AlfalfaGEDB | Msa0012260

M. sativa cultivar zhongmu-4 / Msa0012260

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012260	sp\|Q9S7J9\|CAR9_ARATH	66.864	169	53	2	1	167	1	168	2.46e-79	236

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012260	Msa0060970	0.995423	4.033000e-216	-8.615850e-47
Msa0012260	Msa0108850	0.912196	2.569603e-83	-8.615850e-47
Msa0012260	Msa0137660	-0.826137	3.199389e-54	-8.615850e-47
Msa0012260	Msa0151950	0.909703	4.246060e-82	-8.615850e-47
Msa0012260	Msa0182750	-0.826335	2.870850e-54	-8.615850e-47
Msa0012260	Msa0271740	0.820277	7.468594e-53	-8.615850e-47
Msa0012260	Msa0288320	0.825064	5.746425e-54	-8.615850e-47
Msa0012260	Msa0310380	0.822509	2.281099e-53	-8.615850e-47
Msa0012260	Msa0310490	0.806420	8.297118e-50	-8.615850e-47
Msa0012260	Msa0312310	0.813371	2.647636e-51	-8.615850e-47
Msa0012260	Msa0324880	0.821879	3.193125e-53	-8.615850e-47
Msa0012260	Msa0370870	0.860171	2.487024e-63	-8.615850e-47
Msa0012260	Msa0419050	0.850835	1.312997e-60	-8.615850e-47
Msa0012260	Msa0431020	0.822242	2.631171e-53	-8.615850e-47
Msa0012260	Msa0508540	0.801047	1.082370e-48	-8.615850e-47
Msa0012260	Msa0510560	0.861380	1.068289e-63	-8.615850e-47
Msa0012260	Msa0873930	0.815113	1.091728e-51	-8.615850e-47
Msa0012260	Msa1368180	0.802885	4.536955e-49	-8.615850e-47
Msa0012260	Msa1372340	0.823749	1.171344e-53	-8.615850e-47
Msa0012260	Msa1385580	0.802785	4.756778e-49	-8.615850e-47
Msa0012260	Msa1415820	0.999058	4.039249e-288	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012260	MtrunA17_Chr1g0160811	97.093	172	5	0	1	172	1	172	5.38e-121	338
Msa0012260	MtrunA17_Chr4g0043861	65.644	163	55	1	4	166	3	164	3.75e-76	225
Msa0012260	MtrunA17_Chr3g0111361	62.346	162	60	1	4	165	3	163	7.17e-74	219
Msa0012260	MtrunA17_Chr2g0280981	58.537	164	67	1	4	167	2	164	4.46e-70	209
Msa0012260	MtrunA17_Chr8g0393081	58.537	164	67	1	4	167	19	181	1.03e-69	209
Msa0012260	MtrunA17_Chr6g0478401	55.488	164	72	1	4	167	15	177	9.72e-65	196
Msa0012260	MtrunA17_Chr8g0352751	43.226	155	86	2	6	159	5	158	3.36e-40	133
Msa0012260	MtrunA17_Chr8g0380381	44.937	158	85	2	5	161	88	244	7.30e-39	132
Msa0012260	MtrunA17_Chr3g0083541	42.949	156	87	2	5	159	242	396	2.98e-34	124
Msa0012260	MtrunA17_Chr2g0292461	42.405	158	89	2	5	161	171	327	4.02e-34	122
Msa0012260	MtrunA17_Chr2g0290631	42.282	149	83	2	6	152	5	152	1.17e-30	109
Msa0012260	MtrunA17_Chr2g0290721	34.118	85	54	2	9	92	3	86	1.23e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0012260	AT1G70790.3	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0012260	AT1G70790.2	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0012260	AT1G70790.1	66.864	169	53	2	1	167	1	168	2.50e-80	236
Msa0012260	AT2G01540.1	60.355	169	64	2	1	167	1	168	6.78e-72	214
Msa0012260	AT1G70810.1	60.736	163	63	1	5	167	4	165	4.15e-70	209
Msa0012260	AT3G17980.1	56.364	165	71	1	3	167	14	177	1.69e-68	206
Msa0012260	AT1G48590.4	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa0012260	AT1G48590.1	56.970	165	69	2	3	167	7	169	5.32e-67	202
Msa0012260	AT1G48590.2	56.970	165	69	2	3	167	38	200	6.59e-67	202
Msa0012260	AT1G73580.1	54.545	165	74	1	3	167	5	168	4.74e-66	199
Msa0012260	AT1G23140.1	56.707	164	70	1	4	167	3	165	4.45e-64	194
Msa0012260	AT1G70790.4	70.769	130	36	1	40	167	2	131	1.68e-63	192
Msa0012260	AT1G66360.1	53.374	163	73	2	4	164	3	164	2.70e-62	190
Msa0012260	AT5G37740.1	51.497	167	77	2	4	167	3	168	5.22e-62	189
Msa0012260	AT1G70800.1	53.374	163	75	1	5	167	13	174	9.31e-61	186
Msa0012260	AT5G37740.2	48.295	176	79	2	4	167	3	178	2.57e-59	182
Msa0012260	AT1G48590.3	44.848	165	57	2	3	167	38	168	1.73e-46	150
