Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195340 | XP_003594504.2 | 98.214 | 504 | 8 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1010 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195340 | sp|Q9M0V4|YAO_ARATH | 54.455 | 505 | 197 | 8 | 10 | 503 | 22 | 504 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195340 | G7IJV2 | 98.214 | 504 | 8 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1010 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0195340 | 0.809697 | 1.664359e-50 | -8.615850e-47 |
| Msa0164770 | Msa0195340 | 0.801119 | 1.046633e-48 | -8.615850e-47 |
| Msa0184200 | Msa0195340 | 0.994116 | 1.086661e-204 | -8.615850e-47 |
| Msa0195340 | Msa0278910 | 0.804695 | 1.909328e-49 | -8.615850e-47 |
| Msa0195340 | Msa0297630 | 0.812310 | 4.520287e-51 | -8.615850e-47 |
| Msa0195340 | Msa0485510 | 0.856858 | 2.420378e-62 | -8.615850e-47 |
| Msa0195340 | Msa0573140 | 0.810491 | 1.122920e-50 | -8.615850e-47 |
| Msa0195340 | Msa0648780 | 0.821161 | 4.678459e-53 | -8.615850e-47 |
| Msa0195340 | Msa1012740 | 0.801190 | 1.012016e-48 | -8.615850e-47 |
| Msa0195340 | Msa1012770 | 0.801926 | 7.149234e-49 | -8.615850e-47 |
| Msa0195340 | Msa1066190 | 0.807823 | 4.188110e-50 | -8.615850e-47 |
| Msa0195340 | Msa1153060 | 0.823022 | 1.732490e-53 | -8.615850e-47 |
| Msa0195340 | Msa1209850 | 0.808958 | 2.398167e-50 | -8.615850e-47 |
| Msa0195340 | Msa1225720 | 0.827625 | 1.410943e-54 | -8.615850e-47 |
| Msa0195340 | Msa1258390 | 0.834992 | 2.174131e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195340 | MtrunA17_Chr2g0292301 | 98.214 | 504 | 8 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1010 |
| Msa0195340 | MtrunA17_Chr8g0392701 | 26.697 | 221 | 138 | 4 | 144 | 359 | 59 | 260 | 3.89e-16 | 79.7 |
| Msa0195340 | MtrunA17_Chr1g0176241 | 33.607 | 122 | 80 | 1 | 199 | 319 | 360 | 481 | 1.62e-15 | 79.0 |
| Msa0195340 | MtrunA17_Chr4g0059031 | 33.514 | 185 | 94 | 7 | 151 | 325 | 63 | 228 | 7.35e-15 | 77.8 |
| Msa0195340 | MtrunA17_Chr3g0093681 | 29.545 | 176 | 101 | 5 | 147 | 319 | 397 | 552 | 3.25e-14 | 75.1 |
| Msa0195340 | MtrunA17_Chr1g0172501 | 29.545 | 176 | 101 | 5 | 147 | 319 | 397 | 552 | 9.76e-14 | 73.6 |
| Msa0195340 | MtrunA17_Chr2g0295791 | 25.114 | 219 | 143 | 3 | 143 | 359 | 207 | 406 | 7.07e-13 | 70.9 |
| Msa0195340 | MtrunA17_Chr5g0401671 | 26.724 | 232 | 161 | 6 | 144 | 371 | 243 | 469 | 8.87e-13 | 70.9 |
| Msa0195340 | MtrunA17_Chr7g0246741 | 29.375 | 160 | 94 | 3 | 141 | 299 | 404 | 545 | 1.81e-12 | 70.1 |
| Msa0195340 | MtrunA17_Chr4g0053651 | 21.914 | 324 | 209 | 7 | 147 | 442 | 229 | 536 | 2.59e-12 | 69.3 |
| Msa0195340 | MtrunA17_Chr4g0067151 | 22.845 | 232 | 151 | 6 | 147 | 370 | 77 | 288 | 6.46e-12 | 66.6 |
| Msa0195340 | MtrunA17_Chr4g0067151 | 24.891 | 229 | 144 | 7 | 142 | 359 | 21 | 232 | 3.53e-11 | 64.7 |
| Msa0195340 | MtrunA17_Chr1g0200901 | 30.588 | 170 | 113 | 4 | 206 | 371 | 77 | 245 | 7.23e-12 | 67.4 |
| Msa0195340 | MtrunA17_Chr4g0069701 | 26.404 | 178 | 117 | 4 | 196 | 359 | 516 | 693 | 8.37e-12 | 67.8 |
| Msa0195340 | MtrunA17_Chr4g0069701 | 27.848 | 158 | 94 | 4 | 169 | 325 | 85 | 223 | 1.98e-11 | 66.6 |
| Msa0195340 | MtrunA17_Chr1g0185501 | 21.795 | 234 | 157 | 5 | 144 | 370 | 65 | 279 | 9.42e-12 | 66.2 |
| Msa0195340 | MtrunA17_Chr4g0058091 | 22.944 | 231 | 163 | 5 | 224 | 441 | 245 | 473 | 2.65e-11 | 65.9 |
| Msa0195340 | MtrunA17_Chr3g0136971 | 35.000 | 120 | 59 | 2 | 165 | 284 | 520 | 620 | 3.01e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195340 | AT4G05410.1 | 54.455 | 505 | 197 | 8 | 10 | 503 | 22 | 504 | 0.0 | 526 |
| Msa0195340 | AT4G21130.1 | 52.569 | 506 | 202 | 5 | 1 | 503 | 9 | 479 | 2.37e-174 | 499 |
| Msa0195340 | AT3G18130.1 | 24.671 | 304 | 184 | 9 | 144 | 441 | 59 | 323 | 2.04e-16 | 80.9 |
| Msa0195340 | AT1G48630.1 | 24.342 | 304 | 185 | 9 | 144 | 441 | 59 | 323 | 1.64e-15 | 78.2 |
| Msa0195340 | AT1G48630.1 | 26.778 | 239 | 147 | 8 | 143 | 370 | 10 | 231 | 1.99e-12 | 68.9 |
| Msa0195340 | AT5G52820.1 | 32.520 | 123 | 82 | 1 | 199 | 320 | 350 | 472 | 3.18e-15 | 78.6 |
| Msa0195340 | AT2G32700.6 | 24.286 | 210 | 116 | 4 | 207 | 373 | 506 | 715 | 6.98e-15 | 78.2 |
| Msa0195340 | AT2G32700.2 | 24.286 | 210 | 116 | 4 | 207 | 373 | 508 | 717 | 7.17e-15 | 78.2 |
| Msa0195340 | AT2G32700.5 | 24.286 | 210 | 116 | 4 | 207 | 373 | 508 | 717 | 7.17e-15 | 78.2 |
| Msa0195340 | AT2G32700.1 | 24.286 | 210 | 116 | 4 | 207 | 373 | 508 | 717 | 7.17e-15 | 78.2 |
| Msa0195340 | AT2G32700.4 | 24.286 | 210 | 116 | 4 | 207 | 373 | 508 | 717 | 7.17e-15 | 78.2 |
| Msa0195340 | AT2G32700.3 | 24.286 | 210 | 116 | 4 | 207 | 373 | 508 | 717 | 7.17e-15 | 78.2 |
| Msa0195340 | AT2G32700.7 | 24.286 | 210 | 116 | 4 | 207 | 373 | 527 | 736 | 7.73e-15 | 77.8 |
| Msa0195340 | AT5G16750.1 | 32.967 | 182 | 96 | 6 | 151 | 325 | 63 | 225 | 1.21e-14 | 77.4 |
| Msa0195340 | AT3G21540.1 | 32.911 | 158 | 86 | 4 | 169 | 325 | 85 | 223 | 5.32e-14 | 75.5 |
| Msa0195340 | AT1G18080.1 | 25.225 | 222 | 141 | 4 | 144 | 359 | 59 | 261 | 1.52e-13 | 72.0 |
| Msa0195340 | AT5G67320.1 | 26.201 | 229 | 160 | 5 | 147 | 371 | 264 | 487 | 3.77e-13 | 72.4 |
| Msa0195340 | AT2G05720.1 | 30.625 | 160 | 105 | 4 | 147 | 300 | 105 | 264 | 1.59e-12 | 68.6 |
| Msa0195340 | AT1G61210.3 | 28.713 | 202 | 121 | 5 | 141 | 319 | 51 | 252 | 3.23e-12 | 69.7 |
| Msa0195340 | AT1G61210.2 | 29.487 | 156 | 89 | 2 | 165 | 319 | 117 | 252 | 4.20e-12 | 69.3 |
| Msa0195340 | AT1G61210.1 | 29.487 | 156 | 89 | 2 | 165 | 319 | 117 | 252 | 4.21e-12 | 69.3 |
| Msa0195340 | AT4G15900.1 | 25.114 | 219 | 143 | 3 | 143 | 359 | 213 | 412 | 5.07e-12 | 68.6 |
| Msa0195340 | AT1G11160.3 | 26.238 | 202 | 126 | 4 | 141 | 319 | 9 | 210 | 9.34e-12 | 68.2 |
| Msa0195340 | AT1G24130.1 | 27.957 | 186 | 104 | 7 | 145 | 320 | 189 | 354 | 1.79e-11 | 66.6 |
| Msa0195340 | AT1G11160.4 | 26.500 | 200 | 124 | 4 | 143 | 319 | 53 | 252 | 1.92e-11 | 67.4 |
| Msa0195340 | AT1G11160.1 | 26.500 | 200 | 124 | 4 | 143 | 319 | 53 | 252 | 2.14e-11 | 67.0 |
| Msa0195340 | AT1G11160.2 | 26.500 | 200 | 124 | 4 | 143 | 319 | 53 | 252 | 2.20e-11 | 67.0 |
| Msa0195340 | AT5G50230.1 | 22.318 | 233 | 162 | 7 | 224 | 441 | 240 | 468 | 2.24e-11 | 66.6 |
| Msa0195340 | AT1G15440.2 | 28.125 | 160 | 96 | 3 | 141 | 299 | 384 | 525 | 2.61e-11 | 66.6 |
| Msa0195340 | AT1G15440.1 | 28.125 | 160 | 96 | 3 | 141 | 299 | 424 | 565 | 2.80e-11 | 66.6 |
| Msa0195340 | AT5G25150.1 | 32.500 | 120 | 62 | 2 | 165 | 284 | 519 | 619 | 6.95e-11 | 65.1 |
| Msa0195340 | AT5G25150.2 | 32.500 | 120 | 62 | 2 | 165 | 284 | 519 | 619 | 7.69e-11 | 65.1 |
| Msa0195340 | AT1G24530.1 | 25.703 | 249 | 126 | 10 | 145 | 366 | 192 | 408 | 9.41e-11 | 64.3 |
Find 142 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTAGTATGCAGTTGTTTA+AGG | 0.158441 | 2_1:-12180811 | Msa0195340:intron |
