AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0784780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784780 MtrunA17_Chr5g0436831 90.116 516 12 2 1 479 1 514 0.0 857
Msa0784780 MtrunA17_Chr7g0253961 28.000 525 306 12 5 466 10 525 5.53e-44 162
Msa0784780 MtrunA17_Chr4g0003211 28.090 356 228 11 133 466 233 582 4.97e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784780 AT5G05740.3 58.824 527 148 9 1 471 1 514 0.0 564
Msa0784780 AT5G05740.2 58.679 530 147 10 1 471 1 517 0.0 561
Msa0784780 AT5G05740.1 74.648 355 87 1 117 471 195 546 0.0 535
Msa0784780 AT5G35220.1 27.255 521 296 15 26 466 14 531 6.03e-40 151
Msa0784780 AT1G17870.1 26.536 358 231 10 133 466 203 552 1.95e-15 79.3
Msa0784780 AT5G35210.1 37.607 117 70 1 275 388 1545 1661 7.00e-15 78.2

Find 139 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATACCCTTTCCCGTTTA+TGG 0.060368 5_2:-69443520 Msa0784780:CDS
CACACTGAACAACTGGAATT+TGG 0.151179 5_2:+69443272 None:intergenic
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_2:-69445610 Msa0784780:CDS
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_2:+69446637 None:intergenic
AAATCTTGTATTGCTAAAAT+TGG 0.182331 5_2:-69443216 Msa0784780:three_prime_UTR
AGGAATGAGAATGAAGAAAA+TGG 0.190261 5_2:+69451803 None:intergenic
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_2:+69446145 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_2:-69446238 Msa0784780:CDS
TCATCAGATAGAGGTGAAAT+TGG 0.254028 5_2:+69443615 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.263113 5_2:+69445298 None:intergenic
CTATCAACCCTCTTGTCATC+TGG 0.272101 5_2:-69445291 Msa0784780:CDS
CATTTGTTATAGGATAAATT+TGG 0.280363 5_2:-69446932 Msa0784780:intron
AATAAATCGGATTGCAAATT+GGG 0.290251 5_2:+69446638 None:intergenic
ACCCTCTTGTCATCTGGGCT+TGG 0.316440 5_2:-69445285 Msa0784780:CDS
GAAACCCTAACGCCATTAAA+AGG 0.319764 5_2:+69451783 None:intergenic
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_2:-69446198 Msa0784780:CDS
AAATGGAGAAACACAATCTT+TGG 0.324342 5_2:-69449818 Msa0784780:CDS
CCCTCTTGTCATCTGGGCTT+GGG 0.332709 5_2:-69445284 Msa0784780:CDS
AACATTTCACACTGAACAAC+TGG 0.336943 5_2:+69443265 None:intergenic
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_2:-69445721 Msa0784780:intron
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_2:-69446698 Msa0784780:CDS
CATCCTCGGGATTGACTAGA+AGG 0.355654 5_2:+69446891 None:intergenic
ATTTATAATTCATTAACAAA+TGG 0.362122 5_2:-69443312 Msa0784780:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_2:+69446845 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_2:-69445643 Msa0784780:CDS
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_2:-69446225 Msa0784780:CDS
TTGTTACTGCACTTATTATC+GGG 0.385893 5_2:-69446197 Msa0784780:CDS
GCAAGGGTTTCATCCATAAA+CGG 0.390798 5_2:+69443507 None:intergenic
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_2:-69445631 Msa0784780:CDS
TATCAACCCTCTTGTCATCT+GGG 0.397366 5_2:-69445290 Msa0784780:CDS
ATAAATTTGGAGATGAATAC+AGG 0.402996 5_2:-69446919 Msa0784780:CDS
GGAATGAGAATGAAGAAAAT+GGG 0.406041 5_2:+69451804 None:intergenic
CTTGTCATCTGGGCTTGGGC+AGG 0.406606 5_2:-69445280 Msa0784780:CDS
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_2:-69445655 Msa0784780:CDS
TGATACCTTTCTTCCCCATA+TGG 0.407032 5_2:+69445192 None:intergenic
TTTATAATTCATTAACAAAT+GGG 0.409451 5_2:-69443311 Msa0784780:three_prime_UTR
TGAAGGTAGTGAGAGATTCA+TGG 0.410422 5_2:+69451723 None:intergenic
TTTAGCTGTTCTGCATCTAC+AGG 0.415775 5_2:+69449766 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_2:+69445624 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_2:-69445632 Msa0784780:CDS
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_2:-69443668 Msa0784780:CDS
CAAGGGTTTCATCCATAAAC+GGG 0.432625 5_2:+69443508 None:intergenic
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_2:-69443726 Msa0784780:CDS
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_2:+69445631 None:intergenic
TCCAGCGGGAATACTGTTGA+TGG 0.441942 5_2:+69445243 None:intergenic
ACACTCTGGCAACATCACTA+TGG 0.443383 5_2:-69443455 Msa0784780:three_prime_UTR
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_2:-69446119 Msa0784780:CDS
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_2:-69446115 Msa0784780:intron
TGAATTATAAATTACAAAAG+TGG 0.464246 5_2:+69443323 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_2:+69446863 None:intergenic
TACAAATCAAAATGATGTGC+AGG 0.470961 5_2:-69449725 Msa0784780:intron
TGTTCTGCATCTACAGGTGG+AGG 0.473670 5_2:+69449772 None:intergenic
TCCATAAACGGGAAAGGGTA+TGG 0.473818 5_2:+69443519 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_2:-69446144 Msa0784780:CDS
TCATTTCTAGCCGGCGGCAT+TGG 0.474891 5_2:-69445526 Msa0784780:intron
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_2:-69446713 Msa0784780:intron
CTAGGGTGGAGTGCTATTCA+AGG 0.477217 5_2:-69447096 Msa0784780:intron
AAGTAAGTACGAGTTGTCTC+TGG 0.481786 5_2:+69446827 None:intergenic
TACTGTTGATGGCATTGATA+AGG 0.481843 5_2:+69445254 None:intergenic
GCCACTGGCTTATCATCCTC+GGG 0.481990 5_2:+69446878 None:intergenic
CTTCTTCTTCTTCCTGTAGG+AGG 0.484021 5_2:+69451583 None:intergenic
TCAGTTATTTCATCAGATAG+AGG 0.484865 5_2:+69443606 None:intergenic
ATTATCGGGGTACACGAACT+TGG 0.489213 5_2:-69446183 Msa0784780:CDS
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_2:+69446117 None:intergenic
ATTCCCGCTGGAGAAATTGA+TGG 0.493577 5_2:-69445232 Msa0784780:CDS
GAGAGGAACGACGCGGAAAG+TGG 0.493739 5_2:+69451696 None:intergenic
GAATTACGAAAACGATTAGA+AGG 0.496921 5_2:+69451631 None:intergenic
GCCAGTGGATCACCTCTGCC+AGG 0.499435 5_2:-69447425 Msa0784780:CDS
GGCCACTGGCTTATCATCCT+CGG 0.500169 5_2:+69446877 None:intergenic
CTTATATTCTTCTTGCAAAG+AGG 0.500793 5_2:-69443639 Msa0784780:CDS
GATGACAAGTATGTTGCTCT+TGG 0.507660 5_2:-69443579 Msa0784780:CDS
AGAGCAACATACTTGTCATC+AGG 0.510930 5_2:+69443582 None:intergenic
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_2:+69446199 None:intergenic
CTTGCTAACGTTCTCAAGGA+AGG 0.524482 5_2:-69445325 Msa0784780:CDS
TTAAGAACTGAAGTTGAGGT+AGG 0.527451 5_2:+69451834 None:intergenic
CCTCCATCAATTTCTCCAGC+GGG 0.528767 5_2:+69445229 None:intergenic
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_2:-69446234 Msa0784780:CDS
TTTCATCCATAAACGGGAAA+GGG 0.532666 5_2:+69443514 None:intergenic
TATCATACAACCTGCCAGCT+AGG 0.533569 5_2:+69446105 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_2:-69445580 Msa0784780:CDS
CAATGTATCAAAACATACCC+TGG 0.536592 5_2:-69443385 Msa0784780:three_prime_UTR
CAAGAAGTGCAGTGGGAGAG+AGG 0.540257 5_2:+69451679 None:intergenic
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_2:+69446207 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_2:+69446658 None:intergenic
TTGAAGTTGAATCCTCCTAC+AGG 0.547540 5_2:-69451595 Msa0784780:CDS
GAATTATAAATTACAAAAGT+GGG 0.552588 5_2:+69443324 None:intergenic
TTTGAAACTCAGTATACGGT+AGG 0.552926 5_2:-69443413 Msa0784780:three_prime_UTR
GTTTCTTGCTAACGTTCTCA+AGG 0.553899 5_2:-69445329 Msa0784780:CDS
AGCTGTTCTGCATCTACAGG+TGG 0.557660 5_2:+69449769 None:intergenic
CCCTCCATCAATTTCTCCAG+CGG 0.559231 5_2:+69445228 None:intergenic
TGGAGAAACACAATCTTTGG+AGG 0.560871 5_2:-69449815 Msa0784780:CDS
ATCACCTCTGCCAGGTGTGA+AGG 0.562627 5_2:-69447417 Msa0784780:intron
ACCTGGCAGAGGTGATCCAC+TGG 0.563174 5_2:+69447424 None:intergenic
GTTTCATCCATAAACGGGAA+AGG 0.563853 5_2:+69443513 None:intergenic
GAAGTTAAGAACTGAAGTTG+AGG 0.566189 5_2:+69451830 None:intergenic
GCCATCAACAGTATTCCCGC+TGG 0.575199 5_2:-69445244 Msa0784780:CDS
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_2:+69446118 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_2:+69445577 None:intergenic
AATATAATCACCTTCACACC+TGG 0.583486 5_2:+69447407 None:intergenic
GGAACGACGCGGAAAGTGGA+AGG 0.588695 5_2:+69451700 None:intergenic
CACGAGTCATTTCTAGCCGG+CGG 0.588757 5_2:-69445532 Msa0784780:CDS
TGTTACTGCACTTATTATCG+GGG 0.591294 5_2:-69446196 Msa0784780:CDS
ATCACCTTCACACCTGGCAG+AGG 0.594663 5_2:+69447413 None:intergenic
AAGTTGAGGTAGGAAGAAGA+AGG 0.595955 5_2:+69451844 None:intergenic
ACAACACCAATACCGTCACT+TGG 0.597252 5_2:+69445574 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_2:+69446200 None:intergenic
ACTGTTTCTAGAAACTTGCA+AGG 0.605257 5_2:+69443490 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_2:+69446139 None:intergenic
GCCCAAGCCCAGATGACAAG+AGG 0.612324 5_2:+69445283 None:intergenic
TTGAAAGCAAGAAGTGCAGT+GGG 0.613507 5_2:+69451672 None:intergenic
CCCGCTGGAGAAATTGATGG+AGG 0.614785 5_2:-69445229 Msa0784780:CDS
ATATAGCTTACCAATGCCGC+CGG 0.616022 5_2:+69445516 None:intergenic
TTTCACGAGTCATTTCTAGC+CGG 0.617627 5_2:-69445535 Msa0784780:CDS
CCGCTGGAGAAATTGATGGA+GGG 0.622971 5_2:-69445228 Msa0784780:CDS
CTGTTTCTAGAAACTTGCAA+GGG 0.625123 5_2:+69443491 None:intergenic
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_2:-69443667 Msa0784780:CDS
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_2:+69446211 None:intergenic
CCCAAGCCCAGATGACAAGA+GGG 0.633593 5_2:+69445284 None:intergenic
TAGGGTGGAGTGCTATTCAA+GGG 0.635501 5_2:-69447095 Msa0784780:CDS
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_2:-69445586 Msa0784780:CDS
GACGCAGCACCAAACCACTC+AGG 0.637018 5_2:+69446704 None:intergenic
GTGGCCACATGCTTACACTC+TGG 0.648274 5_2:-69443469 Msa0784780:three_prime_UTR
GTTCTGCATCTACAGGTGGA+GGG 0.651010 5_2:+69449773 None:intergenic
TGTAGTGTTAATGAGTCTGA+TGG 0.652732 5_2:-69451547 Msa0784780:CDS
ATTGAAAGCAAGAAGTGCAG+TGG 0.654752 5_2:+69451671 None:intergenic
TGGAGGGTTACTTTGCTCAG+AGG 0.654797 5_2:+69449789 None:intergenic
TTGCAAGTTTCTAGAAACAG+TGG 0.658448 5_2:-69443488 Msa0784780:exon
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_2:+69446639 None:intergenic
ACGCGGAAAGTGGAAGGTGA+AGG 0.665132 5_2:+69451706 None:intergenic
CTATTCAAGGGAAACCTGCG+AGG 0.669260 5_2:-69447083 Msa0784780:CDS
TCCCGAGGATGATAAGCCAG+TGG 0.675188 5_2:-69446879 Msa0784780:CDS
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_2:+69446856 None:intergenic
TTTCCTTCTAGTCAATCCCG+AGG 0.685043 5_2:-69446894 Msa0784780:CDS
AAGAAGAAGGAAGTGACGCG+AGG 0.687574 5_2:+69451857 None:intergenic
GATAACATAGAAGTTGCCAG+TGG 0.714256 5_2:-69447440 Msa0784780:CDS
TATTCAAGGGAAACCTGCGA+GGG 0.734245 5_2:-69447082 Msa0784780:CDS
GTTGCCAGAGTGTAAGCATG+TGG 0.740124 5_2:+69443465 None:intergenic
GTCTGATGGTGATAACGACG+AGG 0.764389 5_2:-69451533 Msa0784780:intron
AGTGGGAGAGAGGAACGACG+CGG 0.781394 5_2:+69451689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTATAACATTTTTT+TGG - chr5_2:69444248-69444267 Msa0784780:intron 10.0%
!! TATATTCTTTAACAATATAT+TGG - chr5_2:69444622-69444641 Msa0784780:intron 10.0%
!!! GAAAAACTTTTTATTTTTAT+AGG - chr5_2:69445043-69445062 Msa0784780:intron 10.0%
!!! AATAGTTTATATTTTATTGA+AGG + chr5_2:69449153-69449172 None:intergenic 10.0%
!! ATTTATAATTCATTAACAAA+TGG - chr5_2:69451784-69451803 Msa0784780:five_prime_UTR 10.0%
!! TTTATAATTCATTAACAAAT+GGG - chr5_2:69451785-69451804 Msa0784780:five_prime_UTR 10.0%
!!! ACATTAATGTACTTTTATTT+TGG - chr5_2:69444058-69444077 Msa0784780:intron 15.0%
!! TAAAACCAAAAAACTATAAT+CGG - chr5_2:69444456-69444475 Msa0784780:intron 15.0%
!! AAAATAATGATATCTTAAGT+TGG - chr5_2:69444820-69444839 Msa0784780:intron 15.0%
!! TTTATTTATCGTAGAATAAT+AGG + chr5_2:69446058-69446077 None:intergenic 15.0%
!! ATATAACACAAAAAAAATTG+TGG + chr5_2:69447075-69447094 None:intergenic 15.0%
!! AAATTAAATAGAGGAAATAT+AGG + chr5_2:69447930-69447949 None:intergenic 15.0%
!! TAAGAAATGAAACATAAATA+TGG + chr5_2:69448087-69448106 None:intergenic 15.0%
!!! TACAAAATTATTGATCTTTT+AGG - chr5_2:69448651-69448670 Msa0784780:intron 15.0%
!! TTTACATGATATATATTAGA+TGG + chr5_2:69449118-69449137 None:intergenic 15.0%
!! ATAAAATATAAACTATTCAG+AGG - chr5_2:69449156-69449175 Msa0784780:intron 15.0%
!! TTCAAATTATCATTAAACTT+TGG + chr5_2:69450026-69450045 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG - chr5_2:69451162-69451181 Msa0784780:intron 15.0%
!! GAATTATAAATTACAAAAGT+GGG + chr5_2:69451775-69451794 None:intergenic 15.0%
!! TGAATTATAAATTACAAAAG+TGG + chr5_2:69451776-69451795 None:intergenic 15.0%
!! TCTCTTTGTTAAGTAATTAT+TGG - chr5_2:69443716-69443735 Msa0784780:CDS 20.0%
!! GTATATTCATTAATCATCTA+CGG + chr5_2:69444017-69444036 None:intergenic 20.0%
!!! TCATCAATGTAATTTTGTTA+AGG - chr5_2:69444205-69444224 Msa0784780:intron 20.0%
!!! TAACAATTTTTGAATTTGCA+AGG - chr5_2:69444402-69444421 Msa0784780:intron 20.0%
!! TTAAAGAATCATTTCTCATT+TGG - chr5_2:69444697-69444716 Msa0784780:intron 20.0%
!!! AAGAATAATATGTTGCTATT+TGG + chr5_2:69445090-69445109 None:intergenic 20.0%
!! GTTTAAAAATTGTATTGTCA+AGG + chr5_2:69445233-69445252 None:intergenic 20.0%
!!! TACAATTTTTAAACTTACGT+AGG - chr5_2:69445239-69445258 Msa0784780:CDS 20.0%
!! AAAAATAATTACTATGTTCC+TGG - chr5_2:69445523-69445542 Msa0784780:intron 20.0%
!! AGAATCAAAATAATAATTCC+AGG + chr5_2:69445544-69445563 None:intergenic 20.0%
!! AGACAAAAATTTACTTGATT+TGG + chr5_2:69445949-69445968 None:intergenic 20.0%
!! TTAGAACTATTAAATTACAG+AGG - chr5_2:69446106-69446125 Msa0784780:intron 20.0%
!! GAGAAGAAAAATATTTAGAA+GGG - chr5_2:69446456-69446475 Msa0784780:intron 20.0%
!!! AAGATTGGAAATTTTAATTG+AGG - chr5_2:69446546-69446565 Msa0784780:intron 20.0%
!!! AGATTGGAAATTTTAATTGA+GGG - chr5_2:69446547-69446566 Msa0784780:intron 20.0%
!! TTATGTTAGGAATTTCAAAT+CGG + chr5_2:69446590-69446609 None:intergenic 20.0%
!!! ATAATAAATTGCTATGCTTT+TGG - chr5_2:69446633-69446652 Msa0784780:intron 20.0%
!!! TAATAAATTGCTATGCTTTT+GGG - chr5_2:69446634-69446653 Msa0784780:intron 20.0%
!!! AAGAAGTTCAAAATTTTCAA+CGG - chr5_2:69446729-69446748 Msa0784780:intron 20.0%
!! AAGTGTAACTAACAAAAATT+AGG + chr5_2:69447408-69447427 None:intergenic 20.0%
!! TGAGATAATCTTTATCAATT+TGG + chr5_2:69447482-69447501 None:intergenic 20.0%
!!! AAGATTGTAATTTTGGAAAA+TGG + chr5_2:69447516-69447535 None:intergenic 20.0%
!!! TTTTATTTTTCTGTTCATGA+TGG + chr5_2:69447541-69447560 None:intergenic 20.0%
!! ACATAAGAGATATGAAAAAA+GGG + chr5_2:69447752-69447771 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG - chr5_2:69448164-69448183 Msa0784780:intron 20.0%
!! TGGAACATCAATAATATATT+TGG + chr5_2:69448828-69448847 None:intergenic 20.0%
!! GATGCATATAATAAACTTTA+GGG - chr5_2:69449178-69449197 Msa0784780:intron 20.0%
!! AGATTCAAATTGACAAAATT+TGG - chr5_2:69449257-69449276 Msa0784780:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG - chr5_2:69449355-69449374 Msa0784780:intron 20.0%
!!! TACAGTTTATTGTTATTACT+TGG - chr5_2:69450482-69450501 Msa0784780:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG + chr5_2:69451054-69451073 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG + chr5_2:69451058-69451077 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG - chr5_2:69451056-69451075 Msa0784780:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG - chr5_2:69451059-69451078 Msa0784780:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG - chr5_2:69451178-69451197 Msa0784780:intron 20.0%
!!! TTTTTTTGAAACTCAGTATA+CGG - chr5_2:69451679-69451698 Msa0784780:CDS 20.0%
!! AAATCTTGTATTGCTAAAAT+TGG - chr5_2:69451880-69451899 Msa0784780:five_prime_UTR 20.0%
!! TTCATTCTCATTCCTTTTAA+TGG - chr5_2:69443301-69443320 Msa0784780:three_prime_UTR 25.0%
!!! GAAGTTTTATACACTAAGTA+AGG - chr5_2:69443631-69443650 Msa0784780:CDS 25.0%
! ACAGAAATTACAAGACTATT+TGG - chr5_2:69443926-69443945 Msa0784780:intron 25.0%
!!! TTTATTTTGGTAAATTAGCC+TGG - chr5_2:69444071-69444090 Msa0784780:intron 25.0%
!!! TCTCGATAAGTTTTTTGTTT+GGG - chr5_2:69444277-69444296 Msa0784780:intron 25.0%
!! ATCATTTCTCATTTGGATTT+TGG - chr5_2:69444704-69444723 Msa0784780:intron 25.0%
!!! ATGATATCTTAAGTTGGATA+TGG - chr5_2:69444826-69444845 Msa0784780:intron 25.0%
!!! TGATATCTTAAGTTGGATAT+GGG - chr5_2:69444827-69444846 Msa0784780:intron 25.0%
! TAGCAACATATTATTCTTAG+TGG - chr5_2:69445092-69445111 Msa0784780:intron 25.0%
!! GAAAAGGTATGAAAAAACAA+AGG + chr5_2:69445211-69445230 None:intergenic 25.0%
! AAATTGTATTGTCAAGGAAA+AGG + chr5_2:69445227-69445246 None:intergenic 25.0%
! CTCGACTATTATATTCAATA+TGG - chr5_2:69445399-69445418 Msa0784780:intron 25.0%
! TATGAAAACTTTGTTGACAT+AGG + chr5_2:69445434-69445453 None:intergenic 25.0%
!! GATGAATTTTCTTAGAGTTT+AGG - chr5_2:69445592-69445611 Msa0784780:CDS 25.0%
!!! ATTTCTTTTAACTCTTGAGT+TGG - chr5_2:69445801-69445820 Msa0784780:intron 25.0%
!!! TTTCTTTTAACTCTTGAGTT+GGG - chr5_2:69445802-69445821 Msa0784780:intron 25.0%
!! TGAGATATTGAATAGTTTGT+TGG - chr5_2:69445894-69445913 Msa0784780:intron 25.0%
! CGAGAAGAAAAATATTTAGA+AGG - chr5_2:69446455-69446474 Msa0784780:intron 25.0%
! CATAGCAATTTATTATGCAT+TGG + chr5_2:69446629-69446648 None:intergenic 25.0%
!! AATAAATTGCTATGCTTTTG+GGG - chr5_2:69446635-69446654 Msa0784780:intron 25.0%
!! AAATAATGCCACTTATTCAT+TGG - chr5_2:69446771-69446790 Msa0784780:intron 25.0%
! GTTACAAGGAATAATAAACA+CGG + chr5_2:69446913-69446932 None:intergenic 25.0%
!! TATTTGAGATGACGAATATT+TGG - chr5_2:69447012-69447031 Msa0784780:intron 25.0%
! TACTCATAATTCATGAAAGA+AGG - chr5_2:69447166-69447185 Msa0784780:intron 25.0%
! ACTCATAATTCATGAAAGAA+GGG - chr5_2:69447167-69447186 Msa0784780:intron 25.0%
!!! ATTAAGCATATTTGTTTCTG+TGG - chr5_2:69447210-69447229 Msa0784780:intron 25.0%
! ACAATGACAAGAACTAATTA+GGG + chr5_2:69447354-69447373 None:intergenic 25.0%
! AACAATGACAAGAACTAATT+AGG + chr5_2:69447355-69447374 None:intergenic 25.0%
!! CTGTTTCAAGGATTTAATTT+AGG + chr5_2:69447383-69447402 None:intergenic 25.0%
! CTAAATTAAATCCTTGAAAC+AGG - chr5_2:69447381-69447400 Msa0784780:intron 25.0%
! AACTTAGTATATAAGTCATC+AGG - chr5_2:69447449-69447468 Msa0784780:CDS 25.0%
!! GATGGAAAAGATTGTAATTT+TGG + chr5_2:69447523-69447542 None:intergenic 25.0%
!! TTTTCTCATCTATTGTACTT+TGG - chr5_2:69447610-69447629 Msa0784780:intron 25.0%
! TTTCTCATCTATTGTACTTT+GGG - chr5_2:69447611-69447630 Msa0784780:intron 25.0%
! ATTGTGATCAAAACAGAATA+CGG - chr5_2:69447634-69447653 Msa0784780:intron 25.0%
! AATATTTCCTACTTTGTTAG+AGG - chr5_2:69447720-69447739 Msa0784780:intron 25.0%
! CACATAAGAGATATGAAAAA+AGG + chr5_2:69447753-69447772 None:intergenic 25.0%
! ATCCTTAAAAATCAAGTGTT+TGG - chr5_2:69447858-69447877 Msa0784780:intron 25.0%
! TGCATATGCAAATTAAATAG+AGG + chr5_2:69447939-69447958 None:intergenic 25.0%
!!! TTTAATTTGCATATGCACAA+AGG - chr5_2:69447942-69447961 Msa0784780:intron 25.0%
!!! ATCTGCATAACATTTGTTAT+AGG - chr5_2:69448154-69448173 Msa0784780:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG - chr5_2:69448177-69448196 Msa0784780:intron 25.0%
! AATAAATCGGATTGCAAATT+GGG + chr5_2:69448461-69448480 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG + chr5_2:69448474-69448493 None:intergenic 25.0%
! TAATACTCCATTATCTCTTA+AGG - chr5_2:69448514-69448533 Msa0784780:intron 25.0%
! AATACTCCATTATCTCTTAA+GGG - chr5_2:69448515-69448534 Msa0784780:intron 25.0%
!! ATTCCTTCAAGTAGATTTTA+AGG - chr5_2:69448601-69448620 Msa0784780:intron 25.0%
! TATCCTTAAAATCTACTTGA+AGG + chr5_2:69448607-69448626 None:intergenic 25.0%
! GTATGATTTATTCCTATGAA+AGG + chr5_2:69448743-69448762 None:intergenic 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG - chr5_2:69448858-69448877 Msa0784780:intron 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG - chr5_2:69448862-69448881 Msa0784780:intron 25.0%
! GGATGCATATAATAAACTTT+AGG - chr5_2:69449177-69449196 Msa0784780:intron 25.0%
!! CATATAATAAACTTTAGGGA+TGG - chr5_2:69449182-69449201 Msa0784780:intron 25.0%
! AACCACCTAATTTAATGTTA+TGG - chr5_2:69449224-69449243 Msa0784780:intron 25.0%
! TTCCATAACATTAAATTAGG+TGG + chr5_2:69449229-69449248 None:intergenic 25.0%
! GCATTCCATAACATTAAATT+AGG + chr5_2:69449232-69449251 None:intergenic 25.0%
!!! TGGTATTGATCAATTTGTTT+TGG - chr5_2:69449295-69449314 Msa0784780:intron 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG - chr5_2:69449358-69449377 Msa0784780:intron 25.0%
!!! TTATTTTGATCTTCACTCTT+AGG - chr5_2:69449940-69449959 Msa0784780:intron 25.0%
!!! AGTATCGATTTTATCTCAAA+TGG + chr5_2:69449983-69450002 None:intergenic 25.0%
! TTAATGTTGTGTATCTAAAG+AGG + chr5_2:69450257-69450276 None:intergenic 25.0%
!! CTTTGAATTGGATTCTAAAA+TGG + chr5_2:69450375-69450394 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG + chr5_2:69451055-69451074 None:intergenic 25.0%
! AGTTATGAGTACTTATGAAA+AGG + chr5_2:69451087-69451106 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG + chr5_2:69451223-69451242 None:intergenic 25.0%
! AAGGAAGACAATGATATAAA+TGG + chr5_2:69451308-69451327 None:intergenic 25.0%
! TTACACGTAAAAAGAAGTAA+AGG + chr5_2:69451327-69451346 None:intergenic 25.0%
GGAATGAGAATGAAGAAAAT+GGG + chr5_2:69443295-69443314 None:intergenic 30.0%
AGGAATGAGAATGAAGAAAA+TGG + chr5_2:69443296-69443315 None:intergenic 30.0%
GAATTACGAAAACGATTAGA+AGG + chr5_2:69443468-69443487 None:intergenic 30.0%
TGAAGTTTGTGAAAATTGTG+CGG - chr5_2:69443675-69443694 Msa0784780:CDS 30.0%
ATTATTGGATTCGTTATGAG+TGG - chr5_2:69443731-69443750 Msa0784780:intron 30.0%
TGTGGAAAAGTGAATAATCT+AGG - chr5_2:69444117-69444136 Msa0784780:intron 30.0%
GTGGAAAAGTGAATAATCTA+GGG - chr5_2:69444118-69444137 Msa0784780:intron 30.0%
!!! GTCTCGATAAGTTTTTTGTT+TGG - chr5_2:69444276-69444295 Msa0784780:intron 30.0%
!!! TTGTTACTTTTAGTCCTTGA+CGG + chr5_2:69444388-69444407 None:intergenic 30.0%
AACCAAAAAACTATAATCGG+AGG - chr5_2:69444459-69444478 Msa0784780:intron 30.0%
ACCAAAAAACTATAATCGGA+GGG - chr5_2:69444460-69444479 Msa0784780:intron 30.0%
TTTGAACACCTGAAAATTTG+TGG + chr5_2:69444537-69444556 None:intergenic 30.0%
AGTTAAACACTTGACAATTG+TGG - chr5_2:69444566-69444585 Msa0784780:intron 30.0%
! TTTTGCAACAACTTTCTATG+TGG + chr5_2:69444659-69444678 None:intergenic 30.0%
ATAAAAGTGATGAGAGAGAA+AGG - chr5_2:69444949-69444968 Msa0784780:intron 30.0%
TATCAGAAGTGATGTTAAGA+AGG - chr5_2:69445021-69445040 Msa0784780:intron 30.0%
TTCACACATTGTAGAAAGAA+TGG - chr5_2:69445165-69445184 Msa0784780:intron 30.0%
! GAGAAAGAAGCACATAAAAA+TGG - chr5_2:69445261-69445280 Msa0784780:CDS 30.0%
AAATGGAGAAACACAATCTT+TGG - chr5_2:69445278-69445297 Msa0784780:CDS 30.0%
TACAAATCAAAATGATGTGC+AGG - chr5_2:69445371-69445390 Msa0784780:intron 30.0%
AATGTCCACTTATTCATTGT+TGG - chr5_2:69445637-69445656 Msa0784780:CDS 30.0%
ATTCTCCAACAATGAATAAG+TGG + chr5_2:69445645-69445664 None:intergenic 30.0%
AGTAGAGATACTTTCAATGT+AGG + chr5_2:69445759-69445778 None:intergenic 30.0%
TTTGAATGGTAACACAACTT+GGG - chr5_2:69445833-69445852 Msa0784780:intron 30.0%
AAGACTTTGATACCACTATT+GGG + chr5_2:69446010-69446029 None:intergenic 30.0%
TAAGACTTTGATACCACTAT+TGG + chr5_2:69446011-69446030 None:intergenic 30.0%
AATCTTGGCAAATGTGTATT+GGG + chr5_2:69446169-69446188 None:intergenic 30.0%
!! TTCTCGTTTTATTCACTTGT+AGG + chr5_2:69446441-69446460 None:intergenic 30.0%
TAGAAGGGAAAACTTTGTTA+AGG - chr5_2:69446471-69446490 Msa0784780:intron 30.0%
AGAAGGGAAAACTTTGTTAA+GGG - chr5_2:69446472-69446491 Msa0784780:intron 30.0%
! TTTTCTGACGAAAAGAAGAT+TGG - chr5_2:69446531-69446550 Msa0784780:intron 30.0%
!!! TTGGAAATTTTAATTGAGGG+TGG - chr5_2:69446550-69446569 Msa0784780:intron 30.0%
! TTTTGAACTTCTTCCAAAGA+TGG + chr5_2:69446722-69446741 None:intergenic 30.0%
TCATATGACCCTTTATATAG+TGG + chr5_2:69446816-69446835 None:intergenic 30.0%
! AGTAGGGTATACGAATTTTT+GGG - chr5_2:69446938-69446957 Msa0784780:intron 30.0%
AAAATCTGCACAACAAAGAA+GGG + chr5_2:69447126-69447145 None:intergenic 30.0%
AAAAATCTGCACAACAAAGA+AGG + chr5_2:69447127-69447146 None:intergenic 30.0%
TGCTTAATTGCAACTGAAAA+GGG + chr5_2:69447198-69447217 None:intergenic 30.0%
ATGCTTAATTGCAACTGAAA+AGG + chr5_2:69447199-69447218 None:intergenic 30.0%
AAAAATTAGGTCCTGTTTCA+AGG + chr5_2:69447395-69447414 None:intergenic 30.0%
AAACTGTGTTCTTAAGAGTA+AGG - chr5_2:69447572-69447591 Msa0784780:intron 30.0%
GTACAATAGATGAGAAAACT+AGG + chr5_2:69447608-69447627 None:intergenic 30.0%
ATGATGTGATAAAATTCCCA+AGG - chr5_2:69447824-69447843 Msa0784780:intron 30.0%
!!! AGGATTTCGATTTTTTCCTT+GGG + chr5_2:69447843-69447862 None:intergenic 30.0%
!!! AAGGATTTCGATTTTTTCCT+TGG + chr5_2:69447844-69447863 None:intergenic 30.0%
! AGCCAAACACTTGATTTTTA+AGG + chr5_2:69447863-69447882 None:intergenic 30.0%
! GTTCAGAAGTTATTTCAACA+TGG + chr5_2:69448129-69448148 None:intergenic 30.0%
TTAGAAAATAGTGATGCTCA+TGG - chr5_2:69448333-69448352 Msa0784780:intron 30.0%
ATAAATCGGATTGCAAATTG+GGG + chr5_2:69448460-69448479 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG + chr5_2:69448462-69448481 None:intergenic 30.0%
GAGTATTAAGTGACAAGAAA+AGG + chr5_2:69448502-69448521 None:intergenic 30.0%
! AATAATTTTGTACCCGAACA+TGG + chr5_2:69448643-69448662 None:intergenic 30.0%
! AGGCTTTGTGTTTATTTAAC+AGG - chr5_2:69448671-69448690 Msa0784780:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG + chr5_2:69448740-69448759 None:intergenic 30.0%
! CATATCATAGATGCATTTTG+AGG - chr5_2:69448797-69448816 Msa0784780:intron 30.0%
GATAATAAGTGCAGTAACAA+GGG + chr5_2:69448899-69448918 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG - chr5_2:69448898-69448917 Msa0784780:intron 30.0%
TTGTTACTGCACTTATTATC+GGG - chr5_2:69448899-69448918 Msa0784780:intron 30.0%
ATTAGGTGGTTTGAAAAAAC+AGG + chr5_2:69449215-69449234 None:intergenic 30.0%
TTTAAGCTTGCATTCATTTG+TGG - chr5_2:69449635-69449654 Msa0784780:intron 30.0%
! GAGAATTTCTTTTGCCATAT+GGG - chr5_2:69449890-69449909 Msa0784780:intron 30.0%
! AGAATTTCTTTTGCCATATG+GGG - chr5_2:69449891-69449910 Msa0784780:intron 30.0%
! AAAAGTGAAACATGATTTGC+CGG - chr5_2:69450091-69450110 Msa0784780:intron 30.0%
TTTCCATCCAAAAAAGAAAC+CGG + chr5_2:69450113-69450132 None:intergenic 30.0%
GTAAGAGTCAAAATACGAAT+CGG - chr5_2:69450157-69450176 Msa0784780:intron 30.0%
CAAAATAATAGCTCCAGATT+TGG - chr5_2:69450313-69450332 Msa0784780:intron 30.0%
!! TGAATTGGATTCTAAAATGG+TGG + chr5_2:69450372-69450391 None:intergenic 30.0%
GCATAATGTCATCTTTGAAT+TGG + chr5_2:69450387-69450406 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG + chr5_2:69450461-69450480 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG - chr5_2:69450459-69450478 Msa0784780:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG + chr5_2:69450779-69450798 None:intergenic 30.0%
TGGAATAACACTCATTAATC+TGG + chr5_2:69450802-69450821 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG + chr5_2:69450902-69450921 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG - chr5_2:69451100-69451119 Msa0784780:intron 30.0%
CTAACTTAAGTCTATTTCAC+AGG - chr5_2:69451351-69451370 Msa0784780:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG - chr5_2:69451428-69451447 Msa0784780:intron 30.0%
TAATGATGTAGCTTTCTACT+GGG - chr5_2:69451429-69451448 Msa0784780:intron 30.0%
CTTATATTCTTCTTGCAAAG+AGG - chr5_2:69451457-69451476 Msa0784780:intron 30.0%
! TCAGTTATTTCATCAGATAG+AGG + chr5_2:69451493-69451512 None:intergenic 30.0%
TTAAGAACTGAAGTTGAGGT+AGG + chr5_2:69443265-69443284 None:intergenic 35.0%
GAAGTTAAGAACTGAAGTTG+AGG + chr5_2:69443269-69443288 None:intergenic 35.0%
! TCATTCCTTTTAATGGCGTT+AGG - chr5_2:69443308-69443327 Msa0784780:three_prime_UTR 35.0%
! CATTCCTTTTAATGGCGTTA+GGG - chr5_2:69443309-69443328 Msa0784780:three_prime_UTR 35.0%
! GAGATTCATGGTTTTCGATT+TGG + chr5_2:69443364-69443383 None:intergenic 35.0%
TGTAGTGTTAATGAGTCTGA+TGG - chr5_2:69443549-69443568 Msa0784780:CDS 35.0%
AAGACAATGACACTTGTGAT+TGG + chr5_2:69443886-69443905 None:intergenic 35.0%
TGCACAATATGTAGATGTCA+GGG + chr5_2:69444335-69444354 None:intergenic 35.0%
TTGCACAATATGTAGATGTC+AGG + chr5_2:69444336-69444355 None:intergenic 35.0%
CATCTACATATTGTGCAATG+TGG - chr5_2:69444338-69444357 Msa0784780:intron 35.0%
!!! TCCCTCCGATTATAGTTTTT+TGG + chr5_2:69444464-69444483 None:intergenic 35.0%
CCAAATTCGTGGTTAACAAA+AGG + chr5_2:69444504-69444523 None:intergenic 35.0%
! CCTTTTGTTAACCACGAATT+TGG - chr5_2:69444501-69444520 Msa0784780:intron 35.0%
! CTTGAAGAATTTAAGATCCC+AGG - chr5_2:69444763-69444782 Msa0784780:intron 35.0%
!! TTAAGTTGGATATGGGTTGT+GGG - chr5_2:69444834-69444853 Msa0784780:intron 35.0%
AAGAAAGAAAGTGAGAGAAG+TGG - chr5_2:69444880-69444899 Msa0784780:intron 35.0%
GAAGTGGTAGATGATGTAAT+AGG - chr5_2:69444896-69444915 Msa0784780:intron 35.0%
AGCTCACATTGATATGTAGA+AGG - chr5_2:69445568-69445587 Msa0784780:CDS 35.0%
GCTCACATTGATATGTAGAA+GGG - chr5_2:69445569-69445588 Msa0784780:CDS 35.0%
CTCACATTGATATGTAGAAG+GGG - chr5_2:69445570-69445589 Msa0784780:CDS 35.0%
TTGAGTCAAGAAACCAAGTA+TGG - chr5_2:69445726-69445745 Msa0784780:intron 35.0%
TGAGTCAAGAAACCAAGTAT+GGG - chr5_2:69445727-69445746 Msa0784780:intron 35.0%
GTTTGAATGGTAACACAACT+TGG - chr5_2:69445832-69445851 Msa0784780:intron 35.0%
TTGAATGGTAACACAACTTG+GGG - chr5_2:69445834-69445853 Msa0784780:intron 35.0%
!! AGTTTGTTGGAGTATTTCCA+TGG - chr5_2:69445907-69445926 Msa0784780:intron 35.0%
GGTGATTGTTAAACCAGAAT+TGG - chr5_2:69446127-69446146 Msa0784780:CDS 35.0%
TGTTAAACCAGAATTGGTGA+TGG - chr5_2:69446133-69446152 Msa0784780:CDS 35.0%
! GTTAAACCAGAATTGGTGAT+GGG - chr5_2:69446134-69446153 Msa0784780:CDS 35.0%
CAATCTTGGCAAATGTGTAT+TGG + chr5_2:69446170-69446189 None:intergenic 35.0%
ATACACATTTGCCAAGATTG+AGG - chr5_2:69446170-69446189 Msa0784780:CDS 35.0%
TTCGACACCTTAAAGACTAA+TGG - chr5_2:69446196-69446215 Msa0784780:CDS 35.0%
!! AAACACGCCATTAGTCTTTA+AGG + chr5_2:69446206-69446225 None:intergenic 35.0%
TTAAAGACTAATGGCGTGTT+TGG - chr5_2:69446205-69446224 Msa0784780:CDS 35.0%
TAAAGACTAATGGCGTGTTT+GGG - chr5_2:69446206-69446225 Msa0784780:CDS 35.0%
GTTAGGAAATGGTAACATAC+TGG - chr5_2:69446237-69446256 Msa0784780:CDS 35.0%
TCACTTGAGTAGAAGTTTGA+TGG - chr5_2:69446368-69446387 Msa0784780:intron 35.0%
TGCAAGGTGTATAGTACATA+AGG - chr5_2:69446404-69446423 Msa0784780:intron 35.0%
AAGGTGTATAGTACATAAGG+AGG - chr5_2:69446407-69446426 Msa0784780:intron 35.0%
CTCTCGCTTGAATTTATGTT+AGG + chr5_2:69446603-69446622 None:intergenic 35.0%
TTCTGATACTCATCCATCTT+TGG - chr5_2:69446706-69446725 Msa0784780:CDS 35.0%
CTTTACAGCCAATGAATAAG+TGG + chr5_2:69446782-69446801 None:intergenic 35.0%
TATGACCCTTTATATAGTGG+CGG + chr5_2:69446813-69446832 None:intergenic 35.0%
ATTCCTTGTAACTCTTGAGT+AGG - chr5_2:69446921-69446940 Msa0784780:CDS 35.0%
TTCCTTGTAACTCTTGAGTA+GGG - chr5_2:69446922-69446941 Msa0784780:CDS 35.0%
! GAGTAGGGTATACGAATTTT+TGG - chr5_2:69446937-69446956 Msa0784780:intron 35.0%
! GTAGGGTATACGAATTTTTG+GGG - chr5_2:69446939-69446958 Msa0784780:intron 35.0%
TGAGATGACGAATATTTGGT+TGG - chr5_2:69447016-69447035 Msa0784780:intron 35.0%
CTTAATTGCAACTGAAAAGG+GGG + chr5_2:69447196-69447215 None:intergenic 35.0%
GCTTAATTGCAACTGAAAAG+GGG + chr5_2:69447197-69447216 None:intergenic 35.0%
AATATAATCACCTTCACACC+TGG + chr5_2:69447692-69447711 None:intergenic 35.0%
TCTGGTTGTAAAGTAGTTCT+TGG + chr5_2:69448254-69448273 None:intergenic 35.0%
ACTTAACTCCTTCAGAATTG+TGG - chr5_2:69448288-69448307 Msa0784780:intron 35.0%
ACAATGATCCACAATTCTGA+AGG + chr5_2:69448299-69448318 None:intergenic 35.0%
GCAATACCCTTAAGAGATAA+TGG + chr5_2:69448524-69448543 None:intergenic 35.0%
GTCCTAACAAATACCATGTT+CGG - chr5_2:69448627-69448646 Msa0784780:intron 35.0%
TCCTAACAAATACCATGTTC+GGG - chr5_2:69448628-69448647 Msa0784780:intron 35.0%
AAATCTGTTCCACCTTTCAT+AGG - chr5_2:69448728-69448747 Msa0784780:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG + chr5_2:69448900-69448919 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG - chr5_2:69448900-69448919 Msa0784780:intron 35.0%
!!! TTTTTAGTTGCCCAAAACCT+TGG - chr5_2:69448940-69448959 Msa0784780:intron 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG + chr5_2:69448953-69448972 None:intergenic 35.0%
!! TTTGGTGACATGTACGATTT+TGG - chr5_2:69449275-69449294 Msa0784780:intron 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG - chr5_2:69449388-69449407 Msa0784780:intron 35.0%
! TTTGTTATACCTCCAAGTGA+CGG - chr5_2:69449510-69449529 Msa0784780:intron 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG + chr5_2:69449801-69449820 None:intergenic 35.0%
!! TACTGTTGATGGCATTGATA+AGG + chr5_2:69449845-69449864 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG - chr5_2:69449889-69449908 Msa0784780:intron 35.0%
TTGATCTTCACTCTTAGGTT+TGG - chr5_2:69449945-69449964 Msa0784780:intron 35.0%
TATCAAATGTGATGACTGAG+TGG + chr5_2:69450054-69450073 None:intergenic 35.0%
!!! TGATTTGCCGGTTTCTTTTT+TGG - chr5_2:69450103-69450122 Msa0784780:intron 35.0%
CAAGTGAATGAAACCAAATC+TGG + chr5_2:69450329-69450348 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTT+AGG - chr5_2:69450333-69450352 Msa0784780:intron 35.0%
!! ATTGGATTCTAAAATGGTGG+TGG + chr5_2:69450369-69450388 None:intergenic 35.0%
TTACTTGGATAAACTCTCCA+TGG - chr5_2:69450497-69450516 Msa0784780:intron 35.0%
! TGGTTCTATATAGTCTATGG+CGG + chr5_2:69450776-69450795 None:intergenic 35.0%
AACACTCATTAATCTGGCTA+TGG + chr5_2:69450796-69450815 None:intergenic 35.0%
!!! CTTATTTTTAGCTGCAGGTT+TGG + chr5_2:69450822-69450841 None:intergenic 35.0%
CAAACCTGCAGCTAAAAATA+AGG - chr5_2:69450820-69450839 Msa0784780:intron 35.0%
!!! AAAGCCTTATTTTTAGCTGC+AGG + chr5_2:69450827-69450846 None:intergenic 35.0%
! TGCTGTATTGCTGTCAATTT+TGG - chr5_2:69450857-69450876 Msa0784780:intron 35.0%
TAGGACAAGTTAAGGAAAAG+AGG - chr5_2:69450927-69450946 Msa0784780:intron 35.0%
AAACAAGAGTGAGAGACAAA+GGG + chr5_2:69451007-69451026 None:intergenic 35.0%
AAAACAAGAGTGAGAGACAA+AGG + chr5_2:69451008-69451027 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG - chr5_2:69451103-69451122 Msa0784780:intron 35.0%
CTCGAGAGGATAAAAGAATT+TGG + chr5_2:69451136-69451155 None:intergenic 35.0%
TCATCAGATAGAGGTGAAAT+TGG + chr5_2:69451484-69451503 None:intergenic 35.0%
TTTCATCCATAAACGGGAAA+GGG + chr5_2:69451585-69451604 None:intergenic 35.0%
!! CTGTTTCTAGAAACTTGCAA+GGG + chr5_2:69451608-69451627 None:intergenic 35.0%
!! ACTGTTTCTAGAAACTTGCA+AGG + chr5_2:69451609-69451628 None:intergenic 35.0%
! TTGCAAGTTTCTAGAAACAG+TGG - chr5_2:69451608-69451627 Msa0784780:CDS 35.0%
! TTTGAAACTCAGTATACGGT+AGG - chr5_2:69451683-69451702 Msa0784780:CDS 35.0%
CAATGTATCAAAACATACCC+TGG - chr5_2:69451711-69451730 Msa0784780:CDS 35.0%
! GAAGTTTTGCAAATGAACCA+GGG + chr5_2:69451731-69451750 None:intergenic 35.0%
! TGAAGTTTTGCAAATGAACC+AGG + chr5_2:69451732-69451751 None:intergenic 35.0%
AACATTTCACACTGAACAAC+TGG + chr5_2:69451834-69451853 None:intergenic 35.0%
AAGTTGAGGTAGGAAGAAGA+AGG + chr5_2:69443255-69443274 None:intergenic 40.0%
GAAACCCTAACGCCATTAAA+AGG + chr5_2:69443316-69443335 None:intergenic 40.0%
TGAAGGTAGTGAGAGATTCA+TGG + chr5_2:69443376-69443395 None:intergenic 40.0%
! TTGAAAGCAAGAAGTGCAGT+GGG + chr5_2:69443427-69443446 None:intergenic 40.0%
! ATTGAAAGCAAGAAGTGCAG+TGG + chr5_2:69443428-69443447 None:intergenic 40.0%
TTGAAGTTGAATCCTCCTAC+AGG - chr5_2:69443501-69443520 Msa0784780:CDS 40.0%
CTTCTTCTTCTTCTTCCTGT+AGG + chr5_2:69443519-69443538 None:intergenic 40.0%
CAGGAAGAAGAAGAAGAAGA+CGG - chr5_2:69443520-69443539 Msa0784780:CDS 40.0%
ATTGGATTCGTTATGAGTGG+TGG - chr5_2:69443734-69443753 Msa0784780:intron 40.0%
AGACTCACACACTTTAAGTG+TGG - chr5_2:69444099-69444118 Msa0784780:intron 40.0%
! GCGATCAACCACAAATTTTC+AGG - chr5_2:69444526-69444545 Msa0784780:intron 40.0%
!! CTTAAGTTGGATATGGGTTG+TGG - chr5_2:69444833-69444852 Msa0784780:intron 40.0%
AGAAACAGACACAAAGTGTG+AGG - chr5_2:69444922-69444941 Msa0784780:intron 40.0%
TGGAGAAACACAATCTTTGG+AGG - chr5_2:69445281-69445300 Msa0784780:CDS 40.0%
TTTAGCTGTTCTGCATCTAC+AGG + chr5_2:69445333-69445352 None:intergenic 40.0%
GCAGCTATTTATTGTGTCCA+TGG + chr5_2:69445927-69445946 None:intergenic 40.0%
TCTGCTCTACACTTTCTTTG+TGG - chr5_2:69445966-69445985 Msa0784780:intron 40.0%
CGACAACTCTCAAACAAATG+TGG - chr5_2:69446083-69446102 Msa0784780:intron 40.0%
GTGTCGAATATCCTCAATCT+TGG + chr5_2:69446184-69446203 None:intergenic 40.0%
AAAGACTAATGGCGTGTTTG+GGG - chr5_2:69446207-69446226 Msa0784780:CDS 40.0%
!! GTGTTTGGGGATTTCAAGTT+AGG - chr5_2:69446220-69446239 Msa0784780:CDS 40.0%
!! GGGGATTTCAAGTTAGGAAA+TGG - chr5_2:69446226-69446245 Msa0784780:CDS 40.0%
GGTAACATACTGGATGTTGA+AGG - chr5_2:69446247-69446266 Msa0784780:CDS 40.0%
TGATGCCAACATTGTCTCTT+TGG - chr5_2:69446335-69446354 Msa0784780:intron 40.0%
TCTCTCCAAAGAGACAATGT+TGG + chr5_2:69446343-69446362 None:intergenic 40.0%
TACACCTTGCAAAGCTACTT+TGG + chr5_2:69446395-69446414 None:intergenic 40.0%
!! ATAGTACATAAGGAGGTGCT+TGG - chr5_2:69446414-69446433 Msa0784780:intron 40.0%
ACAACCCGCCACTATATAAA+GGG - chr5_2:69446805-69446824 Msa0784780:intron 40.0%
ATGACCCTTTATATAGTGGC+GGG + chr5_2:69446812-69446831 None:intergenic 40.0%
TGTGTGAGTGGTCATGTATT+AGG - chr5_2:69446871-69446890 Msa0784780:CDS 40.0%
TACCCTACTCAAGAGTTACA+AGG + chr5_2:69446927-69446946 None:intergenic 40.0%
ATTTGGTTGGACTGTTTCCA+TGG - chr5_2:69447029-69447048 Msa0784780:intron 40.0%
TGCTTGATGAAAAATGCTCC+TGG - chr5_2:69447270-69447289 Msa0784780:intron 40.0%
CTCAATGTGAAACTGAAACC+AGG + chr5_2:69447291-69447310 None:intergenic 40.0%
CTGGTTTCAGTTTCACATTG+AGG - chr5_2:69447289-69447308 Msa0784780:intron 40.0%
GATAACATAGAAGTTGCCAG+TGG - chr5_2:69447656-69447675 Msa0784780:intron 40.0%
GAGAATGCCTCTAACAAAGT+AGG + chr5_2:69447730-69447749 None:intergenic 40.0%
GTTAGGGACATATAAAGGAC+AGG + chr5_2:69447789-69447808 None:intergenic 40.0%
AGGCTGTTAGGGACATATAA+AGG + chr5_2:69447794-69447813 None:intergenic 40.0%
ATCACATCATCCAGTTGTTG+AGG + chr5_2:69447814-69447833 None:intergenic 40.0%
AACAAGCCAAGATCCTTATG+AGG - chr5_2:69447898-69447917 Msa0784780:intron 40.0%
ATATAGGCACACACCTCATA+AGG + chr5_2:69447914-69447933 None:intergenic 40.0%
AGTAGTTCTTGGAACGACAA+CGG + chr5_2:69448243-69448262 None:intergenic 40.0%
AAGTAAGTACGAGTTGTCTC+TGG + chr5_2:69448272-69448291 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG - chr5_2:69448378-69448397 Msa0784780:intron 40.0%
! CCACATGACAACGTTTTGTA+GGG + chr5_2:69448546-69448565 None:intergenic 40.0%
! ACCACATGACAACGTTTTGT+AGG + chr5_2:69448547-69448566 None:intergenic 40.0%
ACCCGAACATGGTATTTGTT+AGG + chr5_2:69448632-69448651 None:intergenic 40.0%
CATACAACCTGTCTTTACTC+TGG - chr5_2:69448758-69448777 Msa0784780:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG + chr5_2:69448768-69448787 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG + chr5_2:69448848-69448867 None:intergenic 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG + chr5_2:69448954-69448973 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG - chr5_2:69448952-69448971 Msa0784780:intron 40.0%
AACAGACAAACTCGCACAAT+TGG + chr5_2:69449037-69449056 None:intergenic 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG - chr5_2:69449366-69449385 Msa0784780:intron 40.0%
AACAAGACCCAATGCAAATC+CGG + chr5_2:69449475-69449494 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+CGG - chr5_2:69449561-69449580 Msa0784780:intron 40.0%
GTTTCTTGCTAACGTTCTCA+AGG - chr5_2:69449767-69449786 Msa0784780:CDS 40.0%
TATCAACCCTCTTGTCATCT+GGG - chr5_2:69449806-69449825 Msa0784780:CDS 40.0%
! TTTTGCCATATGGGGAAGAA+AGG - chr5_2:69449899-69449918 Msa0784780:intron 40.0%
TGATACCTTTCTTCCCCATA+TGG + chr5_2:69449907-69449926 None:intergenic 40.0%
ATCTCAAATGGAACAACCGA+TGG + chr5_2:69449971-69449990 None:intergenic 40.0%
!!! TTGCCGGTTTCTTTTTTGGA+TGG - chr5_2:69450107-69450126 Msa0784780:intron 40.0%
AGTTGCTCATAACCTTGTCA+GGG + chr5_2:69450224-69450243 None:intergenic 40.0%
AAGGTTATGAGCAACTCCAT+TGG - chr5_2:69450228-69450247 Msa0784780:intron 40.0%
AGGTTATGAGCAACTCCATT+GGG - chr5_2:69450229-69450248 Msa0784780:intron 40.0%
!! GATTCTAAAATGGTGGTGGA+TGG + chr5_2:69450365-69450384 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG + chr5_2:69450449-69450468 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG + chr5_2:69450450-69450469 None:intergenic 40.0%
! ATATGCATCTGGAATGACCA+TGG + chr5_2:69450517-69450536 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG + chr5_2:69450528-69450547 None:intergenic 40.0%
! TTTGCGTTTTCTCAGTACAC+AGG + chr5_2:69450556-69450575 None:intergenic 40.0%
! ATATGGCTTGCAGAATACCT+CGG + chr5_2:69450885-69450904 None:intergenic 40.0%
CTTGTCCTAGAAGCGAAAAA+TGG + chr5_2:69450916-69450935 None:intergenic 40.0%
!! TTCGCTTCTAGGACAAGTTA+AGG - chr5_2:69450919-69450938 Msa0784780:intron 40.0%
AATCAAGCAAGGAGAACACT+TGG + chr5_2:69450953-69450972 None:intergenic 40.0%
TACAGTTTGCGAATCAAGCA+AGG + chr5_2:69450964-69450983 None:intergenic 40.0%
TCGCAAACTGTACAGACATA+AGG - chr5_2:69450972-69450991 Msa0784780:intron 40.0%
AACAAGAGTGAGAGACAAAG+GGG + chr5_2:69451006-69451025 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG - chr5_2:69451106-69451125 Msa0784780:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG + chr5_2:69451150-69451169 None:intergenic 40.0%
CATGCAGGTACATAATCAAG+AGG + chr5_2:69451208-69451227 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG - chr5_2:69451391-69451410 Msa0784780:intron 40.0%
AGAGCAACATACTTGTCATC+AGG + chr5_2:69451517-69451536 None:intergenic 40.0%
GATGACAAGTATGTTGCTCT+TGG - chr5_2:69451517-69451536 Msa0784780:intron 40.0%
! TGGAGTAACAGTTTTGCTCT+TGG - chr5_2:69451537-69451556 Msa0784780:CDS 40.0%
! GGAGTAACAGTTTTGCTCTT+GGG - chr5_2:69451538-69451557 Msa0784780:CDS 40.0%
GTTTCATCCATAAACGGGAA+AGG + chr5_2:69451586-69451605 None:intergenic 40.0%
CAAGGGTTTCATCCATAAAC+GGG + chr5_2:69451591-69451610 None:intergenic 40.0%
GCAAGGGTTTCATCCATAAA+CGG + chr5_2:69451592-69451611 None:intergenic 40.0%
CACACTGAACAACTGGAATT+TGG + chr5_2:69451827-69451846 None:intergenic 40.0%
CTTCTTCTTCTTCCTGTAGG+AGG + chr5_2:69443516-69443535 None:intergenic 45.0%
! CGTTATGAGTGGTGGCATTT+TGG - chr5_2:69443742-69443761 Msa0784780:intron 45.0%
!! GGTGGCATTTTGGTATAGCA+TGG - chr5_2:69443752-69443771 Msa0784780:intron 45.0%
CAACCTATGTAGCACAGACA+TGG - chr5_2:69443786-69443805 Msa0784780:intron 45.0%
TGTCCATGTCTGTGCTACAT+AGG + chr5_2:69443792-69443811 None:intergenic 45.0%
TGCAAGTACGTTGATACGCA+GGG + chr5_2:69444157-69444176 None:intergenic 45.0%
! CACAACATCATTTGGGACCT+GGG + chr5_2:69444783-69444802 None:intergenic 45.0%
! TCACAACATCATTTGGGACC+TGG + chr5_2:69444784-69444803 None:intergenic 45.0%
AGGTCCCAAATGATGTTGTG+AGG - chr5_2:69444783-69444802 Msa0784780:intron 45.0%
GGTCCCAAATGATGTTGTGA+GGG - chr5_2:69444784-69444803 Msa0784780:intron 45.0%
GTCCCAAATGATGTTGTGAG+GGG - chr5_2:69444785-69444804 Msa0784780:intron 45.0%
CTCCCCTCACAACATCATTT+GGG + chr5_2:69444790-69444809 None:intergenic 45.0%
ACTCCCCTCACAACATCATT+TGG + chr5_2:69444791-69444810 None:intergenic 45.0%
AACAGACACAAAGTGTGAGG+AGG - chr5_2:69444925-69444944 Msa0784780:intron 45.0%
!! TCCAAAAGCGCTATTGCTCA+TGG - chr5_2:69445499-69445518 Msa0784780:intron 45.0%
!! CCAAAAGCGCTATTGCTCAT+GGG - chr5_2:69445500-69445519 Msa0784780:intron 45.0%
TGTAGGTGATCACCCATACT+TGG + chr5_2:69445742-69445761 None:intergenic 45.0%
GTTGGGCACTCAAGTTTGAA+TGG - chr5_2:69445819-69445838 Msa0784780:intron 45.0%
AATGGTAACACAACTTGGGG+TGG - chr5_2:69445837-69445856 Msa0784780:intron 45.0%
ATGGTAACACAACTTGGGGT+GGG - chr5_2:69445838-69445857 Msa0784780:intron 45.0%
TTGCGTGTGTTTCCCAATAG+TGG - chr5_2:69445995-69446014 Msa0784780:intron 45.0%
GTAGAACCCATCACCAATTC+TGG + chr5_2:69446143-69446162 None:intergenic 45.0%
ACATATGAACTGCAGCATCG+TGG + chr5_2:69446297-69446316 None:intergenic 45.0%
TTCATATGTCCCAGGATGCA+AGG - chr5_2:69446308-69446327 Msa0784780:intron 45.0%
! TGGTCCAAAGTAGCTTTGCA+AGG - chr5_2:69446388-69446407 Msa0784780:intron 45.0%
CACAACCCGCCACTATATAA+AGG - chr5_2:69446804-69446823 Msa0784780:intron 45.0%
GAGAAATGAGCATGTGTGAG+TGG - chr5_2:69446859-69446878 Msa0784780:CDS 45.0%
!! GGGTATACGAATTTTTGGGG+TGG - chr5_2:69446942-69446961 Msa0784780:intron 45.0%
!!! TTTTGGGGTGGTACACATAG+TGG - chr5_2:69446954-69446973 Msa0784780:intron 45.0%
TCCAGTTGTTGAGGCTGTTA+GGG + chr5_2:69447805-69447824 None:intergenic 45.0%
ATCCAGTTGTTGAGGCTGTT+AGG + chr5_2:69447806-69447825 None:intergenic 45.0%
CACACACCTCATAAGGATCT+TGG + chr5_2:69447907-69447926 None:intergenic 45.0%
!! TGCACAAAGGTCTTGTTGCA+TGG - chr5_2:69447955-69447974 Msa0784780:intron 45.0%
!! AGGTCTTGTTGCATGGAGAT+TGG - chr5_2:69447962-69447981 Msa0784780:intron 45.0%
!! GGTCTTGTTGCATGGAGATT+GGG - chr5_2:69447963-69447982 Msa0784780:intron 45.0%
! TGGGTCCTGATTTTTCTGCT+AGG - chr5_2:69447982-69448001 Msa0784780:intron 45.0%
! GGGTCCTGATTTTTCTGCTA+GGG - chr5_2:69447983-69448002 Msa0784780:intron 45.0%
! TCCTGATTTTTCTGCTAGGG+TGG - chr5_2:69447986-69448005 Msa0784780:intron 45.0%
TCCACCCTAGCAGAAAAATC+AGG + chr5_2:69447990-69448009 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+GGG - chr5_2:69448001-69448020 Msa0784780:intron 45.0%
TATTCAAGGGAAACCTGCGA+GGG - chr5_2:69448014-69448033 Msa0784780:intron 45.0%
TTTCCTTCTAGTCAATCCCG+AGG - chr5_2:69448202-69448221 Msa0784780:intron 45.0%
TTAGCTGTACCTGAGTGGTT+TGG - chr5_2:69448383-69448402 Msa0784780:intron 45.0%
CCCTACAAAACGTTGTCATG+TGG - chr5_2:69448543-69448562 Msa0784780:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG - chr5_2:69448871-69448890 Msa0784780:intron 45.0%
ATTATCGGGGTACACGAACT+TGG - chr5_2:69448913-69448932 Msa0784780:intron 45.0%
TGCCAGCTAGGAACAAAGTA+CGG + chr5_2:69448982-69449001 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG + chr5_2:69448994-69449013 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG - chr5_2:69449464-69449483 Msa0784780:intron 45.0%
CCAATTGCCGGATTTGCATT+GGG - chr5_2:69449465-69449484 Msa0784780:intron 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG - chr5_2:69449486-69449505 Msa0784780:intron 45.0%
ATACCTCCAAGTGACGGTAT+TGG - chr5_2:69449516-69449535 Msa0784780:intron 45.0%
ACAACACCAATACCGTCACT+TGG + chr5_2:69449525-69449544 None:intergenic 45.0%
ATATAGCTTACCAATGCCGC+CGG + chr5_2:69449583-69449602 None:intergenic 45.0%
CTTGCTAACGTTCTCAAGGA+AGG - chr5_2:69449771-69449790 Msa0784780:CDS 45.0%
CTATCAACCCTCTTGTCATC+TGG - chr5_2:69449805-69449824 Msa0784780:CDS 45.0%
ATTCCCGCTGGAGAAATTGA+TGG - chr5_2:69449864-69449883 Msa0784780:intron 45.0%
TCACTCTTAGGTTTGGCCAT+CGG - chr5_2:69449952-69449971 Msa0784780:intron 45.0%
GAGTTGCTCATAACCTTGTC+AGG + chr5_2:69450225-69450244 None:intergenic 45.0%
!! GTATCTAAAGAGGCACCCAA+TGG + chr5_2:69450247-69450266 None:intergenic 45.0%
GTCTTTGGCATGCAATGATC+TGG + chr5_2:69450427-69450446 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG + chr5_2:69450618-69450637 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG + chr5_2:69450646-69450665 None:intergenic 45.0%
!! TATGCTTTGGGAGTCCATTC+AGG + chr5_2:69450743-69450762 None:intergenic 45.0%
GGAGTCGAATGCTATGCTTT+GGG + chr5_2:69450755-69450774 None:intergenic 45.0%
!!! TGCTGTCAATTTTGGTTCCG+AGG - chr5_2:69450865-69450884 Msa0784780:intron 45.0%
!! AGCCACCATTTTTCGCTTCT+AGG - chr5_2:69450908-69450927 Msa0784780:intron 45.0%
GTCCTAGAAGCGAAAAATGG+TGG + chr5_2:69450913-69450932 None:intergenic 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG + chr5_2:69451118-69451137 None:intergenic 45.0%
TCCATAAACGGGAAAGGGTA+TGG + chr5_2:69451580-69451599 None:intergenic 45.0%
ACACTCTGGCAACATCACTA+TGG - chr5_2:69451641-69451660 Msa0784780:CDS 45.0%
AAGAAGAAGGAAGTGACGCG+AGG + chr5_2:69443242-69443261 None:intergenic 50.0%
! GTCTGATGGTGATAACGACG+AGG - chr5_2:69443563-69443582 Msa0784780:CDS 50.0%
AGTGTGTGAGTCTCATCACC+AGG + chr5_2:69444092-69444111 None:intergenic 50.0%
TACGTTGATACGCAGGGACA+CGG + chr5_2:69444151-69444170 None:intergenic 50.0%
CTGCAAGTACGTTGATACGC+AGG + chr5_2:69444158-69444177 None:intergenic 50.0%
TTGAGCTACGTATGCCGTCA+AGG - chr5_2:69444371-69444390 Msa0784780:intron 50.0%
GTTGATCGCGTCCAAATTCG+TGG + chr5_2:69444515-69444534 None:intergenic 50.0%
! TGGAGGGTTACTTTGCTCAG+AGG + chr5_2:69445310-69445329 None:intergenic 50.0%
GTTCTGCATCTACAGGTGGA+GGG + chr5_2:69445326-69445345 None:intergenic 50.0%
TGTTCTGCATCTACAGGTGG+AGG + chr5_2:69445327-69445346 None:intergenic 50.0%
AGCTGTTCTGCATCTACAGG+TGG + chr5_2:69445330-69445349 None:intergenic 50.0%
! CCCATGAGCAATAGCGCTTT+TGG + chr5_2:69445503-69445522 None:intergenic 50.0%
CACACCCCACCACTATAAAG+CGG - chr5_2:69445667-69445686 Msa0784780:CDS 50.0%
ACACCCCACCACTATAAAGC+GGG - chr5_2:69445668-69445687 Msa0784780:CDS 50.0%
CATAGAGCCCCGCTTTATAG+TGG + chr5_2:69445679-69445698 None:intergenic 50.0%
TGCTGCAGTTCATATGTCCC+AGG - chr5_2:69446300-69446319 Msa0784780:intron 50.0%
CATCAGCAACCTTGCATCCT+GGG + chr5_2:69446320-69446339 None:intergenic 50.0%
! GGTGGTACACATAGTGGAGA+GGG - chr5_2:69446960-69446979 Msa0784780:intron 50.0%
TTGGACTGTTTCCATGGACG+TGG - chr5_2:69447035-69447054 Msa0784780:intron 50.0%
TGGACTGTTTCCATGGACGT+GGG - chr5_2:69447036-69447055 Msa0784780:intron 50.0%
! GACACTTTTACCCACGTCCA+TGG + chr5_2:69447049-69447068 None:intergenic 50.0%
TCCCTAACAGCCTCAACAAC+TGG - chr5_2:69447801-69447820 Msa0784780:intron 50.0%
! CTAGGGTGGAGTGCTATTCA+AGG - chr5_2:69448000-69448019 Msa0784780:intron 50.0%
CTATTCAAGGGAAACCTGCG+AGG - chr5_2:69448013-69448032 Msa0784780:intron 50.0%
!! TTTTAGAAGCTTGCCCTCGC+AGG + chr5_2:69448030-69448049 None:intergenic 50.0%
CATCCTCGGGATTGACTAGA+AGG + chr5_2:69448208-69448227 None:intergenic 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG - chr5_2:69448398-69448417 Msa0784780:intron 50.0%
GGACTCCAAGCTTAACTCCA+AGG + chr5_2:69448960-69448979 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG - chr5_2:69448977-69448996 Msa0784780:intron 50.0%
GCCAGCTAGGAACAAAGTAC+GGG + chr5_2:69448981-69449000 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG - chr5_2:69448981-69449000 Msa0784780:intron 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG - chr5_2:69449375-69449394 Msa0784780:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG - chr5_2:69449441-69449460 Msa0784780:intron 50.0%
CCCAATGCAAATCCGGCAAT+TGG + chr5_2:69449468-69449487 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG + chr5_2:69449522-69449541 None:intergenic 50.0%
TCCAGCGGGAATACTGTTGA+TGG + chr5_2:69449856-69449875 None:intergenic 50.0%
CCTCCATCAATTTCTCCAGC+GGG + chr5_2:69449870-69449889 None:intergenic 50.0%
CCCTCCATCAATTTCTCCAG+CGG + chr5_2:69449871-69449890 None:intergenic 50.0%
CCGCTGGAGAAATTGATGGA+GGG - chr5_2:69449868-69449887 Msa0784780:intron 50.0%
TGCTCATAACCTTGTCAGGG+CGG + chr5_2:69450221-69450240 None:intergenic 50.0%
CATTGCATGCCAAAGACCCA+AGG - chr5_2:69450430-69450449 Msa0784780:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG + chr5_2:69450442-69450461 None:intergenic 50.0%
! TACACAGGAGGCATAGGTCT+TGG + chr5_2:69450541-69450560 None:intergenic 50.0%
! TCTCAGTACACAGGAGGCAT+AGG + chr5_2:69450547-69450566 None:intergenic 50.0%
! GCGTTTTCTCAGTACACAGG+AGG + chr5_2:69450553-69450572 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG + chr5_2:69450632-69450651 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG + chr5_2:69450667-69450686 None:intergenic 50.0%
AGACTTGGCAAGCTGGAACA+CGG + chr5_2:69450686-69450705 None:intergenic 50.0%
! GGAGAAGCCAGACCAGATTT+TGG + chr5_2:69450722-69450741 None:intergenic 50.0%
CGGAGTCGAATGCTATGCTT+TGG + chr5_2:69450756-69450775 None:intergenic 50.0%
GTGGAGGGAAAGTAGAGATG+TGG + chr5_2:69451039-69451058 None:intergenic 50.0%
CAGGCTTCAATTCGCTTCAC+AGG - chr5_2:69451370-69451389 Msa0784780:intron 50.0%
GCCATACCCTTTCCCGTTTA+TGG - chr5_2:69451576-69451595 Msa0784780:CDS 50.0%
GTTGCCAGAGTGTAAGCATG+TGG + chr5_2:69451634-69451653 None:intergenic 50.0%
ACGCGGAAAGTGGAAGGTGA+AGG + chr5_2:69443393-69443412 None:intergenic 55.0%
! CAAGAAGTGCAGTGGGAGAG+AGG + chr5_2:69443420-69443439 None:intergenic 55.0%
ACGTTGATACGCAGGGACAC+GGG + chr5_2:69444150-69444169 None:intergenic 55.0%
! CGCTTTATAGTGGTGGGGTG+TGG + chr5_2:69445669-69445688 None:intergenic 55.0%
CACCCCACCACTATAAAGCG+GGG - chr5_2:69445669-69445688 Msa0784780:CDS 55.0%
AGCCCCGCTTTATAGTGGTG+GGG + chr5_2:69445674-69445693 None:intergenic 55.0%
GAGCCCCGCTTTATAGTGGT+GGG + chr5_2:69445675-69445694 None:intergenic 55.0%
AGAGCCCCGCTTTATAGTGG+TGG + chr5_2:69445676-69445695 None:intergenic 55.0%
GCATCAGCAACCTTGCATCC+TGG + chr5_2:69446321-69446340 None:intergenic 55.0%
! GGGTGGTACACATAGTGGAG+AGG - chr5_2:69446959-69446978 Msa0784780:intron 55.0%
ATCACCTCTGCCAGGTGTGA+AGG - chr5_2:69447679-69447698 Msa0784780:intron 55.0%
ATCACCTTCACACCTGGCAG+AGG + chr5_2:69447686-69447705 None:intergenic 55.0%
TCCCGAGGATGATAAGCCAG+TGG - chr5_2:69448217-69448236 Msa0784780:intron 55.0%
!! GCCACTGGCTTATCATCCTC+GGG + chr5_2:69448221-69448240 None:intergenic 55.0%
!! GGCCACTGGCTTATCATCCT+CGG + chr5_2:69448222-69448241 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG + chr5_2:69448441-69448460 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG + chr5_2:69448888-69448907 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG + chr5_2:69448892-69448911 None:intergenic 55.0%
!! CACGAGTCATTTCTAGCCGG+CGG - chr5_2:69449564-69449583 Msa0784780:intron 55.0%
!! TCATTTCTAGCCGGCGGCAT+TGG - chr5_2:69449570-69449589 Msa0784780:intron 55.0%
ACCCTCTTGTCATCTGGGCT+TGG - chr5_2:69449811-69449830 Msa0784780:CDS 55.0%
CCCAAGCCCAGATGACAAGA+GGG + chr5_2:69449815-69449834 None:intergenic 55.0%
CCCTCTTGTCATCTGGGCTT+GGG - chr5_2:69449812-69449831 Msa0784780:CDS 55.0%
GCCATCAACAGTATTCCCGC+TGG - chr5_2:69449852-69449871 Msa0784780:intron 55.0%
CCCGCTGGAGAAATTGATGG+AGG - chr5_2:69449867-69449886 Msa0784780:intron 55.0%
GGCAGAAGCTGAGAGCTGTT+TGG + chr5_2:69450597-69450616 None:intergenic 55.0%
TCCAGCTTGCCAAGTCTGCT+TGG - chr5_2:69450689-69450708 Msa0784780:intron 55.0%
CCAGCTTGCCAAGTCTGCTT+GGG - chr5_2:69450690-69450709 Msa0784780:intron 55.0%
TTGCCAAGTCTGCTTGGGCT+CGG - chr5_2:69450695-69450714 Msa0784780:intron 55.0%
! CTGGTCTGGCTTCTCCTGAA+TGG - chr5_2:69450726-69450745 Msa0784780:intron 55.0%
GTGGCCACATGCTTACACTC+TGG - chr5_2:69451627-69451646 Msa0784780:CDS 55.0%
GGAACGACGCGGAAAGTGGA+AGG + chr5_2:69443399-69443418 None:intergenic 60.0%
GAGAGGAACGACGCGGAAAG+TGG + chr5_2:69443403-69443422 None:intergenic 60.0%
AGTGGGAGAGAGGAACGACG+CGG + chr5_2:69443410-69443429 None:intergenic 60.0%
CTGACACGTCGACACGACAC+TGG - chr5_2:69443831-69443850 Msa0784780:intron 60.0%
ACCTGGCAGAGGTGATCCAC+TGG + chr5_2:69447675-69447694 None:intergenic 60.0%
CTTGGAACGACAACGGCCAC+TGG + chr5_2:69448236-69448255 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG + chr5_2:69448395-69448414 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG - chr5_2:69449453-69449472 Msa0784780:intron 60.0%
GCCCAAGCCCAGATGACAAG+AGG + chr5_2:69449816-69449835 None:intergenic 60.0%
CTTGTCATCTGGGCTTGGGC+AGG - chr5_2:69449816-69449835 Msa0784780:CDS 60.0%
CCCAAGCAGACTTGGCAAGC+TGG + chr5_2:69450693-69450712 None:intergenic 60.0%
TGCCAAGTCTGCTTGGGCTC+GGG - chr5_2:69450696-69450715 Msa0784780:intron 60.0%
CTTGGGCTCGGGCCAAAATC+TGG - chr5_2:69450707-69450726 Msa0784780:intron 60.0%
GCTCGGGCCAAAATCTGGTC+TGG - chr5_2:69450712-69450731 Msa0784780:intron 60.0%
GCCAGTGGATCACCTCTGCC+AGG - chr5_2:69447671-69447690 Msa0784780:intron 65.0%
GTGATGCAGCCGCCCTGACA+AGG - chr5_2:69450209-69450228 Msa0784780:intron 65.0%
GGCCCGAGCCCAAGCAGACT+TGG + chr5_2:69450701-69450720 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 69443211 69451907 69443211 ID=Msa0784780;Name=Msa0784780
chr5_2 mRNA 69443211 69451907 69443211 ID=Msa0784780-mRNA-1;Parent=Msa0784780;Name=Msa0784780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164|0.88|1|1|1|1|10|286|479
chr5_2 exon 69443211 69443745 69443211 ID=Msa0784780-mRNA-1:exon:20890;Parent=Msa0784780-mRNA-1
chr5_2 exon 69445198 69445358 69445198 ID=Msa0784780-mRNA-1:exon:20889;Parent=Msa0784780-mRNA-1
chr5_2 exon 69445527 69445734 69445527 ID=Msa0784780-mRNA-1:exon:20888;Parent=Msa0784780-mRNA-1
chr5_2 exon 69446116 69446269 69446116 ID=Msa0784780-mRNA-1:exon:20887;Parent=Msa0784780-mRNA-1
chr5_2 exon 69446638 69446731 69446638 ID=Msa0784780-mRNA-1:exon:20886;Parent=Msa0784780-mRNA-1
chr5_2 exon 69446837 69446942 69446837 ID=Msa0784780-mRNA-1:exon:20885;Parent=Msa0784780-mRNA-1
chr5_2 exon 69447040 69447114 69447040 ID=Msa0784780-mRNA-1:exon:20884;Parent=Msa0784780-mRNA-1
chr5_2 exon 69447418 69447468 69447418 ID=Msa0784780-mRNA-1:exon:20883;Parent=Msa0784780-mRNA-1
chr5_2 exon 69449726 69449857 69449726 ID=Msa0784780-mRNA-1:exon:20882;Parent=Msa0784780-mRNA-1
chr5_2 exon 69451534 69451907 69451534 ID=Msa0784780-mRNA-1:exon:20881;Parent=Msa0784780-mRNA-1
chr5_2 five_prime_UTR 69451744 69451907 69451744 ID=Msa0784780-mRNA-1:five_prime_utr;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69451534 69451743 69451534 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69449726 69449857 69449726 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69447418 69447468 69447418 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69447040 69447114 69447040 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69446837 69446942 69446837 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69446638 69446731 69446638 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69446116 69446269 69446116 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69445527 69445734 69445527 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69445198 69445358 69445198 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 CDS 69443497 69443745 69443497 ID=Msa0784780-mRNA-1:cds;Parent=Msa0784780-mRNA-1
chr5_2 three_prime_UTR 69443211 69443496 69443211 ID=Msa0784780-mRNA-1:three_prime_utr;Parent=Msa0784780-mRNA-1
Gene Sequence

>Msa0784780

ATGAATCTCTCACTACCTTCACCTTCCACTTTCCGCGTCGTTCCTCTCTCCCACTGCACTTCTTGCTTTCAATTCAATCTTCGTTTTCATCCTTCTAATCGTTTTCGTAATTCGCGTTCGAGTGCGTTGAAGTTGAATCCTCCTACAGGAAGAAGAAGAAGAAGACGGATTGCTTGTAGTGTTAATGAGTCTGATGGTGATAACGACGAGGAGAAAGAAGCACATAAAAATGGAGAAACACAATCTTTGGAGGATACCTCTGAGCAAAGTAACCCTCCACCTGTAGATGCAGAACAGCTAAACAAGTTTAGTGATGAAAATACAAATCAAAATGATGTGCAGAATACGGATAACATAGAAGTTGCCAGTGGATCACCTCTGCCAGGTGTGAAGGGTGGAGTGCTATTCAAGGGAAACCTGCGAGGGCAAGCTTCTAAAAGTTATGATAAGATATCAAAGAGATTGCAAGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTAGTCAATCCCGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGAATTTGTTAAAGGATGGCCTACCTGGAGCCCTTGTTACTGCACTTATTATCGGGGTACACGAACTTGGTCACTTTTTAGTTGCCCAAAACCTTGGAGTTAAGCTTGGAGTCCCGTACTTTGTTCCTAGCTGGCAGATAGGCTCTTTTGGTTCAATTACAAGGATAAGAAGCATAGTATCTAATCGTGAAGATTTGCTCAAGATTGCAGCTGCTGGACCAATTGCCGGATTTGCATTGGGTCTTGTTCTTCTGCTTCTAGGTTTTGTTATACCTCCAAGTGACGGTATTGGTGTTGTTGTTGATGCTTCTGTGTTTCACGAGTCATTTCTAGCCGGCGGCATTGCAAAACTGTTTCTTGCTAACGTTCTCAAGGAAGGAACTCCAATTTCTATCAACCCTCTTGTCATCTGGGCTTGGGCAGGACTCCTTATCAATGCCATCAACAGTATTCCCGCTGGAGAAATTGATGGAGGGAGAATTTCTTTTGCCATATGGGGAAGAAAGGCTTCAATTCGCTTCACAGGATTTTCGATTGTGTTGCTTGGACTGTCATCACTGCTTAATGATGTAGCTTTCTACTGGGTAGTTCTTATATTCTTCTTGCAAAGAGGTCCAATTTCACCTCTATCTGATGAAATAACTGAACCTGATGACAAGTATGTTGCTCTTGGAGTAACAGTTTTGCTCTTGGGCTTGTTAGTTTGCTTGCCATACCCTTTCCCGTTTATGGATGAAACCCTTGCAAGTTTCTAG

Protein sequence

>Msa0784780

MNLSLPSPSTFRVVPLSHCTSCFQFNLRFHPSNRFRNSRSSALKLNPPTGRRRRRRIACSVNESDGDNDEEKEAHKNGETQSLEDTSEQSNPPPVDAEQLNKFSDENTNQNDVQNTDNIEVASGSPLPGVKGGVLFKGNLRGQASKSYDKISKRLQDKFGDEYRLFLLVNPEDDKPVAVVVPRTTLQPETTPVPEWFGAASFGIVTVFTLLLRNVPNLQSDLLSTVDNLNLLKDGLPGALVTALIIGVHELGHFLVAQNLGVKLGVPYFVPSWQIGSFGSITRIRSIVSNREDLLKIAAAGPIAGFALGLVLLLLGFVIPPSDGIGVVVDASVFHESFLAGGIAKLFLANVLKEGTPISINPLVIWAWAGLLINAINSIPAGEIDGGRISFAIWGRKASIRFTGFSIVLLGLSSLLNDVAFYWVVLIFFLQRGPISPLSDEITEPDDKYVALGVTVLLLGLLVCLPYPFPFMDETLASF*