Msa0012260	AT4G05330.2	47.436	156	80	2	5	159	143	297	5.81e-39	134
Msa0012260	AT4G21160.2	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0012260	AT4G21160.3	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0012260	AT4G21160.1	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0012260	AT4G21160.4	48.077	156	79	2	5	159	179	333	1.84e-38	134
Msa0012260	AT4G05330.3	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa0012260	AT4G05330.1	47.436	156	80	2	5	159	178	332	2.59e-38	134
Msa0012260	AT5G47710.1	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0012260	AT5G47710.2	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0012260	AT5G47710.3	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0012260	AT5G47710.4	40.625	160	92	2	6	163	5	163	3.40e-35	121
Msa0012260	AT3G07940.1	42.208	154	87	2	5	157	227	379	3.85e-35	126

Find 59 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAACTTTATATAATAATTT+AGG	0.187365	1_1:-18464977	None:intergenic
CCAGGTTGCAAAGGTCTATT+AGG	0.188697	1_1:+18464853	Msa0012260:CDS
ATCCGTTTGGCAAGTCATTT+TGG	0.197413	1_1:+18463023	Msa0012260:five_prime_UTR
CTGAAGAGAGCAGTTGTATT+TGG	0.198293	1_1:+18464740	Msa0012260:CDS
TTTCTCCGTCGACGACAAAA+TGG	0.198849	1_1:+18464603	Msa0012260:CDS
GGATTTGATTATGAAGTTTA+AGG	0.225701	1_1:-18463004	None:intergenic
AAGAATTAACCCTTTCAATA+AGG	0.243737	1_1:+18464229	Msa0012260:CDS
TGAAGTTTAAGGAGCTTCTT+TGG	0.258075	1_1:-18462993	None:intergenic
TCAATCTTAGAATCATTTCT+TGG	0.308077	1_1:-18464780	None:intergenic
ATTTGTACACATTGAGCATA+TGG	0.352534	1_1:-18464649	None:intergenic
AGAATTAACCCTTTCAATAA+GGG	0.363219	1_1:+18464230	Msa0012260:CDS
TTGCGATCTAGCAACTTTGT+AGG	0.368798	1_1:+18462744	Msa0012260:five_prime_UTR
GAAGTTTAAGGAGCTTCTTT+GGG	0.377034	1_1:-18462992	None:intergenic
ATTGAGTGGGTGGATGTTCC+AGG	0.378200	1_1:+18464835	Msa0012260:CDS
GGCATGGATAATAATGTTCT+TGG	0.394699	1_1:+18463047	Msa0012260:exon
CTCTTGATTGCACAACCATT+TGG	0.400401	1_1:-18464688	None:intergenic
TCAAGAGGGTTCAAGCAAAT+AGG	0.403301	1_1:+18464704	Msa0012260:CDS
ACTTCATAATCAAATCCGTT+TGG	0.419897	1_1:+18463010	Msa0012260:five_prime_UTR
TTCTCCGTCGACGACAAAAT+GGG	0.428457	1_1:+18464604	Msa0012260:CDS
CTAAAACTTCGTATTAAAAG+AGG	0.428755	1_1:+18463074	Msa0012260:CDS
TGTCAACATTGGTCATGAAC+AGG	0.430334	1_1:+18463145	Msa0012260:CDS
AAATGTTGAGAGTGGAGAAT+TGG	0.430897	1_1:+18464804	Msa0012260:CDS
CCAATGTTGACAACAACATA+AGG	0.434516	1_1:-18463134	None:intergenic
CAGGTTGCAAAGGTCTATTA+GGG	0.446108	1_1:+18464854	Msa0012260:CDS
AAATGTGATGTAATATATAG+TGG	0.446651	1_1:+18465039	Msa0012260:three_prime_UTR
CTCTTACATCCCTTATTGAA+AGG	0.451223	1_1:-18464239	None:intergenic
TAGTCATTTGATTCATGCAT+TGG	0.459891	1_1:-18464941	None:intergenic
TGCGATCTAGCAACTTTGTA+GGG	0.468752	1_1:+18462745	Msa0012260:five_prime_UTR
TTGATTCATGCATTGGACCT+TGG	0.481199	1_1:-18464934	None:intergenic
ATCTTAGAATCATTTCTTGG+AGG	0.484585	1_1:-18464777	None:intergenic
CCTAATAGACCTTTGCAACC+TGG	0.491322	1_1:-18464853	None:intergenic
TCTTACATCCCTTATTGAAA+GGG	0.497303	1_1:-18464238	None:intergenic
CTCCAAAATGACTTGCCAAA+CGG	0.499213	1_1:-18463025	None:intergenic
TGTAAGAGTTCCAATACGTC+TGG	0.504818	1_1:+18464254	Msa0012260:CDS
GTTAATTCTTCATTCCACTC+AGG	0.513309	1_1:-18464216	None:intergenic
AAGTTGGATACTCTTCCAAA+TGG	0.514104	1_1:+18464673	Msa0012260:CDS
TTAATTCTTCATTCCACTCA+GGG	0.514723	1_1:-18464215	None:intergenic
CCTTATGTTGTTGTCAACAT+TGG	0.522538	1_1:+18463134	Msa0012260:CDS
CAATGTTGACAACAACATAA+GGG	0.538879	1_1:-18463133	None:intergenic
AGATTGAGAAATGTTGAGAG+TGG	0.545029	1_1:+18464796	Msa0012260:CDS
TGAGAGTGGAGAATTGGTTG+TGG	0.553380	1_1:+18464810	Msa0012260:CDS
