AlfalfaGEDB | Msa1415820

M. sativa cultivar zhongmu-4 / Msa1415820

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	sp\|Q9S7J9\|CAR9_ARATH	66.864	169	53	2	1	167	1	168	2.46e-79	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	G7I9Z6	97.093	172	5	0	1	172	1	172	2.79e-117	338

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012260	Msa1415820	0.999058	4.039249e-288	-8.615850e-47
Msa0060970	Msa1415820	0.996233	5.547381e-225	-8.615850e-47
Msa0108850	Msa1415820	0.912877	1.176374e-83	-8.615850e-47
Msa0137660	Msa1415820	-0.826117	3.234889e-54	-8.615850e-47
Msa0151950	Msa1415820	0.910036	2.934563e-82	-8.615850e-47
Msa0182750	Msa1415820	-0.826216	3.063315e-54	-8.615850e-47
Msa0271740	Msa1415820	0.818298	2.108456e-52	-8.615850e-47
Msa0288320	Msa1415820	0.826439	2.710874e-54	-8.615850e-47
Msa0310380	Msa1415820	0.820612	6.257106e-53	-8.615850e-47
Msa0310490	Msa1415820	0.807580	4.715349e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	MtrunA17_Chr1g0160811	97.093	172	5	0	1	172	1	172	5.38e-121	338
Msa1415820	MtrunA17_Chr4g0043861	65.644	163	55	1	4	166	3	164	3.75e-76	225
Msa1415820	MtrunA17_Chr3g0111361	62.346	162	60	1	4	165	3	163	7.17e-74	219
Msa1415820	MtrunA17_Chr2g0280981	58.537	164	67	1	4	167	2	164	4.46e-70	209
Msa1415820	MtrunA17_Chr8g0393081	58.537	164	67	1	4	167	19	181	1.03e-69	209
Msa1415820	MtrunA17_Chr6g0478401	55.488	164	72	1	4	167	15	177	9.72e-65	196
Msa1415820	MtrunA17_Chr8g0352751	43.226	155	86	2	6	159	5	158	3.36e-40	133
Msa1415820	MtrunA17_Chr8g0380381	44.937	158	85	2	5	161	88	244	7.30e-39	132
Msa1415820	MtrunA17_Chr3g0083541	42.949	156	87	2	5	159	242	396	2.98e-34	124
Msa1415820	MtrunA17_Chr2g0292461	42.405	158	89	2	5	161	171	327	4.02e-34	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1415820	AT1G70790.3	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT1G70790.2	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT1G70790.1	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa1415820	AT2G01540.1	60.355	169	64	2	1	167	1	168	6.78e-72	214
Msa1415820	AT1G70810.1	60.736	163	63	1	5	167	4	165	4.15e-70	209
Msa1415820	AT3G17980.1	56.364	165	71	1	3	167	14	177	1.69e-68	206
Msa1415820	AT1G48590.4	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa1415820	AT1G48590.1	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa1415820	AT1G48590.2	56.970	165	69	2	3	167	38	200	6.59e-67	202
Msa1415820	AT1G73580.1	54.545	165	74	1	3	167	5	168	4.74e-66	199

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Find 59 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTGCAACCCTGAG+TGG	0.600340	tig0024288:+29457	Msa1415820:CDS
AAATGGTTGTGCAATCAAGA+GGG	0.626231	tig0024288:+29945	Msa1415820:CDS
AAATGTGATGTAATATATAG+TGG	0.446651	tig0024288:+30294	Msa1415820:three_prime_UTR
AAATGTTGAGAGTGGAGAAT+TGG	0.430897	tig0024288:+30059	Msa1415820:CDS
AAGAATTAACCCTTTCAATA+AGG	0.243737	tig0024288:+29484	Msa1415820:CDS
AAGTCTTATTGTAATATCCA+AGG	0.599466	tig0024288:+30172	Msa1415820:three_prime_UTR
AAGTTGGATACTCTTCCAAA+TGG	0.514104	tig0024288:+29928	Msa1415820:CDS
AAGTTTAAGGAGCTTCTTTG+GGG	0.573694	tig0024288:-28246	None:intergenic
AATTGGTTGTGGAAATTGAG+TGG	0.610176	tig0024288:+30076	Msa1415820:CDS
ACAACTTTATATAATAATTT+AGG	0.187365	tig0024288:-30232	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCATAATCAAATCCGTT+TGG	+	tig0024288:28265-28284	Msa1415820:five_prime_UTR	30.0%
CAATGTTGACAACAACATAA+GGG	-	tig0024288:28391-28410	None:intergenic	30.0%
AGAGAAAAATAGAGAAAGCA+AGG	-	tig0024288:28432-28451	None:intergenic	30.0%
TAGGAATATCCAAAACCTTA+TGG	+	tig0024288:28728-28747	Msa1415820:intron	30.0%
ATATCCAAAACCTTATGGTA+TGG	+	tig0024288:28733-28752	Msa1415820:intron	30.0%
AGTTACCATTTACAAAGCAA+AGG	-	tig0024288:28769-28788	None:intergenic	30.0%
TTAATTCTTCATTCCACTCA+GGG	-	tig0024288:29473-29492	None:intergenic	30.0%
TCTTACATCCCTTATTGAAA+GGG	-	tig0024288:29496-29515	None:intergenic	30.0%
ATTTGTACACATTGAGCATA+TGG	-	tig0024288:29907-29926	None:intergenic	30.0%
TCAATGTGTACAAATGAAGT+TGG	+	tig0024288:29912-29931	Msa1415820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024288	gene	27980	30400	27980	ID=Msa1415820;Name=Msa1415820
tig0024288	mRNA	27980	30400	27980	ID=Msa1415820-mRNA-1;Parent=Msa1415820;Name=Msa1415820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=325\|1\|1\|1\|1\|1\|3\|257\|172
tig0024288	exon	27980	28421	27980	ID=Msa1415820-mRNA-1:exon:22616;Parent=Msa1415820-mRNA-1
tig0024288	exon	29435	29530	29435	ID=Msa1415820-mRNA-1:exon:22617;Parent=Msa1415820-mRNA-1
tig0024288	exon	29838	30400	29838	ID=Msa1415820-mRNA-1:exon:22618;Parent=Msa1415820-mRNA-1
tig0024288	five_prime_UTR	27980	28304	27980	ID=Msa1415820-mRNA-1:five_prime_utr;Parent=Msa1415820-mRNA-1
tig0024288	CDS	28305	28421	28305	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	CDS	29435	29530	29435	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	CDS	29838	30143	29838	ID=Msa1415820-mRNA-1:cds;Parent=Msa1415820-mRNA-1
tig0024288	three_prime_UTR	30144	30400	30144	ID=Msa1415820-mRNA-1:three_prime_utr;Parent=Msa1415820-mRNA-1

Gene Sequence

>Msa1415820

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa1415820

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*