AlfalfaGEDB | Msa1012740

M. sativa cultivar zhongmu-4 / Msa1012740

KEGG: K02936
GO: GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01248.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012740	XP_013447916.1	99.231	260	2	0	1	260	1	260	0.0	523

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012740	sp\|P0DKK7\|RL7A2_ORYSJ	88.846	260	27	1	1	260	1	258	3.92e-170	473

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012740	A0A072TYM4	99.231	260	2	0	1	260	1	260	0.0	523

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1012740	0.842633	2.294863e-58	-8.615850e-47
Msa0002790	Msa1012740	0.838399	2.942942e-57	-8.615850e-47
Msa0003720	Msa1012740	0.822278	2.579962e-53	-8.615850e-47
Msa0003780	Msa1012740	0.829229	5.785630e-55	-8.615850e-47
Msa0022970	Msa1012740	0.848363	6.430481e-60	-8.615850e-47
Msa0024710	Msa1012740	0.818011	2.448624e-52	-8.615850e-47
Msa0027260	Msa1012740	0.809207	2.120415e-50	-8.615850e-47
Msa0028930	Msa1012740	0.801727	7.853771e-49	-8.615850e-47
Msa0032090	Msa1012740	0.812462	4.188006e-51	-8.615850e-47
Msa0032810	Msa1012740	0.833845	4.220349e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012740	MtrunA17_Chr7g0224411	99.231	260	2	0	1	260	1	260	0.0	523
Msa1012740	MtrunA17_Chr4g0037721	92.692	260	18	1	1	260	1	259	4.62e-178	489

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012740	AT3G62870.1	82.308	260	42	1	1	260	1	256	2.34e-160	445
Msa1012740	AT2G47610.1	86.008	243	34	0	18	260	15	257	5.17e-159	442

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Find 87 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTAGTGGTGTTTGTG+AGG	0.666182	7_1:-18184188	None:intergenic
AAATAAATCAGCAAAAGTGC+AGG	0.578724	7_1:-18186800	None:intergenic
AACAGGAAGAAGTGGGGTGG+TGG	0.477152	7_1:+18186556	Msa1012740:CDS
AACCTTGTCAAATCTCTCTT+TGG	0.311553	7_1:-18184493	None:intergenic
AAGCCTATTAATGTGAAATA+TGG	0.287894	7_1:+18185967	Msa1012740:CDS
AAGGGCCCAAGCCGAATCTG+AGG	0.570757	7_1:+18185924	Msa1012740:CDS
AAGTGGGGTGGTGGTATTAT+GGG	0.327204	7_1:+18186565	Msa1012740:CDS
AATTCCCTACTGCATTGTCA+AGG	0.570742	7_1:+18186207	Msa1012740:CDS
ACCCAATTGAGCTCGTTGTC+TGG	0.417238	7_1:+18186158	Msa1012740:CDS
ACGACAAATTTGAGGAAAAC+AGG	0.415015	7_1:+18186539	Msa1012740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTGAGGTGAACTTAAAA+GGG	-	chr7_1:18184177-18184196	None:intergenic	30.0%
TCAAACAACATCAACAACAA+TGG	+	chr7_1:18184247-18184266	Msa1012740:exon	30.0%
ATTTGACAAGGTTTGTGAAA+TGG	+	chr7_1:18184503-18184522	Msa1012740:CDS	30.0%
AAGACACTCGATAAAAATCT+CGG	+	chr7_1:18184607-18184626	Msa1012740:CDS	30.0%
TGTTTATTATGTTGAGTGCT+TGG	+	chr7_1:18184982-18185001	Msa1012740:intron	30.0%
GATTTCGTGTTAATGTGAAA+TGG	+	chr7_1:18185113-18185132	Msa1012740:intron	30.0%
ATTGGGTGGTTGTTAAAATT+TGG	+	chr7_1:18185140-18185159	Msa1012740:intron	30.0%
TTGGGTGGTTGTTAAAATTT+GGG	+	chr7_1:18185141-18185160	Msa1012740:intron	30.0%
GAAGTTTCATTTCTTTGTTC+TGG	+	chr7_1:18185224-18185243	Msa1012740:intron	30.0%
TTGGATAGTATGTGATAGTT+TGG	+	chr7_1:18185368-18185387	Msa1012740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	18184153	18186951	18184153	ID=Msa1012740;Name=Msa1012740
chr7_1	mRNA	18184153	18186951	18184153	ID=Msa1012740-mRNA-1;Parent=Msa1012740;Name=Msa1012740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=113\|1\|1\|1\|1\|1\|6\|291\|260
chr7_1	exon	18184153	18184268	18184153	ID=Msa1012740-mRNA-1:exon:4530;Parent=Msa1012740-mRNA-1
chr7_1	exon	18184373	18184628	18184373	ID=Msa1012740-mRNA-1:exon:4531;Parent=Msa1012740-mRNA-1
chr7_1	exon	18185851	18186020	18185851	ID=Msa1012740-mRNA-1:exon:4532;Parent=Msa1012740-mRNA-1
chr7_1	exon	18186121	18186249	18186121	ID=Msa1012740-mRNA-1:exon:4533;Parent=Msa1012740-mRNA-1
chr7_1	exon	18186333	18186425	18186333	ID=Msa1012740-mRNA-1:exon:4534;Parent=Msa1012740-mRNA-1
chr7_1	exon	18186529	18186951	18186529	ID=Msa1012740-mRNA-1:exon:4535;Parent=Msa1012740-mRNA-1
chr7_1	five_prime_UTR	18184153	18184265	18184153	ID=Msa1012740-mRNA-1:five_prime_utr;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18184266	18184268	18184266	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18184373	18184628	18184373	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18185851	18186020	18185851	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18186121	18186249	18186121	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18186333	18186425	18186333	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	CDS	18186529	18186660	18186529	ID=Msa1012740-mRNA-1:cds;Parent=Msa1012740-mRNA-1
chr7_1	three_prime_UTR	18186661	18186951	18186661	ID=Msa1012740-mRNA-1:three_prime_utr;Parent=Msa1012740-mRNA-1

Gene Sequence

>Msa1012740

ATGGCACCAAAGCGCGGTGGAAAAGCACCAGTTGCAGCAGCGAAGAAGAATACAGCACTGAAAGTGGTGAACCCACTTTTTGAGAAGAGGCCAAAGCAATTTGGGATCGGTGGTGCTTTGCCACCAAAGAGAGATTTGACAAGGTTTGTGAAATGGCCTAAGACGGTGCAGATTCAGAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCTGCTCTTAACCAGTTCACTAAGACACTCGATAAAAATCTCGCAACAAACCTTTTCAAGATGCTCCTCAAGTACAGGCCTGAGGACAAAGCTGAAAAGAAGGAACGTCTCTTGAAAAGGGCCCAAGCCGAATCTGAGGGCAAAACAGTCGAGACAAAGAAGCCTATTAATGTGAAATATGGACTCAACCATGTTACCTATCTTATTGAGCAGAACAAGGCACAGCTGGTCGTGATTGCTCACGATGTCGACCCAATTGAGCTCGTTGTCTGGCTTCCAGCTTTGTGCAGAAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCACGTTTGGGATCAATTGTTCACAAGAAAACTGCTTCCGTTTTGTGCTTGACAACCGTCAAGAATGAAGACAAAATGGAATTCAGCAGAATCCTAGAGGCCATCAAGGCTAACTTTAACGACAAATTTGAGGAAAACAGGAAGAAGTGGGGTGGTGGTATTATGGGTTCCAAATCTCAAGCGAAAACAAAGGCCAAAGAAAGACTCATTGCCAAGGAAGCTGCTCAAAGAATGACCTAG

Protein sequence

>Msa1012740

MAPKRGGKAPVAAAKKNTALKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAESEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKFEENRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT*