AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122930 MtrunA17_Chr1g0183221 100.000 182 0 0 1 182 1 182 1.42e-136 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122930 AT4G28660.1 68.966 145 45 0 37 181 37 181 1.07e-71 215
Msa0122930 AT4G28660.2 68.966 145 45 0 37 181 52 196 2.63e-71 214

Find 85 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGAATGAATTGAATTT+TGG 0.043355 1_3:+49809569 None:intergenic
ACTAGTGCCATTTATCATTA+AGG 0.216833 1_3:-49808765 Msa0122930:three_prime_UTR
AAAGGGACTTCACCACTAAA+AGG 0.270678 1_3:-49808838 Msa0122930:three_prime_UTR
AATAAATCCTTAATGATAAA+TGG 0.272615 1_3:+49808758 None:intergenic
TTTAGTGGTGAAGTCCCTTT+TGG 0.307576 1_3:+49808841 None:intergenic
ACAGAGGACAAAAGAATAGA+AGG 0.342749 1_3:+49809214 None:intergenic
CAATAAGCTTTGGGATCTAT+AGG 0.360359 1_3:+49809144 None:intergenic
GGAGAAGTAGGCGACATTAC+TGG 0.365446 1_3:-49809441 Msa0122930:CDS
ATTTGTGGGTGACTATTTAC+CGG 0.373619 1_3:-49808985 Msa0122930:three_prime_UTR
CCCAAAATTCAATTCATTCA+AGG 0.375868 1_3:-49809570 Msa0122930:CDS
TGTATATCATTAATAAATAC+AGG 0.395234 1_3:-49808686 Msa0122930:three_prime_UTR
TTCCTACTGAGCTTATTTGT+GGG 0.403592 1_3:-49808999 Msa0122930:three_prime_UTR
TAGAAGACAACCACTAGAAA+AGG 0.405224 1_3:+49808658 None:intergenic
TTTCCTACTGAGCTTATTTG+TGG 0.411612 1_3:-49809000 Msa0122930:three_prime_UTR
AACTTAAATTCCTCATTCAA+TGG 0.412356 1_3:-49809681 Msa0122930:CDS
CATTCCAATTCGATAAAATC+TGG 0.412583 1_3:+49808897 None:intergenic
TTCCCCGCCATCATGATAAC+CGG 0.429760 1_3:+49809594 None:intergenic
TGGAGTCCGCATTATATACT+TGG 0.434350 1_3:+49809332 None:intergenic
CAAATGGCATGGCTATCTTC+AGG 0.434591 1_3:-49809494 Msa0122930:CDS
AGGTGTAGAACAATAAGCTT+TGG 0.436512 1_3:+49809134 None:intergenic
ATTTGCATGTGCCAAGTTTG+AGG 0.436765 1_3:-49809653 Msa0122930:CDS
TAATGCGGACTCCACGGGAC+TGG 0.442232 1_3:-49809323 Msa0122930:CDS
AGATATTCTACTACGATAAC+CGG 0.444496 1_3:+49808966 None:intergenic
AAATCAAAGGATGGAACAAA+TGG 0.447952 1_3:-49809510 Msa0122930:CDS
TTTGATTCTTCTGGAGAAGT+AGG 0.453284 1_3:-49809453 Msa0122930:CDS
GGATAGGTTCATGAGATTCA+TGG 0.460311 1_3:-49809301 Msa0122930:CDS
TATTTCCTCCTCTATTAGCT+AGG 0.463738 1_3:+49808942 None:intergenic
CATTTACATCAACAGATTGA+AGG 0.465513 1_3:+49809391 None:intergenic
GCCACTTCTTTAATTATCCA+TGG 0.476745 1_3:-49809711 Msa0122930:CDS
GAGCGATACTCTGATGCTAA+TGG 0.480616 1_3:-49809279 Msa0122930:CDS
GGTGTAGAACAATAAGCTTT+GGG 0.488921 1_3:+49809135 None:intergenic
AATTTAAGTTCAAACTTCCA+TGG 0.492114 1_3:+49809694 None:intergenic
CATGATAACCGGCATGTGCA+TGG 0.501061 1_3:+49809605 None:intergenic
ATGCCGGTTATCATGATGGC+GGG 0.504435 1_3:-49809597 Msa0122930:CDS
AGACCCTGCTAGGATCCAAA+AGG 0.506528 1_3:-49808856 Msa0122930:three_prime_UTR
AAGGGACTTCACCACTAAAA+GGG 0.511294 1_3:-49808837 Msa0122930:three_prime_UTR
CAGAAGCCACGCTCATACTC+AGG 0.512959 1_3:-49810448 Msa0122930:intron
CTTATTGTTCTACACCTCTA+CGG 0.516117 1_3:-49809128 Msa0122930:three_prime_UTR
AATGCGGACTCCACGGGACT+GGG 0.524053 1_3:-49809322 Msa0122930:CDS
GGACTCCACGGGACTGGGAT+AGG 0.532501 1_3:-49809317 Msa0122930:CDS
ATCCATTGGTGTTGCTGACA+TGG 0.533248 1_3:+49810692 None:intergenic
ACATTATCATCACAAGTGAA+TGG 0.534967 1_3:-49810639 Msa0122930:five_prime_UTR
ATGGATTGTCACAAATCTGA+TGG 0.535998 1_3:-49810675 Msa0122930:five_prime_UTR
AGAAGACAACCACTAGAAAA+GGG 0.540425 1_3:+49808659 None:intergenic
GTATATAATGCGGACTCCAC+GGG 0.541871 1_3:-49809328 Msa0122930:CDS
TTTGAGTACTAGACCCTGCT+AGG 0.544015 1_3:-49808866 Msa0122930:three_prime_UTR
GCACATGCCGGTTATCATGA+TGG 0.545209 1_3:-49809601 Msa0122930:CDS
ATACTTGGCTTCAATTCCTG+AGG 0.546032 1_3:+49809347 None:intergenic
ATCATCGGTAACCTCAAACT+TGG 0.546137 1_3:+49809642 None:intergenic