GTGGATGTTCCAGGTTGCAA+AGG	0.560781	1_1:+18464844	Msa0012260:CDS
GACAACAACATAAGGGTCGC+TGG	0.561798	1_1:-18463126	None:intergenic
CAAATGGTTGTGCAATCAAG+AGG	0.565429	1_1:+18464689	Msa0012260:CDS
AAGTTTAAGGAGCTTCTTTG+GGG	0.573694	1_1:-18462991	None:intergenic
TCTAGCAACTTTGTAGGGAT+AGG	0.576005	1_1:+18462750	Msa0012260:five_prime_UTR
TCAATGTGTACAAATGAAGT+TGG	0.578075	1_1:+18464657	Msa0012260:CDS
AAGTCTTATTGTAATATCCA+AGG	0.599466	1_1:+18464917	Msa0012260:three_prime_UTR
AAAACAATTGCAACCCTGAG+TGG	0.600340	1_1:+18464202	Msa0012260:CDS
AATTGGTTGTGGAAATTGAG+TGG	0.610176	1_1:+18464821	Msa0012260:CDS
GGTTGTGGAAATTGAGTGGG+TGG	0.614075	1_1:+18464825	Msa0012260:CDS
ATTGGTTGTGGAAATTGAGT+GGG	0.621207	1_1:+18464822	Msa0012260:CDS
AAATGGTTGTGCAATCAAGA+GGG	0.626231	1_1:+18464690	Msa0012260:CDS
TGCCAAAACAAAATTGAGGT+CGG	0.639420	1_1:+18462823	Msa0012260:five_prime_UTR
TACCTGCCAAAACAAAATTG+AGG	0.651981	1_1:+18462819	Msa0012260:five_prime_UTR
TACAACTGCTCTCTTCAGCA+AGG	0.655573	1_1:-18464735	None:intergenic
CAACTTTGTAGGGATAGGAG+AGG	0.686770	1_1:+18462755	Msa0012260:five_prime_UTR
AGGTTGCAAAGGTCTATTAG+GGG	0.692342	1_1:+18464855	Msa0012260:CDS
AGTTTAAGGAGCTTCTTTGG+GGG	0.694941	1_1:-18462990	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAAAAAAAAAATTTTACG+AGG	+	chr1_1:18463775-18463794	Msa0012260:intron	10.0%
!!!	TTTTAAGTTAAAATCAATTA+CGG	+	chr1_1:18464040-18464059	Msa0012260:intron	10.0%
!!	TGAGAAATTATTATTAATAA+CGG	+	chr1_1:18464419-18464438	Msa0012260:intron	10.0%
!!	ACAACTTTATATAATAATTT+AGG	-	chr1_1:18464980-18464999	None:intergenic	10.0%
!!!	AAAAAAAAAAAAATTTTACG+AGG	+	chr1_1:18463775-18463794	Msa0012260:intron	10.0%
!!!	TTTTAAGTTAAAATCAATTA+CGG	+	chr1_1:18464040-18464059	Msa0012260:intron	10.0%
!!	TGAGAAATTATTATTAATAA+CGG	+	chr1_1:18464419-18464438	Msa0012260:intron	10.0%
!!	ACAACTTTATATAATAATTT+AGG	-	chr1_1:18464980-18464999	None:intergenic	10.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	-	chr1_1:18462895-18462914	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTAGACTC+AGG	-	chr1_1:18463768-18463787	None:intergenic	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	-	chr1_1:18463849-18463868	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	-	chr1_1:18463850-18463869	None:intergenic	15.0%
!!!	ATTATGTTATTTTAATGCTT+TGG	-	chr1_1:18462895-18462914	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTAGACTC+AGG	-	chr1_1:18463768-18463787	None:intergenic	15.0%
!!	CAATTCATATGTATAAAAAA+GGG	-	chr1_1:18463849-18463868	None:intergenic	15.0%
!!	ACAATTCATATGTATAAAAA+AGG	-	chr1_1:18463850-18463869	None:intergenic	15.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	-	chr1_1:18463319-18463338	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	+	chr1_1:18463435-18463454	Msa0012260:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	+	chr1_1:18463696-18463715	Msa0012260:intron	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	+	chr1_1:18463869-18463888	Msa0012260:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	+	chr1_1:18463973-18463992	Msa0012260:intron	20.0%
!!	AAATGTGATGTAATATATAG+TGG	+	chr1_1:18465039-18465058	Msa0012260:three_prime_UTR	20.0%
!!!	AATTCTTTTGACAAAATTAC+CGG	-	chr1_1:18463319-18463338	None:intergenic	20.0%
!!	GTTATGCAAAATTATGTTAT+TGG	+	chr1_1:18463435-18463454	Msa0012260:intron	20.0%
!!!	ATACTATGAATTGATTTTAC+AGG	+	chr1_1:18463696-18463715	Msa0012260:intron	20.0%
!!!	TGTGTTTTATAATTGAAGTT+TGG	+	chr1_1:18463869-18463888	Msa0012260:intron	20.0%
!!	TAAACTGAACAATAAATTTG+AGG	+	chr1_1:18463973-18463992	Msa0012260:intron	20.0%
!!	AAATGTGATGTAATATATAG+TGG	+	chr1_1:18465039-18465058	Msa0012260:three_prime_UTR	20.0%