| ATTTGGGAAATTTGAGATTT+TGG | 0.169592 | 2_1:+12182601 | None:intergenic |
| GGGTTAGGGTTTCAGAGATT+TGG | 0.240860 | 2_1:+12182584 | None:intergenic |
| TTGATCGTCATATTCATATA+TGG | 0.249177 | 2_1:-12181533 | Msa0195340:CDS |
| TTTATCTGAGGATGATTCTA+AGG | 0.262062 | 2_1:-12181754 | Msa0195340:CDS |
| GGTTGGGTTTGTCAATTCTT+TGG | 0.267712 | 2_1:-12179809 | Msa0195340:CDS |
| ATGAAGCGGTTTAATGTCTT+TGG | 0.274416 | 2_1:+12179955 | None:intergenic |
| GGTTAGGGTTTCAGAGATTT+GGG | 0.286494 | 2_1:+12182585 | None:intergenic |
| GCGGGCATGATTGAATTGTT+AGG | 0.297387 | 2_1:+12182563 | None:intergenic |
| TTCTTGCGGTTGTTCTTTGC+GGG | 0.303078 | 2_1:+12182545 | None:intergenic |
| TGATGGTAGCATTGAGCTTT+GGG | 0.320486 | 2_1:-12180463 | Msa0195340:CDS |
| GATGGTCGCTATTTGGCAAC+TGG | 0.323491 | 2_1:-12181561 | Msa0195340:CDS |
| TGTGTTATTTAGGGTTAAAC+TGG | 0.332866 | 2_1:-12181835 | Msa0195340:intron |
| ATGATTGAATTGTTAGGGTT+AGG | 0.333769 | 2_1:+12182569 | None:intergenic |
| AAGTTCAGATGGTCGCTATT+TGG | 0.336260 | 2_1:-12181568 | Msa0195340:CDS |
| AACAAAACAACAGCATTCTA+AGG | 0.349174 | 2_1:+12180515 | None:intergenic |
| CTTCTTGCGGTTGTTCTTTG+CGG | 0.352672 | 2_1:+12182544 | None:intergenic |
| GCCGCATCTGGTGCGGGTAA+TGG | 0.356528 | 2_1:-12180010 | Msa0195340:CDS |
| TAGAGGTCCTGTTTCTTCTC+TGG | 0.361793 | 2_1:-12181000 | Msa0195340:CDS |
| TTCAAAATTCTCAAAACAAT+CGG | 0.367746 | 2_1:+12177976 | None:intergenic |
| TGATTGAATTGTTAGGGTTA+GGG | 0.371619 | 2_1:+12182570 | None:intergenic |
| TCAGCAAAATTCCTAGTTGC+TGG | 0.374225 | 2_1:-12179775 | Msa0195340:CDS |
| GCGCACTAGGGAGCATCTTC+AGG | 0.377779 | 2_1:-12181505 | Msa0195340:intron |
| TTGATCGAACGATTAAGATA+TGG | 0.379793 | 2_1:-12180938 | Msa0195340:CDS |
| ATGATGGTAGCATTGAGCTT+TGG | 0.379946 | 2_1:-12180464 | Msa0195340:CDS |
| AACAGTGACCTTGCCGCATC+TGG | 0.381669 | 2_1:-12180022 | Msa0195340:CDS |
| GGCGGCTACTCTGCGGCGTT+TGG | 0.384477 | 2_1:+12182487 | None:intergenic |
| GGCTACTCTGCGGCGTTTGG+TGG | 0.386767 | 2_1:+12182490 | None:intergenic |
| AATAATGAGGAATTCTTGTC+TGG | 0.393333 | 2_1:-12180492 | Msa0195340:CDS |
| GAGTAGCTGAGGAGTATTTG+AGG | 0.396735 | 2_1:-12182343 | Msa0195340:CDS |
| ATTGTTCGTCAGTACACTCT+TGG | 0.407718 | 2_1:-12180069 | Msa0195340:CDS |
| TCAGAAAAGCTATTGCTTCA+AGG | 0.412080 | 2_1:-12182175 | Msa0195340:intron |
| CGGGCATGATTGAATTGTTA+GGG | 0.419522 | 2_1:+12182564 | None:intergenic |
| AAATTCCTAGTTGCTGGAGT+TGG | 0.422760 | 2_1:-12179769 | Msa0195340:CDS |
| ATCGAAAGGTGAAGGGGAAC+AGG | 0.431103 | 2_1:-12182402 | Msa0195340:CDS |
| TCTATGAGTAAGCGAGGCTT+TGG | 0.436605 | 2_1:-12177844 | Msa0195340:three_prime_UTR |
| TGAGGAATTCTTGTCTGGTT+CGG | 0.438253 | 2_1:-12180487 | Msa0195340:CDS |
| TTGATTGTTTACGCAAAGAA+AGG | 0.438257 | 2_1:-12180854 | Msa0195340:CDS |
| TTCTTGTCTGGTTCGGATGA+TGG | 0.442227 | 2_1:-12180480 | Msa0195340:CDS |
| TACTTAATACTTCACTTTGG+TGG | 0.445587 | 2_1:+12180877 | None:intergenic |
| ACTTACATGAATACTCTGTT+TGG | 0.448065 | 2_1:-12180900 | Msa0195340:CDS |
| TCTGAAGTCCCATGGCTTGA+AGG | 0.451032 | 2_1:-12181643 | Msa0195340:CDS |
| AATTCCTAGTTGCTGGAGTT+GGG | 0.454442 | 2_1:-12179768 | Msa0195340:CDS |
| GGACTTCAGAACCGAATCAA+TGG | 0.457791 | 2_1:+12181656 | None:intergenic |
| GCTATCGACGAAGATGATAA+AGG | 0.458031 | 2_1:-12182222 | Msa0195340:CDS |
| TGATCGTCATATTCATATAT+GGG | 0.461527 | 2_1:-12181532 | Msa0195340:CDS |
| GTATAAGTGGCCCATTGATT+CGG | 0.462919 | 2_1:-12181667 | Msa0195340:CDS |
| ATGAAGATGAGGATGGGGCA+AGG | 0.478613 | 2_1:-12182250 | Msa0195340:CDS |
| GCATTCCTCAAAATATGAAT+AGG | 0.478685 | 2_1:+12180423 | None:intergenic |
| TCTCATGATGACAATTTAAG+TGG | 0.478829 | 2_1:+12178122 | None:intergenic |
| TGACGAACAATGGTGATTCT+CGG | 0.481332 | 2_1:+12180081 | None:intergenic |
| GACCTTGCCGCATCTGGTGC+GGG | 0.481462 | 2_1:-12180016 | Msa0195340:CDS |
| CCTAGTTGCTGGAGTTGGGC+AGG | 0.482464 | 2_1:-12179764 | Msa0195340:intron |
| GACGAACAATGGTGATTCTC+GGG | 0.482880 | 2_1:+12180082 | None:intergenic |
| GGAAGTTTAAAGATAGTGCT+AGG | 0.483861 | 2_1:-12182322 | Msa0195340:CDS |
| AAAGACAAAGGTTGCAGCTA+GGG | 0.486534 | 2_1:+12182646 | None:intergenic |
| TGTTCCCCTTCACCTTTCGA+TGG | 0.486752 | 2_1:+12182404 | None:intergenic |
| GCTACTCTGCGGCGTTTGGT+GGG | 0.489709 | 2_1:+12182491 | None:intergenic |
| TCAAAATTCTCAAAACAATC+GGG | 0.497032 | 2_1:+12177977 | None:intergenic |
| TGACCTTGCCGCATCTGGTG+CGG | 0.500692 | 2_1:-12180017 | Msa0195340:CDS |
| GACTTCAGAACCGAATCAAT+GGG | 0.500825 | 2_1:+12181657 | None:intergenic |
| CTAAAAGCCAGAGAAGAAAC+AGG | 0.502189 | 2_1:+12180993 | None:intergenic |
| AGATGGAAGCATTGTGCAAT+GGG | 0.503563 | 2_1:-12181715 | Msa0195340:CDS |
| CAAAGAGATGAAGATGATGA+TGG | 0.512344 | 2_1:-12182287 | Msa0195340:CDS |
| TTGTTCGTCAGTACACTCTT+GGG | 0.515002 | 2_1:-12180068 | Msa0195340:CDS |
| CTCAGCATCTTGATCTTCAT+CGG | 0.521698 | 2_1:+12182466 | None:intergenic |
| CAATACTTAATACTTCACTT+TGG | 0.525590 | 2_1:+12180874 | None:intergenic |
| TTATTTAGGGTTAAACTGGA+TGG | 0.527005 | 2_1:-12181831 | Msa0195340:intron |
| TGAAGATGAGGATGGGGCAA+GGG | 0.529509 | 2_1:-12182249 | Msa0195340:CDS |
| GCAATTAGTCAAAATTGAAG+AGG | 0.530500 | 2_1:+12178078 | None:intergenic |
| ATATATGGGATACGCGCACT+AGG | 0.531446 | 2_1:-12181518 | Msa0195340:CDS |
| ACTTTGGCTGCAAGTTCAGA+TGG | 0.532678 | 2_1:-12181579 | Msa0195340:CDS |
| ATGGTCGCTATTTGGCAACT+GGG | 0.534092 | 2_1:-12181560 | Msa0195340:CDS |
| TTTGTTCCATCGAAAGGTGA+AGG | 0.537167 | 2_1:-12182410 | Msa0195340:CDS |
| TTATCTGAGGATGATTCTAA+GGG | 0.538043 | 2_1:-12181753 | Msa0195340:CDS |
| CCTGCCCAACTCCAGCAACT+AGG | 0.543124 | 2_1:+12179764 | None:intergenic |
| AAAGAAAGGGTATTATCTGC+TGG | 0.543326 | 2_1:-12180840 | Msa0195340:CDS |
| GATTCGGTTCTGAAGTCCCA+TGG | 0.547975 | 2_1:-12181651 | Msa0195340:CDS |
| AGGTTTACCTAGGTTACCGT+TGG | 0.548172 | 2_1:+12180344 | None:intergenic |
| AGGAAACTACAGCTGAAGCT+AGG | 0.549075 | 2_1:-12182370 | Msa0195340:CDS |
| TGATTGTTTACGCAAAGAAA+GGG | 0.549662 | 2_1:-12180853 | Msa0195340:CDS |
| AGAATACGTGAAGCTCGTAA+TGG | 0.550611 | 2_1:-12178158 | Msa0195340:CDS |
| AGGAACCTCGTCTAGGAAGG+TGG | 0.554796 | 2_1:-12178184 | Msa0195340:CDS |
| CAAAGACAAAGGTTGCAGCT+AGG | 0.555995 | 2_1:+12182645 | None:intergenic |
| TACAGGAACCTCGTCTAGGA+AGG | 0.557034 | 2_1:-12178187 | Msa0195340:intron |
| TTGTTCCATCGAAAGGTGAA+GGG | 0.560861 | 2_1:-12182409 | Msa0195340:CDS |
| CAGCATTCTAAGGAAGATGC+AGG | 0.563049 | 2_1:+12180525 | None:intergenic |
| ATACTACCCAACGGTAACCT+AGG | 0.563236 | 2_1:-12180351 | Msa0195340:intron |
| CTTGAGGATCCTTCAAGCCA+TGG | 0.567504 | 2_1:+12181634 | None:intergenic |
| GGAACCTCGTCTAGGAAGGT+GGG | 0.567525 | 2_1:-12178183 | Msa0195340:CDS |
| ACCGCTTCATAATGTACCGT+TGG | 0.569065 | 2_1:-12179942 | Msa0195340:intron |
| GATGATGATGAAGATGAGGA+TGG | 0.575039 | 2_1:-12182257 | Msa0195340:CDS |