ATGATAACCGGCATGTGCAT+GGG 0.547496 1_3:+49809606 None:intergenic
TCAGATTTGTGACAATCCAT+TGG 0.550116 1_3:+49810678 None:intergenic
ATTTCCTCCTCTATTAGCTA+GGG 0.550628 1_3:+49808943 None:intergenic
AATTGAGTTGTAGAGTGGAG+AGG 0.552148 1_3:+49810471 None:intergenic
TCCATGGATAATTAAAGAAG+TGG 0.555425 1_3:+49809710 None:intergenic
AATATCTCCCTAGCTAATAG+AGG 0.557674 1_3:-49808950 Msa0122930:three_prime_UTR
TTTGTCAACGGAAAGCCCTC+AGG 0.559746 1_3:-49809363 Msa0122930:CDS
ATGGCACTAGTAGAGATCAT+TGG 0.560532 1_3:+49808777 None:intergenic
GTGACACAATAGACATTCTG+TGG 0.563679 1_3:-49810608 Msa0122930:five_prime_UTR
AGTATATAATGCGGACTCCA+CGG 0.565595 1_3:-49809329 Msa0122930:CDS
TACTTGGCTTCAATTCCTGA+GGG 0.571164 1_3:+49809348 None:intergenic
TGCCATGTCAGCAACACCAA+TGG 0.579115 1_3:-49810694 Msa0122930:five_prime_UTR
TCTATAGGAAAGCAGTTACA+TGG 0.580466 1_3:+49809159 None:intergenic
CAGAGGACAAAAGAATAGAA+GGG 0.583900 1_3:+49809215 None:intergenic
ACGCTATAAGTTTACAACCT+CGG 0.587867 1_3:+49808728 None:intergenic
AAGCTGACAAAATCAAAGGA+TGG 0.597295 1_3:-49809519 Msa0122930:CDS
CACCCACAAATAAGCTCAGT+AGG 0.597480 1_3:+49808997 None:intergenic
GTAAATGCTAAATTTGTCAA+CGG 0.597700 1_3:-49809375 Msa0122930:CDS
GACCCTGCTAGGATCCAAAA+GGG 0.605011 1_3:-49808855 Msa0122930:three_prime_UTR
AAAAGATAGAAGTAAAATTG+TGG 0.605819 1_3:+49810584 None:intergenic
CAAATGTTGACCATTGAATG+AGG 0.613868 1_3:+49809671 None:intergenic
ATCTCCCTAGCTAATAGAGG+AGG 0.620526 1_3:-49808947 Msa0122930:three_prime_UTR
TGCCGGTTATCATGATGGCG+GGG 0.623175 1_3:-49809596 Msa0122930:CDS
AAAGGATGGAACAAATGGCA+TGG 0.632758 1_3:-49809505 Msa0122930:CDS
AGGATTTATTATATACTCCG+AGG 0.632844 1_3:-49808745 Msa0122930:three_prime_UTR
GAAAACAAACTTCTTGACAG+AGG 0.633258 1_3:+49809198 None:intergenic
ATAATAAAAGAAAGCCGTAG+AGG 0.633863 1_3:+49809114 None:intergenic
CAATCAGCAAATGATAGACG+TGG 0.641310 1_3:+49810721 None:intergenic
TTATGACAACTAGAGAAGCA+AGG 0.651832 1_3:-49810557 Msa0122930:five_prime_UTR
CATGCCGGTTATCATGATGG+CGG 0.658092 1_3:-49809598 Msa0122930:CDS
TGTGAAGCTGACAAAATCAA+AGG 0.662632 1_3:-49809523 Msa0122930:CDS
TTCTGAATTGAGTTGTAGAG+TGG 0.666148 1_3:+49810466 None:intergenic
ATGAACCTATCCCAGTCCCG+TGG 0.667895 1_3:+49809312 None:intergenic
TTTGTACCTGAGTATGAGCG+TGG 0.677678 1_3:+49810442 None:intergenic
TTGAAGCCAAGTATATAATG+CGG 0.690031 1_3:-49809338 Msa0122930:CDS
ATAGGAAAGCAGTTACATGG+TGG 0.743263 1_3:+49809162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTATTATGATTAAAAA+AGG - chr1_3:49810292-49810311 Msa0122930:intron 10.0%
!!! TCTTTTATTATGATTAAAAA+AGG - chr1_3:49810292-49810311 Msa0122930:intron 10.0%
!! AAATAAACAAAACAAAAGAT+GGG - chr1_3:49809198-49809217 Msa0122930:three_prime_UTR 15.0%
!! AATAAATCCTTAATGATAAA+TGG + chr1_3:49810639-49810658 None:intergenic 15.0%
!! TGTATATCATTAATAAATAC+AGG - chr1_3:49810708-49810727 Msa0122930:five_prime_UTR 15.0%
!! AAATAAACAAAACAAAAGAT+GGG - chr1_3:49809198-49809217 Msa0122930:three_prime_UTR 15.0%
!! AATAAATCCTTAATGATAAA+TGG + chr1_3:49810639-49810658 None:intergenic 15.0%
!! TGTATATCATTAATAAATAC+AGG - chr1_3:49810708-49810727 Msa0122930:five_prime_UTR 15.0%
!! AAAAGATAGAAGTAAAATTG+TGG + chr1_3:49808813-49808832 None:intergenic 20.0%
!! GTAAATTCATAATATGAATC+AGG - chr1_3:49809097-49809116 Msa0122930:three_prime_UTR 20.0%
!! TTAATTTACAAGTCAACAAT+TGG + chr1_3:49809160-49809179 None:intergenic 20.0%
!!! CATCTTTTGTTTTGTTTATT+TGG + chr1_3:49809199-49809218 None:intergenic 20.0%
!! CAAATAAACAAAACAAAAGA+TGG - chr1_3:49809197-49809216 Msa0122930:three_prime_UTR 20.0%
!! AAAAGATAGAAGTAAAATTG+TGG + chr1_3:49808813-49808832 None:intergenic 20.0%