!	GGATTTGATTATGAAGTTTA+AGG	-	chr1_1:18463007-18463026	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	+	chr1_1:18463074-18463093	Msa0012260:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	-	chr1_1:18463318-18463337	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	-	chr1_1:18463544-18463563	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	-	chr1_1:18463744-18463763	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	-	chr1_1:18463808-18463827	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	+	chr1_1:18463872-18463891	Msa0012260:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	+	chr1_1:18463924-18463943	Msa0012260:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	+	chr1_1:18464229-18464248	Msa0012260:CDS	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	+	chr1_1:18464230-18464249	Msa0012260:CDS	25.0%
!!	ATCATTTTACAACCATTTTG+TGG	+	chr1_1:18464455-18464474	Msa0012260:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	-	chr1_1:18464783-18464802	None:intergenic	25.0%
!!!	AAGTCTTATTGTAATATCCA+AGG	+	chr1_1:18464917-18464936	Msa0012260:three_prime_UTR	25.0%
!	GGATTTGATTATGAAGTTTA+AGG	-	chr1_1:18463007-18463026	None:intergenic	25.0%
!	CTAAAACTTCGTATTAAAAG+AGG	+	chr1_1:18463074-18463093	Msa0012260:CDS	25.0%
!!	ATTCTTTTGACAAAATTACC+GGG	-	chr1_1:18463318-18463337	None:intergenic	25.0%
!	ATCTGTATTGAATTTACTCT+TGG	-	chr1_1:18463544-18463563	None:intergenic	25.0%
!!	AATTTACAACCTTTCGTTTT+TGG	-	chr1_1:18463744-18463763	None:intergenic	25.0%
!!	TTTGCAAATATCAAGAGTTT+TGG	-	chr1_1:18463808-18463827	None:intergenic	25.0%
!!	GTTTTATAATTGAAGTTTGG+TGG	+	chr1_1:18463872-18463891	Msa0012260:intron	25.0%
!	TGGTTATGCAATAACAAAAA+TGG	+	chr1_1:18463924-18463943	Msa0012260:intron	25.0%
!	AAGAATTAACCCTTTCAATA+AGG	+	chr1_1:18464229-18464248	Msa0012260:CDS	25.0%
!	AGAATTAACCCTTTCAATAA+GGG	+	chr1_1:18464230-18464249	Msa0012260:CDS	25.0%
!!	ATCATTTTACAACCATTTTG+TGG	+	chr1_1:18464455-18464474	Msa0012260:intron	25.0%
!	TCAATCTTAGAATCATTTCT+TGG	-	chr1_1:18464783-18464802	None:intergenic	25.0%
!!!	AAGTCTTATTGTAATATCCA+AGG	+	chr1_1:18464917-18464936	Msa0012260:three_prime_UTR	25.0%
	ACTTCATAATCAAATCCGTT+TGG	+	chr1_1:18463010-18463029	Msa0012260:five_prime_UTR	30.0%
	CAATGTTGACAACAACATAA+GGG	-	chr1_1:18463136-18463155	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	-	chr1_1:18463177-18463196	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	+	chr1_1:18463178-18463197	Msa0012260:intron	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	+	chr1_1:18463454-18463473	Msa0012260:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	+	chr1_1:18463473-18463492	Msa0012260:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	+	chr1_1:18463478-18463497	Msa0012260:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	+	chr1_1:18463506-18463525	Msa0012260:intron	30.0%
	AGTTACCATTTACAAAGCAA+AGG	-	chr1_1:18463514-18463533	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	+	chr1_1:18463577-18463596	Msa0012260:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	+	chr1_1:18463661-18463680	Msa0012260:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	+	chr1_1:18463662-18463681	Msa0012260:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	-	chr1_1:18463676-18463695	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	-	chr1_1:18464218-18464237	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	-	chr1_1:18464241-18464260	None:intergenic	30.0%
!	AATCTGAAATCTCCACAAAA+TGG	-	chr1_1:18464470-18464489	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	-	chr1_1:18464652-18464671	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	+	chr1_1:18464657-18464676	Msa0012260:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	+	chr1_1:18464748-18464767	Msa0012260:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	-	chr1_1:18464780-18464799	None:intergenic	30.0%
	TAGTCATTTGATTCATGCAT+TGG	-	chr1_1:18464944-18464963	None:intergenic	30.0%
	ACTTCATAATCAAATCCGTT+TGG	+	chr1_1:18463010-18463029	Msa0012260:five_prime_UTR	30.0%
	CAATGTTGACAACAACATAA+GGG	-	chr1_1:18463136-18463155	None:intergenic	30.0%
	AGAGAAAAATAGAGAAAGCA+AGG	-	chr1_1:18463177-18463196	None:intergenic	30.0%
!!	GCTTTCTCTATTTTTCTCTA+AGG	+	chr1_1:18463178-18463197	Msa0012260:intron	30.0%
!	TTGGTGATATTGTTAAGAGT+AGG	+	chr1_1:18463454-18463473	Msa0012260:intron	30.0%
	TAGGAATATCCAAAACCTTA+TGG	+	chr1_1:18463473-18463492	Msa0012260:intron	30.0%
	ATATCCAAAACCTTATGGTA+TGG	+	chr1_1:18463478-18463497	Msa0012260:intron	30.0%
!	CTTTTCCTTTGCTTTGTAAA+TGG	+	chr1_1:18463506-18463525	Msa0012260:intron	30.0%
	AGTTACCATTTACAAAGCAA+AGG	-	chr1_1:18463514-18463533	None:intergenic	30.0%
!	TTGTCATCACATATTCCTTT+TGG	+	chr1_1:18463577-18463596	Msa0012260:intron	30.0%
!!	TCATTTTAGTCACCATTTTG+AGG	+	chr1_1:18463661-18463680	Msa0012260:intron	30.0%
!!	CATTTTAGTCACCATTTTGA+GGG	+	chr1_1:18463662-18463681	Msa0012260:intron	30.0%
!!	TTGATTTTAGTCCCTCAAAA+TGG	-	chr1_1:18463676-18463695	None:intergenic	30.0%
	TTAATTCTTCATTCCACTCA+GGG	-	chr1_1:18464218-18464237	None:intergenic	30.0%
	TCTTACATCCCTTATTGAAA+GGG	-	chr1_1:18464241-18464260	None:intergenic	30.0%
!	AATCTGAAATCTCCACAAAA+TGG	-	chr1_1:18464470-18464489	None:intergenic	30.0%
	ATTTGTACACATTGAGCATA+TGG	-	chr1_1:18464652-18464671	None:intergenic	30.0%
	TCAATGTGTACAAATGAAGT+TGG	+	chr1_1:18464657-18464676	Msa0012260:CDS	30.0%
	AGCAGTTGTATTTGGAAAAA+TGG	+	chr1_1:18464748-18464767	Msa0012260:CDS	30.0%
	ATCTTAGAATCATTTCTTGG+AGG	-	chr1_1:18464780-18464799	None:intergenic	30.0%
	TAGTCATTTGATTCATGCAT+TGG	-	chr1_1:18464944-18464963	None:intergenic	30.0%
	TACCTGCCAAAACAAAATTG+AGG	+	chr1_1:18462819-18462838	Msa0012260:five_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	+	chr1_1:18462823-18462842	Msa0012260:five_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	-	chr1_1:18462828-18462847	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	-	chr1_1:18462994-18463013	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	-	chr1_1:18462995-18463014	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	-	chr1_1:18462996-18463015	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	+	chr1_1:18463047-18463066	Msa0012260:exon	35.0%
	CCAATGTTGACAACAACATA+AGG	-	chr1_1:18463137-18463156	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	+	chr1_1:18463134-18463153	Msa0012260:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	+	chr1_1:18463372-18463391	Msa0012260:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	-	chr1_1:18463485-18463504	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	-	chr1_1:18463491-18463510	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	+	chr1_1:18463584-18463603	Msa0012260:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	+	chr1_1:18463732-18463751	Msa0012260:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	+	chr1_1:18463904-18463923	Msa0012260:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	-	chr1_1:18464219-18464238	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	-	chr1_1:18464242-18464261	None:intergenic	35.0%
!	GTTTTACTTACCAGACGTAT+TGG	-	chr1_1:18464267-18464286	None:intergenic	35.0%
	GTAATGCATGCTAAGTTAGA+TGG	-	chr1_1:18464295-18464314	None:intergenic	35.0%