| ACCATTACCCGCACCAGATG+CGG | 0.576457 | 2_1:+12180009 | None:intergenic |
| AAGATGGAAGCATTGTGCAA+TGG | 0.576859 | 2_1:-12181716 | Msa0195340:CDS |
| CTTCCCCACCTTCCTAGACG+AGG | 0.577906 | 2_1:+12178179 | None:intergenic |
| TTGAGGATCCTTCAAGCCAT+GGG | 0.579870 | 2_1:+12181635 | None:intergenic |
| AGGGTTAAACTGGATGGTCA+TGG | 0.580849 | 2_1:-12181825 | Msa0195340:CDS |
| AACAATGGTGATTCTCGGGA+TGG | 0.581006 | 2_1:+12180086 | None:intergenic |
| AGCTAGGAAGAGAGTAGCTG+AGG | 0.585734 | 2_1:-12182354 | Msa0195340:CDS |
| TGATGATGAAGATGAGGATG+GGG | 0.586713 | 2_1:-12182255 | Msa0195340:CDS |
| GGTTTACCTAGGTTACCGTT+GGG | 0.589730 | 2_1:+12180345 | None:intergenic |
| AGATAGTGCTAGGAGAGAGA+AGG | 0.590376 | 2_1:-12182312 | Msa0195340:CDS |
| GGAAATGTGAGAGGTATAAG+TGG | 0.597715 | 2_1:-12181680 | Msa0195340:CDS |
| TACCCGCACCAGATGCGGCA+AGG | 0.597735 | 2_1:+12180014 | None:intergenic |
| ATGATGATGAAGATGAGGAT+GGG | 0.602093 | 2_1:-12182256 | Msa0195340:CDS |
| GATACATATAATTAAGATCA+CGG | 0.603779 | 2_1:+12178023 | None:intergenic |
| TACTGCGGTGGCTTTATCTG+AGG | 0.604178 | 2_1:-12181766 | Msa0195340:CDS |
| GAACCTCGTCTAGGAAGGTG+GGG | 0.608130 | 2_1:-12178182 | Msa0195340:CDS |
| TTGTAGACATTTGTTCACTT+AGG | 0.609294 | 2_1:-12177869 | Msa0195340:three_prime_UTR |
| TCCTACGTTGAAAAGACTTG+AGG | 0.609433 | 2_1:-12177939 | Msa0195340:three_prime_UTR |
| TCAGTGCAGTGACCGTCTGT+AGG | 0.612967 | 2_1:-12180045 | Msa0195340:CDS |
| TGCAATGGGATGTTGAGAGT+GGG | 0.616349 | 2_1:-12181701 | Msa0195340:CDS |
| ACAACTGCATACTACGATCA+CGG | 0.616853 | 2_1:+12180817 | None:intergenic |
| TTGAGAGTGGGAAATGTGAG+AGG | 0.619145 | 2_1:-12181689 | Msa0195340:CDS |
| ACCAACGGTACATTATGAAG+CGG | 0.619771 | 2_1:+12179941 | None:intergenic |
| TGTTCCATCGAAAGGTGAAG+GGG | 0.620286 | 2_1:-12182408 | Msa0195340:CDS |
| TGCTTTGTAGCAGAACCTTG+AGG | 0.621073 | 2_1:+12181618 | None:intergenic |
| TATATGGGATACGCGCACTA+GGG | 0.624499 | 2_1:-12181517 | Msa0195340:CDS |
| AATTGTCATCATGAGATCTG+AGG | 0.624527 | 2_1:-12178115 | Msa0195340:exon |
| GGTCGCGTGAATTCTTCTTG+CGG | 0.627721 | 2_1:+12182531 | None:intergenic |
| GATGATAAAGGAGCAGCAAG+AGG | 0.629548 | 2_1:-12182210 | Msa0195340:CDS |
| TGGTCGCTATTTGGCAACTG+GGG | 0.630469 | 2_1:-12181559 | Msa0195340:CDS |
| AAGGTCACTGTTCCTACAGA+CGG | 0.637361 | 2_1:+12180033 | None:intergenic |
| AAGAGTGTACTGACGAACAA+TGG | 0.638794 | 2_1:+12180071 | None:intergenic |
| AAACGATCCAGAAAATAGCT+CGG | 0.640991 | 2_1:+12180959 | None:intergenic |
| GGTCGCTATTTGGCAACTGG+GGG | 0.641423 | 2_1:-12181558 | Msa0195340:CDS |
| GAAACAGGACCTCTATGACC+AGG | 0.641871 | 2_1:+12181008 | None:intergenic |
| AAGGAGCAGCAAGAGGAGAG+TGG | 0.643486 | 2_1:-12182203 | Msa0195340:CDS |
| AGCATCTTGATCTTCATCGG+CGG | 0.643638 | 2_1:+12182469 | None:intergenic |
| GATTAAGATATGGAATGTTG+AGG | 0.643891 | 2_1:-12180928 | Msa0195340:CDS |
| TAAACAATGTGTTACTGCGG+TGG | 0.645198 | 2_1:-12181778 | Msa0195340:CDS |
| AGGGGAACAGGAGTCTGAAG+AGG | 0.648059 | 2_1:-12182390 | Msa0195340:CDS |
| AATGGTGATTCTCGGGATGG+TGG | 0.653592 | 2_1:+12180089 | None:intergenic |
| GTGCAATGGGATGTTGAGAG+TGG | 0.654323 | 2_1:-12181702 | Msa0195340:CDS |
| GTTAAACTGGATGGTCATGG+TGG | 0.654394 | 2_1:-12181822 | Msa0195340:CDS |
| TAGGCATCTATGAGTAAGCG+AGG | 0.656558 | 2_1:-12177850 | Msa0195340:three_prime_UTR |
| CATGGCTTGAAGGATCCTCA+AGG | 0.657629 | 2_1:-12181633 | Msa0195340:CDS |
| GATGGTAGCATTGAGCTTTG+GGG | 0.661259 | 2_1:-12180462 | Msa0195340:CDS |
| GATAGTGAAATACTACCCAA+CGG | 0.686398 | 2_1:-12180360 | Msa0195340:CDS |
| TATCTGAGGATGATTCTAAG+GGG | 0.700099 | 2_1:-12181752 | Msa0195340:CDS |
| CTTCATCGGCGGCTACTCTG+CGG | 0.710277 | 2_1:+12182480 | None:intergenic |
| GCATAAACAATGTGTTACTG+CGG | 0.761595 | 2_1:-12181781 | Msa0195340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAGTGATTAATTAAT+AGG | - | chr2_1:12179799-12179818 | Msa0195340:CDS | 10.0% |
| !!! | ATTAGTATATTGTTTTTTAA+TGG | - | chr2_1:12182122-12182141 | Msa0195340:intron | 10.0% |
| !!! | TTAGTATATTGTTTTTTAAT+GGG | - | chr2_1:12182123-12182142 | Msa0195340:intron | 10.0% |
| !! | ATTATTCAATTAAACCAAAA+GGG | + | chr2_1:12178464-12178483 | None:intergenic | 15.0% |
| !! | AATTATTCAATTAAACCAAA+AGG | + | chr2_1:12178465-12178484 | None:intergenic | 15.0% |
| !! | TTGAATAATTATTGAAACAA+TGG | - | chr2_1:12178475-12178494 | Msa0195340:intron | 15.0% |
| !! | ATTATTCATTTAAACCAAAA+GGG | + | chr2_1:12178522-12178541 | None:intergenic | 15.0% |
| !! | AATTATTCATTTAAACCAAA+AGG | + | chr2_1:12178523-12178542 | None:intergenic | 15.0% |
| !! | TAATTGAATAATTAAAGCAA+TGG | - | chr2_1:12178573-12178592 | Msa0195340:intron | 15.0% |
| !! | AATTGAATAATTAAAGCAAT+GGG | - | chr2_1:12178574-12178593 | Msa0195340:intron | 15.0% |
| !! | ATATTCAAAAATACAATTGT+TGG | - | chr2_1:12179063-12179082 | Msa0195340:intron | 15.0% |
| !! | GAATTACTAAATACAAATTA+AGG | + | chr2_1:12179341-12179360 | None:intergenic | 15.0% |
| !! | AATTTGTATTTAGTAATTCT+TGG | - | chr2_1:12179342-12179361 | Msa0195340:intron | 15.0% |
| !! | AAATGAAAATATAATCATTG+AGG | + | chr2_1:12180264-12180283 | None:intergenic | 15.0% |
| !! | AACTAAACTCATTTATTTAT+TGG | - | chr2_1:12180583-12180602 | Msa0195340:intron | 15.0% |
| !!! | ATTTTACTTAATTTTCTCTT+TGG | - | chr2_1:12180800-12180819 | Msa0195340:intron | 15.0% |
| !! | TAAAAAATTGTATTGTAGAA+GGG | + | chr2_1:12181176-12181195 | None:intergenic | 15.0% |
| !!! | ATCCAAAGTATAAATTTTTA+AGG | + | chr2_1:12181377-12181396 | None:intergenic | 15.0% |
| !! | TTAGTATAAGCATATTAATA+TGG | - | chr2_1:12181448-12181467 | Msa0195340:intron | 15.0% |
| !!! | ATTTGAGATTTTGGTTTTTA+GGG | + | chr2_1:12177879-12177898 | None:intergenic | 20.0% |
| !!! | AATTTGAGATTTTGGTTTTT+AGG | + | chr2_1:12177880-12177899 | None:intergenic | 20.0% |
| !! | TAAATGAATAATTGAAGCAA+TGG | - | chr2_1:12178530-12178549 | Msa0195340:intron | 20.0% |
| !! | AAATGAATAATTGAAGCAAT+GGG | - | chr2_1:12178531-12178550 | Msa0195340:intron | 20.0% |
| !!! | ACAATTGTTGGATATTTTTT+TGG | - | chr2_1:12179075-12179094 | Msa0195340:intron | 20.0% |
| !!! | CAATTGTTGGATATTTTTTT+GGG | - | chr2_1:12179076-12179095 | Msa0195340:intron | 20.0% |
| !!! | AATTGTTGGATATTTTTTTG+GGG | - | chr2_1:12179077-12179096 | Msa0195340:intron | 20.0% |
| !! | TTGTTTGTATTTACAGATTA+AGG | - | chr2_1:12179142-12179161 | Msa0195340:intron | 20.0% |
| !! | TGTTTGTATTTACAGATTAA+GGG | - | chr2_1:12179143-12179162 | Msa0195340:intron | 20.0% |
| !! | ATGTTATATGTTAACATAAG+CGG | - | chr2_1:12179307-12179326 | Msa0195340:intron | 20.0% |
| !! | ACTATCAATACAGTATTTAA+AGG | + | chr2_1:12180165-12180184 | None:intergenic | 20.0% |
| !! | ACAAATGACAGATATATTTA+CGG | + | chr2_1:12180290-12180309 | None:intergenic | 20.0% |
| !!! | TAATAAATCTTTTGTATCAC+AGG | - | chr2_1:12180656-12180675 | Msa0195340:intron | 20.0% |
| !! | AATCACTATTTCAAAAAAGA+TGG | + | chr2_1:12180904-12180923 | None:intergenic | 20.0% |
| !! | CTAAAAAATTGTATTGTAGA+AGG | + | chr2_1:12181177-12181196 | None:intergenic | 20.0% |
| !! | TGCCTTAAAAATTTATACTT+TGG | - | chr2_1:12181372-12181391 | Msa0195340:intron | 20.0% |
| !! | TAGAAGATAGTTAATTGTTA+TGG | - | chr2_1:12181423-12181442 | Msa0195340:intron | 20.0% |
| !! | AGAAGATAGTTAATTGTTAT+GGG | - | chr2_1:12181424-12181443 | Msa0195340:intron | 20.0% |
| !! | TGAAGGAATTAATAACATTA+AGG | - | chr2_1:12181647-12181666 | Msa0195340:CDS | 20.0% |
| !! | GAAGGAATTAATAACATTAA+GGG | - | chr2_1:12181648-12181667 | Msa0195340:CDS | 20.0% |
| !! | TTCTAAATGGAGTTTAATAA+AGG | + | chr2_1:12181770-12181789 | None:intergenic | 20.0% |
| !! | TTTATTAAACTCCATTTAGA+AGG | - | chr2_1:12181769-12181788 | Msa0195340:CDS | 20.0% |
| !!! | TACAATTTTTGTTTTGATTG+AGG | - | chr2_1:12182080-12182099 | Msa0195340:intron | 20.0% |
| !!! | TTAACAAAATGTCTTTTTAC+AGG | - | chr2_1:12182282-12182301 | Msa0195340:CDS | 20.0% |
| !! | GATACATATAATTAAGATCA+CGG | + | chr2_1:12182466-12182485 | None:intergenic | 20.0% |
| !! | TTCAAAATTCTCAAAACAAT+CGG | + | chr2_1:12182513-12182532 | None:intergenic | 20.0% |
| !!! | ATTTGGGAAATTTGAGATTT+TGG | + | chr2_1:12177888-12177907 | None:intergenic | 25.0% |
| ! | AACAAGCAATTTAACCAAAA+GGG | + | chr2_1:12178412-12178431 | None:intergenic | 25.0% |
| ! | AAACAAGCAATTTAACCAAA+AGG | + | chr2_1:12178413-12178432 | None:intergenic | 25.0% |
| ! | TTTGGCTAAATTGATTGATT+TGG | - | chr2_1:12178627-12178646 | Msa0195340:intron | 25.0% |
| !! | TTGGCTAAATTGATTGATTT+GGG | - | chr2_1:12178628-12178647 | Msa0195340:intron | 25.0% |
| ! | TTGATCGTCATATTCATATA+TGG | - | chr2_1:12178953-12178972 | Msa0195340:intron | 25.0% |
| ! | TGATCGTCATATTCATATAT+GGG | - | chr2_1:12178954-12178973 | Msa0195340:intron | 25.0% |
| ! | CAAAGTTTCAAAGAATGAAA+AGG | + | chr2_1:12179015-12179034 | None:intergenic | 25.0% |
| !!! | AAACTTTGAAATGAACAACA+AGG | - | chr2_1:12179027-12179046 | Msa0195340:intron | 25.0% |
| ! | AATGAACAACAAGGTTATAT+AGG | - | chr2_1:12179036-12179055 | Msa0195340:intron | 25.0% |
| ! | ATGAACAACAAGGTTATATA+GGG | - | chr2_1:12179037-12179056 | Msa0195340:intron | 25.0% |
| ! | CAATACTTAATACTTCACTT+TGG | + | chr2_1:12179615-12179634 | None:intergenic | 25.0% |
| ! | ATATACTTAAGACTTCATCT+TGG | + | chr2_1:12179709-12179728 | None:intergenic | 25.0% |
| ! | AAGATGAAGTCTTAAGTATA+TGG | - | chr2_1:12179708-12179727 | Msa0195340:intron | 25.0% |
| ! | CAAAACCATATTGTATATGT+CGG | - | chr2_1:12179734-12179753 | Msa0195340:intron | 25.0% |
| ! | AATTTCTTTCCTATCTTCAA+AGG | - | chr2_1:12179823-12179842 | Msa0195340:intron | 25.0% |
| ! | ATGTGTATTCTCTGTAATTT+AGG | - | chr2_1:12179906-12179925 | Msa0195340:intron | 25.0% |
| !!! | CTGTTGTTTTGTTAATAATG+AGG | - | chr2_1:12179981-12180000 | Msa0195340:CDS | 25.0% |
| !! | GTAGTATTTCACTATCTTTT+TGG | + | chr2_1:12180122-12180141 | None:intergenic | 25.0% |
| ! | CATAAGAAGTAAATTTCTGA+AGG | + | chr2_1:12180189-12180208 | None:intergenic | 25.0% |
| ! | ATATTGAGAAAAGTAAGCAA+AGG | + | chr2_1:12180230-12180249 | None:intergenic | 25.0% |
| ! | GTTATAGTTAGCATTATGTT+AGG | - | chr2_1:12180330-12180349 | Msa0195340:intron | 25.0% |
| !!! | GTAATGGTTTTGTTAGATTA+TGG | - | chr2_1:12180492-12180511 | Msa0195340:CDS | 25.0% |
| !!! | TTACTCTGTTTTTTCTTCTT+TGG | - | chr2_1:12180772-12180791 | Msa0195340:intron | 25.0% |
| !! | AATAGTGATTTTGTAGAGAA+TGG | - | chr2_1:12180914-12180933 | Msa0195340:CDS | 25.0% |
| !! | AAAGAAATAAAGAAGTGCAA+GGG | + | chr2_1:12181277-12181296 | None:intergenic | 25.0% |
| !! | AAAAGAAATAAAGAAGTGCA+AGG | + | chr2_1:12181278-12181297 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAATAGAGTTTA+AGG | + | chr2_1:12181347-12181366 | None:intergenic | 25.0% |
| !!! | AACTATCTTCTAAAGTAGTT+CGG | + | chr2_1:12181415-12181434 | None:intergenic | 25.0% |
| !! | AACTAAATTTTCAGCGATTA+TGG | - | chr2_1:12181471-12181490 | Msa0195340:intron | 25.0% |
| !!! | TAAAGCAATAGAGTTTTTAG+GGG | + | chr2_1:12181537-12181556 | None:intergenic | 25.0% |
| !! | CTAAAGCAATAGAGTTTTTA+GGG | + | chr2_1:12181538-12181557 | None:intergenic | 25.0% |
| !!! | TCTAAAGCAATAGAGTTTTT+AGG | + | chr2_1:12181539-12181558 | None:intergenic | 25.0% |
| ! | ATGTTAAGTGATTAAAGTGA+AGG | - | chr2_1:12181630-12181649 | Msa0195340:CDS | 25.0% |
| !!! | AATGAAATTAGCCTTCTAAA+TGG | + | chr2_1:12181783-12181802 | None:intergenic | 25.0% |
| ! | TCAAAATTCTCAAAACAATC+GGG | + | chr2_1:12182512-12182531 | None:intergenic | 25.0% |
| ! | TTTTGATGAGACAAAGACAA+AGG | + | chr2_1:12177855-12177874 | None:intergenic | 30.0% |
| TGATTGAATTGTTAGGGTTA+GGG | + | chr2_1:12177919-12177938 | None:intergenic | 30.0% | |
| ATGATTGAATTGTTAGGGTT+AGG | + | chr2_1:12177920-12177939 | None:intergenic | 30.0% | |
| ! | TGATTTCAATGTAACCCTTT+TGG | - | chr2_1:12178505-12178524 | Msa0195340:intron | 30.0% |
| ! | TGATTTCAATGTGACTCTTT+TGG | - | chr2_1:12178609-12178628 | Msa0195340:intron | 30.0% |
| !! | TTGATTTGGGTGTGTTATTT+AGG | - | chr2_1:12178641-12178660 | Msa0195340:intron | 30.0% |
| !! | TGATTTGGGTGTGTTATTTA+GGG | - | chr2_1:12178642-12178661 | Msa0195340:intron | 30.0% |
| !! | TGTGTTATTTAGGGTTAAAC+TGG | - | chr2_1:12178651-12178670 | Msa0195340:intron | 30.0% |
| ! | TTATTTAGGGTTAAACTGGA+TGG | - | chr2_1:12178655-12178674 | Msa0195340:intron | 30.0% |
| TTTATCTGAGGATGATTCTA+AGG | - | chr2_1:12178732-12178751 | Msa0195340:intron | 30.0% | |
| TTATCTGAGGATGATTCTAA+GGG | - | chr2_1:12178733-12178752 | Msa0195340:intron | 30.0% | |
| !!! | AAGTAGACAGATTTTGACTT+TGG | - | chr2_1:12178891-12178910 | Msa0195340:intron | 30.0% |
| ! | CAAAAGTACAAGCCTATTTA+TGG | - | chr2_1:12179371-12179390 | Msa0195340:intron | 30.0% |
| TATTTATGGCCAAATCTGTA+GGG | - | chr2_1:12179385-12179404 | Msa0195340:intron | 30.0% | |
| ! | TTTTGTCCATTGTCTTTTAC+AGG | - | chr2_1:12179450-12179469 | Msa0195340:intron | 30.0% |
| TTGATCGAACGATTAAGATA+TGG | - | chr2_1:12179548-12179567 | Msa0195340:intron | 30.0% | |
| GATTAAGATATGGAATGTTG+AGG | - | chr2_1:12179558-12179577 | Msa0195340:intron | 30.0% | |
| ACTTACATGAATACTCTGTT+TGG | - | chr2_1:12179586-12179605 | Msa0195340:intron | 30.0% | |
| TACTTAATACTTCACTTTGG+TGG | + | chr2_1:12179612-12179631 | None:intergenic | 30.0% | |
| TTGATTGTTTACGCAAAGAA+AGG | - | chr2_1:12179632-12179651 | Msa0195340:intron | 30.0% | |
| TGATTGTTTACGCAAAGAAA+GGG | - | chr2_1:12179633-12179652 | Msa0195340:intron | 30.0% | |
| AACATCCGACATATACAATA+TGG | + | chr2_1:12179742-12179761 | None:intergenic | 30.0% | |
| ! | ATTTTCCAAAAACAGAGCAA+TGG | + | chr2_1:12179780-12179799 | None:intergenic | 30.0% |
| AACAAAACAACAGCATTCTA+AGG | + | chr2_1:12179974-12179993 | None:intergenic | 30.0% | |
| AATAATGAGGAATTCTTGTC+TGG | - | chr2_1:12179994-12180013 | Msa0195340:CDS | 30.0% | |
| ! | AGAAGCCTATTCATATTTTG+AGG | - | chr2_1:12180058-12180077 | Msa0195340:CDS | 30.0% |
| GCATTCCTCAAAATATGAAT+AGG | + | chr2_1:12180066-12180085 | None:intergenic | 30.0% | |
| CAGTATTTAAAGGTTTACCT+AGG | + | chr2_1:12180155-12180174 | None:intergenic | 30.0% | |
| TTTCTGCATAGTGAAGATAA+TGG | + | chr2_1:12180370-12180389 | None:intergenic | 30.0% | |
| TATCTTCACTATGCAGAAAA+TGG | - | chr2_1:12180371-12180390 | Msa0195340:CDS | 30.0% | |
| ATTGGATTCATATTCATGCT+TGG | - | chr2_1:12180601-12180620 | Msa0195340:intron | 30.0% | |
| ! | AAATCTTTTGTATCACAGGT+TGG | - | chr2_1:12180660-12180679 | Msa0195340:intron | 30.0% |
| ! | AATCTTTTGTATCACAGGTT+GGG | - | chr2_1:12180661-12180680 | Msa0195340:intron | 30.0% |
| !!! | CTTTTTCAAGGAGAATAAGT+GGG | - | chr2_1:12181005-12181024 | Msa0195340:CDS | 30.0% |
| !!! | TTTTTCAAGGAGAATAAGTG+GGG | - | chr2_1:12181006-12181025 | Msa0195340:CDS | 30.0% |
| ACATGCATTATTATATGCAG+GGG | + | chr2_1:12181053-12181072 | None:intergenic | 30.0% | |
| GACATGCATTATTATATGCA+GGG | + | chr2_1:12181054-12181073 | None:intergenic | 30.0% | |
| ! | GAGAGTATGATAACATAGAT+TGG | - | chr2_1:12181120-12181139 | Msa0195340:intron | 30.0% |
| ! | ATTGTATTGTAGAAGGGTTT+TGG | + | chr2_1:12181170-12181189 | None:intergenic | 30.0% |
| !!! | TTTTTAGTTTCCCCATTTTG+AGG | - | chr2_1:12181190-12181209 | Msa0195340:intron | 30.0% |
| !!! | TTTTAGTTTCCCCATTTTGA+GGG | - | chr2_1:12181191-12181210 | Msa0195340:intron | 30.0% |
| ATACAAAATCCCCTCAAAAT+GGG | + | chr2_1:12181204-12181223 | None:intergenic | 30.0% | |
| AATACAAAATCCCCTCAAAA+TGG | + | chr2_1:12181205-12181224 | None:intergenic | 30.0% | |
| ! | TTATGGAATTTTGTGTTCTC+TGG | - | chr2_1:12181488-12181507 | Msa0195340:intron | 30.0% |
| !! | AAAGCAATAGAGTTTTTAGG+GGG | + | chr2_1:12181536-12181555 | None:intergenic | 30.0% |
| TTAATAACATTAAGGGTCTC+AGG | - | chr2_1:12181655-12181674 | Msa0195340:CDS | 30.0% | |
| !!! | ATTTTGGGATTTAATTGTGG+TGG | + | chr2_1:12181722-12181741 | None:intergenic | 30.0% |
| ACCACAATTAAATCCCAAAA+TGG | - | chr2_1:12181721-12181740 | Msa0195340:CDS | 30.0% | |
| !!! | TCCATTTTGGGATTTAATTG+TGG | + | chr2_1:12181725-12181744 | None:intergenic | 30.0% |
| TCAAACAATTTGATCGTCAA+TGG | + | chr2_1:12181937-12181956 | None:intergenic | 30.0% | |
| AAGGTTAAAAGCAAGAGTTA+GGG | + | chr2_1:12181991-12182010 | None:intergenic | 30.0% | |
| TAAGGTTAAAAGCAAGAGTT+AGG | + | chr2_1:12181992-12182011 | None:intergenic | 30.0% | |
| GATTTACAGAAAGGATGTTT+AGG | - | chr2_1:12182040-12182059 | Msa0195340:intron | 30.0% | |
| TCTCATGATGACAATTTAAG+TGG | + | chr2_1:12182367-12182386 | None:intergenic | 30.0% | |
| GCAATTAGTCAAAATTGAAG+AGG | + | chr2_1:12182411-12182430 | None:intergenic | 30.0% | |
| ! | GAATTTTGAATCATGATACG+AGG | - | chr2_1:12182523-12182542 | Msa0195340:CDS | 30.0% |
| TTGTAGACATTTGTTCACTT+AGG | - | chr2_1:12182617-12182636 | Msa0195340:five_prime_UTR | 30.0% | |
| !! | GATAGTGATTTTGACGAAGA+TGG | - | chr2_1:12178052-12178071 | Msa0195340:three_prime_UTR | 35.0% |
| GGAAGTTTAAAGATAGTGCT+AGG | - | chr2_1:12178164-12178183 | Msa0195340:CDS | 35.0% | |
| CAAAGAGATGAAGATGATGA+TGG | - | chr2_1:12178199-12178218 | Msa0195340:intron | 35.0% | |
| ! | TGATGATGATGATGAAGATG+AGG | - | chr2_1:12178225-12178244 | Msa0195340:intron | 35.0% |
| ! | ATGATGATGAAGATGAGGAT+GGG | - | chr2_1:12178230-12178249 | Msa0195340:intron | 35.0% |
| TCAGAAAAGCTATTGCTTCA+AGG | - | chr2_1:12178311-12178330 | Msa0195340:intron | 35.0% | |
| ! | TGATTTCAAAGCTACCCTTT+TGG | - | chr2_1:12178395-12178414 | Msa0195340:intron | 35.0% |
| ! | TGATTTCAATGTGACCCTTT+TGG | - | chr2_1:12178447-12178466 | Msa0195340:intron | 35.0% |
| !!! | AATGGGTTGTTTGACACTTT+TGG | - | chr2_1:12178548-12178567 | Msa0195340:intron | 35.0% |
| ! | GCATAAACAATGTGTTACTG+CGG | - | chr2_1:12178705-12178724 | Msa0195340:intron | 35.0% |
| TATCTGAGGATGATTCTAAG+GGG | - | chr2_1:12178734-12178753 | Msa0195340:intron | 35.0% | |
| !!! | TGTTGGATATTTTTTTGGGG+TGG | - | chr2_1:12179080-12179099 | Msa0195340:intron | 35.0% |
| GAATAGATTAGTACAGCTCT+AGG | - | chr2_1:12179102-12179121 | Msa0195340:intron | 35.0% | |
| TTATACTCCTTTCCCTTGTT+TGG | - | chr2_1:12179170-12179189 | Msa0195340:intron | 35.0% | |
| CTACAGATTTGGCCATAAAT+AGG | + | chr2_1:12179386-12179405 | None:intergenic | 35.0% | |
| CTATTTATGGCCAAATCTGT+AGG | - | chr2_1:12179384-12179403 | Msa0195340:intron | 35.0% | |
| !! | TAGTTGGGACTTGTTATTGT+TGG | - | chr2_1:12179420-12179439 | Msa0195340:intron | 35.0% |
| GAAAAGCCTGTAAAAGACAA+TGG | + | chr2_1:12179459-12179478 | None:intergenic | 35.0% | |
| !!! | TGTTTCTTCTCTGGCTTTTA+GGG | - | chr2_1:12179495-12179514 | Msa0195340:intron | 35.0% |
| AAACGATCCAGAAAATAGCT+CGG | + | chr2_1:12179530-12179549 | None:intergenic | 35.0% | |
| !! | AAAGAAAGGGTATTATCTGC+TGG | - | chr2_1:12179646-12179665 | Msa0195340:intron | 35.0% |
| TCGTAGTATGCAGTTGTTTA+AGG | - | chr2_1:12179675-12179694 | Msa0195340:intron | 35.0% | |
| ! | AAGAAACAGCCTTTGAAGAT+AGG | + | chr2_1:12179835-12179854 | None:intergenic | 35.0% |
| !! | TATCTTCAAAGGCTGTTTCT+TGG | - | chr2_1:12179834-12179853 | Msa0195340:intron | 35.0% |
| !! | ATCTTCAAAGGCTGTTTCTT+GGG | - | chr2_1:12179835-12179854 | Msa0195340:intron | 35.0% |
| GAAAAAGTCTCATGAGGAAA+TGG | + | chr2_1:12179873-12179892 | None:intergenic | 35.0% | |
| CATTCAGAAAAAGTCTCATG+AGG | + | chr2_1:12179879-12179898 | None:intergenic | 35.0% | |
| GATAGTGAAATACTACCCAA+CGG | - | chr2_1:12180126-12180145 | Msa0195340:intron | 35.0% | |
| ATGAAGCGGTTTAATGTCTT+TGG | + | chr2_1:12180534-12180553 | None:intergenic | 35.0% | |
| ATTGCAGTTGGAAATTTCAC+TGG | - | chr2_1:12180629-12180648 | Msa0195340:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | - | chr2_1:12180993-12181012 | Msa0195340:CDS | 35.0% |
| CCACTTATTCTCCTTGAAAA+AGG | + | chr2_1:12181007-12181026 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGAGAATAAG+TGG | - | chr2_1:12181004-12181023 | Msa0195340:CDS | 35.0% |
| GGACATGCATTATTATATGC+AGG | + | chr2_1:12181055-12181074 | None:intergenic | 35.0% | |
| !!! | TATTGTAGAAGGGTTTTGGA+GGG | + | chr2_1:12181166-12181185 | None:intergenic | 35.0% |
| !! | TTTAGTTTCCCCATTTTGAG+GGG | - | chr2_1:12181192-12181211 | Msa0195340:intron | 35.0% |
| TACAAAATCCCCTCAAAATG+GGG | + | chr2_1:12181203-12181222 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGGGTAAGAGTATT+AGG | + | chr2_1:12181523-12181542 | None:intergenic | 35.0% |
| TTAGAGTGCATTTGATAGAG+TGG | - | chr2_1:12181554-12181573 | Msa0195340:CDS | 35.0% | |
| ! | GCTGTAGCAATATCCATTTT+GGG | + | chr2_1:12181737-12181756 | None:intergenic | 35.0% |
| CAAAATGGATATTGCTACAG+CGG | - | chr2_1:12181736-12181755 | Msa0195340:CDS | 35.0% | |
| ACAAGTCTACTTCGTATAAC+TGG | + | chr2_1:12181826-12181845 | None:intergenic | 35.0% | |
| TGAATAATTGCAGCTGTTGT+TGG | - | chr2_1:12181900-12181919 | Msa0195340:intron | 35.0% | |
| ! | TTTGACTTCAGCTATGCTTA+AGG | + | chr2_1:12182010-12182029 | None:intergenic | 35.0% |
| CATAGCTGAAGTCAAATGTT+GGG | - | chr2_1:12182014-12182033 | Msa0195340:intron | 35.0% | |
| !! | ACGTTCATTAGTTTGTTGTC+TGG | - | chr2_1:12182150-12182169 | Msa0195340:intron | 35.0% |
| ! | TCAAGTGAGATGATTGATTC+AGG | + | chr2_1:12182183-12182202 | None:intergenic | 35.0% |
| AACTAACAGCTTTGCATAAG+TGG | - | chr2_1:12182222-12182241 | Msa0195340:CDS | 35.0% | |
| AATTGTCATCATGAGATCTG+AGG | - | chr2_1:12182371-12182390 | Msa0195340:CDS | 35.0% | |
| AAAGACAAAGGTTGCAGCTA+GGG | + | chr2_1:12177843-12177862 | None:intergenic | 40.0% | |
| GGTTAGGGTTTCAGAGATTT+GGG | + | chr2_1:12177904-12177923 | None:intergenic | 40.0% | |
| CGGGCATGATTGAATTGTTA+GGG | + | chr2_1:12177925-12177944 | None:intergenic | 40.0% | |
| CTCAGCATCTTGATCTTCAT+CGG | + | chr2_1:12178023-12178042 | None:intergenic | 40.0% | |
| !!! | GATGGTTTTGTTCCATCGAA+AGG | - | chr2_1:12178070-12178089 | Msa0195340:three_prime_UTR | 40.0% |
| TTTGTTCCATCGAAAGGTGA+AGG | - | chr2_1:12178076-12178095 | Msa0195340:three_prime_UTR | 40.0% | |
| TTGTTCCATCGAAAGGTGAA+GGG | - | chr2_1:12178077-12178096 | Msa0195340:three_prime_UTR | 40.0% | |
| ! | GATGATGATGAAGATGAGGA+TGG | - | chr2_1:12178229-12178248 | Msa0195340:intron | 40.0% |
| ! | TGATGATGAAGATGAGGATG+GGG | - | chr2_1:12178231-12178250 | Msa0195340:intron | 40.0% |
| GCTATCGACGAAGATGATAA+AGG | - | chr2_1:12178264-12178283 | Msa0195340:intron | 40.0% | |
| ! | TAAACAATGTGTTACTGCGG+TGG | - | chr2_1:12178708-12178727 | Msa0195340:intron | 40.0% |
| !! | AAGATGGAAGCATTGTGCAA+TGG | - | chr2_1:12178770-12178789 | Msa0195340:intron | 40.0% |
| !! | AGATGGAAGCATTGTGCAAT+GGG | - | chr2_1:12178771-12178790 | Msa0195340:intron | 40.0% |
| ! | GGAAATGTGAGAGGTATAAG+TGG | - | chr2_1:12178806-12178825 | Msa0195340:intron | 40.0% |
| ! | GTATAAGTGGCCCATTGATT+CGG | - | chr2_1:12178819-12178838 | Msa0195340:intron | 40.0% |
| GACTTCAGAACCGAATCAAT+GGG | + | chr2_1:12178832-12178851 | None:intergenic | 40.0% | |
| AAGTTCAGATGGTCGCTATT+TGG | - | chr2_1:12178918-12178937 | Msa0195340:intron | 40.0% | |
| AACGTTACCAAACAAGGGAA+AGG | + | chr2_1:12179180-12179199 | None:intergenic | 40.0% | |
| GAACGAACGTTACCAAACAA+GGG | + | chr2_1:12179185-12179204 | None:intergenic | 40.0% | |
| AGAACGAACGTTACCAAACA+AGG | + | chr2_1:12179186-12179205 | None:intergenic | 40.0% | |
| AGTCCAATACCCTACAGATT+TGG | + | chr2_1:12179397-12179416 | None:intergenic | 40.0% | |
| !! | AGGGTATTGGACTGTTTAGT+TGG | - | chr2_1:12179404-12179423 | Msa0195340:intron | 40.0% |
| !! | GGGTATTGGACTGTTTAGTT+GGG | - | chr2_1:12179405-12179424 | Msa0195340:intron | 40.0% |
| ! | TGTCTTTTACAGGCTTTTCC+TGG | - | chr2_1:12179460-12179479 | Msa0195340:intron | 40.0% |
| CTAAAAGCCAGAGAAGAAAC+AGG | + | chr2_1:12179496-12179515 | None:intergenic | 40.0% | |
| !!! | CTGTTTCTTCTCTGGCTTTT+AGG | - | chr2_1:12179494-12179513 | Msa0195340:intron | 40.0% |
| ACAACTGCATACTACGATCA+CGG | + | chr2_1:12179672-12179691 | None:intergenic | 40.0% | |
| TCCAAAAACAGAGCAATGGT+GGG | + | chr2_1:12179776-12179795 | None:intergenic | 40.0% | |
| TTCCAAAAACAGAGCAATGG+TGG | + | chr2_1:12179777-12179796 | None:intergenic | 40.0% | |
| TGAGGAATTCTTGTCTGGTT+CGG | - | chr2_1:12179999-12180018 | Msa0195340:CDS | 40.0% | |
| ! | ATGATGGTAGCATTGAGCTT+TGG | - | chr2_1:12180022-12180041 | Msa0195340:CDS | 40.0% |
| ! | TGATGGTAGCATTGAGCTTT+GGG | - | chr2_1:12180023-12180042 | Msa0195340:CDS | 40.0% |
| TGACGAACAATGGTGATTCT+CGG | + | chr2_1:12180408-12180427 | None:intergenic | 40.0% | |
| ! | AAGAGTGTACTGACGAACAA+TGG | + | chr2_1:12180418-12180437 | None:intergenic | 40.0% |
| ATTGTTCGTCAGTACACTCT+TGG | - | chr2_1:12180417-12180436 | Msa0195340:CDS | 40.0% | |
| TTGTTCGTCAGTACACTCTT+GGG | - | chr2_1:12180418-12180437 | Msa0195340:CDS | 40.0% | |
| ACCAACGGTACATTATGAAG+CGG | + | chr2_1:12180548-12180567 | None:intergenic | 40.0% | |
| ! | ATGTACCGTTGGTAAGTAGA+AGG | - | chr2_1:12180555-12180574 | Msa0195340:CDS | 40.0% |
| GCTATCCTTCTACTTACCAA+CGG | + | chr2_1:12180563-12180582 | None:intergenic | 40.0% | |
| GGTTGGGTTTGTCAATTCTT+TGG | - | chr2_1:12180677-12180696 | Msa0195340:intron | 40.0% | |
| TCAGCAAAATTCCTAGTTGC+TGG | - | chr2_1:12180711-12180730 | Msa0195340:intron | 40.0% | |
| AAATTCCTAGTTGCTGGAGT+TGG | - | chr2_1:12180717-12180736 | Msa0195340:intron | 40.0% | |
| AATTCCTAGTTGCTGGAGTT+GGG | - | chr2_1:12180718-12180737 | Msa0195340:intron | 40.0% | |
| !! | TTTCTCTTTGGCTCTGCTTA+CGG | - | chr2_1:12180812-12180831 | Msa0195340:CDS | 40.0% |
| !! | TTTTTGGTCAAGTAGCCTAG+TGG | - | chr2_1:12180971-12180990 | Msa0195340:CDS | 40.0% |
| AAAGGTGAATTCTAGCCACT+AGG | + | chr2_1:12180989-12181008 | None:intergenic | 40.0% | |
| !! | GTATTGTAGAAGGGTTTTGG+AGG | + | chr2_1:12181167-12181186 | None:intergenic | 40.0% |
| ! | AAAGAAGTGCAAGGGATGAA+GGG | + | chr2_1:12181269-12181288 | None:intergenic | 40.0% |
| ! | TAAAGAAGTGCAAGGGATGA+AGG | + | chr2_1:12181270-12181289 | None:intergenic | 40.0% |
| TTTGCAAGTTTAGAGGGGAA+GGG | + | chr2_1:12181319-12181338 | None:intergenic | 40.0% | |
| CTCTGTTTGCAAGTTTAGAG+GGG | + | chr2_1:12181324-12181343 | None:intergenic | 40.0% | |
| GCTCTGTTTGCAAGTTTAGA+GGG | + | chr2_1:12181325-12181344 | None:intergenic | 40.0% | |
| ! | CGCTGTAGCAATATCCATTT+TGG | + | chr2_1:12181738-12181757 | None:intergenic | 40.0% |
| AAAGCAAGAGTTAGGGTTGA+CGG | + | chr2_1:12181984-12182003 | None:intergenic | 40.0% | |
| GCATAGCTGAAGTCAAATGT+TGG | - | chr2_1:12182013-12182032 | Msa0195340:intron | 40.0% | |
| GTTGGGAGTGATTTACAGAA+AGG | - | chr2_1:12182031-12182050 | Msa0195340:intron | 40.0% | |
| ! | TTTTTACAGGAACCTCGTCT+AGG | - | chr2_1:12182295-12182314 | Msa0195340:CDS | 40.0% |
| AGAATACGTGAAGCTCGTAA+TGG | - | chr2_1:12182328-12182347 | Msa0195340:CDS | 40.0% | |
| TCCTACGTTGAAAAGACTTG+AGG | - | chr2_1:12182547-12182566 | Msa0195340:CDS | 40.0% | |
| ! | TCCTCAAGTCTTTTCAACGT+AGG | + | chr2_1:12182551-12182570 | None:intergenic | 40.0% |
| CAAAGACAAAGGTTGCAGCT+AGG | + | chr2_1:12177844-12177863 | None:intergenic | 45.0% | |
| GGGTTAGGGTTTCAGAGATT+TGG | + | chr2_1:12177905-12177924 | None:intergenic | 45.0% | |
| GCGGGCATGATTGAATTGTT+AGG | + | chr2_1:12177926-12177945 | None:intergenic | 45.0% | |
| TTCTTGCGGTTGTTCTTTGC+GGG | + | chr2_1:12177944-12177963 | None:intergenic | 45.0% | |
| CTTCTTGCGGTTGTTCTTTG+CGG | + | chr2_1:12177945-12177964 | None:intergenic | 45.0% | |
| AGCATCTTGATCTTCATCGG+CGG | + | chr2_1:12178020-12178039 | None:intergenic | 45.0% | |
| TGTTCCATCGAAAGGTGAAG+GGG | - | chr2_1:12178078-12178097 | Msa0195340:three_prime_UTR | 45.0% | |
| AGGAAACTACAGCTGAAGCT+AGG | - | chr2_1:12178116-12178135 | Msa0195340:exon | 45.0% | |
| !! | GAGTAGCTGAGGAGTATTTG+AGG | - | chr2_1:12178143-12178162 | Msa0195340:CDS | 45.0% |
| AGATAGTGCTAGGAGAGAGA+AGG | - | chr2_1:12178174-12178193 | Msa0195340:CDS | 45.0% | |
| GATGATAAAGGAGCAGCAAG+AGG | - | chr2_1:12178276-12178295 | Msa0195340:intron | 45.0% | |
| AGGGTTAAACTGGATGGTCA+TGG | - | chr2_1:12178661-12178680 | Msa0195340:intron | 45.0% | |
| GTTAAACTGGATGGTCATGG+TGG | - | chr2_1:12178664-12178683 | Msa0195340:intron | 45.0% | |
| ! | GGGTTTTCAGCTTCGAAAGA+TGG | - | chr2_1:12178754-12178773 | Msa0195340:intron | 45.0% |
| TGCAATGGGATGTTGAGAGT+GGG | - | chr2_1:12178785-12178804 | Msa0195340:intron | 45.0% | |
| TTGAGAGTGGGAAATGTGAG+AGG | - | chr2_1:12178797-12178816 | Msa0195340:intron | 45.0% | |
| GGACTTCAGAACCGAATCAA+TGG | + | chr2_1:12178833-12178852 | None:intergenic | 45.0% | |
| TTGAGGATCCTTCAAGCCAT+GGG | + | chr2_1:12178854-12178873 | None:intergenic | 45.0% | |
| TGCTTTGTAGCAGAACCTTG+AGG | + | chr2_1:12178871-12178890 | None:intergenic | 45.0% | |
| ACTTTGGCTGCAAGTTCAGA+TGG | - | chr2_1:12178907-12178926 | Msa0195340:intron | 45.0% | |
| ATGGTCGCTATTTGGCAACT+GGG | - | chr2_1:12178926-12178945 | Msa0195340:intron | 45.0% | |
| ATATATGGGATACGCGCACT+AGG | - | chr2_1:12178968-12178987 | Msa0195340:intron | 45.0% | |
| TATATGGGATACGCGCACTA+GGG | - | chr2_1:12178969-12178988 | Msa0195340:intron | 45.0% | |
| TGGCCAAATCTGTAGGGTAT+TGG | - | chr2_1:12179391-12179410 | Msa0195340:intron | 45.0% | |
| ! | TAGAGGTCCTGTTTCTTCTC+TGG | - | chr2_1:12179486-12179505 | Msa0195340:intron | 45.0% |
| !!! | TCTTCTCTGGCTTTTAGGGA+AGG | - | chr2_1:12179499-12179518 | Msa0195340:intron | 45.0% |
| !!! | GGAAGTACCGAGCTATTTTC+TGG | - | chr2_1:12179520-12179539 | Msa0195340:intron | 45.0% |
| ! | TCCCACCATTGCTCTGTTTT+TGG | - | chr2_1:12179772-12179791 | Msa0195340:CDS | 45.0% |
| ! | CAGCATTCTAAGGAAGATGC+AGG | + | chr2_1:12179964-12179983 | None:intergenic | 45.0% |
| !! | TTCTTGTCTGGTTCGGATGA+TGG | - | chr2_1:12180006-12180025 | Msa0195340:CDS | 45.0% |
| ! | GATGGTAGCATTGAGCTTTG+GGG | - | chr2_1:12180024-12180043 | Msa0195340:CDS | 45.0% |
| ATACTACCCAACGGTAACCT+AGG | - | chr2_1:12180135-12180154 | Msa0195340:intron | 45.0% | |
| GGTTTACCTAGGTTACCGTT+GGG | + | chr2_1:12180144-12180163 | None:intergenic | 45.0% | |
| AGGTTTACCTAGGTTACCGT+TGG | + | chr2_1:12180145-12180164 | None:intergenic | 45.0% | |
| AACAATGGTGATTCTCGGGA+TGG | + | chr2_1:12180403-12180422 | None:intergenic | 45.0% | |
| GACGAACAATGGTGATTCTC+GGG | + | chr2_1:12180407-12180426 | None:intergenic | 45.0% | |
| AAGGTCACTGTTCCTACAGA+CGG | + | chr2_1:12180456-12180475 | None:intergenic | 45.0% | |
| ACCGCTTCATAATGTACCGT+TGG | - | chr2_1:12180544-12180563 | Msa0195340:CDS | 45.0% | |
| TGCTTGGCTGTAATTGCAGT+TGG | - | chr2_1:12180617-12180636 | Msa0195340:intron | 45.0% | |
| !! | TTCTCTTTGGCTCTGCTTAC+GGG | - | chr2_1:12180813-12180832 | Msa0195340:CDS | 45.0% |
| ATTATTATATGCAGGGGCCG+GGG | + | chr2_1:12181047-12181066 | None:intergenic | 45.0% | |
| CATTATTATATGCAGGGGCC+GGG | + | chr2_1:12181048-12181067 | None:intergenic | 45.0% | |
| GCATTATTATATGCAGGGGC+CGG | + | chr2_1:12181049-12181068 | None:intergenic | 45.0% | |
| ! | TGCAAGGGATGAAGGGTTTT+GGG | + | chr2_1:12181262-12181281 | None:intergenic | 45.0% |
| AGTTTAGAGGGGAAGGGATA+GGG | + | chr2_1:12181313-12181332 | None:intergenic | 45.0% | |
| AAGTTTAGAGGGGAAGGGAT+AGG | + | chr2_1:12181314-12181333 | None:intergenic | 45.0% | |
| GTTTGCAAGTTTAGAGGGGA+AGG | + | chr2_1:12181320-12181339 | None:intergenic | 45.0% | |
| GGCTCTGTTTGCAAGTTTAG+AGG | + | chr2_1:12181326-12181345 | None:intergenic | 45.0% | |
| AAGGGTCTCAGGTCTAGATT+TGG | - | chr2_1:12181666-12181685 | Msa0195340:CDS | 45.0% | |
| CACTCACTCAGTTAGGTTTC+AGG | - | chr2_1:12181692-12181711 | Msa0195340:CDS | 45.0% | |
| TAGGCATCTATGAGTAAGCG+AGG | - | chr2_1:12182636-12182655 | Msa0195340:five_prime_UTR | 45.0% | |
| TCTATGAGTAAGCGAGGCTT+TGG | - | chr2_1:12182642-12182661 | Msa0195340:five_prime_UTR | 45.0% | |
| !!! | TCAATATATATTTTTTTTTT+TGG | - | chr2_1:12180955-12180974 | Msa0195340:CDS | 5.0% |
| GGTCGCGTGAATTCTTCTTG+CGG | + | chr2_1:12177958-12177977 | None:intergenic | 50.0% | |
| !! | GCGACCCATTTTTCGACGAT+GGG | - | chr2_1:12177972-12177991 | Msa0195340:three_prime_UTR | 50.0% |
| TGGGCCCATCGTCGAAAAAT+GGG | + | chr2_1:12177979-12177998 | None:intergenic | 50.0% | |
| TGTTCCCCTTCACCTTTCGA+TGG | + | chr2_1:12178085-12178104 | None:intergenic | 50.0% | |
| ATCGAAAGGTGAAGGGGAAC+AGG | - | chr2_1:12178084-12178103 | Msa0195340:three_prime_UTR | 50.0% | |
| AGCTAGGAAGAGAGTAGCTG+AGG | - | chr2_1:12178132-12178151 | Msa0195340:CDS | 50.0% | |
| ATGAAGATGAGGATGGGGCA+AGG | - | chr2_1:12178236-12178255 | Msa0195340:intron | 50.0% | |
| TGAAGATGAGGATGGGGCAA+GGG | - | chr2_1:12178237-12178256 | Msa0195340:intron | 50.0% | |
| !! | TACTGCGGTGGCTTTATCTG+AGG | - | chr2_1:12178720-12178739 | Msa0195340:intron | 50.0% |
| GTGCAATGGGATGTTGAGAG+TGG | - | chr2_1:12178784-12178803 | Msa0195340:intron | 50.0% | |
| !! | GATTCGGTTCTGAAGTCCCA+TGG | - | chr2_1:12178835-12178854 | Msa0195340:intron | 50.0% |
| ! | TCTGAAGTCCCATGGCTTGA+AGG | - | chr2_1:12178843-12178862 | Msa0195340:intron | 50.0% |
| CTTGAGGATCCTTCAAGCCA+TGG | + | chr2_1:12178855-12178874 | None:intergenic | 50.0% | |
| CATGGCTTGAAGGATCCTCA+AGG | - | chr2_1:12178853-12178872 | Msa0195340:intron | 50.0% | |
| GATGGTCGCTATTTGGCAAC+TGG | - | chr2_1:12178925-12178944 | Msa0195340:intron | 50.0% | |
| TGGTCGCTATTTGGCAACTG+GGG | - | chr2_1:12178927-12178946 | Msa0195340:intron | 50.0% | |
| ! | CAGGCTTTTCCTGGTCATAG+AGG | - | chr2_1:12179469-12179488 | Msa0195340:intron | 50.0% |
| GAAACAGGACCTCTATGACC+AGG | + | chr2_1:12179481-12179500 | None:intergenic | 50.0% | |
| AATGGTGATTCTCGGGATGG+TGG | + | chr2_1:12180400-12180419 | None:intergenic | 50.0% | |
| !! | TTTGGCTCTGCTTACGGGTT+CGG | - | chr2_1:12180818-12180837 | Msa0195340:CDS | 50.0% |
| ! | AGGAGAATAAGTGGGGTGTC+CGG | - | chr2_1:12181013-12181032 | Msa0195340:CDS | 50.0% |
| TGAGCATAGCTCAGTTGGGA+GGG | + | chr2_1:12181076-12181095 | None:intergenic | 50.0% | |
| TCCCAACTGAGCTATGCTCA+CGG | - | chr2_1:12181076-12181095 | Msa0195340:intron | 50.0% | |
| !!! | AGGGATGAAGGGTTTTGGGA+GGG | + | chr2_1:12181258-12181277 | None:intergenic | 50.0% |
| !!! | AAGGGATGAAGGGTTTTGGG+AGG | + | chr2_1:12181259-12181278 | None:intergenic | 50.0% |
| ! | GTGCAAGGGATGAAGGGTTT+TGG | + | chr2_1:12181263-12181282 | None:intergenic | 50.0% |
| GAAGGGATAGGGAGAGCTTT+GGG | + | chr2_1:12181302-12181321 | None:intergenic | 50.0% | |
| TTGGCTGCACTCACTCAGTT+AGG | - | chr2_1:12181685-12181704 | Msa0195340:CDS | 50.0% | |
| GATATTGCTACAGCGGCTGA+CGG | - | chr2_1:12181743-12181762 | Msa0195340:CDS | 50.0% | |
| TACAGGAACCTCGTCTAGGA+AGG | - | chr2_1:12182299-12182318 | Msa0195340:CDS | 50.0% | |
| !! | CGCGACCCATTTTTCGACGA+TGG | - | chr2_1:12177971-12177990 | Msa0195340:three_prime_UTR | 55.0% |
| GTGGGCCCATCGTCGAAAAA+TGG | + | chr2_1:12177980-12177999 | None:intergenic | 55.0% | |
| AGGGGAACAGGAGTCTGAAG+AGG | - | chr2_1:12178096-12178115 | Msa0195340:three_prime_UTR | 55.0% | |
| AAGGAGCAGCAAGAGGAGAG+TGG | - | chr2_1:12178283-12178302 | Msa0195340:intron | 55.0% | |
| GGTCGCTATTTGGCAACTGG+GGG | - | chr2_1:12178928-12178947 | Msa0195340:intron | 55.0% | |
| TCAGTGCAGTGACCGTCTGT+AGG | - | chr2_1:12180441-12180460 | Msa0195340:CDS | 55.0% | |
| AACAGTGACCTTGCCGCATC+TGG | - | chr2_1:12180464-12180483 | Msa0195340:CDS | 55.0% | |
| ACCATTACCCGCACCAGATG+CGG | + | chr2_1:12180480-12180499 | None:intergenic | 55.0% | |
| TGCTTACGGGTTCGGAGAGA+AGG | - | chr2_1:12180826-12180845 | Msa0195340:CDS | 55.0% | |
| GCTTACGGGTTCGGAGAGAA+GGG | - | chr2_1:12180827-12180846 | Msa0195340:CDS | 55.0% | |
| CTTACGGGTTCGGAGAGAAG+GGG | - | chr2_1:12180828-12180847 | Msa0195340:CDS | 55.0% | |
| TTTGGGGGGATGGGAGTAGA+GGG | - | chr2_1:12180861-12180880 | Msa0195340:CDS | 55.0% | |
| ! | GGAGAATAAGTGGGGTGTCC+GGG | - | chr2_1:12181014-12181033 | Msa0195340:CDS | 55.0% |
| ! | GAGAATAAGTGGGGTGTCCG+GGG | - | chr2_1:12181015-12181034 | Msa0195340:CDS | 55.0% |
| GTGAGCATAGCTCAGTTGGG+AGG | + | chr2_1:12181077-12181096 | None:intergenic | 55.0% | |
| CCCGTGAGCATAGCTCAGTT+GGG | + | chr2_1:12181080-12181099 | None:intergenic | 55.0% | |
| CCCAACTGAGCTATGCTCAC+GGG | - | chr2_1:12181077-12181096 | Msa0195340:intron | 55.0% | |
| CCAACTGAGCTATGCTCACG+GGG | - | chr2_1:12181078-12181097 | Msa0195340:intron | 55.0% | |
| !! | TTGGGAGGGGATGGCTTTGA+GGG | + | chr2_1:12181244-12181263 | None:intergenic | 55.0% |
| ! | TTTGGGAGGGGATGGCTTTG+AGG | + | chr2_1:12181245-12181264 | None:intergenic | 55.0% |
| !!! | TGAAGGGTTTTGGGAGGGGA+TGG | + | chr2_1:12181253-12181272 | None:intergenic | 55.0% |
| !!! | GGGATGAAGGGTTTTGGGAG+GGG | + | chr2_1:12181257-12181276 | None:intergenic | 55.0% |
| GGAAGGGATAGGGAGAGCTT+TGG | + | chr2_1:12181303-12181322 | None:intergenic | 55.0% | |
| AGGAACCTCGTCTAGGAAGG+TGG | - | chr2_1:12182302-12182321 | Msa0195340:CDS | 55.0% | |
| GGAACCTCGTCTAGGAAGGT+GGG | - | chr2_1:12182303-12182322 | Msa0195340:CDS | 55.0% | |
| GAACCTCGTCTAGGAAGGTG+GGG | - | chr2_1:12182304-12182323 | Msa0195340:CDS | 55.0% | |
| GCTACTCTGCGGCGTTTGGT+GGG | + | chr2_1:12177998-12178017 | None:intergenic | 60.0% | |
| CTTCATCGGCGGCTACTCTG+CGG | + | chr2_1:12178009-12178028 | None:intergenic | 60.0% | |
| !! | GCGCACTAGGGAGCATCTTC+AGG | - | chr2_1:12178981-12179000 | Msa0195340:intron | 60.0% |
| TGACCTTGCCGCATCTGGTG+CGG | - | chr2_1:12180469-12180488 | Msa0195340:CDS | 60.0% | |
| CCTGCCCAACTCCAGCAACT+AGG | + | chr2_1:12180725-12180744 | None:intergenic | 60.0% | |
| CCTAGTTGCTGGAGTTGGGC+AGG | - | chr2_1:12180722-12180741 | Msa0195340:intron | 60.0% | |
| AGAAGGGGAGGGGAAGGCTT+TGG | - | chr2_1:12180843-12180862 | Msa0195340:CDS | 60.0% | |
| GAAGGGGAGGGGAAGGCTTT+GGG | - | chr2_1:12180844-12180863 | Msa0195340:CDS | 60.0% | |
| AAGGGGAGGGGAAGGCTTTG+GGG | - | chr2_1:12180845-12180864 | Msa0195340:CDS | 60.0% | |
| ! | CTTTGGGGGGATGGGAGTAG+AGG | - | chr2_1:12180860-12180879 | Msa0195340:CDS | 60.0% |
| CCCCGTGAGCATAGCTCAGT+TGG | + | chr2_1:12181081-12181100 | None:intergenic | 60.0% | |
| !! | TGGGAGGGGATGGCTTTGAG+GGG | + | chr2_1:12181243-12181262 | None:intergenic | 60.0% |
| CTTCCCCACCTTCCTAGACG+AGG | + | chr2_1:12182310-12182329 | None:intergenic | 60.0% | |
| GGCTACTCTGCGGCGTTTGG+TGG | + | chr2_1:12177999-12178018 | None:intergenic | 65.0% | |
| GACCTTGCCGCATCTGGTGC+GGG | - | chr2_1:12180470-12180489 | Msa0195340:CDS | 65.0% | |
| TACCCGCACCAGATGCGGCA+AGG | + | chr2_1:12180475-12180494 | None:intergenic | 65.0% | |
| GCCGCATCTGGTGCGGGTAA+TGG | - | chr2_1:12180476-12180495 | Msa0195340:CDS | 65.0% | |
| ACGGGTTCGGAGAGAAGGGG+AGG | - | chr2_1:12180831-12180850 | Msa0195340:CDS | 65.0% | |
| CGGGTTCGGAGAGAAGGGGA+GGG | - | chr2_1:12180832-12180851 | Msa0195340:CDS | 65.0% | |
| GGGTTCGGAGAGAAGGGGAG+GGG | - | chr2_1:12180833-12180852 | Msa0195340:CDS | 65.0% | |
| TCGGAGAGAAGGGGAGGGGA+AGG | - | chr2_1:12180837-12180856 | Msa0195340:CDS | 65.0% | |
| ! | AGGGGAGGGGAAGGCTTTGG+GGG | - | chr2_1:12180846-12180865 | Msa0195340:CDS | 65.0% |
| !! | AGGGGAAGGCTTTGGGGGGA+TGG | - | chr2_1:12180851-12180870 | Msa0195340:CDS | 65.0% |
| !! | GGGGAAGGCTTTGGGGGGAT+GGG | - | chr2_1:12180852-12180871 | Msa0195340:CDS | 65.0% |
| GGCGGCTACTCTGCGGCGTT+TGG | + | chr2_1:12178002-12178021 | None:intergenic | 70.0% | |
| !! | GGGGAGGGGAAGGCTTTGGG+GGG | - | chr2_1:12180847-12180866 | Msa0195340:CDS | 70.0% |
| GGTGTCCGGGGTTCGAACCC+CGG | - | chr2_1:12181027-12181046 | Msa0195340:intron | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr2_1:12181035-12181054 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 12177834 | 12182674 | 12177834 | ID=Msa0195340;Name=Msa0195340 |
| chr2_1 | mRNA | 12177834 | 12182674 | 12177834 | ID=Msa0195340-mRNA-1;Parent=Msa0195340;Name=Msa0195340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=104|1|1|1|1|1|7|290|504 |
| chr2_1 | exon | 12177834 | 12178204 | 12177834 | ID=Msa0195340-mRNA-1:exon:5296;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12179765 | 12179830 | 12179765 | ID=Msa0195340-mRNA-1:exon:5295;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12179943 | 12180121 | 12179943 | ID=Msa0195340-mRNA-1:exon:5294;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12180352 | 12180580 | 12180352 | ID=Msa0195340-mRNA-1:exon:5293;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12180812 | 12181036 | 12180812 | ID=Msa0195340-mRNA-1:exon:5292;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12181506 | 12181845 | 12181506 | ID=Msa0195340-mRNA-1:exon:5291;Parent=Msa0195340-mRNA-1 |
| chr2_1 | exon | 12182176 | 12182674 | 12182176 | ID=Msa0195340-mRNA-1:exon:5290;Parent=Msa0195340-mRNA-1 |
| chr2_1 | five_prime_UTR | 12182571 | 12182674 | 12182571 | ID=Msa0195340-mRNA-1:five_prime_utr;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12182176 | 12182570 | 12182176 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12181506 | 12181845 | 12181506 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12180812 | 12181036 | 12180812 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12180352 | 12180580 | 12180352 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12179943 | 12180121 | 12179943 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12179765 | 12179830 | 12179765 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | CDS | 12178124 | 12178204 | 12178124 | ID=Msa0195340-mRNA-1:cds;Parent=Msa0195340-mRNA-1 |
| chr2_1 | three_prime_UTR | 12177834 | 12178123 | 12177834 | ID=Msa0195340-mRNA-1:three_prime_utr;Parent=Msa0195340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