!! GTAAATTCATAATATGAATC+AGG - chr1_3:49809097-49809116 Msa0122930:three_prime_UTR 20.0%
!! TTAATTTACAAGTCAACAAT+TGG + chr1_3:49809160-49809179 None:intergenic 20.0%
!!! CATCTTTTGTTTTGTTTATT+TGG + chr1_3:49809199-49809218 None:intergenic 20.0%
!! CAAATAAACAAAACAAAAGA+TGG - chr1_3:49809197-49809216 Msa0122930:three_prime_UTR 20.0%
!!! CTTTGTTTGTTATTGTTTTG+TGG - chr1_3:49808996-49809015 Msa0122930:three_prime_UTR 25.0%
!!! ATGTTTTGAGAACTTATGTT+TGG - chr1_3:49809029-49809048 Msa0122930:three_prime_UTR 25.0%
!! ATGAATCAGGTTAACATTTT+TGG - chr1_3:49809110-49809129 Msa0122930:three_prime_UTR 25.0%
!! TGAATCAGGTTAACATTTTT+GGG - chr1_3:49809111-49809130 Msa0122930:three_prime_UTR 25.0%
! TGTTGTCAAGAAAAAAATGT+TGG + chr1_3:49809254-49809273 None:intergenic 25.0%
! TTATACTTGTACTAGAATTG+TGG - chr1_3:49809393-49809412 Msa0122930:CDS 25.0%
! AGAGAATACTTGAAACTAAT+GGG + chr1_3:49809500-49809519 None:intergenic 25.0%
! TAGAGAATACTTGAAACTAA+TGG + chr1_3:49809501-49809520 None:intergenic 25.0%
!!! GCATCACTTTTTATTTTCTA+TGG + chr1_3:49809613-49809632 None:intergenic 25.0%
!! AATTTAAGTTCAAACTTCCA+TGG + chr1_3:49809703-49809722 None:intergenic 25.0%
! AACTTAAATTCCTCATTCAA+TGG - chr1_3:49809713-49809732 Msa0122930:CDS 25.0%
!! CCTTGAATGAATTGAATTTT+GGG + chr1_3:49809827-49809846 None:intergenic 25.0%
!! TCCTTGAATGAATTGAATTT+TGG + chr1_3:49809828-49809847 None:intergenic 25.0%
!! TGGTTTTTATATGATTGATG+AGG - chr1_3:49809973-49809992 Msa0122930:intron 25.0%
!! TTTTATATGATTGATGAGGA+AGG - chr1_3:49809977-49809996 Msa0122930:intron 25.0%
! GTAAATGCTAAATTTGTCAA+CGG - chr1_3:49810019-49810038 Msa0122930:intron 25.0%
!!! CTTTGTTTGTTATTGTTTTG+TGG - chr1_3:49808996-49809015 Msa0122930:three_prime_UTR 25.0%
!!! ATGTTTTGAGAACTTATGTT+TGG - chr1_3:49809029-49809048 Msa0122930:three_prime_UTR 25.0%
!! ATGAATCAGGTTAACATTTT+TGG - chr1_3:49809110-49809129 Msa0122930:three_prime_UTR 25.0%
!! TGAATCAGGTTAACATTTTT+GGG - chr1_3:49809111-49809130 Msa0122930:three_prime_UTR 25.0%
! TGTTGTCAAGAAAAAAATGT+TGG + chr1_3:49809254-49809273 None:intergenic 25.0%
! TTATACTTGTACTAGAATTG+TGG - chr1_3:49809393-49809412 Msa0122930:CDS 25.0%
! AGAGAATACTTGAAACTAAT+GGG + chr1_3:49809500-49809519 None:intergenic 25.0%
! TAGAGAATACTTGAAACTAA+TGG + chr1_3:49809501-49809520 None:intergenic 25.0%
!!! GCATCACTTTTTATTTTCTA+TGG + chr1_3:49809613-49809632 None:intergenic 25.0%
!! AATTTAAGTTCAAACTTCCA+TGG + chr1_3:49809703-49809722 None:intergenic 25.0%
! AACTTAAATTCCTCATTCAA+TGG - chr1_3:49809713-49809732 Msa0122930:CDS 25.0%
!! CCTTGAATGAATTGAATTTT+GGG + chr1_3:49809827-49809846 None:intergenic 25.0%
!! TCCTTGAATGAATTGAATTT+TGG + chr1_3:49809828-49809847 None:intergenic 25.0%
!! TGGTTTTTATATGATTGATG+AGG - chr1_3:49809973-49809992 Msa0122930:intron 25.0%
!! TTTTATATGATTGATGAGGA+AGG - chr1_3:49809977-49809996 Msa0122930:intron 25.0%
! GTAAATGCTAAATTTGTCAA+CGG - chr1_3:49810019-49810038 Msa0122930:intron 25.0%
ACATTATCATCACAAGTGAA+TGG - chr1_3:49808755-49808774 Msa0122930:three_prime_UTR 30.0%
AAGTTCTCAAAACATTTCAC+AGG + chr1_3:49809024-49809043 None:intergenic 30.0%
! GAATCAGGTTAACATTTTTG+GGG - chr1_3:49809112-49809131 Msa0122930:three_prime_UTR 30.0%
CAATTGGAGCAAACTATATA+AGG + chr1_3:49809144-49809163 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGCATTC+TGG + chr1_3:49809191-49809210 None:intergenic 30.0%
TTCTTGCATTGTTCAGTATT+TGG - chr1_3:49809278-49809297 Msa0122930:CDS 30.0%
ATCATGTGTTCAAGATTTCA+AGG + chr1_3:49809572-49809591 None:intergenic 30.0%
TCCATGGATAATTAAAGAAG+TGG + chr1_3:49809687-49809706 None:intergenic 30.0%
!!! GGAGTTTTTTGAGTAATCAT+CGG + chr1_3:49809770-49809789 None:intergenic 30.0%