!!	TTTTTGTTTCTTTCCGCAGA+CGG	+	chr1_1:18464564-18464583	Msa0012260:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	+	chr1_1:18464673-18464692	Msa0012260:CDS	35.0%
	AAATGGTTGTGCAATCAAGA+GGG	+	chr1_1:18464690-18464709	Msa0012260:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	+	chr1_1:18464796-18464815	Msa0012260:CDS	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	+	chr1_1:18464804-18464823	Msa0012260:CDS	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	+	chr1_1:18464821-18464840	Msa0012260:CDS	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	+	chr1_1:18464822-18464841	Msa0012260:CDS	35.0%
	TACCTGCCAAAACAAAATTG+AGG	+	chr1_1:18462819-18462838	Msa0012260:five_prime_UTR	35.0%
	TGCCAAAACAAAATTGAGGT+CGG	+	chr1_1:18462823-18462842	Msa0012260:five_prime_UTR	35.0%
!!	TACCGACCTCAATTTTGTTT+TGG	-	chr1_1:18462828-18462847	None:intergenic	35.0%
	AAGTTTAAGGAGCTTCTTTG+GGG	-	chr1_1:18462994-18463013	None:intergenic	35.0%
	GAAGTTTAAGGAGCTTCTTT+GGG	-	chr1_1:18462995-18463014	None:intergenic	35.0%
	TGAAGTTTAAGGAGCTTCTT+TGG	-	chr1_1:18462996-18463015	None:intergenic	35.0%
	GGCATGGATAATAATGTTCT+TGG	+	chr1_1:18463047-18463066	Msa0012260:exon	35.0%
	CCAATGTTGACAACAACATA+AGG	-	chr1_1:18463137-18463156	None:intergenic	35.0%
	CCTTATGTTGTTGTCAACAT+TGG	+	chr1_1:18463134-18463153	Msa0012260:CDS	35.0%
	TCATGATTCCGTCAAAATCA+CGG	+	chr1_1:18463372-18463391	Msa0012260:intron	35.0%
!	TGAACCATACCATAAGGTTT+TGG	-	chr1_1:18463485-18463504	None:intergenic	35.0%
	AAAAGCTGAACCATACCATA+AGG	-	chr1_1:18463491-18463510	None:intergenic	35.0%
!!	CACATATTCCTTTTGGTCTT+TGG	+	chr1_1:18463584-18463603	Msa0012260:intron	35.0%
	GAACAAAGACCAAAAACGAA+AGG	+	chr1_1:18463732-18463751	Msa0012260:intron	35.0%
	TAATGGTTCGTATGTGTGTT+TGG	+	chr1_1:18463904-18463923	Msa0012260:intron	35.0%
	GTTAATTCTTCATTCCACTC+AGG	-	chr1_1:18464219-18464238	None:intergenic	35.0%
	CTCTTACATCCCTTATTGAA+AGG	-	chr1_1:18464242-18464261	None:intergenic	35.0%
!	GTTTTACTTACCAGACGTAT+TGG	-	chr1_1:18464267-18464286	None:intergenic	35.0%
	GTAATGCATGCTAAGTTAGA+TGG	-	chr1_1:18464295-18464314	None:intergenic	35.0%
!!	TTTTTGTTTCTTTCCGCAGA+CGG	+	chr1_1:18464564-18464583	Msa0012260:intron	35.0%
	AAGTTGGATACTCTTCCAAA+TGG	+	chr1_1:18464673-18464692	Msa0012260:CDS	35.0%
	AAATGGTTGTGCAATCAAGA+GGG	+	chr1_1:18464690-18464709	Msa0012260:CDS	35.0%
	AGATTGAGAAATGTTGAGAG+TGG	+	chr1_1:18464796-18464815	Msa0012260:CDS	35.0%
	AAATGTTGAGAGTGGAGAAT+TGG	+	chr1_1:18464804-18464823	Msa0012260:CDS	35.0%
	AATTGGTTGTGGAAATTGAG+TGG	+	chr1_1:18464821-18464840	Msa0012260:CDS	35.0%
	ATTGGTTGTGGAAATTGAGT+GGG	+	chr1_1:18464822-18464841	Msa0012260:CDS	35.0%
	TTGCGATCTAGCAACTTTGT+AGG	+	chr1_1:18462744-18462763	Msa0012260:five_prime_UTR	40.0%
	TGCGATCTAGCAACTTTGTA+GGG	+	chr1_1:18462745-18462764	Msa0012260:five_prime_UTR	40.0%
	TCTAGCAACTTTGTAGGGAT+AGG	+	chr1_1:18462750-18462769	Msa0012260:five_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	-	chr1_1:18462824-18462843	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	-	chr1_1:18462993-18463012	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	+	chr1_1:18463023-18463042	Msa0012260:five_prime_UTR	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	-	chr1_1:18463028-18463047	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	+	chr1_1:18463145-18463164	Msa0012260:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	+	chr1_1:18463373-18463392	Msa0012260:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	+	chr1_1:18463374-18463393	Msa0012260:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	-	chr1_1:18463383-18463402	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	+	chr1_1:18463887-18463906	Msa0012260:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	+	chr1_1:18464202-18464221	Msa0012260:CDS	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	+	chr1_1:18464254-18464273	Msa0012260:CDS	40.0%
	TCTTTGTCAAAAACCGTCTG+CGG	-	chr1_1:18464580-18464599	None:intergenic	40.0%
	CTCTTGATTGCACAACCATT+TGG	-	chr1_1:18464691-18464710	None:intergenic	40.0%
	CAAATGGTTGTGCAATCAAG+AGG	+	chr1_1:18464689-18464708	Msa0012260:CDS	40.0%
	TCAAGAGGGTTCAAGCAAAT+AGG	+	chr1_1:18464704-18464723	Msa0012260:CDS	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	+	chr1_1:18464740-18464759	Msa0012260:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	+	chr1_1:18464854-18464873	Msa0012260:CDS	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	+	chr1_1:18464855-18464874	Msa0012260:CDS	40.0%
	TTGATTCATGCATTGGACCT+TGG	-	chr1_1:18464937-18464956	None:intergenic	40.0%
	TTGCGATCTAGCAACTTTGT+AGG	+	chr1_1:18462744-18462763	Msa0012260:five_prime_UTR	40.0%
	TGCGATCTAGCAACTTTGTA+GGG	+	chr1_1:18462745-18462764	Msa0012260:five_prime_UTR	40.0%
	TCTAGCAACTTTGTAGGGAT+AGG	+	chr1_1:18462750-18462769	Msa0012260:five_prime_UTR	40.0%
!!!	GACCTCAATTTTGTTTTGGC+AGG	-	chr1_1:18462824-18462843	None:intergenic	40.0%
	AGTTTAAGGAGCTTCTTTGG+GGG	-	chr1_1:18462993-18463012	None:intergenic	40.0%
!	ATCCGTTTGGCAAGTCATTT+TGG	+	chr1_1:18463023-18463042	Msa0012260:five_prime_UTR	40.0%
!	CTCCAAAATGACTTGCCAAA+CGG	-	chr1_1:18463028-18463047	None:intergenic	40.0%
	TGTCAACATTGGTCATGAAC+AGG	+	chr1_1:18463145-18463164	Msa0012260:CDS	40.0%
	CATGATTCCGTCAAAATCAC+GGG	+	chr1_1:18463373-18463392	Msa0012260:intron	40.0%
	ATGATTCCGTCAAAATCACG+GGG	+	chr1_1:18463374-18463393	Msa0012260:intron	40.0%
!	CAAAAACCCCGTGATTTTGA+CGG	-	chr1_1:18463383-18463402	None:intergenic	40.0%
!	TTTGGTGGCAACACACATAA+TGG	+	chr1_1:18463887-18463906	Msa0012260:intron	40.0%
	AAAACAATTGCAACCCTGAG+TGG	+	chr1_1:18464202-18464221	Msa0012260:CDS	40.0%
	TGTAAGAGTTCCAATACGTC+TGG	+	chr1_1:18464254-18464273	Msa0012260:CDS	40.0%
	TCTTTGTCAAAAACCGTCTG+CGG	-	chr1_1:18464580-18464599	None:intergenic	40.0%
	CTCTTGATTGCACAACCATT+TGG	-	chr1_1:18464691-18464710	None:intergenic	40.0%
	CAAATGGTTGTGCAATCAAG+AGG	+	chr1_1:18464689-18464708	Msa0012260:CDS	40.0%
	TCAAGAGGGTTCAAGCAAAT+AGG	+	chr1_1:18464704-18464723	Msa0012260:CDS	40.0%
	CTGAAGAGAGCAGTTGTATT+TGG	+	chr1_1:18464740-18464759	Msa0012260:CDS	40.0%
	CAGGTTGCAAAGGTCTATTA+GGG	+	chr1_1:18464854-18464873	Msa0012260:CDS	40.0%
	AGGTTGCAAAGGTCTATTAG+GGG	+	chr1_1:18464855-18464874	Msa0012260:CDS	40.0%
	TTGATTCATGCATTGGACCT+TGG	-	chr1_1:18464937-18464956	None:intergenic	40.0%
	CAACTTTGTAGGGATAGGAG+AGG	+	chr1_1:18462755-18462774	Msa0012260:five_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	+	chr1_1:18463026-18463045	Msa0012260:five_prime_UTR	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	-	chr1_1:18463595-18463614	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	+	chr1_1:18464603-18464622	Msa0012260:CDS	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	+	chr1_1:18464604-18464623	Msa0012260:CDS	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	-	chr1_1:18464611-18464630	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	-	chr1_1:18464738-18464757	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	+	chr1_1:18464810-18464829	Msa0012260:CDS	45.0%
	CCTAATAGACCTTTGCAACC+TGG	-	chr1_1:18464856-18464875	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	+	chr1_1:18464853-18464872	Msa0012260:CDS	45.0%
	CAACTTTGTAGGGATAGGAG+AGG	+	chr1_1:18462755-18462774	Msa0012260:five_prime_UTR	45.0%
!!	CGTTTGGCAAGTCATTTTGG+AGG	+	chr1_1:18463026-18463045	Msa0012260:five_prime_UTR	45.0%
	ACAGAACGCCAAAGACCAAA+AGG	-	chr1_1:18463595-18463614	None:intergenic	45.0%
	TTTCTCCGTCGACGACAAAA+TGG	+	chr1_1:18464603-18464622	Msa0012260:CDS	45.0%
	TTCTCCGTCGACGACAAAAT+GGG	+	chr1_1:18464604-18464623	Msa0012260:CDS	45.0%
!	ATCACCCATTTTGTCGTCGA+CGG	-	chr1_1:18464611-18464630	None:intergenic	45.0%
	TACAACTGCTCTCTTCAGCA+AGG	-	chr1_1:18464738-18464757	None:intergenic	45.0%
	TGAGAGTGGAGAATTGGTTG+TGG	+	chr1_1:18464810-18464829	Msa0012260:CDS	45.0%
	CCTAATAGACCTTTGCAACC+TGG	-	chr1_1:18464856-18464875	None:intergenic	45.0%
	CCAGGTTGCAAAGGTCTATT+AGG	+	chr1_1:18464853-18464872	Msa0012260:CDS	45.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	+	chr1_1:18463031-18463050	Msa0012260:exon	50.0%
	GACAACAACATAAGGGTCGC+TGG	-	chr1_1:18463129-18463148	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	+	chr1_1:18463297-18463316	Msa0012260:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	+	chr1_1:18464825-18464844	Msa0012260:CDS	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	+	chr1_1:18464835-18464854	Msa0012260:CDS	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	+	chr1_1:18464844-18464863	Msa0012260:CDS	50.0%
!!	GGCAAGTCATTTTGGAGGCA+TGG	+	chr1_1:18463031-18463050	Msa0012260:exon	50.0%
	GACAACAACATAAGGGTCGC+TGG	-	chr1_1:18463129-18463148	None:intergenic	50.0%
	TTGCAGAATCATCGTGTGCC+CGG	+	chr1_1:18463297-18463316	Msa0012260:intron	50.0%
	GGTTGTGGAAATTGAGTGGG+TGG	+	chr1_1:18464825-18464844	Msa0012260:CDS	50.0%
	ATTGAGTGGGTGGATGTTCC+AGG	+	chr1_1:18464835-18464854	Msa0012260:CDS	50.0%
	GTGGATGTTCCAGGTTGCAA+AGG	+	chr1_1:18464844-18464863	Msa0012260:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	18462725	18465145	18462725	ID=Msa0012260;Name=Msa0012260
chr1_1	mRNA	18462725	18465145	18462725	ID=Msa0012260-mRNA-1;Parent=Msa0012260;Name=Msa0012260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=325\|1\|1\|1\|1\|1\|3\|257\|172
chr1_1	exon	18462725	18463166	18462725	ID=Msa0012260-mRNA-1:exon:6744;Parent=Msa0012260-mRNA-1
chr1_1	exon	18464180	18464275	18464180	ID=Msa0012260-mRNA-1:exon:6745;Parent=Msa0012260-mRNA-1
chr1_1	exon	18464583	18465145	18464583	ID=Msa0012260-mRNA-1:exon:6746;Parent=Msa0012260-mRNA-1
chr1_1	five_prime_UTR	18462725	18463049	18462725	ID=Msa0012260-mRNA-1:five_prime_utr;Parent=Msa0012260-mRNA-1
chr1_1	CDS	18463050	18463166	18463050	ID=Msa0012260-mRNA-1:cds;Parent=Msa0012260-mRNA-1
chr1_1	CDS	18464180	18464275	18464180	ID=Msa0012260-mRNA-1:cds;Parent=Msa0012260-mRNA-1
chr1_1	CDS	18464583	18464888	18464583	ID=Msa0012260-mRNA-1:cds;Parent=Msa0012260-mRNA-1
chr1_1	three_prime_UTR	18464889	18465145	18464889	ID=Msa0012260-mRNA-1:three_prime_utr;Parent=Msa0012260-mRNA-1

Gene Sequence

>Msa0012260

ATGGATAATAATGTTCTTGGTCTTCTAAAACTTCGTATTAAAAGAGGTATTAATCTTGCAATTCGTGATTCTAATTCCAGCGACCCTTATGTTGTTGTCAACATTGGTCATGAACAGAAGTTGAAGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAATTAACCCTTTCAATAAGGGATGTAAGAGTTCCAATACGTCTGACGGTTTTTGACAAAGACACTTTCTCCGTCGACGACAAAATGGGTGATGCAGAAATAGACTTGAAACCATATGCTCAATGTGTACAAATGAAGTTGGATACTCTTCCAAATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAACTGCCTTGCTGAAGAGAGCAGTTGTATTTGGAAAAATGGAAAAGTCCTCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGAGAATTGGTTGTGGAAATTGAGTGGGTGGATGTTCCAGGTTGCAAAGGTCTATTAGGGGCACAAATATAA

Protein sequence

>Msa0012260

MDNNVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPIRLTVFDKDTFSVDDKMGDAEIDLKPYAQCVQMKLDTLPNGCAIKRVQANRTNCLAEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGLLGAQI*