AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204020 MtrunA17_Chr2g0302041 94.737 209 9 1 1 209 1 207 4.68e-144 399
Msa0204020 MtrunA17_Chr4g0069721 57.463 134 49 3 38 168 25 153 4.86e-43 142
Msa0204020 MtrunA17_Chr5g0399851 33.846 130 55 4 57 176 20 128 5.35e-15 69.3
Msa0204020 MtrunA17_Chr2g0301131 31.250 128 65 3 58 168 112 233 2.35e-13 67.0
Msa0204020 MtrunA17_Chr4g0070271 31.148 122 47 3 49 168 90 176 4.16e-12 62.8
Msa0204020 MtrunA17_Chr5g0399881 29.825 114 63 2 58 171 44 140 6.51e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204020 AT5G20900.1 53.448 116 46 4 58 171 57 166 2.47e-31 113
Msa0204020 AT3G43440.1 38.760 129 53 4 57 183 130 234 3.69e-15 72.0
Msa0204020 AT3G43440.2 36.154 130 57 4 56 183 43 148 9.94e-15 68.9
Msa0204020 AT1G74950.1 35.484 124 51 3 59 168 120 228 4.06e-13 66.6
Msa0204020 AT1G19180.2 34.746 118 61 4 54 168 56 160 1.78e-12 63.9
Msa0204020 AT1G19180.1 34.746 118 61 4 54 168 122 226 2.68e-12 64.3
Msa0204020 AT1G19180.3 34.746 118 61 4 54 168 122 226 2.68e-12 64.3

Find 66 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGCCTGATGTTGTTAT+TGG 0.216843 2_1:+28831986 Msa0204020:three_prime_UTR
CAGCTTACCATCTTCTATAA+TGG 0.263317 2_1:+28830867 Msa0204020:CDS
ACTCAAGTATCTTCCATTCT+TGG 0.273933 2_1:-28832012 None:intergenic
TTCCTTCACCTGTTCCTTCA+AGG 0.303820 2_1:+28831109 Msa0204020:CDS
TGAAAGAAGAGAATTGTTAA+AGG 0.334877 2_1:-28828079 None:intergenic
TCCTTCATTGAAACCGAATC+TGG 0.348326 2_1:-28831574 None:intergenic
TTACATAAACAGTGATTCAT+AGG 0.354830 2_1:+28831964 Msa0204020:three_prime_UTR
TTGAGCAGAATTCTAGTGTT+TGG 0.362255 2_1:+28831633 Msa0204020:exon
AAAGTAACCGGCAATGATTA+TGG 0.369608 2_1:+28827959 Msa0204020:five_prime_UTR
TTTAGGTCAATGCCAGCATC+TGG 0.377821 2_1:+28830816 Msa0204020:intron
TGCTGACAATTCGCCAGATT+CGG 0.379407 2_1:+28831561 Msa0204020:CDS
TCTTCTCCTATTGCTGTTGA+TGG 0.379691 2_1:+28828187 Msa0204020:CDS
TTATCATTTATGTGTTCTTT+CGG 0.382375 2_1:+28831656 Msa0204020:three_prime_UTR
ACAGGTGAAGGAACGGGAAC+GGG 0.383655 2_1:-28831099 None:intergenic
AGTGAATGTCTGCGTGCTAT+TGG 0.383673 2_1:-28831346 None:intergenic
CTCAAGTATCTTCCATTCTT+GGG 0.392502 2_1:-28832011 None:intergenic
CTGCAGATAGAATTCTTTGC+AGG 0.395317 2_1:-28831189 None:intergenic
AGCTTACCATCTTCTATAAT+GGG 0.398580 2_1:+28830868 Msa0204020:CDS
GCCAGATTCGGTTTCAATGA+AGG 0.420770 2_1:+28831573 Msa0204020:CDS
CACATGTTGCTTAAAGTAAC+CGG 0.424321 2_1:+28827947 Msa0204020:five_prime_UTR
CTAGCACCATCAACAGCAAT+AGG 0.441302 2_1:-28828193 None:intergenic
GCTAGCTCCAACATGGTTGA+GGG 0.442261 2_1:+28828211 Msa0204020:CDS
AATGGATGGTGTTACTGTTA+AGG 0.443386 2_1:+28828135 Msa0204020:exon
ACTTCAAAGTTGCATCTCTC+TGG 0.448576 2_1:+28831785 Msa0204020:three_prime_UTR
TGGGATCCAATAACAACATC+AGG 0.454751 2_1:-28831992 None:intergenic
ATTTATGTGTTCTTTCGGTA+AGG 0.456656 2_1:+28831661 Msa0204020:three_prime_UTR
TTGTTATTGGATCCCAAGAA+TGG 0.461503 2_1:+28831999 Msa0204020:three_prime_UTR
TGACCAACCATAATCATTGC+CGG 0.463542 2_1:-28827966 None:intergenic
ATAGAATTCTTTGCAGGAAA+GGG 0.465810 2_1:-28831183 None:intergenic
CTTCTTCGTTTCACTAGACT+TGG 0.471119 2_1:-28831061 None:intergenic
TGCTAGCTCCAACATGGTTG+AGG 0.475742 2_1:+28828210 Msa0204020:CDS
GAAAGAAGAGAATTGTTAAA+GGG 0.475785 2_1:-28828078 None:intergenic
TGATGGAATTCCTGCAGAAA+AGG 0.477638 2_1:+28830905 Msa0204020:CDS
GGGAGTATTTGTATCTATGA+TGG 0.478209 2_1:+28830888 Msa0204020:CDS
GCAGTTCCATGTGGCGAAGA+AGG 0.484372 2_1:-28831132 None:intergenic
TCTAGAACAGTAAACTTCTC+TGG 0.487430 2_1:-28828163 None:intergenic
TGTGGCGAAGAAGGCCTTGA+AGG 0.491077 2_1:-28831123 None:intergenic
CTGCAAAGAATTCTATCTGC+AGG 0.491501 2_1:+28831190 Msa0204020:CDS
AATACTCCCATTATAGAAGA+TGG 0.513403 2_1:-28830874 None:intergenic
TTTATGTGTTCTTTCGGTAA+GGG 0.515174 2_1:+28831662 Msa0204020:three_prime_UTR
TTCTTCAGAAGCGTCGAGAC+AGG 0.516859 2_1:+28831377 Msa0204020:CDS
ACTGGATTCATTCCAGATGC+TGG 0.517894 2_1:-28830828 None:intergenic
GATAGAATTCTTTGCAGGAA+AGG 0.520134 2_1:-28831184 None:intergenic
AACAGGTGAAGGAACGGGAA+CGG 0.522969 2_1:-28831100 None:intergenic
GAAGAAGGCCTTGAAGGAAC+AGG 0.524051 2_1:-28831117 None:intergenic
GCTCAAGATGCAGATATAGT+TGG 0.526009 2_1:-28831616 None:intergenic
GAAGGAACAGGTGAAGGAAC+GGG 0.528287 2_1:-28831105 None:intergenic
TGAGTTGTATTAGCAATCAC+TGG 0.534299 2_1:-28830846 None:intergenic
TCAAGGCCTTCTTCGCCACA+TGG 0.540794 2_1:+28831126 Msa0204020:CDS
AATTCTATCTGCAGGCTGCA+AGG 0.555717 2_1:+28831198 Msa0204020:CDS
CATTGACCCCTCAACCATGT+TGG 0.571586 2_1:-28828218 None:intergenic
TGATAATATCGCTTCACCAC+AGG 0.571663 2_1:+28831155 Msa0204020:CDS
GGCCTTGAAGGAACAGGTGA+AGG 0.574210 2_1:-28831111 None:intergenic
TGAAGGAACAGGTGAAGGAA+CGG 0.580717 2_1:-28831106 None:intergenic
GTTGGCTGAAATTCCTCCCG+TGG 0.585328 2_1:-28831598 None:intergenic
AACAAAGGTAGCTGACAACA+TGG 0.591184 2_1:+28831525 Msa0204020:CDS
GGTTTCAATGAAGGAACCAC+GGG 0.597401 2_1:+28831582 Msa0204020:CDS
TAACCGGCAATGATTATGGT+TGG 0.602717 2_1:+28827963 Msa0204020:five_prime_UTR
TGATGGTGCTAGCTCCAACA+TGG 0.603125 2_1:+28828204 Msa0204020:CDS
TTCAATGAAGGAACCACGGG+AGG 0.608188 2_1:+28831585 Msa0204020:CDS
GACAACATGGAGAACAACTT+CGG 0.616517 2_1:+28831538 Msa0204020:CDS
ATTATCGAACATCAACACAT+TGG 0.617723 2_1:-28831895 None:intergenic
CGGTTTCAATGAAGGAACCA+CGG 0.627139 2_1:+28831581 Msa0204020:CDS
GCAGGAAAGGGATGTGCCTG+TGG 0.648722 2_1:-28831171 None:intergenic
CTAGCTCCAACATGGTTGAG+GGG 0.656060 2_1:+28828212 Msa0204020:CDS
ATATTATCAGCAGTTCCATG+TGG 0.739266 2_1:-28831141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATGTTTTTTTTTTTTT+TGG + chr2_1:28828438-28828457 Msa0204020:intron 10.0%
!! AAGTATAAAAAATTGATATA+AGG + chr2_1:28830395-28830414 Msa0204020:intron 10.0%
!!! TTGAATGTTTTTTTTTTTTT+TGG + chr2_1:28828438-28828457 Msa0204020:intron 10.0%
!! AAGTATAAAAAATTGATATA+AGG + chr2_1:28830395-28830414 Msa0204020:intron 10.0%
!!! AAAAACTTTGCAAAAATTTT+TGG + chr2_1:28828044-28828063 Msa0204020:five_prime_UTR 15.0%
!!! ATAAAAAAAACATGCTTTTT+TGG - chr2_1:28828284-28828303 None:intergenic 15.0%
!! AATTGGAAACAAAAAAAAAA+GGG - chr2_1:28828364-28828383 None:intergenic 15.0%
!! AAATTGGAAACAAAAAAAAA+AGG - chr2_1:28828365-28828384 None:intergenic 15.0%
!!! TAACTTGGTTATTTTAATTT+TGG + chr2_1:28828415-28828434 Msa0204020:intron 15.0%
!!! ATTTTAACTCAAAAAACTAA+AGG - chr2_1:28828570-28828589 None:intergenic 15.0%
!!! ATACTATTAGTTTTCTTATT+TGG + chr2_1:28831444-28831463 Msa0204020:intron 15.0%
!!! AAAAACTTTGCAAAAATTTT+TGG + chr2_1:28828044-28828063 Msa0204020:five_prime_UTR 15.0%
!!! ATAAAAAAAACATGCTTTTT+TGG - chr2_1:28828284-28828303 None:intergenic 15.0%
!! AATTGGAAACAAAAAAAAAA+GGG - chr2_1:28828364-28828383 None:intergenic 15.0%
!! AAATTGGAAACAAAAAAAAA+AGG - chr2_1:28828365-28828384 None:intergenic 15.0%
!!! TAACTTGGTTATTTTAATTT+TGG + chr2_1:28828415-28828434 Msa0204020:intron 15.0%
!!! ATTTTAACTCAAAAAACTAA+AGG - chr2_1:28828570-28828589 None:intergenic 15.0%
!!! ATACTATTAGTTTTCTTATT+TGG + chr2_1:28831444-28831463 Msa0204020:intron 15.0%
!! CATTACAATATTCCAAAAAA+AGG + chr2_1:28827987-28828006 Msa0204020:five_prime_UTR 20.0%
!! ATCAAAACAGAAACAAAAAT+TGG - chr2_1:28828381-28828400 None:intergenic 20.0%
!! ATACAAATTGATACCATTTA+AGG - chr2_1:28828522-28828541 None:intergenic 20.0%
!!! ACTATGAAAAACGAAATTTT+CGG + chr2_1:28828650-28828669 Msa0204020:intron 20.0%
!! TTCTATTATGCAATGAATTA+GGG - chr2_1:28828931-28828950 None:intergenic 20.0%
!! TAATTCATTGCATAATAGAA+CGG + chr2_1:28828931-28828950 Msa0204020:intron 20.0%
!! ATATGAAAATCGAAAAGATT+AGG - chr2_1:28829304-28829323 None:intergenic 20.0%
!!! CATAATTTTACTTTTCTGAT+CGG + chr2_1:28829864-28829883 Msa0204020:intron 20.0%
!!! TAGCTAAGAGTTTAAAATAA+AGG - chr2_1:28830153-28830172 None:intergenic 20.0%
!! TAGTTGAAGACATAATTAAT+AGG - chr2_1:28831234-28831253 None:intergenic 20.0%
!! ATAATTTATGTTTGCATTAC+AGG + chr2_1:28831467-28831486 Msa0204020:intron 20.0%
!! TTATCATTTATGTGTTCTTT+CGG + chr2_1:28831656-28831675 Msa0204020:three_prime_UTR 20.0%
!! TTTATGTAAGAATGAAAAAC+AGG - chr2_1:28831953-28831972 None:intergenic 20.0%
!! CATTACAATATTCCAAAAAA+AGG + chr2_1:28827987-28828006 Msa0204020:five_prime_UTR 20.0%
!! ATCAAAACAGAAACAAAAAT+TGG - chr2_1:28828381-28828400 None:intergenic 20.0%
!! ATACAAATTGATACCATTTA+AGG - chr2_1:28828522-28828541 None:intergenic 20.0%
!!! ACTATGAAAAACGAAATTTT+CGG + chr2_1:28828650-28828669 Msa0204020:intron 20.0%
!! TTCTATTATGCAATGAATTA+GGG - chr2_1:28828931-28828950 None:intergenic 20.0%
!! TAATTCATTGCATAATAGAA+CGG + chr2_1:28828931-28828950 Msa0204020:intron 20.0%
!! ATATGAAAATCGAAAAGATT+AGG - chr2_1:28829304-28829323 None:intergenic 20.0%
!!! CATAATTTTACTTTTCTGAT+CGG + chr2_1:28829864-28829883 Msa0204020:intron 20.0%
!!! TAGCTAAGAGTTTAAAATAA+AGG - chr2_1:28830153-28830172 None:intergenic 20.0%
!! TAGTTGAAGACATAATTAAT+AGG - chr2_1:28831234-28831253 None:intergenic 20.0%
!! ATAATTTATGTTTGCATTAC+AGG + chr2_1:28831467-28831486 Msa0204020:intron 20.0%
!! TTATCATTTATGTGTTCTTT+CGG + chr2_1:28831656-28831675 Msa0204020:three_prime_UTR 20.0%
!! TTTATGTAAGAATGAAAAAC+AGG - chr2_1:28831953-28831972 None:intergenic 20.0%
!!! CAAAGTTTTTTGAGTTTCAA+TGG - chr2_1:28828034-28828053 None:intergenic 25.0%
! GAAAGAAGAGAATTGTTAAA+GGG - chr2_1:28828081-28828100 None:intergenic 25.0%
! TGAAAGAAGAGAATTGTTAA+AGG - chr2_1:28828082-28828101 None:intergenic 25.0%
!!! AGTTTTGTTGATCTATTTGT+AGG + chr2_1:28828101-28828120 Msa0204020:five_prime_UTR 25.0%
!!! GTTTTGTTGATCTATTTGTA+GGG + chr2_1:28828102-28828121 Msa0204020:five_prime_UTR 25.0%
!! TCCAATTTTTGTACCTTAAA+TGG + chr2_1:28828506-28828525 Msa0204020:intron 25.0%
!! ACCATTTAAGGTACAAAAAT+TGG - chr2_1:28828510-28828529 None:intergenic 25.0%
!!! TTTCGTTTTTCATAGTCAAA+TGG - chr2_1:28828646-28828665 None:intergenic 25.0%
! TTATGAGAAACCATTAAACA+AGG - chr2_1:28828696-28828715 None:intergenic 25.0%
! GTTCTATTATGCAATGAATT+AGG - chr2_1:28828932-28828951 None:intergenic 25.0%
! AAGAACTCAACGATTAATTA+TGG - chr2_1:28829005-28829024 None:intergenic 25.0%
! TGTTCTTATCTTAGTAGTTA+AGG + chr2_1:28829100-28829119 Msa0204020:intron 25.0%
! TTAGTAGTTAAGGATTGTTA+AGG + chr2_1:28829110-28829129 Msa0204020:intron 25.0%
! TAGTAGTTAAGGATTGTTAA+GGG + chr2_1:28829111-28829130 Msa0204020:intron 25.0%
! ATTGTTAAGGGATAGAATAA+AGG + chr2_1:28829123-28829142 Msa0204020:intron 25.0%
! TTGTTAAGGGATAGAATAAA+GGG + chr2_1:28829124-28829143 Msa0204020:intron 25.0%
!! TTTCTTTTCAATTCAACTCT+TGG + chr2_1:28829334-28829353 Msa0204020:intron 25.0%
!!! TGTCTTCATTGATTTAGAAA+AGG - chr2_1:28829380-28829399 None:intergenic 25.0%
!! TAATTTGACTTATGACAGAA+AGG - chr2_1:28829471-28829490 None:intergenic 25.0%
! AAAAGTCCATCATATAAACA+TGG - chr2_1:28829589-28829608 None:intergenic 25.0%
!!! ATGTTTATATGATGGACTTT+TGG + chr2_1:28829588-28829607 Msa0204020:intron 25.0%
!!! CACTGGATATTTTGTTTTTT+TGG + chr2_1:28829646-28829665 Msa0204020:intron 25.0%
! ATTTCATTCAAAACAGAACA+GGG - chr2_1:28829796-28829815 None:intergenic 25.0%
!!! TCTGTTTTGAATGAAATCAT+TGG + chr2_1:28829799-28829818 Msa0204020:intron 25.0%
! TCAGAAAAGTAAAATTATGC+TGG - chr2_1:28829863-28829882 None:intergenic 25.0%
! AATGGAATAAGTAATTACAG+TGG - chr2_1:28829980-28829999 None:intergenic 25.0%
! CTGAAAATTCATGCATATTT+CGG + chr2_1:28830026-28830045 Msa0204020:intron 25.0%
!! ACTAGATATCGTTTCATTTT+AGG - chr2_1:28830195-28830214 None:intergenic 25.0%
! TTAGTTTATGTTTATGCGTT+TGG + chr2_1:28830280-28830299 Msa0204020:intron 25.0%
!! TTGACTTAATTCCACTATTT+TGG + chr2_1:28830426-28830445 Msa0204020:intron 25.0%
! TTCAAAACATACCAAAATAG+TGG - chr2_1:28830440-28830459 None:intergenic 25.0%
!!! ACTATTTTGGTATGTTTTGA+AGG + chr2_1:28830439-28830458 Msa0204020:intron 25.0%
!!! CTATTTTGGTATGTTTTGAA+GGG + chr2_1:28830440-28830459 Msa0204020:intron 25.0%
! TATATGTATCAGTGGTTAAT+TGG - chr2_1:28830466-28830485 None:intergenic 25.0%
!! AACCACTGATACATATATTT+TGG + chr2_1:28830469-28830488 Msa0204020:intron 25.0%
! AACCAAAATATATGTATCAG+TGG - chr2_1:28830474-28830493 None:intergenic 25.0%
! GCAAATATACGAAATATATG+AGG + chr2_1:28830614-28830633 Msa0204020:intron 25.0%
!! CATACACAAAATTTGAAACA+TGG - chr2_1:28831416-28831435 None:intergenic 25.0%
! TTACATAAACAGTGATTCAT+AGG + chr2_1:28831964-28831983 Msa0204020:three_prime_UTR 25.0%
!!! CAAAGTTTTTTGAGTTTCAA+TGG - chr2_1:28828034-28828053 None:intergenic 25.0%
! GAAAGAAGAGAATTGTTAAA+GGG - chr2_1:28828081-28828100 None:intergenic 25.0%
! TGAAAGAAGAGAATTGTTAA+AGG - chr2_1:28828082-28828101 None:intergenic 25.0%
!!! AGTTTTGTTGATCTATTTGT+AGG + chr2_1:28828101-28828120 Msa0204020:five_prime_UTR 25.0%
!!! GTTTTGTTGATCTATTTGTA+GGG + chr2_1:28828102-28828121 Msa0204020:five_prime_UTR 25.0%
!! TCCAATTTTTGTACCTTAAA+TGG + chr2_1:28828506-28828525 Msa0204020:intron 25.0%
!! ACCATTTAAGGTACAAAAAT+TGG - chr2_1:28828510-28828529 None:intergenic 25.0%
!!! TTTCGTTTTTCATAGTCAAA+TGG - chr2_1:28828646-28828665 None:intergenic 25.0%
! TTATGAGAAACCATTAAACA+AGG - chr2_1:28828696-28828715 None:intergenic 25.0%
! GTTCTATTATGCAATGAATT+AGG - chr2_1:28828932-28828951 None:intergenic 25.0%
! AAGAACTCAACGATTAATTA+TGG - chr2_1:28829005-28829024 None:intergenic 25.0%
! TGTTCTTATCTTAGTAGTTA+AGG + chr2_1:28829100-28829119 Msa0204020:intron 25.0%
! TTAGTAGTTAAGGATTGTTA+AGG + chr2_1:28829110-28829129 Msa0204020:intron 25.0%
! TAGTAGTTAAGGATTGTTAA+GGG + chr2_1:28829111-28829130 Msa0204020:intron 25.0%
! ATTGTTAAGGGATAGAATAA+AGG + chr2_1:28829123-28829142 Msa0204020:intron 25.0%
! TTGTTAAGGGATAGAATAAA+GGG + chr2_1:28829124-28829143 Msa0204020:intron 25.0%
!! TTTCTTTTCAATTCAACTCT+TGG + chr2_1:28829334-28829353 Msa0204020:intron 25.0%
!!! TGTCTTCATTGATTTAGAAA+AGG - chr2_1:28829380-28829399 None:intergenic 25.0%
!! TAATTTGACTTATGACAGAA+AGG - chr2_1:28829471-28829490 None:intergenic 25.0%
! AAAAGTCCATCATATAAACA+TGG - chr2_1:28829589-28829608 None:intergenic 25.0%
!!! ATGTTTATATGATGGACTTT+TGG + chr2_1:28829588-28829607 Msa0204020:intron 25.0%
!!! CACTGGATATTTTGTTTTTT+TGG + chr2_1:28829646-28829665 Msa0204020:intron 25.0%
! ATTTCATTCAAAACAGAACA+GGG - chr2_1:28829796-28829815 None:intergenic 25.0%
!!! TCTGTTTTGAATGAAATCAT+TGG + chr2_1:28829799-28829818 Msa0204020:intron 25.0%
! TCAGAAAAGTAAAATTATGC+TGG - chr2_1:28829863-28829882 None:intergenic 25.0%
! AATGGAATAAGTAATTACAG+TGG - chr2_1:28829980-28829999 None:intergenic 25.0%
! CTGAAAATTCATGCATATTT+CGG + chr2_1:28830026-28830045 Msa0204020:intron 25.0%
!! ACTAGATATCGTTTCATTTT+AGG - chr2_1:28830195-28830214 None:intergenic 25.0%
! TTAGTTTATGTTTATGCGTT+TGG + chr2_1:28830280-28830299 Msa0204020:intron 25.0%
!! TTGACTTAATTCCACTATTT+TGG + chr2_1:28830426-28830445 Msa0204020:intron 25.0%
! TTCAAAACATACCAAAATAG+TGG - chr2_1:28830440-28830459 None:intergenic 25.0%
!!! ACTATTTTGGTATGTTTTGA+AGG + chr2_1:28830439-28830458 Msa0204020:intron 25.0%
!!! CTATTTTGGTATGTTTTGAA+GGG + chr2_1:28830440-28830459 Msa0204020:intron 25.0%
! TATATGTATCAGTGGTTAAT+TGG - chr2_1:28830466-28830485 None:intergenic 25.0%
!! AACCACTGATACATATATTT+TGG + chr2_1:28830469-28830488 Msa0204020:intron 25.0%
! AACCAAAATATATGTATCAG+TGG - chr2_1:28830474-28830493 None:intergenic 25.0%
! GCAAATATACGAAATATATG+AGG + chr2_1:28830614-28830633 Msa0204020:intron 25.0%
!! CATACACAAAATTTGAAACA+TGG - chr2_1:28831416-28831435 None:intergenic 25.0%
! TTACATAAACAGTGATTCAT+AGG + chr2_1:28831964-28831983 Msa0204020:three_prime_UTR 25.0%
!!! GCTGTTTTGATTCCTTTTTT+TGG - chr2_1:28828002-28828021 None:intergenic 30.0%
TTGTAGGGTTCTTCAAAAAA+TGG + chr2_1:28828117-28828136 Msa0204020:exon 30.0%
CAAAAAAAAAAGGGTCTTGA+AGG - chr2_1:28828355-28828374 None:intergenic 30.0%
TGAATGATTACTCACTAACT+TGG + chr2_1:28828400-28828419 Msa0204020:intron 30.0%
TGTAGATGAACAATGAACTA+AGG + chr2_1:28828474-28828493 Msa0204020:intron 30.0%
AAAATTGTTCTGATGAGTTG+AGG + chr2_1:28828585-28828604 Msa0204020:intron 30.0%
! AAATTGTTCTGATGAGTTGA+GGG + chr2_1:28828586-28828605 Msa0204020:intron 30.0%
CGGTTAAATTGTTTATCCTA+TGG + chr2_1:28828670-28828689 Msa0204020:intron 30.0%
! ACAAACAGTTGATGTTTGTA+TGG + chr2_1:28828798-28828817 Msa0204020:intron 30.0%
GAAAGGTTACAATAGAAATC+TGG - chr2_1:28829051-28829070 None:intergenic 30.0%
! TCTCAAATTACTCTTTTCGT+AGG + chr2_1:28829527-28829546 Msa0204020:intron 30.0%
CGGTCTATGTAAGATATAAT+AGG - chr2_1:28829561-28829580 None:intergenic 30.0%
! ATCATATAAACATGGTGTTG+CGG - chr2_1:28829581-28829600 None:intergenic 30.0%
! TGATTGAAGAACAAAAGCAT+AGG + chr2_1:28829700-28829719 Msa0204020:intron 30.0%
GATTTCATTCAAAACAGAAC+AGG - chr2_1:28829797-28829816 None:intergenic 30.0%
!!! AGATGTATCACTGTTTTTGA+TGG + chr2_1:28829837-28829856 Msa0204020:intron 30.0%
GTGAATTTCATCAACTTATG+CGG - chr2_1:28829915-28829934 None:intergenic 30.0%
TCTTGCTGAAACATATGTAA+TGG - chr2_1:28829998-28830017 None:intergenic 30.0%
ACATATGTTTCAGCAAGAAT+AGG + chr2_1:28830000-28830019 Msa0204020:intron 30.0%
ACACAAAAACTGTTAAGTCA+AGG + chr2_1:28830109-28830128 Msa0204020:intron 30.0%
GCAAAATCATTGTATAACAG+TGG - chr2_1:28830363-28830382 None:intergenic 30.0%
! CTGTTATACAATGATTTTGC+TGG + chr2_1:28830363-28830382 Msa0204020:intron 30.0%
!! GCTTTCTAGAATAGAGTTTA+TGG - chr2_1:28830650-28830669 None:intergenic 30.0%
ATTGGTGGAAATTGTAACTT+TGG - chr2_1:28830672-28830691 None:intergenic 30.0%
TTACAATTTCCACCAATATC+AGG + chr2_1:28830675-28830694 Msa0204020:intron 30.0%
CTACTTTAGTCATCAAAAAC+TGG + chr2_1:28830774-28830793 Msa0204020:intron 30.0%
AGCTTACCATCTTCTATAAT+GGG + chr2_1:28830868-28830887 Msa0204020:CDS 30.0%
AATACTCCCATTATAGAAGA+TGG - chr2_1:28830877-28830896 None:intergenic 30.0%
TTGACTCTCTATTTACTAAC+AGG + chr2_1:28831005-28831024 Msa0204020:intron 30.0%
ATAGAATTCTTTGCAGGAAA+GGG - chr2_1:28831186-28831205 None:intergenic 30.0%
ACGAGACATATAAATTATGG+TGG - chr2_1:28831294-28831313 None:intergenic 30.0%
CACACGAGACATATAAATTA+TGG - chr2_1:28831297-28831316 None:intergenic 30.0%
CATAATTTATATGTCTCGTG+TGG + chr2_1:28831295-28831314 Msa0204020:intron 30.0%
TTTATGTTTGCATTACAGGT+TGG + chr2_1:28831471-28831490 Msa0204020:intron 30.0%
TTATGTTTGCATTACAGGTT+GGG + chr2_1:28831472-28831491 Msa0204020:intron 30.0%
ATTTATGTGTTCTTTCGGTA+AGG + chr2_1:28831661-28831680 Msa0204020:three_prime_UTR 30.0%
TTTATGTGTTCTTTCGGTAA+GGG + chr2_1:28831662-28831681 Msa0204020:three_prime_UTR 30.0%
ATTATCGAACATCAACACAT+TGG - chr2_1:28831898-28831917 None:intergenic 30.0%
TGTAAGAATGAAAAACAGGA+AGG - chr2_1:28831949-28831968 None:intergenic 30.0%
!!! GCTGTTTTGATTCCTTTTTT+TGG - chr2_1:28828002-28828021 None:intergenic 30.0%
TTGTAGGGTTCTTCAAAAAA+TGG + chr2_1:28828117-28828136 Msa0204020:exon 30.0%
CAAAAAAAAAAGGGTCTTGA+AGG - chr2_1:28828355-28828374 None:intergenic 30.0%
TGAATGATTACTCACTAACT+TGG + chr2_1:28828400-28828419 Msa0204020:intron 30.0%
TGTAGATGAACAATGAACTA+AGG + chr2_1:28828474-28828493 Msa0204020:intron 30.0%
AAAATTGTTCTGATGAGTTG+AGG + chr2_1:28828585-28828604 Msa0204020:intron 30.0%
! AAATTGTTCTGATGAGTTGA+GGG + chr2_1:28828586-28828605 Msa0204020:intron 30.0%
CGGTTAAATTGTTTATCCTA+TGG + chr2_1:28828670-28828689 Msa0204020:intron 30.0%
! ACAAACAGTTGATGTTTGTA+TGG + chr2_1:28828798-28828817 Msa0204020:intron 30.0%
GAAAGGTTACAATAGAAATC+TGG - chr2_1:28829051-28829070 None:intergenic 30.0%
! TCTCAAATTACTCTTTTCGT+AGG + chr2_1:28829527-28829546 Msa0204020:intron 30.0%
CGGTCTATGTAAGATATAAT+AGG - chr2_1:28829561-28829580 None:intergenic 30.0%
! ATCATATAAACATGGTGTTG+CGG - chr2_1:28829581-28829600 None:intergenic 30.0%
! TGATTGAAGAACAAAAGCAT+AGG + chr2_1:28829700-28829719 Msa0204020:intron 30.0%
GATTTCATTCAAAACAGAAC+AGG - chr2_1:28829797-28829816 None:intergenic 30.0%
!!! AGATGTATCACTGTTTTTGA+TGG + chr2_1:28829837-28829856 Msa0204020:intron 30.0%
GTGAATTTCATCAACTTATG+CGG - chr2_1:28829915-28829934 None:intergenic 30.0%
TCTTGCTGAAACATATGTAA+TGG - chr2_1:28829998-28830017 None:intergenic 30.0%
ACATATGTTTCAGCAAGAAT+AGG + chr2_1:28830000-28830019 Msa0204020:intron 30.0%
ACACAAAAACTGTTAAGTCA+AGG + chr2_1:28830109-28830128 Msa0204020:intron 30.0%
GCAAAATCATTGTATAACAG+TGG - chr2_1:28830363-28830382 None:intergenic 30.0%
! CTGTTATACAATGATTTTGC+TGG + chr2_1:28830363-28830382 Msa0204020:intron 30.0%
!! GCTTTCTAGAATAGAGTTTA+TGG - chr2_1:28830650-28830669 None:intergenic 30.0%
ATTGGTGGAAATTGTAACTT+TGG - chr2_1:28830672-28830691 None:intergenic 30.0%
TTACAATTTCCACCAATATC+AGG + chr2_1:28830675-28830694 Msa0204020:intron 30.0%
CTACTTTAGTCATCAAAAAC+TGG + chr2_1:28830774-28830793 Msa0204020:intron 30.0%
AGCTTACCATCTTCTATAAT+GGG + chr2_1:28830868-28830887 Msa0204020:CDS 30.0%
AATACTCCCATTATAGAAGA+TGG - chr2_1:28830877-28830896 None:intergenic 30.0%
TTGACTCTCTATTTACTAAC+AGG + chr2_1:28831005-28831024 Msa0204020:intron 30.0%
ATAGAATTCTTTGCAGGAAA+GGG - chr2_1:28831186-28831205 None:intergenic 30.0%
ACGAGACATATAAATTATGG+TGG - chr2_1:28831294-28831313 None:intergenic 30.0%
CACACGAGACATATAAATTA+TGG - chr2_1:28831297-28831316 None:intergenic 30.0%
CATAATTTATATGTCTCGTG+TGG + chr2_1:28831295-28831314 Msa0204020:intron 30.0%
TTTATGTTTGCATTACAGGT+TGG + chr2_1:28831471-28831490 Msa0204020:intron 30.0%
TTATGTTTGCATTACAGGTT+GGG + chr2_1:28831472-28831491 Msa0204020:intron 30.0%
ATTTATGTGTTCTTTCGGTA+AGG + chr2_1:28831661-28831680 Msa0204020:three_prime_UTR 30.0%
TTTATGTGTTCTTTCGGTAA+GGG + chr2_1:28831662-28831681 Msa0204020:three_prime_UTR 30.0%
ATTATCGAACATCAACACAT+TGG - chr2_1:28831898-28831917 None:intergenic 30.0%
TGTAAGAATGAAAAACAGGA+AGG - chr2_1:28831949-28831968 None:intergenic 30.0%
! CACATGTTGCTTAAAGTAAC+CGG + chr2_1:28827947-28827966 Msa0204020:five_prime_UTR 35.0%
AAAGTAACCGGCAATGATTA+TGG + chr2_1:28827959-28827978 Msa0204020:five_prime_UTR 35.0%
AGGGTTCTTCAAAAAATGGA+TGG + chr2_1:28828121-28828140 Msa0204020:exon 35.0%
!! AATGGATGGTGTTACTGTTA+AGG + chr2_1:28828135-28828154 Msa0204020:exon 35.0%
! TCTAGAACAGTAAACTTCTC+TGG - chr2_1:28828166-28828185 None:intergenic 35.0%
!! TATCCTATGGCCTTGTTTAA+TGG + chr2_1:28828683-28828702 Msa0204020:intron 35.0%
AAACCATTAAACAAGGCCAT+AGG - chr2_1:28828689-28828708 None:intergenic 35.0%
! CAAACATCAACTGTTTGTTG+AGG - chr2_1:28828796-28828815 None:intergenic 35.0%
TGTTGAGTTTGTGTTGAGTA+TGG + chr2_1:28828831-28828850 Msa0204020:intron 35.0%
TAATAGAACGGTACAACAAC+CGG + chr2_1:28828943-28828962 Msa0204020:intron 35.0%
CAACGATTAATTATGGAGCT+CGG - chr2_1:28828998-28829017 None:intergenic 35.0%
CATCTGATTGTACAGTAGAA+AGG - chr2_1:28829068-28829087 None:intergenic 35.0%
ATTAGGAGTCTCTTCTTCAA+GGG - chr2_1:28829287-28829306 None:intergenic 35.0%
AAAAGGCTTGTGACAATGTT+AGG - chr2_1:28829363-28829382 None:intergenic 35.0%
TACATCTTCTCATTGAACCT+TGG + chr2_1:28829425-28829444 Msa0204020:intron 35.0%
! GTAAGATATAATAGGCGTTG+TGG - chr2_1:28829553-28829572 None:intergenic 35.0%
GCAACACCATGTTTATATGA+TGG + chr2_1:28829580-28829599 Msa0204020:intron 35.0%
! ACAAAAGCATAGGAAACCAT+TGG + chr2_1:28829710-28829729 Msa0204020:intron 35.0%
! CAAAAGCATAGGAAACCATT+GGG + chr2_1:28829711-28829730 Msa0204020:intron 35.0%
GTAGATTTATTCGATTGCAG+AGG - chr2_1:28829743-28829762 None:intergenic 35.0%
TATGTTTCAGCAAGAATAGG+AGG + chr2_1:28830003-28830022 Msa0204020:intron 35.0%
AAAGGTTCATGATTGTGATG+CGG - chr2_1:28830135-28830154 None:intergenic 35.0%
AAATGTGATTAACCAGCGAA+TGG - chr2_1:28830241-28830260 None:intergenic 35.0%
TGGAAAGCTCATAGAAAATG+TGG - chr2_1:28830343-28830362 None:intergenic 35.0%
ATAGATAAGCCTGATATTGG+TGG - chr2_1:28830687-28830706 None:intergenic 35.0%
AGCATAGATAAGCCTGATAT+TGG - chr2_1:28830690-28830709 None:intergenic 35.0%
! GCTTTGTAACTTCCTCTTTT+AGG + chr2_1:28830799-28830818 Msa0204020:intron 35.0%
TGAGTTGTATTAGCAATCAC+TGG - chr2_1:28830849-28830868 None:intergenic 35.0%
CAGCTTACCATCTTCTATAA+TGG + chr2_1:28830867-28830886 Msa0204020:CDS 35.0%
!! GGGAGTATTTGTATCTATGA+TGG + chr2_1:28830888-28830907 Msa0204020:CDS 35.0%
AATCATCTCAGTGTAGTGTA+GGG - chr2_1:28830934-28830953 None:intergenic 35.0%
TAATCATCTCAGTGTAGTGT+AGG - chr2_1:28830935-28830954 None:intergenic 35.0%
ATATTATCAGCAGTTCCATG+TGG - chr2_1:28831144-28831163 None:intergenic 35.0%
GATAGAATTCTTTGCAGGAA+AGG - chr2_1:28831187-28831206 None:intergenic 35.0%
! CACAAAATTTGAAACATGGC+AGG - chr2_1:28831412-28831431 None:intergenic 35.0%
!!! TTGTCAGCTACCTTTGTTTT+TGG - chr2_1:28831523-28831542 None:intergenic 35.0%
TTGAGCAGAATTCTAGTGTT+TGG + chr2_1:28831633-28831652 Msa0204020:exon 35.0%
GTTAAGCCTGATGTTGTTAT+TGG + chr2_1:28831986-28832005 Msa0204020:three_prime_UTR 35.0%
! TTGTTATTGGATCCCAAGAA+TGG + chr2_1:28831999-28832018 Msa0204020:three_prime_UTR 35.0%
! CACATGTTGCTTAAAGTAAC+CGG + chr2_1:28827947-28827966 Msa0204020:five_prime_UTR 35.0%
AAAGTAACCGGCAATGATTA+TGG + chr2_1:28827959-28827978 Msa0204020:five_prime_UTR 35.0%
AGGGTTCTTCAAAAAATGGA+TGG + chr2_1:28828121-28828140 Msa0204020:exon 35.0%
!! AATGGATGGTGTTACTGTTA+AGG + chr2_1:28828135-28828154 Msa0204020:exon 35.0%
! TCTAGAACAGTAAACTTCTC+TGG - chr2_1:28828166-28828185 None:intergenic 35.0%
!! TATCCTATGGCCTTGTTTAA+TGG + chr2_1:28828683-28828702 Msa0204020:intron 35.0%
AAACCATTAAACAAGGCCAT+AGG - chr2_1:28828689-28828708 None:intergenic 35.0%
! CAAACATCAACTGTTTGTTG+AGG - chr2_1:28828796-28828815 None:intergenic 35.0%
TGTTGAGTTTGTGTTGAGTA+TGG + chr2_1:28828831-28828850 Msa0204020:intron 35.0%
TAATAGAACGGTACAACAAC+CGG + chr2_1:28828943-28828962 Msa0204020:intron 35.0%
CAACGATTAATTATGGAGCT+CGG - chr2_1:28828998-28829017 None:intergenic 35.0%
CATCTGATTGTACAGTAGAA+AGG - chr2_1:28829068-28829087 None:intergenic 35.0%
ATTAGGAGTCTCTTCTTCAA+GGG - chr2_1:28829287-28829306 None:intergenic 35.0%
AAAAGGCTTGTGACAATGTT+AGG - chr2_1:28829363-28829382 None:intergenic 35.0%
TACATCTTCTCATTGAACCT+TGG + chr2_1:28829425-28829444 Msa0204020:intron 35.0%
! GTAAGATATAATAGGCGTTG+TGG - chr2_1:28829553-28829572 None:intergenic 35.0%
GCAACACCATGTTTATATGA+TGG + chr2_1:28829580-28829599 Msa0204020:intron 35.0%
! ACAAAAGCATAGGAAACCAT+TGG + chr2_1:28829710-28829729 Msa0204020:intron 35.0%
! CAAAAGCATAGGAAACCATT+GGG + chr2_1:28829711-28829730 Msa0204020:intron 35.0%
GTAGATTTATTCGATTGCAG+AGG - chr2_1:28829743-28829762 None:intergenic 35.0%
TATGTTTCAGCAAGAATAGG+AGG + chr2_1:28830003-28830022 Msa0204020:intron 35.0%
AAAGGTTCATGATTGTGATG+CGG - chr2_1:28830135-28830154 None:intergenic 35.0%
AAATGTGATTAACCAGCGAA+TGG - chr2_1:28830241-28830260 None:intergenic 35.0%
TGGAAAGCTCATAGAAAATG+TGG - chr2_1:28830343-28830362 None:intergenic 35.0%
ATAGATAAGCCTGATATTGG+TGG - chr2_1:28830687-28830706 None:intergenic 35.0%
AGCATAGATAAGCCTGATAT+TGG - chr2_1:28830690-28830709 None:intergenic 35.0%
! GCTTTGTAACTTCCTCTTTT+AGG + chr2_1:28830799-28830818 Msa0204020:intron 35.0%
TGAGTTGTATTAGCAATCAC+TGG - chr2_1:28830849-28830868 None:intergenic 35.0%
CAGCTTACCATCTTCTATAA+TGG + chr2_1:28830867-28830886 Msa0204020:CDS 35.0%
!! GGGAGTATTTGTATCTATGA+TGG + chr2_1:28830888-28830907 Msa0204020:CDS 35.0%
AATCATCTCAGTGTAGTGTA+GGG - chr2_1:28830934-28830953 None:intergenic 35.0%
TAATCATCTCAGTGTAGTGT+AGG - chr2_1:28830935-28830954 None:intergenic 35.0%
ATATTATCAGCAGTTCCATG+TGG - chr2_1:28831144-28831163 None:intergenic 35.0%
GATAGAATTCTTTGCAGGAA+AGG - chr2_1:28831187-28831206 None:intergenic 35.0%
! CACAAAATTTGAAACATGGC+AGG - chr2_1:28831412-28831431 None:intergenic 35.0%
!!! TTGTCAGCTACCTTTGTTTT+TGG - chr2_1:28831523-28831542 None:intergenic 35.0%
TTGAGCAGAATTCTAGTGTT+TGG + chr2_1:28831633-28831652 Msa0204020:exon 35.0%
GTTAAGCCTGATGTTGTTAT+TGG + chr2_1:28831986-28832005 Msa0204020:three_prime_UTR 35.0%
! TTGTTATTGGATCCCAAGAA+TGG + chr2_1:28831999-28832018 Msa0204020:three_prime_UTR 35.0%
TAACCGGCAATGATTATGGT+TGG + chr2_1:28827963-28827982 Msa0204020:five_prime_UTR 40.0%
TGACCAACCATAATCATTGC+CGG - chr2_1:28827969-28827988 None:intergenic 40.0%
! TCTTCTCCTATTGCTGTTGA+TGG + chr2_1:28828187-28828206 Msa0204020:CDS 40.0%
! GTTTGTTGAGGAGAAAAGCA+GGG - chr2_1:28828784-28828803 None:intergenic 40.0%
! TGTTTGTTGAGGAGAAAAGC+AGG - chr2_1:28828785-28828804 None:intergenic 40.0%
AAATACTACGAGCCACTCAT+CGG - chr2_1:28828867-28828886 None:intergenic 40.0%
GTACATCTCTAACAGTTGAC+CGG - chr2_1:28828965-28828984 None:intergenic 40.0%
GTTAGAGATGTACACGCAAT+TGG + chr2_1:28828972-28828991 Msa0204020:intron 40.0%
AGAGTAGTTAGTTAGCCGTT+TGG + chr2_1:28829179-28829198 Msa0204020:intron 40.0%
TAGTTAGTTAGCCGTTTGGT+TGG + chr2_1:28829183-28829202 Msa0204020:intron 40.0%
AGTTAGTTAGCCGTTTGGTT+GGG + chr2_1:28829184-28829203 Msa0204020:intron 40.0%
GTATTCTCTACCCAACCAAA+CGG - chr2_1:28829197-28829216 None:intergenic 40.0%
GATTAGGAGTCTCTTCTTCA+AGG - chr2_1:28829288-28829307 None:intergenic 40.0%
ACCTTGGTATGTATCCTTCA+TGG + chr2_1:28829441-28829460 Msa0204020:intron 40.0%
ACCATGAAGGATACATACCA+AGG - chr2_1:28829445-28829464 None:intergenic 40.0%
TATCTGCTGATGGCAGATTA+TGG - chr2_1:28829621-28829640 None:intergenic 40.0%
CAGTGTTATCTATCTGCTGA+TGG - chr2_1:28829631-28829650 None:intergenic 40.0%
CATCAGCAGATAGATAACAC+TGG + chr2_1:28829629-28829648 Msa0204020:intron 40.0%
ATCTACTGAAGACGTGTTTC+AGG + chr2_1:28829757-28829776 Msa0204020:intron 40.0%
ACGTGTAACCAAATCGAACA+CGG + chr2_1:28829933-28829952 Msa0204020:intron 40.0%
! ACTTTTGTCCGTGTTCGATT+TGG - chr2_1:28829944-28829963 None:intergenic 40.0%
GCAGTCAAATACTGTTGATG+TGG + chr2_1:28830055-28830074 Msa0204020:intron 40.0%
! TGTTGATGTGGCCTTAATCA+TGG + chr2_1:28830067-28830086 Msa0204020:intron 40.0%
! CTCCATGTACTGAGTTTTCA+AGG + chr2_1:28830517-28830536 Msa0204020:intron 40.0%
AGCCTTGAAAACTCAGTACA+TGG - chr2_1:28830522-28830541 None:intergenic 40.0%
TGCTTCTGTGTTTGTTTGAG+TGG + chr2_1:28830706-28830725 Msa0204020:intron 40.0%
TGATGGAATTCCTGCAGAAA+AGG + chr2_1:28830905-28830924 Msa0204020:CDS 40.0%
!!! ATTTTGATTGTGTCGCAGCA+TGG - chr2_1:28830980-28830999 None:intergenic 40.0%
CTTCTTCGTTTCACTAGACT+TGG - chr2_1:28831064-28831083 None:intergenic 40.0%
TGATAATATCGCTTCACCAC+AGG + chr2_1:28831155-28831174 Msa0204020:CDS 40.0%
CTGCAGATAGAATTCTTTGC+AGG - chr2_1:28831192-28831211 None:intergenic 40.0%
CTGCAAAGAATTCTATCTGC+AGG + chr2_1:28831190-28831209 Msa0204020:CDS 40.0%
AACAAAGGTAGCTGACAACA+TGG + chr2_1:28831525-28831544 Msa0204020:CDS 40.0%
GACAACATGGAGAACAACTT+CGG + chr2_1:28831538-28831557 Msa0204020:CDS 40.0%
TCCTTCATTGAAACCGAATC+TGG - chr2_1:28831577-28831596 None:intergenic 40.0%
GCTCAAGATGCAGATATAGT+TGG - chr2_1:28831619-28831638 None:intergenic 40.0%
ACTTCAAAGTTGCATCTCTC+TGG + chr2_1:28831785-28831804 Msa0204020:three_prime_UTR 40.0%
TGGGATCCAATAACAACATC+AGG - chr2_1:28831995-28832014 None:intergenic 40.0%
TAACCGGCAATGATTATGGT+TGG + chr2_1:28827963-28827982 Msa0204020:five_prime_UTR 40.0%
TGACCAACCATAATCATTGC+CGG - chr2_1:28827969-28827988 None:intergenic 40.0%
! TCTTCTCCTATTGCTGTTGA+TGG + chr2_1:28828187-28828206 Msa0204020:CDS 40.0%
! GTTTGTTGAGGAGAAAAGCA+GGG - chr2_1:28828784-28828803 None:intergenic 40.0%
! TGTTTGTTGAGGAGAAAAGC+AGG - chr2_1:28828785-28828804 None:intergenic 40.0%
AAATACTACGAGCCACTCAT+CGG - chr2_1:28828867-28828886 None:intergenic 40.0%
GTACATCTCTAACAGTTGAC+CGG - chr2_1:28828965-28828984 None:intergenic 40.0%
GTTAGAGATGTACACGCAAT+TGG + chr2_1:28828972-28828991 Msa0204020:intron 40.0%
AGAGTAGTTAGTTAGCCGTT+TGG + chr2_1:28829179-28829198 Msa0204020:intron 40.0%
TAGTTAGTTAGCCGTTTGGT+TGG + chr2_1:28829183-28829202 Msa0204020:intron 40.0%
AGTTAGTTAGCCGTTTGGTT+GGG + chr2_1:28829184-28829203 Msa0204020:intron 40.0%
GTATTCTCTACCCAACCAAA+CGG - chr2_1:28829197-28829216 None:intergenic 40.0%
GATTAGGAGTCTCTTCTTCA+AGG - chr2_1:28829288-28829307 None:intergenic 40.0%
ACCTTGGTATGTATCCTTCA+TGG + chr2_1:28829441-28829460 Msa0204020:intron 40.0%
ACCATGAAGGATACATACCA+AGG - chr2_1:28829445-28829464 None:intergenic 40.0%
TATCTGCTGATGGCAGATTA+TGG - chr2_1:28829621-28829640 None:intergenic 40.0%
CAGTGTTATCTATCTGCTGA+TGG - chr2_1:28829631-28829650 None:intergenic 40.0%
CATCAGCAGATAGATAACAC+TGG + chr2_1:28829629-28829648 Msa0204020:intron 40.0%
ATCTACTGAAGACGTGTTTC+AGG + chr2_1:28829757-28829776 Msa0204020:intron 40.0%
ACGTGTAACCAAATCGAACA+CGG + chr2_1:28829933-28829952 Msa0204020:intron 40.0%
! ACTTTTGTCCGTGTTCGATT+TGG - chr2_1:28829944-28829963 None:intergenic 40.0%
GCAGTCAAATACTGTTGATG+TGG + chr2_1:28830055-28830074 Msa0204020:intron 40.0%
! TGTTGATGTGGCCTTAATCA+TGG + chr2_1:28830067-28830086 Msa0204020:intron 40.0%
! CTCCATGTACTGAGTTTTCA+AGG + chr2_1:28830517-28830536 Msa0204020:intron 40.0%
AGCCTTGAAAACTCAGTACA+TGG - chr2_1:28830522-28830541 None:intergenic 40.0%
TGCTTCTGTGTTTGTTTGAG+TGG + chr2_1:28830706-28830725 Msa0204020:intron 40.0%
TGATGGAATTCCTGCAGAAA+AGG + chr2_1:28830905-28830924 Msa0204020:CDS 40.0%
!!! ATTTTGATTGTGTCGCAGCA+TGG - chr2_1:28830980-28830999 None:intergenic 40.0%
CTTCTTCGTTTCACTAGACT+TGG - chr2_1:28831064-28831083 None:intergenic 40.0%
TGATAATATCGCTTCACCAC+AGG + chr2_1:28831155-28831174 Msa0204020:CDS 40.0%
CTGCAGATAGAATTCTTTGC+AGG - chr2_1:28831192-28831211 None:intergenic 40.0%
CTGCAAAGAATTCTATCTGC+AGG + chr2_1:28831190-28831209 Msa0204020:CDS 40.0%
AACAAAGGTAGCTGACAACA+TGG + chr2_1:28831525-28831544 Msa0204020:CDS 40.0%
GACAACATGGAGAACAACTT+CGG + chr2_1:28831538-28831557 Msa0204020:CDS 40.0%
TCCTTCATTGAAACCGAATC+TGG - chr2_1:28831577-28831596 None:intergenic 40.0%
GCTCAAGATGCAGATATAGT+TGG - chr2_1:28831619-28831638 None:intergenic 40.0%
ACTTCAAAGTTGCATCTCTC+TGG + chr2_1:28831785-28831804 Msa0204020:three_prime_UTR 40.0%
TGGGATCCAATAACAACATC+AGG - chr2_1:28831995-28832014 None:intergenic 40.0%
CTAGCACCATCAACAGCAAT+AGG - chr2_1:28828196-28828215 None:intergenic 45.0%
GACAGAAAGGTCAACCATGA+AGG - chr2_1:28829458-28829477 None:intergenic 45.0%
TTGCAGAGGTTAGATCCCAA+TGG - chr2_1:28829729-28829748 None:intergenic 45.0%
CCTTAATCATGGTCGTGTTG+CGG + chr2_1:28830078-28830097 Msa0204020:intron 45.0%
GCCTTAGCGACATGAATTCA+AGG + chr2_1:28830215-28830234 Msa0204020:intron 45.0%
GCCTTGAATTCATGTCGCTA+AGG - chr2_1:28830219-28830238 None:intergenic 45.0%
ATGAATTCAAGGCCATTCGC+TGG + chr2_1:28830226-28830245 Msa0204020:intron 45.0%
!! TGCTGGCATTGACCTAAAAG+AGG - chr2_1:28830814-28830833 None:intergenic 45.0%
TTTAGGTCAATGCCAGCATC+TGG + chr2_1:28830816-28830835 Msa0204020:intron 45.0%
ACTGGATTCATTCCAGATGC+TGG - chr2_1:28830831-28830850 None:intergenic 45.0%
TCGCAGCATGGAAAATAGAG+CGG - chr2_1:28830968-28830987 None:intergenic 45.0%
TGAAGGAACAGGTGAAGGAA+CGG - chr2_1:28831109-28831128 None:intergenic 45.0%
TTCCTTCACCTGTTCCTTCA+AGG + chr2_1:28831109-28831128 Msa0204020:CDS 45.0%
AATTCTATCTGCAGGCTGCA+AGG + chr2_1:28831198-28831217 Msa0204020:CDS 45.0%
AGTGAATGTCTGCGTGCTAT+TGG - chr2_1:28831349-28831368 None:intergenic 45.0%
!!! GTTTTTGGCGAGGAAGGATA+GGG - chr2_1:28831508-28831527 None:intergenic 45.0%
!!! TGTTTTTGGCGAGGAAGGAT+AGG - chr2_1:28831509-28831528 None:intergenic 45.0%
TCCTTCCTCGCCAAAAACAA+AGG + chr2_1:28831510-28831529 Msa0204020:CDS 45.0%
!!! ACCTTTGTTTTTGGCGAGGA+AGG - chr2_1:28831514-28831533 None:intergenic 45.0%
!!! AGCTACCTTTGTTTTTGGCG+AGG - chr2_1:28831518-28831537 None:intergenic 45.0%
TGCTGACAATTCGCCAGATT+CGG + chr2_1:28831561-28831580 Msa0204020:CDS 45.0%
! GCCAGATTCGGTTTCAATGA+AGG + chr2_1:28831573-28831592 Msa0204020:CDS 45.0%
CGGTTTCAATGAAGGAACCA+CGG + chr2_1:28831581-28831600 Msa0204020:CDS 45.0%
GGTTTCAATGAAGGAACCAC+GGG + chr2_1:28831582-28831601 Msa0204020:CDS 45.0%
CTAGCACCATCAACAGCAAT+AGG - chr2_1:28828196-28828215 None:intergenic 45.0%
GACAGAAAGGTCAACCATGA+AGG - chr2_1:28829458-28829477 None:intergenic 45.0%
TTGCAGAGGTTAGATCCCAA+TGG - chr2_1:28829729-28829748 None:intergenic 45.0%
CCTTAATCATGGTCGTGTTG+CGG + chr2_1:28830078-28830097 Msa0204020:intron 45.0%
GCCTTAGCGACATGAATTCA+AGG + chr2_1:28830215-28830234 Msa0204020:intron 45.0%
GCCTTGAATTCATGTCGCTA+AGG - chr2_1:28830219-28830238 None:intergenic 45.0%
ATGAATTCAAGGCCATTCGC+TGG + chr2_1:28830226-28830245 Msa0204020:intron 45.0%
!! TGCTGGCATTGACCTAAAAG+AGG - chr2_1:28830814-28830833 None:intergenic 45.0%
TTTAGGTCAATGCCAGCATC+TGG + chr2_1:28830816-28830835 Msa0204020:intron 45.0%
ACTGGATTCATTCCAGATGC+TGG - chr2_1:28830831-28830850 None:intergenic 45.0%
TCGCAGCATGGAAAATAGAG+CGG - chr2_1:28830968-28830987 None:intergenic 45.0%
TGAAGGAACAGGTGAAGGAA+CGG - chr2_1:28831109-28831128 None:intergenic 45.0%
TTCCTTCACCTGTTCCTTCA+AGG + chr2_1:28831109-28831128 Msa0204020:CDS 45.0%
AATTCTATCTGCAGGCTGCA+AGG + chr2_1:28831198-28831217 Msa0204020:CDS 45.0%
AGTGAATGTCTGCGTGCTAT+TGG - chr2_1:28831349-28831368 None:intergenic 45.0%
!!! GTTTTTGGCGAGGAAGGATA+GGG - chr2_1:28831508-28831527 None:intergenic 45.0%
!!! TGTTTTTGGCGAGGAAGGAT+AGG - chr2_1:28831509-28831528 None:intergenic 45.0%
TCCTTCCTCGCCAAAAACAA+AGG + chr2_1:28831510-28831529 Msa0204020:CDS 45.0%
!!! ACCTTTGTTTTTGGCGAGGA+AGG - chr2_1:28831514-28831533 None:intergenic 45.0%
!!! AGCTACCTTTGTTTTTGGCG+AGG - chr2_1:28831518-28831537 None:intergenic 45.0%
TGCTGACAATTCGCCAGATT+CGG + chr2_1:28831561-28831580 Msa0204020:CDS 45.0%
! GCCAGATTCGGTTTCAATGA+AGG + chr2_1:28831573-28831592 Msa0204020:CDS 45.0%
CGGTTTCAATGAAGGAACCA+CGG + chr2_1:28831581-28831600 Msa0204020:CDS 45.0%
GGTTTCAATGAAGGAACCAC+GGG + chr2_1:28831582-28831601 Msa0204020:CDS 45.0%
! TGATGGTGCTAGCTCCAACA+TGG + chr2_1:28828204-28828223 Msa0204020:CDS 50.0%
TGCTAGCTCCAACATGGTTG+AGG + chr2_1:28828210-28828229 Msa0204020:CDS 50.0%
GCTAGCTCCAACATGGTTGA+GGG + chr2_1:28828211-28828230 Msa0204020:CDS 50.0%
CTAGCTCCAACATGGTTGAG+GGG + chr2_1:28828212-28828231 Msa0204020:CDS 50.0%
CATTGACCCCTCAACCATGT+TGG - chr2_1:28828221-28828240 None:intergenic 50.0%
TGTTGAGGAGAAAAGCAGGG+AGG - chr2_1:28828781-28828800 None:intergenic 50.0%
CTGCTGATGGCAGATTATGG+CGG - chr2_1:28829618-28829637 None:intergenic 50.0%
CCGCAACACGACCATGATTA+AGG - chr2_1:28830081-28830100 None:intergenic 50.0%
! TGTAGGGCTACCTTTTCTGC+AGG - chr2_1:28830918-28830937 None:intergenic 50.0%
AACAGGTGAAGGAACGGGAA+CGG - chr2_1:28831103-28831122 None:intergenic 50.0%
GAAGGAACAGGTGAAGGAAC+GGG - chr2_1:28831108-28831127 None:intergenic 50.0%
GAAGAAGGCCTTGAAGGAAC+AGG - chr2_1:28831120-28831139 None:intergenic 50.0%
!! TTCTTCAGAAGCGTCGAGAC+AGG + chr2_1:28831377-28831396 Msa0204020:CDS 50.0%
TTCAATGAAGGAACCACGGG+AGG + chr2_1:28831585-28831604 Msa0204020:CDS 50.0%
! TGATGGTGCTAGCTCCAACA+TGG + chr2_1:28828204-28828223 Msa0204020:CDS 50.0%
TGCTAGCTCCAACATGGTTG+AGG + chr2_1:28828210-28828229 Msa0204020:CDS 50.0%
GCTAGCTCCAACATGGTTGA+GGG + chr2_1:28828211-28828230 Msa0204020:CDS 50.0%
CTAGCTCCAACATGGTTGAG+GGG + chr2_1:28828212-28828231 Msa0204020:CDS 50.0%
CATTGACCCCTCAACCATGT+TGG - chr2_1:28828221-28828240 None:intergenic 50.0%
TGTTGAGGAGAAAAGCAGGG+AGG - chr2_1:28828781-28828800 None:intergenic 50.0%
CTGCTGATGGCAGATTATGG+CGG - chr2_1:28829618-28829637 None:intergenic 50.0%
CCGCAACACGACCATGATTA+AGG - chr2_1:28830081-28830100 None:intergenic 50.0%
! TGTAGGGCTACCTTTTCTGC+AGG - chr2_1:28830918-28830937 None:intergenic 50.0%
AACAGGTGAAGGAACGGGAA+CGG - chr2_1:28831103-28831122 None:intergenic 50.0%
GAAGGAACAGGTGAAGGAAC+GGG - chr2_1:28831108-28831127 None:intergenic 50.0%
GAAGAAGGCCTTGAAGGAAC+AGG - chr2_1:28831120-28831139 None:intergenic 50.0%
!! TTCTTCAGAAGCGTCGAGAC+AGG + chr2_1:28831377-28831396 Msa0204020:CDS 50.0%
TTCAATGAAGGAACCACGGG+AGG + chr2_1:28831585-28831604 Msa0204020:CDS 50.0%
GGCTCATTGTCACCGATGAG+TGG + chr2_1:28828852-28828871 Msa0204020:intron 55.0%
ACAGGTGAAGGAACGGGAAC+GGG - chr2_1:28831102-28831121 None:intergenic 55.0%
GGCCTTGAAGGAACAGGTGA+AGG - chr2_1:28831114-28831133 None:intergenic 55.0%
TGTGGCGAAGAAGGCCTTGA+AGG - chr2_1:28831126-28831145 None:intergenic 55.0%
TCAAGGCCTTCTTCGCCACA+TGG + chr2_1:28831126-28831145 Msa0204020:CDS 55.0%
GCAGTTCCATGTGGCGAAGA+AGG - chr2_1:28831135-28831154 None:intergenic 55.0%
GTTGGCTGAAATTCCTCCCG+TGG - chr2_1:28831601-28831620 None:intergenic 55.0%
GGCTCATTGTCACCGATGAG+TGG + chr2_1:28828852-28828871 Msa0204020:intron 55.0%
ACAGGTGAAGGAACGGGAAC+GGG - chr2_1:28831102-28831121 None:intergenic 55.0%
GGCCTTGAAGGAACAGGTGA+AGG - chr2_1:28831114-28831133 None:intergenic 55.0%
TGTGGCGAAGAAGGCCTTGA+AGG - chr2_1:28831126-28831145 None:intergenic 55.0%
TCAAGGCCTTCTTCGCCACA+TGG + chr2_1:28831126-28831145 Msa0204020:CDS 55.0%
GCAGTTCCATGTGGCGAAGA+AGG - chr2_1:28831135-28831154 None:intergenic 55.0%
GTTGGCTGAAATTCCTCCCG+TGG - chr2_1:28831601-28831620 None:intergenic 55.0%
GCAGGAAAGGGATGTGCCTG+TGG - chr2_1:28831174-28831193 None:intergenic 60.0%
GCAGGAAAGGGATGTGCCTG+TGG - chr2_1:28831174-28831193 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 28827921 28832029 28827921 ID=Msa0204020;Name=Msa0204020
chr2_1 mRNA 28827921 28832029 28827921 ID=Msa0204020-mRNA-1;Parent=Msa0204020;Name=Msa0204020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=215|1|1|1|1|1|5|393|209
chr2_1 exon 28827921 28828260 28827921 ID=Msa0204020-mRNA-1:exon:10369;Parent=Msa0204020-mRNA-1
chr2_1 exon 28830821 28830926 28830821 ID=Msa0204020-mRNA-1:exon:10370;Parent=Msa0204020-mRNA-1
chr2_1 exon 28831027 28831219 28831027 ID=Msa0204020-mRNA-1:exon:10371;Parent=Msa0204020-mRNA-1
chr2_1 exon 28831341 28831398 28831341 ID=Msa0204020-mRNA-1:exon:10372;Parent=Msa0204020-mRNA-1
chr2_1 exon 28831489 28832029 28831489 ID=Msa0204020-mRNA-1:exon:10373;Parent=Msa0204020-mRNA-1
chr2_1 five_prime_UTR 28827921 28828135 28827921 ID=Msa0204020-mRNA-1:five_prime_utr;Parent=Msa0204020-mRNA-1
chr2_1 CDS 28828136 28828260 28828136 ID=Msa0204020-mRNA-1:cds;Parent=Msa0204020-mRNA-1
chr2_1 CDS 28830821 28830926 28830821 ID=Msa0204020-mRNA-1:cds;Parent=Msa0204020-mRNA-1
chr2_1 CDS 28831027 28831219 28831027 ID=Msa0204020-mRNA-1:cds;Parent=Msa0204020-mRNA-1
chr2_1 CDS 28831341 28831398 28831341 ID=Msa0204020-mRNA-1:cds;Parent=Msa0204020-mRNA-1
chr2_1 CDS 28831489 28831636 28831489 ID=Msa0204020-mRNA-1:cds;Parent=Msa0204020-mRNA-1
chr2_1 three_prime_UTR 28831637 28832029 28831637 ID=Msa0204020-mRNA-1:three_prime_utr;Parent=Msa0204020-mRNA-1
Gene Sequence

>Msa0204020

ATGGATGGTGTTACTGTTAAGGTTGAGCCAGAGAAGTTTACTGTTCTAGAATCTTCTCCTATTGCTGTTGATGGTGCTAGCTCCAACATGGTTGAGGGGTCAATGATGAATTCTTCAGCAAACAAGTCAATGCCAGCATCTGGAATGAATCCAGTGATTGCTAATACAACTCAGCTTACCATCTTCTATAATGGGAGTATTTGTATCTATGATGGAATTCCTGCAGAAAAGGTGCAAGAAATAATGCGCATTGCTGCTGCTGCTGCCAAGTCTAGTGAAACGAAGAAGATTGTGAAACAATCTCCCGTTCCCGTTCCTTCACCTGTTCCTTCAAGGCCTTCTTCGCCACATGGAACTGCTGATAATATCGCTTCACCACAGGCACATCCCTTTCCTGCAAAGAATTCTATCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAATGTTTCTTCAGAAGCGTCGAGACAGGTTGGGTAGTAAAGCTCCCTATCCTTCCTCGCCAAAAACAAAGGTAGCTGACAACATGGAGAACAACTTCGGTGCTGACAATTCGCCAGATTCGGTTTCAATGAAGGAACCACGGGAGGAATTTCAGCCAACTATATCTGCATCTTGA

Protein sequence

>Msa0204020

MDGVTVKVEPEKFTVLESSPIAVDGASSNMVEGSMMNSSANKSMPASGMNPVIANTTQLTIFYNGSICIYDGIPAEKVQEIMRIAAAAAKSSETKKIVKQSPVPVPSPVPSRPSSPHGTADNIASPQAHPFPAKNSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPKTKVADNMENNFGADNSPDSVSMKEPREEFQPTISAS*