CCCAAAATTCAATTCATTCA+AGG - chr1_3:49809824-49809843 Msa0122930:intron 30.0%
AAATCAAAGGATGGAACAAA+TGG - chr1_3:49809884-49809903 Msa0122930:intron 30.0%
CATTTACATCAACAGATTGA+AGG + chr1_3:49810006-49810025 None:intergenic 30.0%
TTGAAGCCAAGTATATAATG+CGG - chr1_3:49810056-49810075 Msa0122930:intron 30.0%
ATAATAAAAGAAAGCCGTAG+AGG + chr1_3:49810283-49810302 None:intergenic 30.0%
! AAAAGGCAAGAGTTTTTGTT+AGG - chr1_3:49810309-49810328 Msa0122930:intron 30.0%
AGATATTCTACTACGATAAC+CGG + chr1_3:49810431-49810450 None:intergenic 30.0%
CATTCCAATTCGATAAAATC+TGG + chr1_3:49810500-49810519 None:intergenic 30.0%
!! ACTAGTGCCATTTATCATTA+AGG - chr1_3:49810629-49810648 Msa0122930:five_prime_UTR 30.0%
AGGATTTATTATATACTCCG+AGG - chr1_3:49810649-49810668 Msa0122930:five_prime_UTR 30.0%
ACATTATCATCACAAGTGAA+TGG - chr1_3:49808755-49808774 Msa0122930:three_prime_UTR 30.0%
AAGTTCTCAAAACATTTCAC+AGG + chr1_3:49809024-49809043 None:intergenic 30.0%
! GAATCAGGTTAACATTTTTG+GGG - chr1_3:49809112-49809131 Msa0122930:three_prime_UTR 30.0%
CAATTGGAGCAAACTATATA+AGG + chr1_3:49809144-49809163 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGCATTC+TGG + chr1_3:49809191-49809210 None:intergenic 30.0%
TTCTTGCATTGTTCAGTATT+TGG - chr1_3:49809278-49809297 Msa0122930:CDS 30.0%
ATCATGTGTTCAAGATTTCA+AGG + chr1_3:49809572-49809591 None:intergenic 30.0%
TCCATGGATAATTAAAGAAG+TGG + chr1_3:49809687-49809706 None:intergenic 30.0%
!!! GGAGTTTTTTGAGTAATCAT+CGG + chr1_3:49809770-49809789 None:intergenic 30.0%
CCCAAAATTCAATTCATTCA+AGG - chr1_3:49809824-49809843 Msa0122930:intron 30.0%
AAATCAAAGGATGGAACAAA+TGG - chr1_3:49809884-49809903 Msa0122930:intron 30.0%
CATTTACATCAACAGATTGA+AGG + chr1_3:49810006-49810025 None:intergenic 30.0%
TTGAAGCCAAGTATATAATG+CGG - chr1_3:49810056-49810075 Msa0122930:intron 30.0%
ATAATAAAAGAAAGCCGTAG+AGG + chr1_3:49810283-49810302 None:intergenic 30.0%
! AAAAGGCAAGAGTTTTTGTT+AGG - chr1_3:49810309-49810328 Msa0122930:intron 30.0%
AGATATTCTACTACGATAAC+CGG + chr1_3:49810431-49810450 None:intergenic 30.0%
CATTCCAATTCGATAAAATC+TGG + chr1_3:49810500-49810519 None:intergenic 30.0%
!! ACTAGTGCCATTTATCATTA+AGG - chr1_3:49810629-49810648 Msa0122930:five_prime_UTR 30.0%
AGGATTTATTATATACTCCG+AGG - chr1_3:49810649-49810668 Msa0122930:five_prime_UTR 30.0%
TCAGATTTGTGACAATCCAT+TGG + chr1_3:49808719-49808738 None:intergenic 35.0%
! ATGGATTGTCACAAATCTGA+TGG - chr1_3:49808719-49808738 Msa0122930:three_prime_UTR 35.0%
TTATGACAACTAGAGAAGCA+AGG - chr1_3:49808837-49808856 Msa0122930:three_prime_UTR 35.0%
! AACTGCTTCTCTCTTTTTCT+TGG - chr1_3:49808870-49808889 Msa0122930:three_prime_UTR 35.0%
! TTCTCTCTTTTTCTTGGCAA+TGG - chr1_3:49808876-49808895 Msa0122930:three_prime_UTR 35.0%
! TTCTGAATTGAGTTGTAGAG+TGG + chr1_3:49808931-49808950 None:intergenic 35.0%
!!! GGTTAACATTTTTGGGGTTA+AGG - chr1_3:49809118-49809137 Msa0122930:three_prime_UTR 35.0%
GAACATCATACATACCATCA+GGG + chr1_3:49809329-49809348 None:intergenic 35.0%
AGAACATCATACATACCATC+AGG + chr1_3:49809330-49809349 None:intergenic 35.0%
GATGGTATGTATGATGTTCT+TGG - chr1_3:49809330-49809349 Msa0122930:CDS 35.0%
TACTAGAATTGTGGAGTAAC+AGG - chr1_3:49809402-49809421 Msa0122930:CDS 35.0%
TGTTCAAGATTTCAAGGTCA+GGG + chr1_3:49809566-49809585 None:intergenic 35.0%
GCCACTTCTTTAATTATCCA+TGG - chr1_3:49809683-49809702 Msa0122930:CDS 35.0%
CAAATGTTGACCATTGAATG+AGG + chr1_3:49809726-49809745 None:intergenic 35.0%
TGTGAAGCTGACAAAATCAA+AGG - chr1_3:49809871-49809890 Msa0122930:intron 35.0%
AAGCTGACAAAATCAAAGGA+TGG - chr1_3:49809875-49809894 Msa0122930:intron 35.0%
CCAGAAGAATCAAAAACTGA+GGG + chr1_3:49809935-49809954 None:intergenic 35.0%
TCCAGAAGAATCAAAAACTG+AGG + chr1_3:49809936-49809955 None:intergenic 35.0%
! TTTGATTCTTCTGGAGAAGT+AGG - chr1_3:49809941-49809960 Msa0122930:intron 35.0%
CAGAGGACAAAAGAATAGAA+GGG + chr1_3:49810182-49810201 None:intergenic 35.0%
ACAGAGGACAAAAGAATAGA+AGG + chr1_3:49810183-49810202 None:intergenic 35.0%
GAAAACAAACTTCTTGACAG+AGG + chr1_3:49810199-49810218 None:intergenic 35.0%
TCTATAGGAAAGCAGTTACA+TGG + chr1_3:49810238-49810257 None:intergenic 35.0%
!! CAATAAGCTTTGGGATCTAT+AGG + chr1_3:49810253-49810272 None:intergenic 35.0%
GGTGTAGAACAATAAGCTTT+GGG + chr1_3:49810262-49810281 None:intergenic 35.0%
AGGTGTAGAACAATAAGCTT+TGG + chr1_3:49810263-49810282 None:intergenic 35.0%
CTTATTGTTCTACACCTCTA+CGG - chr1_3:49810266-49810285 Msa0122930:intron 35.0%
TTTCCTACTGAGCTTATTTG+TGG - chr1_3:49810394-49810413 Msa0122930:intron 35.0%
TTCCTACTGAGCTTATTTGT+GGG - chr1_3:49810395-49810414 Msa0122930:intron 35.0%
ATTTGTGGGTGACTATTTAC+CGG - chr1_3:49810409-49810428 Msa0122930:intron 35.0%
AATATCTCCCTAGCTAATAG+AGG - chr1_3:49810444-49810463 Msa0122930:intron 35.0%
ATTTCCTCCTCTATTAGCTA+GGG + chr1_3:49810454-49810473 None:intergenic 35.0%
TATTTCCTCCTCTATTAGCT+AGG + chr1_3:49810455-49810474 None:intergenic 35.0%
! CTAGCCAGATTTTATCGAAT+TGG - chr1_3:49810493-49810512 Msa0122930:CDS 35.0%
ACGCTATAAGTTTACAACCT+CGG + chr1_3:49810669-49810688 None:intergenic 35.0%
TCAGATTTGTGACAATCCAT+TGG + chr1_3:49808719-49808738 None:intergenic 35.0%
! ATGGATTGTCACAAATCTGA+TGG - chr1_3:49808719-49808738 Msa0122930:three_prime_UTR 35.0%
TTATGACAACTAGAGAAGCA+AGG - chr1_3:49808837-49808856 Msa0122930:three_prime_UTR 35.0%
! AACTGCTTCTCTCTTTTTCT+TGG - chr1_3:49808870-49808889 Msa0122930:three_prime_UTR 35.0%
! TTCTCTCTTTTTCTTGGCAA+TGG - chr1_3:49808876-49808895 Msa0122930:three_prime_UTR 35.0%
! TTCTGAATTGAGTTGTAGAG+TGG + chr1_3:49808931-49808950 None:intergenic 35.0%
!!! GGTTAACATTTTTGGGGTTA+AGG - chr1_3:49809118-49809137 Msa0122930:three_prime_UTR 35.0%
GAACATCATACATACCATCA+GGG + chr1_3:49809329-49809348 None:intergenic 35.0%
AGAACATCATACATACCATC+AGG + chr1_3:49809330-49809349 None:intergenic 35.0%
GATGGTATGTATGATGTTCT+TGG - chr1_3:49809330-49809349 Msa0122930:CDS 35.0%
TACTAGAATTGTGGAGTAAC+AGG - chr1_3:49809402-49809421 Msa0122930:CDS 35.0%
TGTTCAAGATTTCAAGGTCA+GGG + chr1_3:49809566-49809585 None:intergenic 35.0%
GCCACTTCTTTAATTATCCA+TGG - chr1_3:49809683-49809702 Msa0122930:CDS 35.0%
CAAATGTTGACCATTGAATG+AGG + chr1_3:49809726-49809745 None:intergenic 35.0%
TGTGAAGCTGACAAAATCAA+AGG - chr1_3:49809871-49809890 Msa0122930:intron 35.0%
AAGCTGACAAAATCAAAGGA+TGG - chr1_3:49809875-49809894 Msa0122930:intron 35.0%
CCAGAAGAATCAAAAACTGA+GGG + chr1_3:49809935-49809954 None:intergenic 35.0%
TCCAGAAGAATCAAAAACTG+AGG + chr1_3:49809936-49809955 None:intergenic 35.0%
! TTTGATTCTTCTGGAGAAGT+AGG - chr1_3:49809941-49809960 Msa0122930:intron 35.0%
CAGAGGACAAAAGAATAGAA+GGG + chr1_3:49810182-49810201 None:intergenic 35.0%
ACAGAGGACAAAAGAATAGA+AGG + chr1_3:49810183-49810202 None:intergenic 35.0%
GAAAACAAACTTCTTGACAG+AGG + chr1_3:49810199-49810218 None:intergenic 35.0%
TCTATAGGAAAGCAGTTACA+TGG + chr1_3:49810238-49810257 None:intergenic 35.0%
!! CAATAAGCTTTGGGATCTAT+AGG + chr1_3:49810253-49810272 None:intergenic 35.0%
GGTGTAGAACAATAAGCTTT+GGG + chr1_3:49810262-49810281 None:intergenic 35.0%
AGGTGTAGAACAATAAGCTT+TGG + chr1_3:49810263-49810282 None:intergenic 35.0%
CTTATTGTTCTACACCTCTA+CGG - chr1_3:49810266-49810285 Msa0122930:intron 35.0%
TTTCCTACTGAGCTTATTTG+TGG - chr1_3:49810394-49810413 Msa0122930:intron 35.0%
TTCCTACTGAGCTTATTTGT+GGG - chr1_3:49810395-49810414 Msa0122930:intron 35.0%
ATTTGTGGGTGACTATTTAC+CGG - chr1_3:49810409-49810428 Msa0122930:intron 35.0%
AATATCTCCCTAGCTAATAG+AGG - chr1_3:49810444-49810463 Msa0122930:intron 35.0%
ATTTCCTCCTCTATTAGCTA+GGG + chr1_3:49810454-49810473 None:intergenic 35.0%
TATTTCCTCCTCTATTAGCT+AGG + chr1_3:49810455-49810474 None:intergenic 35.0%
! CTAGCCAGATTTTATCGAAT+TGG - chr1_3:49810493-49810512 Msa0122930:CDS 35.0%
ACGCTATAAGTTTACAACCT+CGG + chr1_3:49810669-49810688 None:intergenic 35.0%
CAATCAGCAAATGATAGACG+TGG + chr1_3:49808676-49808695 None:intergenic 40.0%
GTGACACAATAGACATTCTG+TGG - chr1_3:49808786-49808805 Msa0122930:three_prime_UTR 40.0%
! AATTGAGTTGTAGAGTGGAG+AGG + chr1_3:49808926-49808945 None:intergenic 40.0%
TAATATAGCTTCCACCCTGA+TGG - chr1_3:49809312-49809331 Msa0122930:CDS 40.0%
ATGTTCTTGGCAACACTCTA+TGG - chr1_3:49809343-49809362 Msa0122930:CDS 40.0%
CAACACTCTATGGAACAGAA+TGG - chr1_3:49809353-49809372 Msa0122930:CDS 40.0%
TCTATGGAACAGAATGGCAT+TGG - chr1_3:49809359-49809378 Msa0122930:CDS 40.0%
CTATGGAACAGAATGGCATT+GGG - chr1_3:49809360-49809379 Msa0122930:CDS 40.0%
GTTCAAGATTTCAAGGTCAG+GGG + chr1_3:49809565-49809584 None:intergenic 40.0%
GTGTTCAAGATTTCAAGGTC+AGG + chr1_3:49809567-49809586 None:intergenic 40.0%
ATTTGCATGTGCCAAGTTTG+AGG - chr1_3:49809741-49809760 Msa0122930:intron 40.0%
ATCATCGGTAACCTCAAACT+TGG + chr1_3:49809755-49809774 None:intergenic 40.0%
! GATTTTGTCAGCTTCACATC+AGG + chr1_3:49809869-49809888 None:intergenic 40.0%
AAAGGATGGAACAAATGGCA+TGG - chr1_3:49809889-49809908 Msa0122930:intron 40.0%
!! CCCTCAGTTTTTGATTCTTC+TGG - chr1_3:49809932-49809951 Msa0122930:intron 40.0%
TACTTGGCTTCAATTCCTGA+GGG + chr1_3:49810049-49810068 None:intergenic 40.0%
ATACTTGGCTTCAATTCCTG+AGG + chr1_3:49810050-49810069 None:intergenic 40.0%
TGGAGTCCGCATTATATACT+TGG + chr1_3:49810065-49810084 None:intergenic 40.0%
AGTATATAATGCGGACTCCA+CGG - chr1_3:49810065-49810084 Msa0122930:intron 40.0%
GGATAGGTTCATGAGATTCA+TGG - chr1_3:49810093-49810112 Msa0122930:intron 40.0%
ATAGGAAAGCAGTTACATGG+TGG + chr1_3:49810235-49810254 None:intergenic 40.0%
! TTTAGTGGTGAAGTCCCTTT+TGG + chr1_3:49810556-49810575 None:intergenic 40.0%
AAAGGGACTTCACCACTAAA+AGG - chr1_3:49810556-49810575 Msa0122930:five_prime_UTR 40.0%
AAGGGACTTCACCACTAAAA+GGG - chr1_3:49810557-49810576 Msa0122930:five_prime_UTR 40.0%
! GAACTCAACATCCCTTTTAG+TGG + chr1_3:49810571-49810590 None:intergenic 40.0%
ATGGCACTAGTAGAGATCAT+TGG + chr1_3:49810620-49810639 None:intergenic 40.0%
CAATCAGCAAATGATAGACG+TGG + chr1_3:49808676-49808695 None:intergenic 40.0%
GTGACACAATAGACATTCTG+TGG - chr1_3:49808786-49808805 Msa0122930:three_prime_UTR 40.0%
! AATTGAGTTGTAGAGTGGAG+AGG + chr1_3:49808926-49808945 None:intergenic 40.0%
TAATATAGCTTCCACCCTGA+TGG - chr1_3:49809312-49809331 Msa0122930:CDS 40.0%
ATGTTCTTGGCAACACTCTA+TGG - chr1_3:49809343-49809362 Msa0122930:CDS 40.0%
CAACACTCTATGGAACAGAA+TGG - chr1_3:49809353-49809372 Msa0122930:CDS 40.0%
TCTATGGAACAGAATGGCAT+TGG - chr1_3:49809359-49809378 Msa0122930:CDS 40.0%
CTATGGAACAGAATGGCATT+GGG - chr1_3:49809360-49809379 Msa0122930:CDS 40.0%
GTTCAAGATTTCAAGGTCAG+GGG + chr1_3:49809565-49809584 None:intergenic 40.0%
GTGTTCAAGATTTCAAGGTC+AGG + chr1_3:49809567-49809586 None:intergenic 40.0%
ATTTGCATGTGCCAAGTTTG+AGG - chr1_3:49809741-49809760 Msa0122930:intron 40.0%
ATCATCGGTAACCTCAAACT+TGG + chr1_3:49809755-49809774 None:intergenic 40.0%
! GATTTTGTCAGCTTCACATC+AGG + chr1_3:49809869-49809888 None:intergenic 40.0%
AAAGGATGGAACAAATGGCA+TGG - chr1_3:49809889-49809908 Msa0122930:intron 40.0%
!! CCCTCAGTTTTTGATTCTTC+TGG - chr1_3:49809932-49809951 Msa0122930:intron 40.0%
TACTTGGCTTCAATTCCTGA+GGG + chr1_3:49810049-49810068 None:intergenic 40.0%
