron	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	+	tig0024288:28709-28728	Msa1415820:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	+	tig0024288:28728-28747	Msa1415820:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	+	tig0024288:28733-28752	Msa1415820:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	+	tig0024288:28761-28780	Msa1415820:intron	30.0%
	AGTTACCATTTACAAAGCAA+AGG	-	tig0024288:28769-28788	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	+	tig0024288:28832-28851	Msa1415820:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	+	tig0024288:28916-28935	Msa1415820:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	+	tig0024288:28917-28936	Msa1415820:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	-	tig0024288:28931-28950	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	-	tig0024288:29473-29492	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	-	tig0024288:29496-29515	None:intergenic	30.0%
!	AATCTGAAATCTCCACAAAA+TGG	-	tig0024288:29725-29744	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	-	tig0024288:29907-29926	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	+	tig0024288:29912-29931	Msa1415820:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	+	tig0024288:30003-30022	Msa1415820:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	-	tig0024288:30035-30054	None:intergenic	30.0%
	TAGTCATTTGATTCATGCAT+TGG	-	tig0024288:30199-30218	None:intergenic	30.0%
	ACTTCATAATCAAATCCGTT+TGG	+	tig0024288:28265-28284	Msa1415820:five_prime_UTR	30.0%
	CAATGTTGACAACAACATAA+GGG	-	tig0024288:28391-28410	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	-	tig0024288:28432-28451	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	+	tig0024288:28433-28452	Msa1415820:intron	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	+	tig0024288:28709-28728	Msa1415820:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	+	tig0024288:28728-28747	Msa1415820:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	+	tig0024288:28733-28752	Msa1415820:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	+	tig0024288:28761-28780	Msa1415820:intron	30.0%
	AGTTACCATTTACAAAGCAA+AGG	-	tig0024288:28769-28788	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	+	tig0024288:28832-28851	Msa1415820:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	+	tig0024288:28916-28935	Msa1415820:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	+	tig0024288:28917-28936	Msa1415820:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	-	tig0024288:28931-28950	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	-	tig0024288:29473-29492	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	-	tig0024288:29496-29515	None:intergenic	30.0%
!	AATCTGAAATCTCCACAAAA+TGG	-	tig0024288:29725-29744	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	-	tig0024288:29907-29926	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	+	tig0024288:29912-29931	Msa1415820:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	+	tig0024288:30003-30022	Msa1415820:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	-	tig0024288:30035-30054	None:intergenic	30.0%
	TAGTCATTTGATTCATGCAT+TGG	-	tig0024288:30199-30218	None:intergenic	30.0%
	TACCTGCCAAAACAAAATTG+AGG	+	tig0024288:28074-28093	Msa1415820:five_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	+	tig0024288:28078-28097	Msa1415820:five_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	-	tig0024288:28083-28102	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	-	tig0024288:28249-28268	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	-	tig0024288:28250-28269	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	-	tig0024288:28251-28270	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	+	tig0024288:28302-28321	Msa1415820:exon	35.0%
	CCAATGTTGACAACAACATA+AGG	-	tig0024288:28392-28411	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	+	tig0024288:28389-28408	Msa1415820:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	+	tig0024288:28627-28646	Msa1415820:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	-	tig0024288:28740-28759	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	-	tig0024288:28746-28765	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	+	tig0024288:28839-28858	Msa1415820:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	+	tig0024288:28987-29006	Msa1415820:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	+	tig0024288:29159-29178	Msa1415820:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	-	tig0024288:29474-29493	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	-	tig0024288:29497-29516	None:intergenic	35.0%
!	GTTTTACTTACCAGACGTAT+TGG	-	tig0024288:29522-29541	None:intergenic	35.0%
	GTAATGCATGCTAAGTTAGA+TGG	-	tig0024288:29550-29569	None:intergenic	35.0%
!!	TTTTTGTTTCTTTCCGCAGA+CGG	+	tig0024288:29819-29838	Msa1415820:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	+	tig0024288:29928-29947	Msa1415820:CDS	35.0%
	AAATGGTTGTGCAATCAAGA+GGG	+	tig0024288:29945-29964	Msa1415820:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	+	tig0024288:30051-30070	Msa1415820:CDS	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	+	tig0024288:30059-30078	Msa1415820:CDS	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	+	tig0024288:30076-30095	Msa1415820:CDS	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	+	tig0024288:30077-30096	Msa1415820:CDS	35.0%
	TACCTGCCAAAACAAAATTG+AGG	+	tig0024288:28074-28093	Msa1415820:five_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	+	tig0024288:28078-28097	Msa1415820:five_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	-	tig0024288:28083-28102	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	-	tig0024288:28249-28268	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	-	tig0024288:28250-28269	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	-	tig0024288:28251-28270	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	+	tig0024288:28302-28321	Msa1415820:exon	35.0%
	CCAATGTTGACAACAACATA+AGG	-	tig0024288:28392-28411	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	+	tig0024288:28389-28408	Msa1415820:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	+	tig0024288:28627-28646	Msa1415820:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	-	tig0024288:28740-28759	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	-	tig0024288:28746-28765	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	+	tig0024288:28839-28858	Msa1415820:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	+	tig0024288:28987-29006	Msa1415820:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	+	tig0024288:29159-29178	Msa1415820:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	-	tig0024288:29474-29493	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	-	tig0024288:29497-29516	None:intergenic	35.0%
!	GTTTTACTTACCAGACGTAT+TGG	-	tig0024288:29522-29541	None:intergenic	35.0%
	GTAATGCATGCTAAGTTAGA+TGG	-	tig0024288:29550-29569	None:intergenic	35.0%
!!	TTTTTGTTTCTTTCCGCAGA+CGG	+	tig0024288:29819-29838	Msa1415820:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	+	tig0024288:29928-29947	Msa1415820:CDS	35.0%
	AAATGGTTGTGCAATCAAGA+GGG	+	tig0024288:29945-29964	Msa1415820:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	+	tig0024288:30051-30070	Msa1415820:CDS	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	+	tig0024288:30059-30078	Msa1415820:CDS	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	+	tig0024288:30076-30095	Msa1415820:CDS	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	+	tig0024288:30077-30096	Msa1415820:CDS	35.0%
	TTGCGATCTAGCAACTTTGT+AGG	+	tig0024288:27999-28018	Msa1415820:five_prime_UTR	40.0%
	TGCGATCTAGCAACTTTGTA+GGG	+	tig0024288:28000-28019	Msa1415820:five_prime_UTR	40.0%
	TCTAGCAACTTTGTAGGGAT+AGG	+	tig0024288:28005-28024	Msa1415820:five_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	-	tig0024288:28079-28098	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	-	tig0024288:28248-28267	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	+	tig0024288:28278-28297	Msa1415820:five_prime_UTR	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	-	tig0024288:28283-28302	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	+	tig0024288:28400-28419	Msa1415820:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	+	tig0024288:28628-28647	Msa1415820:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	+	tig0024288:28629-28648	Msa1415820:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	-	tig0024288:28638-28657	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	+	tig0024288:29142-29161	Msa1415820:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	+	tig0024288:29457-29476	Msa1415820:CDS	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	+	tig0024288:29509-29528	Msa1415820:CDS	40.0%
	TCTTTGTCAAAAACCGTCTG+CGG	-	tig0024288:29835-29854	None:intergenic	40.0%
	CTCTTGATTGCACAACCATT+TGG	-	tig0024288:29946-29965	None:intergenic	40.0%
	CAAATGGTTGTGCAATCAAG+AGG	+	tig0024288:29944-29963	Msa1415820:CDS	40.0%
	TCAAGAGGGTTCAAGCAAAT+AGG	+	tig0024288:29959-29978	Msa1415820:CDS	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	+	tig0024288:29995-30014	Msa1415820:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	+	tig0024288:30109-30128	Msa1415820:CDS	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	+	tig0024288:30110-30129	Msa1415820:CDS	40.0%
	TTGATTCATGCATTGGACCT+TGG	-	tig0024288:30192-30211	None:intergenic	40.0%
	TTGCGATCTAGCAACTTTGT+AGG	+	tig0024288:27999-28018	Msa1415820:five_prime_UTR	40.0%
	TGCGATCTAGCAACTTTGTA+GGG	+	tig0024288:28000-28019	Msa1415820:five_prime_UTR	40.0%
	TCTAGCAACTTTGTAGGGAT+AGG	+	tig0024288:28005-28024	Msa1415820:five_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	-	tig0024288:28079-28098	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	-	tig0024288:28248-28267	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	+	tig0024288:28278-28297	Msa1415820:five_prime_UTR	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	-	tig0024288:28283-28302	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	+	tig0024288:28400-28419	Msa1415820:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	+	tig0024288:28628-28647	Msa1415820:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	+	tig0024288:28629-28648	Msa1415820:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	-	tig0024288:28638-28657	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	+	tig0024288:29142-29161	Msa1415820:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	+	tig0024288:29457-29476	Msa1415820:CDS	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	+	tig0024288:29509-29528	Msa1415820:CDS	40.0%
	TCTTTGTCAAAAACCGTCTG+CGG	-	tig0024288:29835-29854	None:intergenic	40.0%
	CTCTTGATTGCACAACCATT+TGG	-	tig0024288:29946-29965	None:intergenic	40.0%
	CAAATGGTTGTGCAATCAAG+AGG	+	tig0024288:29944-29963	Msa1415820:CDS	40.0%
	TCAAGAGGGTTCAAGCAAAT+AGG	+	tig0024288:29959-29978	Msa1415820:CDS	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	+	tig0024288:29995-30014	Msa1415820:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	+	tig0024288:30109-30128	Msa1415820:CDS	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	+	tig0024288:30110-30129	Msa1415820:CDS	40.0%
	TTGATTCATGCATTGGACCT+TGG	-	tig0024288:30192-30211	None:intergenic	40.0%
	CAACTTTGTAGGGATAGGAG+AGG	+	tig0024288:28010-28029	Msa1415820:five_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	+	tig0024288:28281-28300	Msa1415820:five_prime_UTR	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	-	tig0024288:28850-28869	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	+	tig0024288:29858-29877	Msa1415820:CDS	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	+	tig0024288:29859-29878	Msa1415820:CDS	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	-	tig0024288:29866-29885	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	-	tig0024288:29993-30012	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	+	tig0024288:30065-30084	Msa1415820:CDS	45.0%
	CCTAATAGACCTTTGCAACC+TGG	-	tig0024288:30111-30130	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	+	tig0024288:30108-30127	Msa1415820:CDS	45.0%
	CAACTTTGTAGGGATAGGAG+AGG	+	tig0024288:28010-28029	Msa1415820:five_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	+	tig0024288:28281-28300	Msa1415820:five_prime_UTR	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	-	tig0024288:28850-28869	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	+	tig0024288:29858-29877	Msa1415820:CDS	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	+	tig0024288:29859-29878	Msa1415820:CDS	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	-	tig0024288:29866-29885	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	-	tig0024288:29993-30012	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	+	tig0024288:30065-30084	Msa1415820:CDS	45.0%
	CCTAATAGACCTTTGCAACC+TGG	-	tig0024288:30111-30130	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	+	tig0024288:30108-30127	Msa1415820:CDS	45.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	+	tig0024288:28286-28305	Msa1415820:exon	50.0%
	GACAACAACATAAGGGTCGC+TGG	-	tig0024288:28384-28403	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	+	tig0024288:28552-28571	Msa1415820:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	+	tig0024288:30080-30099	Msa1415820:CDS	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	+	tig0024288:30090-30109	Msa1415820:CDS	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	+	tig0024288:30099-30118	Msa1415820:CDS	50.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	+	tig0024288:28286-28305	Msa1415820:exon	50.0%
	GACAACAACATAAGGGTCGC+TGG	-	tig0024288:28384-28403	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	+	tig0024288:28552-28571	Msa1415820:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	+	tig0024288:30080-30099	Msa1415820:CDS	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	+	tig0024288:30090-30109	Msa1415820:CDS	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	+	tig0024288:30099-30118	Msa1415820:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
tig0024288	gene	27980	30400	27980	ID=Msa1415820;Name=Msa1415820
tig0024288	mRNA	27980	30400	27980	ID=Msa1415820-mRNA-1;Parent=Msa1415820;Name=Msa1415820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=325\|1\|1\|1\|1\|1\|3\|257\|172
tig0024288	exon	27980	28421	27980	ID=Msa1415820-mRNA-1:exon:22616;Parent=Msa1415820-mRNA-1
tig0024288	exon	29435	29530	29435	ID=Msa1415820-mRNA-1:exon:22617;Parent=Msa1415820-mRNA-1
tig0024288	exon	29838	30400	29838	ID=Msa1415820-mRNA-1:exon:22618;Parent=Msa1415820-mRNA-1
tig0024288	five_prime_UTR	27980	28304	27980	ID=Msa1415820-mRNA-1:five_prime_utr;Parent=Msa1415820-mRNA-1
tig0024288	CDS	28305	28421	28305	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	CDS	29435	29530	29435	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	CDS	29838	30143	29838	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	three_prime_UTR	30144	30400	30144	ID=Msa1415820-mRNA-1:three_prime_utr;Parent=Msa1415820-mRNA-1

Gene Sequence

>Msa1415820

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa1415820

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*