ATACTTGGCTTCAATTCCTG+AGG + chr1_3:49810050-49810069 None:intergenic 40.0%
TGGAGTCCGCATTATATACT+TGG + chr1_3:49810065-49810084 None:intergenic 40.0%
AGTATATAATGCGGACTCCA+CGG - chr1_3:49810065-49810084 Msa0122930:intron 40.0%
GGATAGGTTCATGAGATTCA+TGG - chr1_3:49810093-49810112 Msa0122930:intron 40.0%
ATAGGAAAGCAGTTACATGG+TGG + chr1_3:49810235-49810254 None:intergenic 40.0%
! TTTAGTGGTGAAGTCCCTTT+TGG + chr1_3:49810556-49810575 None:intergenic 40.0%
AAAGGGACTTCACCACTAAA+AGG - chr1_3:49810556-49810575 Msa0122930:five_prime_UTR 40.0%
AAGGGACTTCACCACTAAAA+GGG - chr1_3:49810557-49810576 Msa0122930:five_prime_UTR 40.0%
! GAACTCAACATCCCTTTTAG+TGG + chr1_3:49810571-49810590 None:intergenic 40.0%
ATGGCACTAGTAGAGATCAT+TGG + chr1_3:49810620-49810639 None:intergenic 40.0%
!! ATCCATTGGTGTTGCTGACA+TGG + chr1_3:49808705-49808724 None:intergenic 45.0%
TTTGTACCTGAGTATGAGCG+TGG + chr1_3:49808955-49808974 None:intergenic 45.0%
CATCATACATACCATCAGGG+TGG + chr1_3:49809326-49809345 None:intergenic 45.0%
ATTTCAAGGTCAGGGGTCAA+GGG + chr1_3:49809558-49809577 None:intergenic 45.0%
AAAAACTCCCATGCACATGC+CGG - chr1_3:49809781-49809800 Msa0122930:intron 45.0%
ATGATAACCGGCATGTGCAT+GGG + chr1_3:49809791-49809810 None:intergenic 45.0%
CAAATGGCATGGCTATCTTC+AGG - chr1_3:49809900-49809919 Msa0122930:intron 45.0%
GTATATAATGCGGACTCCAC+GGG - chr1_3:49810066-49810085 Msa0122930:intron 45.0%
GAGCGATACTCTGATGCTAA+TGG - chr1_3:49810115-49810134 Msa0122930:intron 45.0%
CACCCACAAATAAGCTCAGT+AGG + chr1_3:49810400-49810419 None:intergenic 45.0%
ATCTCCCTAGCTAATAGAGG+AGG - chr1_3:49810447-49810466 Msa0122930:intron 45.0%
TTTGAGTACTAGACCCTGCT+AGG - chr1_3:49810528-49810547 Msa0122930:five_prime_UTR 45.0%
!! ATCCATTGGTGTTGCTGACA+TGG + chr1_3:49808705-49808724 None:intergenic 45.0%
TTTGTACCTGAGTATGAGCG+TGG + chr1_3:49808955-49808974 None:intergenic 45.0%
CATCATACATACCATCAGGG+TGG + chr1_3:49809326-49809345 None:intergenic 45.0%
ATTTCAAGGTCAGGGGTCAA+GGG + chr1_3:49809558-49809577 None:intergenic 45.0%
AAAAACTCCCATGCACATGC+CGG - chr1_3:49809781-49809800 Msa0122930:intron 45.0%
ATGATAACCGGCATGTGCAT+GGG + chr1_3:49809791-49809810 None:intergenic 45.0%
CAAATGGCATGGCTATCTTC+AGG - chr1_3:49809900-49809919 Msa0122930:intron 45.0%
GTATATAATGCGGACTCCAC+GGG - chr1_3:49810066-49810085 Msa0122930:intron 45.0%
GAGCGATACTCTGATGCTAA+TGG - chr1_3:49810115-49810134 Msa0122930:intron 45.0%
CACCCACAAATAAGCTCAGT+AGG + chr1_3:49810400-49810419 None:intergenic 45.0%
ATCTCCCTAGCTAATAGAGG+AGG - chr1_3:49810447-49810466 Msa0122930:intron 45.0%
TTTGAGTACTAGACCCTGCT+AGG - chr1_3:49810528-49810547 Msa0122930:five_prime_UTR 45.0%
TGCCATGTCAGCAACACCAA+TGG - chr1_3:49808700-49808719 Msa0122930:three_prime_UTR 50.0%
GATTTCAAGGTCAGGGGTCA+AGG + chr1_3:49809559-49809578 None:intergenic 50.0%
CATGATAACCGGCATGTGCA+TGG + chr1_3:49809792-49809811 None:intergenic 50.0%
! GCACATGCCGGTTATCATGA+TGG - chr1_3:49809793-49809812 Msa0122930:intron 50.0%
! CATGCCGGTTATCATGATGG+CGG - chr1_3:49809796-49809815 Msa0122930:intron 50.0%
! ATGCCGGTTATCATGATGGC+GGG - chr1_3:49809797-49809816 Msa0122930:intron 50.0%
TTCCCCGCCATCATGATAAC+CGG + chr1_3:49809803-49809822 None:intergenic 50.0%
GGAGAAGTAGGCGACATTAC+TGG - chr1_3:49809953-49809972 Msa0122930:intron 50.0%
TTTGTCAACGGAAAGCCCTC+AGG - chr1_3:49810031-49810050 Msa0122930:intron 50.0%
AGACCCTGCTAGGATCCAAA+AGG - chr1_3:49810538-49810557 Msa0122930:five_prime_UTR 50.0%
GACCCTGCTAGGATCCAAAA+GGG - chr1_3:49810539-49810558 Msa0122930:five_prime_UTR 50.0%
! GTCCCTTTTGGATCCTAGCA+GGG + chr1_3:49810544-49810563 None:intergenic 50.0%
! AGTCCCTTTTGGATCCTAGC+AGG + chr1_3:49810545-49810564 None:intergenic 50.0%
TGCCATGTCAGCAACACCAA+TGG - chr1_3:49808700-49808719 Msa0122930:three_prime_UTR 50.0%
GATTTCAAGGTCAGGGGTCA+AGG + chr1_3:49809559-49809578 None:intergenic 50.0%
CATGATAACCGGCATGTGCA+TGG + chr1_3:49809792-49809811 None:intergenic 50.0%
! GCACATGCCGGTTATCATGA+TGG - chr1_3:49809793-49809812 Msa0122930:intron 50.0%
! CATGCCGGTTATCATGATGG+CGG - chr1_3:49809796-49809815 Msa0122930:intron 50.0%
! ATGCCGGTTATCATGATGGC+GGG - chr1_3:49809797-49809816 Msa0122930:intron 50.0%
TTCCCCGCCATCATGATAAC+CGG + chr1_3:49809803-49809822 None:intergenic 50.0%
GGAGAAGTAGGCGACATTAC+TGG - chr1_3:49809953-49809972 Msa0122930:intron 50.0%
TTTGTCAACGGAAAGCCCTC+AGG - chr1_3:49810031-49810050 Msa0122930:intron 50.0%
AGACCCTGCTAGGATCCAAA+AGG - chr1_3:49810538-49810557 Msa0122930:five_prime_UTR 50.0%
GACCCTGCTAGGATCCAAAA+GGG - chr1_3:49810539-49810558 Msa0122930:five_prime_UTR 50.0%
! GTCCCTTTTGGATCCTAGCA+GGG + chr1_3:49810544-49810563 None:intergenic 50.0%
! AGTCCCTTTTGGATCCTAGC+AGG + chr1_3:49810545-49810564 None:intergenic 50.0%
CAGAAGCCACGCTCATACTC+AGG - chr1_3:49808946-49808965 Msa0122930:three_prime_UTR 55.0%
! TGCCGGTTATCATGATGGCG+GGG - chr1_3:49809798-49809817 Msa0122930:intron 55.0%
ATGAACCTATCCCAGTCCCG+TGG + chr1_3:49810085-49810104 None:intergenic 55.0%
CAGAAGCCACGCTCATACTC+AGG - chr1_3:49808946-49808965 Msa0122930:three_prime_UTR 55.0%
! TGCCGGTTATCATGATGGCG+GGG - chr1_3:49809798-49809817 Msa0122930:intron 55.0%
ATGAACCTATCCCAGTCCCG+TGG + chr1_3:49810085-49810104 None:intergenic 55.0%
TAATGCGGACTCCACGGGAC+TGG - chr1_3:49810071-49810090 Msa0122930:intron 60.0%
AATGCGGACTCCACGGGACT+GGG - chr1_3:49810072-49810091 Msa0122930:intron 60.0%
TAATGCGGACTCCACGGGAC+TGG - chr1_3:49810071-49810090 Msa0122930:intron 60.0%
AATGCGGACTCCACGGGACT+GGG - chr1_3:49810072-49810091 Msa0122930:intron 60.0%
GGACTCCACGGGACTGGGAT+AGG - chr1_3:49810077-49810096 Msa0122930:intron 65.0%
GGACTCCACGGGACTGGGAT+AGG - chr1_3:49810077-49810096 Msa0122930:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49808672 49810744 49808672 ID=Msa0122930;Name=Msa0122930
chr1_3 mRNA 49808672 49810744 49808672 ID=Msa0122930-mRNA-1;Parent=Msa0122930;Name=Msa0122930-mRNA-1;_AED=0.15;_eAED=0.15;_QI=223|1|1|1|1|1|2|585|182
chr1_3 exon 49808672 49809732 49808672 ID=Msa0122930-mRNA-1:exon:15200;Parent=Msa0122930-mRNA-1
chr1_3 exon 49810449 49810744 49810449 ID=Msa0122930-mRNA-1:exon:15199;Parent=Msa0122930-mRNA-1
chr1_3 five_prime_UTR 49810522 49810744 49810522 ID=Msa0122930-mRNA-1:five_prime_utr;Parent=Msa0122930-mRNA-1
chr1_3 CDS 49810449 49810521 49810449 ID=Msa0122930-mRNA-1:cds;Parent=Msa0122930-mRNA-1
chr1_3 CDS 49809257 49809732 49809257 ID=Msa0122930-mRNA-1:cds;Parent=Msa0122930-mRNA-1
chr1_3 three_prime_UTR 49808672 49809256 49808672 ID=Msa0122930-mRNA-1:three_prime_utr;Parent=Msa0122930-mRNA-1
Gene Sequence

>Msa0122930

ATGGCAACTATGCACTCTCTTGCATTCTCCTCTCCACTCTACAACTCAATTCAGAAGCCACGCTCATACTCAGCCACTTCTTTAATTATCCATGGAAGTTTGAACTTAAATTCCTCATTCAATGGTCAACATTTGCATGTGCCAAGTTTGAGGTTACCGATGATTACTCAAAAAACTCCCATGCACATGCCGGTTATCATGATGGCGGGGAAGCCCAAAATTCAATTCATTCAAGGAACTGATGAACTGACAATACCTGATGTGAAGCTGACAAAATCAAAGGATGGAACAAATGGCATGGCTATCTTCAGGTTTGATCAACCCTCAGTTTTTGATTCTTCTGGAGAAGTAGGCGACATTACTGGTTTTTATATGATTGATGAGGAAGGAGTCCTTCAATCTGTTGATGTAAATGCTAAATTTGTCAACGGAAAGCCCTCAGGAATTGAAGCCAAGTATATAATGCGGACTCCACGGGACTGGGATAGGTTCATGAGATTCATGGAGCGATACTCTGATGCTAATGGTTTGCAATTCATAAAATATTGA

Protein sequence

>Msa0122930

MATMHSLAFSSPLYNSIQKPRSYSATSLIIHGSLNLNSSFNGQHLHVPSLRLPMITQKTPMHMPVIMMAGKPKIQFIQGTDELTIPDVKLTKSKDGTNGMAIFRFDQPSVFDSSGEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIKY*