AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042210 MtrunA17_Chr1g0181891 81.440 361 32 4 1 326 1 361 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042210 AT5G12130.1 57.292 384 102 5 1 325 1 381 2.05e-137 395
Msa0042210 AT5G12130.2 72.794 272 55 1 73 325 70 341 5.52e-137 392

Find 95 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTACAGGGATCAATTTC+TGG 0.173453 1_1:+72972386 None:intergenic
CGCCTGATAATAATACTTCT+TGG 0.220107 1_1:-72973075 Msa0042210:CDS
CTTAACTTATCTTGTAATTC+TGG 0.225297 1_1:-72975571 Msa0042210:five_prime_UTR
AACCAAAAGAGTGGTATTAT+TGG 0.232223 1_1:-72975543 Msa0042210:five_prime_UTR
CTGTTAGAGCTGTAGCCTTA+TGG 0.249487 1_1:-72974127 Msa0042210:CDS
GGGTTCCTCAGTTGGCTATT+TGG 0.261962 1_1:+72968697 None:intergenic
TTAGAAGAAAACACTATAAA+TGG 0.262800 1_1:+72971377 None:intergenic
GCTGTTGTACTGGGATTTAT+TGG 0.265015 1_1:-72969084 Msa0042210:CDS
GATGATAAAGGAATAATAAA+TGG 0.280495 1_1:+72968767 None:intergenic
ATTTGGGGTGTGGGTAGAAT+TGG 0.281978 1_1:+72968798 None:intergenic
CATTATGATTCAATGGAGTT+TGG 0.284616 1_1:+72975437 None:intergenic
TAGAGAACATTACTTGTTAC+AGG 0.291477 1_1:+72972373 None:intergenic
GTGGGTAGAATTGGATTTCT+TGG 0.296890 1_1:+72968807 None:intergenic
GCCGTCCATTGCTGTTGTAC+TGG 0.308097 1_1:-72969094 Msa0042210:CDS
TCAAATTTGAATTATGAGTT+TGG 0.317493 1_1:-72975482 Msa0042210:exon
AGCCAATAATACCACTCTTT+TGG 0.321171 1_1:+72975541 None:intergenic
TTCCAAGAAGTATTATTATC+AGG 0.326520 1_1:+72973073 None:intergenic
GAAGTGGAGTGTAGAGGTTT+TGG 0.332081 1_1:+72975386 None:intergenic
CCTTGTTTATAGATACATAT+TGG 0.332813 1_1:-72973349 Msa0042210:intron
AAGATGATCTTGGACTATTT+TGG 0.334282 1_1:-72969057 Msa0042210:intron
TGTTAGAGCTGTAGCCTTAT+GGG 0.336554 1_1:-72974126 Msa0042210:intron
GAGAAAATGAATTGAAACTT+TGG 0.340602 1_1:+72975503 None:intergenic
TAACAAATCAGGATGGGATA+TGG 0.357049 1_1:-72971774 Msa0042210:CDS
GTACTTTCCTATGGTATTGC+TGG 0.361260 1_1:-72973111 Msa0042210:CDS
GAATCATAATGACCCTTATC+AGG 0.364562 1_1:-72975425 Msa0042210:CDS
GTCAGAATTGAAGTACTTAC+AGG 0.370831 1_1:-72970904 Msa0042210:intron
CTGTTGTACTGGGATTTATT+GGG 0.375873 1_1:-72969083 Msa0042210:CDS
CATTGGAGTGATATTAAGTC+TGG 0.387073 1_1:-72968899 Msa0042210:CDS
TGCATCACCTGATACAAAAC+TGG 0.390885 1_1:+72973264 None:intergenic
TCTTGGAACAGCCACCATTC+AGG 0.402272 1_1:-72973058 Msa0042210:intron
TAATGACCCTTATCAGGATC+AGG 0.404158 1_1:-72975419 Msa0042210:CDS
TATTGGGTGTAAGATGATCT+TGG 0.406333 1_1:-72969067 Msa0042210:CDS
AGATAGGACGGTGAAGGAAG+TGG 0.408111 1_1:+72975370 None:intergenic
CCGAGTATACAAGATGATAA+AGG 0.408126 1_1:+72968755 None:intergenic
CCGTCCATTGCTGTTGTACT+GGG 0.410679 1_1:-72969093 Msa0042210:CDS
AAGGCATCAGAATTCTTTGC+TGG 0.414094 1_1:-72973949 Msa0042210:CDS
CCTTTATCATCTTGTATACT+CGG 0.414413 1_1:-72968755 Msa0042210:three_prime_UTR
TTGAAACCCTGATCCTGATA+AGG 0.428007 1_1:+72975412 None:intergenic
GTTTGCGCCGCAGTAGCATT+TGG 0.429457 1_1:-72974003 Msa0042210:CDS
GTCTCAACGGAGGCATCTCT+TGG 0.430135 1_1:-72968943 Msa0042210:CDS
AATTGAAACTTTGGAGAGAA+GGG 0.436110 1_1:+72975512 None:intergenic
AAACAAGTTCATAACAAATC+AGG 0.439299 1_1:-72971785 Msa0042210:CDS
TGAAACCCTGATCCTGATAA+GGG 0.441780 1_1:+72975413 None:intergenic
CAGAGATTTACCCACCCATA+AGG 0.448990 1_1:+72974112 None:intergenic
CAGAATCGTGTACTTTCCTA+TGG 0.449268 1_1:-72973120 Msa0042210:CDS
ATGGAGAATACCTGAGGAAA+AGG 0.451694 1_1:+72975344 None:intergenic
ATTGTTGCAGCATATTATGA+TGG 0.458126 1_1:-72971808 Msa0042210:intron
CCTGAGGAAAAGGAAGAGAT+AGG 0.458480 1_1:+72975354 None:intergenic
GCAAGATAGCTTACCCAGAA+TGG 0.477769 1_1:+72971346 None:intergenic
GTAGCCTCTAGTCTTTCCAT+TGG 0.487920 1_1:-72968916 Msa0042210:CDS
CACCACCACTCATAAAATCA+AGG 0.489126 1_1:+72974219 None:intergenic
ATTTATCAAATGTAGGTTTG+AGG 0.510439 1_1:-72970956 Msa0042210:intron
GCCATAGCACAGTCTACAAA+GGG 0.523116 1_1:+72968677 None:intergenic
TAAGGGTCATTATGATTCAA+TGG 0.527032 1_1:+72975430 None:intergenic
GTAGCATTTGGTGTTGGTGT+GGG 0.536752 1_1:-72973991 Msa0042210:CDS
GAGCTCAACTCATTCTGAGT+TGG 0.540882 1_1:+72968851 None:intergenic
ACTTTACGTGATAATTTCTG+AGG 0.542248 1_1:-72970931 Msa0042210:CDS
TTGAAACTTTGGAGAGAAGG+GGG 0.543010 1_1:+72975514 None:intergenic
AGGAAGAGATAGGACGGTGA+AGG 0.543420 1_1:+72975364 None:intergenic
GAATTGAAACTTTGGAGAGA+AGG 0.547136 1_1:+72975511 None:intergenic
TGATGAGATATCTTCTACTG+AGG 0.548341 1_1:-72974165 Msa0042210:CDS
TTGGCTTCTGTTGTTCACAA+TGG 0.556243 1_1:-72975463 Msa0042210:CDS
GCCGCAGTAGCATTTGGTGT+TGG 0.559997 1_1:-72973997 Msa0042210:CDS
GTGAAGGAAGTGGAGTGTAG+AGG 0.568026 1_1:+72975380 None:intergenic
AGTAGCATTTGGTGTTGGTG+TGG 0.569083 1_1:-72973992 Msa0042210:CDS
TCTACAAAGGGTTCCTCAGT+TGG 0.573428 1_1:+72968689 None:intergenic
GAGATGCCTCCGTTGAGACA+TGG 0.574395 1_1:+72968947 None:intergenic
AATGACCCTTATCAGGATCA+GGG 0.576136 1_1:-72975418 Msa0042210:CDS
AGGCATCAGAATTCTTTGCT+GGG 0.578831 1_1:-72973948 Msa0042210:intron
AATGTCACTGAGTTCAATAA+CGG 0.580060 1_1:+72971530 None:intergenic
ATTGAAACTTTGGAGAGAAG+GGG 0.583653 1_1:+72975513 None:intergenic
ACCCTTTGTAGACTGTGCTA+TGG 0.588312 1_1:-72968678 Msa0042210:three_prime_UTR
AGTTCATAACAAATCAGGAT+GGG 0.600192 1_1:-72971780 Msa0042210:CDS
TACAGGATTCCATGTCTCAA+CGG 0.603150 1_1:-72968956 Msa0042210:intron
ACCAACACCAAATGCTACTG+CGG 0.603707 1_1:+72973996 None:intergenic
AAATCCCAGTACAACAGCAA+TGG 0.605163 1_1:+72969089 None:intergenic
AGAGAACATTACTTGTTACA+GGG 0.606173 1_1:+72972374 None:intergenic
CCCAGTACAACAGCAATGGA+CGG 0.606201 1_1:+72969093 None:intergenic
AAATCAGGATGGGATATGGA+TGG 0.609233 1_1:-72971770 Msa0042210:intron
AGCCATAGCACAGTCTACAA+AGG 0.609625 1_1:+72968676 None:intergenic
CTTTACGTGATAATTTCTGA+GGG 0.610819 1_1:-72970930 Msa0042210:CDS
ACGGCTACGGTAAGAAGCAA+AGG 0.614565 1_1:+72971549 None:intergenic
CACTCCAATGGAAAGACTAG+AGG 0.616706 1_1:+72968912 None:intergenic
CAGACTTAATATCACTCCAA+TGG 0.619498 1_1:+72968900 None:intergenic
ACTGAGTTCAATAACGGCTA+CGG 0.624614 1_1:+72971536 None:intergenic
AAGTTCATAACAAATCAGGA+TGG 0.640212 1_1:-72971781 Msa0042210:CDS
AGGAAAAGGAAGAGATAGGA+CGG 0.645585 1_1:+72975358 None:intergenic
ACCACCACTCATAAAATCAA+GGG 0.646726 1_1:+72974220 None:intergenic
TTGAAAACACACCTGAATGG+TGG 0.653741 1_1:+72973047 None:intergenic
TACGGTAAGAAGCAAAGGTG+TGG 0.654323 1_1:+72971554 None:intergenic
AACTGCACCAGCAATACCAT+AGG 0.661157 1_1:+72973104 None:intergenic
CTGGCGCAAAACCAAAAGAG+TGG 0.669445 1_1:-72975552 Msa0042210:five_prime_UTR
ATTGGAGCAAAGTCTCTCAG+TGG 0.684312 1_1:-72973331 Msa0042210:CDS
ATTAGCCAAATAGCCAACTG+AGG 0.692887 1_1:-72968702 Msa0042210:three_prime_UTR
AGGATTCCATGTCTCAACGG+AGG 0.720260 1_1:-72968953 Msa0042210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAAAAATAGATTT+TGG + chr1_1:72969353-72969372 None:intergenic 10.0%
!!! TTTTTTTTTTTTCAAAAACA+AGG - chr1_1:72969360-72969379 Msa0042210:intron 10.0%
!! CAAAATTTGATATAATTATA+AGG - chr1_1:72969909-72969928 Msa0042210:intron 10.0%
!!! ATTTTTAAAATTTTCTAGAA+TGG - chr1_1:72970268-72970287 Msa0042210:intron 10.0%
!!! TTTTTAAAATTTTCTAGAAT+GGG - chr1_1:72970269-72970288 Msa0042210:intron 10.0%
!!! TTTTTTTTTTTTTGTATTTG+TGG - chr1_1:72971202-72971221 Msa0042210:intron 10.0%
!! AAAGTTTAATTAAATTATGA+AGG - chr1_1:72971516-72971535 Msa0042210:intron 10.0%
!! AAAATTAAATTCAAATATAC+AGG + chr1_1:72972889-72972908 None:intergenic 10.0%
!! ATTCATTATAAAATACAAAA+TGG + chr1_1:72974780-72974799 None:intergenic 10.0%
!!! TTATAATGAATTTTATCATA+AGG - chr1_1:72974789-72974808 Msa0042210:intron 10.0%
!!! TTAAAAGGTGATTTTTTTTT+TGG - chr1_1:72969425-72969444 Msa0042210:intron 15.0%
!! ATTTATTCAAAATCTATTCT+TGG - chr1_1:72969513-72969532 Msa0042210:intron 15.0%
!!! TTTTTTTTATTTTTGATCCA+AGG - chr1_1:72969572-72969591 Msa0042210:intron 15.0%
!! TTATGATAAGTAATAAAAAG+TGG - chr1_1:72969873-72969892 Msa0042210:intron 15.0%
!!! CTTTAAGTTTTTTAATCATT+TGG - chr1_1:72970552-72970571 Msa0042210:intron 15.0%
!!! TTTGTTATAAAGTTGTTTAT+TGG + chr1_1:72973010-72973029 None:intergenic 15.0%
!! TTCTTTAAATGAATTACATT+TGG - chr1_1:72973370-72973389 Msa0042210:intron 15.0%
!! TCTTTAAATGAATTACATTT+GGG - chr1_1:72973371-72973390 Msa0042210:intron 15.0%
!!! AAAAACTTTAGAAAGATAAA+TGG - chr1_1:72973577-72973596 Msa0042210:intron 15.0%
!!! AGGTTTTTAATTTCAAAATA+GGG + chr1_1:72974063-72974082 None:intergenic 15.0%
!!! TAGGTTTTTAATTTCAAAAT+AGG + chr1_1:72974064-72974083 None:intergenic 15.0%
!! ATAAAATGAAATTATTAGGA+GGG + chr1_1:72974815-72974834 None:intergenic 15.0%
!! AATAAAATGAAATTATTAGG+AGG + chr1_1:72974816-72974835 None:intergenic 15.0%
!! TTTGTAATATATCATATCAA+TGG + chr1_1:72975004-72975023 None:intergenic 15.0%
!!! ATAAATGGATATTTTCATTT+GGG + chr1_1:72975406-72975425 None:intergenic 15.0%
!!! AATAAATGGATATTTTCATT+TGG + chr1_1:72975407-72975426 None:intergenic 15.0%
!!! GAGATATTTATTTTATATGT+TGG - chr1_1:72975456-72975475 Msa0042210:CDS 15.0%
!! TCAAATTTGAATTATGAGTT+TGG - chr1_1:72968703-72968722 Msa0042210:three_prime_UTR 20.0%
!! AGTAATTAAGAAGATGAATT+TGG + chr1_1:72968886-72968905 None:intergenic 20.0%
!!! AATAACTTTTGTCATTTTGA+AGG - chr1_1:72969242-72969261 Msa0042210:intron 20.0%
!!! CTCTAAAATGAAAAGTTATT+AGG - chr1_1:72969317-72969336 Msa0042210:intron 20.0%
!!! TTTTTTTTTCAAAAACAAGG+AGG - chr1_1:72969363-72969382 Msa0042210:intron 20.0%
!!! TTGTAATTTGTAGGAATAAA+AGG + chr1_1:72969602-72969621 None:intergenic 20.0%
!! AATAAGCTAAAAACAACTTA+TGG - chr1_1:72969800-72969819 Msa0042210:intron 20.0%
!! ATTAATGTAAATGAAATCAG+AGG + chr1_1:72970142-72970161 None:intergenic 20.0%
!! CATTTACATTAATCTAGTTA+TGG - chr1_1:72970149-72970168 Msa0042210:intron 20.0%
!! AAAGAAACTTCACAAAATAT+TGG + chr1_1:72970536-72970555 None:intergenic 20.0%
!! TAAATATTGGATAATGAGAA+TGG + chr1_1:72971343-72971362 None:intergenic 20.0%
!!! AACTTAAAAGTTTAAGGTTT+AGG + chr1_1:72971595-72971614 None:intergenic 20.0%
!! TACTTCAACTTAAAAGTTTA+AGG + chr1_1:72971601-72971620 None:intergenic 20.0%
!!! ATTTTTTCAGAGTAAGATTT+TGG + chr1_1:72972359-72972378 None:intergenic 20.0%
!! AAAATTTCACATTAAATGGA+AGG + chr1_1:72972712-72972731 None:intergenic 20.0%
!! TTAGAAGAAAACACTATAAA+TGG + chr1_1:72972811-72972830 None:intergenic 20.0%
!! CTAGTAAAACTTCATTTATA+GGG - chr1_1:72972954-72972973 Msa0042210:intron 20.0%
!!! AACTGTTATTTATCAAATGT+AGG - chr1_1:72973222-72973241 Msa0042210:intron 20.0%
!!! TTATTTTCAACCACTATTTT+TGG + chr1_1:72973482-72973501 None:intergenic 20.0%
!! TGATAATTTATTCTCAAAAG+AGG - chr1_1:72973774-72973793 Msa0042210:intron 20.0%
!! TAGAGTAATATAACTCAAAA+TGG - chr1_1:72974002-72974021 Msa0042210:CDS 20.0%
!! AGAGTAATATAACTCAAAAT+GGG - chr1_1:72974003-72974022 Msa0042210:CDS 20.0%
!!! GGTTTTTAATTTCAAAATAG+GGG + chr1_1:72974062-72974081 None:intergenic 20.0%
!!! TTTTCAGAAACCAATTTTTT+TGG - chr1_1:72974424-72974443 Msa0042210:intron 20.0%
!!! TTTCAGAAACCAATTTTTTT+GGG - chr1_1:72974425-72974444 Msa0042210:intron 20.0%
!! TATCTTGAATTATGACTATA+TGG - chr1_1:72974711-72974730 Msa0042210:intron 20.0%
!! ATAAGTCATGGTATATATAA+AGG + chr1_1:72974881-72974900 None:intergenic 20.0%
!! AAATATGGATATTAATGGTA+AGG + chr1_1:72975060-72975079 None:intergenic 20.0%
!! GAACAAAATATGGATATTAA+TGG + chr1_1:72975065-72975084 None:intergenic 20.0%
!!! TAAATGGATATTTTCATTTG+GGG + chr1_1:72975405-72975424 None:intergenic 20.0%
!! GATGATAAAGGAATAATAAA+TGG + chr1_1:72975421-72975440 None:intergenic 20.0%
!!! GTCAATCAAAACATTTTTTT+TGG - chr1_1:72975577-72975596 Msa0042210:five_prime_UTR 20.0%
! CTTAACTTATCTTGTAATTC+TGG - chr1_1:72968614-72968633 Msa0042210:three_prime_UTR 25.0%
! GAGAAAATGAATTGAAACTT+TGG + chr1_1:72968685-72968704 None:intergenic 25.0%
! AATTAAGAAGATGAATTTGG+AGG + chr1_1:72968883-72968902 None:intergenic 25.0%
! ACATGGAAAAAAAGTGAATA+GGG + chr1_1:72968916-72968935 None:intergenic 25.0%
! AAATTAGAGTGCGTTTATTT+AGG - chr1_1:72969198-72969217 Msa0042210:intron 25.0%
!!! TGCGTTTATTTAGGATTTTT+GGG - chr1_1:72969207-72969226 Msa0042210:intron 25.0%
!!! TTTATTTAGGATTTTTGGGA+AGG - chr1_1:72969211-72969230 Msa0042210:intron 25.0%
! AAAAATTTACAGGTTGTGTT+TGG + chr1_1:72969549-72969568 None:intergenic 25.0%
!! TAATTTGTAGGAATAAAAGG+TGG + chr1_1:72969599-72969618 None:intergenic 25.0%
!!! CATGTAGTTTTGTAATTTGT+AGG + chr1_1:72969611-72969630 None:intergenic 25.0%
!! TTTTACAGAAGGTTATGAAA+AGG - chr1_1:72970217-72970236 Msa0042210:intron 25.0%
! AAACTTCACAAAATATTGGT+GGG + chr1_1:72970532-72970551 None:intergenic 25.0%
! CTCTGTGATATACTAATTTA+AGG + chr1_1:72970656-72970675 None:intergenic 25.0%
! GTTTGTAGTTATAGCATATT+TGG - chr1_1:72970693-72970712 Msa0042210:intron 25.0%
! CCAATATGTATCTATAAACA+AGG + chr1_1:72970839-72970858 None:intergenic 25.0%
!! CCTTGTTTATAGATACATAT+TGG - chr1_1:72970836-72970855 Msa0042210:intron 25.0%
! AGCAGTAAACAAGTTATTAT+TGG - chr1_1:72970975-72970994 Msa0042210:intron 25.0%
! CATGAATGCAAATAATTGAT+CGG - chr1_1:72971016-72971035 Msa0042210:intron 25.0%
!!! TTCCAAGAAGTATTATTATC+AGG + chr1_1:72971115-72971134 None:intergenic 25.0%
!! GATTAATACTGTGATTTTAG+AGG - chr1_1:72971260-72971279 Msa0042210:intron 25.0%
!! AGAATGAAGTGCTTAAATAT+TGG + chr1_1:72971356-72971375 None:intergenic 25.0%
! TCCTTAAAGCTTAAGATATT+AGG - chr1_1:72971424-72971443 Msa0042210:intron 25.0%
! TCCTAATATCTTAAGCTTTA+AGG + chr1_1:72971428-72971447 None:intergenic 25.0%
!! ACAAAAAATTTGAAGTTCCT+AGG + chr1_1:72971658-72971677 None:intergenic 25.0%
!!! GAACTTCAAATTTTTTGTTG+TGG - chr1_1:72971660-72971679 Msa0042210:intron 25.0%
!!! TTTCTTTCTCTTTTTGTTGT+TGG - chr1_1:72971845-72971864 Msa0042210:intron 25.0%
!!! TTTTTTGTTGATCACTTGAA+TGG - chr1_1:72971871-72971890 Msa0042210:intron 25.0%
! ATTCAGTTTCAATTGATCAA+CGG + chr1_1:72971963-72971982 None:intergenic 25.0%
! TAGAATAACTAGATATAAGC+TGG - chr1_1:72972118-72972137 Msa0042210:intron 25.0%
! AGTATTCTAATTACATTGGT+TGG - chr1_1:72972141-72972160 Msa0042210:intron 25.0%
!! AATGCTGGATTAGAATAAAT+AGG - chr1_1:72972182-72972201 Msa0042210:intron 25.0%
! TTGTATACATGTATACATGT+AGG + chr1_1:72972222-72972241 None:intergenic 25.0%
! AAACAAGTTCATAACAAATC+AGG - chr1_1:72972400-72972419 Msa0042210:CDS 25.0%
! CCACAAAATTTCACATTAAA+TGG + chr1_1:72972716-72972735 None:intergenic 25.0%
!! CCATTTAATGTGAAATTTTG+TGG - chr1_1:72972713-72972732 Msa0042210:intron 25.0%
! GCTAGTAAAACTTCATTTAT+AGG - chr1_1:72972953-72972972 Msa0042210:intron 25.0%
! ATTTATCAAATGTAGGTTTG+AGG - chr1_1:72973229-72973248 Msa0042210:intron 25.0%
!! AAAATAAACTCACGTTGTTT+TGG - chr1_1:72973495-72973514 Msa0042210:intron 25.0%
! TAAATGGCTTATCTTGAAAT+TGG - chr1_1:72973593-72973612 Msa0042210:intron 25.0%
! AAATGGCTTATCTTGAAATT+GGG - chr1_1:72973594-72973613 Msa0042210:intron 25.0%
! TTATATTCCTTTGTCTAAGT+AGG - chr1_1:72973727-72973746 Msa0042210:intron 25.0%
! AAATTGAAGTCAAATGCAAT+GGG + chr1_1:72973755-72973774 None:intergenic 25.0%
! ATCATCATTTCAGCAAAAAA+AGG - chr1_1:72973804-72973823 Msa0042210:intron 25.0%
! AATTACCTGAATCTTAATCA+AGG + chr1_1:72973861-72973880 None:intergenic 25.0%
! AAGATTCAGGTAATTTCTAA+AGG - chr1_1:72973866-72973885 Msa0042210:intron 25.0%
! CTTTGCAAGATAATAGATAT+TGG + chr1_1:72973902-72973921 None:intergenic 25.0%
!! ATATTACTCTAGCTTAGAAT+TGG + chr1_1:72973993-72974012 None:intergenic 25.0%
!!! AAAATAGGGGATTTTGATTT+TGG + chr1_1:72974049-72974068 None:intergenic 25.0%
! GATAAGAAACACATACATTT+AGG + chr1_1:72974083-72974102 None:intergenic 25.0%
! CAGTGGATCATATTAAAATT+TGG + chr1_1:72975180-72975199 None:intergenic 25.0%
AACCAAAAGAGTGGTATTAT+TGG - chr1_1:72968642-72968661 Msa0042210:three_prime_UTR 30.0%
! AATTGAAACTTTGGAGAGAA+GGG + chr1_1:72968676-72968695 None:intergenic 30.0%
CATTATGATTCAATGGAGTT+TGG + chr1_1:72968751-72968770 None:intergenic 30.0%
TAAGGGTCATTATGATTCAA+TGG + chr1_1:72968758-72968777 None:intergenic 30.0%
CATGGAAAAAAAGTGAATAG+GGG + chr1_1:72968915-72968934 None:intergenic 30.0%
GACATGGAAAAAAAGTGAAT+AGG + chr1_1:72968917-72968936 None:intergenic 30.0%
ATTTGTTTGATACATGCAAG+TGG + chr1_1:72968971-72968990 None:intergenic 30.0%
TCTAACTTGAAGGTAGAAAT+TGG - chr1_1:72969142-72969161 Msa0042210:intron 30.0%
!! GTGCGTTTATTTAGGATTTT+TGG - chr1_1:72969206-72969225 Msa0042210:intron 30.0%
AAGCATTTATGAGACTGTTT+GGG + chr1_1:72969855-72969874 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG + chr1_1:72969856-72969875 None:intergenic 30.0%
ATCTAGTTATGGTTTCTTAC+AGG - chr1_1:72970160-72970179 Msa0042210:intron 30.0%
CTATTCTAGTAGTGTAAAGT+TGG + chr1_1:72970421-72970440 None:intergenic 30.0%
GAAACTTCACAAAATATTGG+TGG + chr1_1:72970533-72970552 None:intergenic 30.0%
GCTTATCAAAGCAGAAATTA+AGG + chr1_1:72970591-72970610 None:intergenic 30.0%
! TAATTTAAGGCCATATTCAC+AGG + chr1_1:72970643-72970662 None:intergenic 30.0%
TATGCTATAACTACAAACTC+TGG + chr1_1:72970691-72970710 None:intergenic 30.0%
!!! TTGGATATTTTGAAGTACTC+TGG - chr1_1:72970754-72970773 Msa0042210:intron 30.0%
TTTGCAAACTATGTACTCAA+TGG - chr1_1:72970797-72970816 Msa0042210:intron 30.0%
TTGCAAACTATGTACTCAAT+GGG - chr1_1:72970798-72970817 Msa0042210:intron 30.0%
AAAGTTTACTCTTGACAAGA+AGG + chr1_1:72970954-72970973 None:intergenic 30.0%
!! ATTTTGAAAACACACCTGAA+TGG + chr1_1:72971144-72971163 None:intergenic 30.0%
! ATTCAGGTGTGTTTTCAAAA+TGG - chr1_1:72971143-72971162 Msa0042210:intron 30.0%
ATCACAGTATTAATCAAGAC+AGG + chr1_1:72971255-72971274 None:intergenic 30.0%
ATTGCTCTTCTCATCATTTA+AGG - chr1_1:72971314-72971333 Msa0042210:intron 30.0%
AAGCTTAAGATATTAGGACA+TGG - chr1_1:72971430-72971449 Msa0042210:intron 30.0%
ACTTTGGCTATATGATATCA+AGG - chr1_1:72971560-72971579 Msa0042210:intron 30.0%
! AGTTTAAGGTTTAGGATGAT+TGG + chr1_1:72971587-72971606 None:intergenic 30.0%
TTGTGGTATTCACAATTCTA+TGG - chr1_1:72971677-72971696 Msa0042210:intron 30.0%
! AGACTTATCTGACAACTTTT+TGG - chr1_1:72971766-72971785 Msa0042210:intron 30.0%
! AGAGAACATTACTTGTTACA+GGG + chr1_1:72971814-72971833 None:intergenic 30.0%
! TAGAGAACATTACTTGTTAC+AGG + chr1_1:72971815-72971834 None:intergenic 30.0%
AACCAATGAAAGAAGAATTC+TGG - chr1_1:72972093-72972112 Msa0042210:intron 30.0%
ATCCAGAATTCTTCTTTCAT+TGG + chr1_1:72972098-72972117 None:intergenic 30.0%
! CTGGAGTATTCTAATTACAT+TGG - chr1_1:72972137-72972156 Msa0042210:intron 30.0%
ATACTCAAATAAAACGACCA+CGG + chr1_1:72972306-72972325 None:intergenic 30.0%
ATTGTTGCAGCATATTATGA+TGG - chr1_1:72972377-72972396 Msa0042210:intron 30.0%
AAGTTCATAACAAATCAGGA+TGG - chr1_1:72972404-72972423 Msa0042210:CDS 30.0%
AGTTCATAACAAATCAGGAT+GGG - chr1_1:72972405-72972424 Msa0042210:CDS 30.0%
AATGTCACTGAGTTCAATAA+CGG + chr1_1:72972658-72972677 None:intergenic 30.0%
TTGTGGTATAAATCTTGACA+CGG - chr1_1:72972730-72972749 Msa0042210:intron 30.0%
! ACACGGTTTTCTTTTCTAAT+AGG - chr1_1:72972747-72972766 Msa0042210:intron 30.0%
! TTCTAATCTTTTTGCCATTC+TGG - chr1_1:72972825-72972844 Msa0042210:intron 30.0%
! TCTAATCTTTTTGCCATTCT+GGG - chr1_1:72972826-72972845 Msa0042210:intron 30.0%
ATACAGGCATTACATCATAA+GGG + chr1_1:72972873-72972892 None:intergenic 30.0%
TATACAGGCATTACATCATA+AGG + chr1_1:72972874-72972893 None:intergenic 30.0%
TTTCCAGGTATCAAACTTTA+AGG + chr1_1:72972929-72972948 None:intergenic 30.0%
TCCATTAAGTCATTAACATG+TGG - chr1_1:72973077-72973096 Msa0042210:CDS 30.0%
TCCACATGTTAATGACTTAA+TGG + chr1_1:72973081-72973100 None:intergenic 30.0%
!! AAAAAGCATCGACTATTGTT+AGG + chr1_1:72973162-72973181 None:intergenic 30.0%
ACTTTACGTGATAATTTCTG+AGG - chr1_1:72973254-72973273 Msa0042210:intron 30.0%
CTTTACGTGATAATTTCTGA+GGG - chr1_1:72973255-72973274 Msa0042210:intron 30.0%
AATGGCTTATCTTGAAATTG+GGG - chr1_1:72973595-72973614 Msa0042210:intron 30.0%
CAAATTGAAGTCAAATGCAA+TGG + chr1_1:72973756-72973775 None:intergenic 30.0%
TCATTTCAGCAAAAAAAGGT+AGG - chr1_1:72973808-72973827 Msa0042210:intron 30.0%
CATTTCAGCAAAAAAAGGTA+GGG - chr1_1:72973809-72973828 Msa0042210:intron 30.0%
!! GGAAAGTACTATTCTTGATA+GGG - chr1_1:72973830-72973849 Msa0042210:intron 30.0%
! CAGGTAATTTCTAAAGGAAA+CGG - chr1_1:72973872-72973891 Msa0042210:intron 30.0%
TCTATGAATAAACGTTGATG+AGG + chr1_1:72973938-72973957 None:intergenic 30.0%
AGAATTGGATTGTCTTATCA+AGG + chr1_1:72973978-72973997 None:intergenic 30.0%
! GAGAGAGAACAGATTTTTAA+TGG + chr1_1:72974191-72974210 None:intergenic 30.0%
AGCAAACAGTTTCATTCATT+TGG + chr1_1:72974253-72974272 None:intergenic 30.0%
TGTTTGCTTTAATTCTGAGT+TGG - chr1_1:72974265-72974284 Msa0042210:intron 30.0%
TCAAATGGACCCAAAAAAAT+TGG + chr1_1:72974437-72974456 None:intergenic 30.0%
ATTTCTTTCGAGAAATTGAG+AGG + chr1_1:72974471-72974490 None:intergenic 30.0%
TCTCAATTTCTCGAAAGAAA+TGG - chr1_1:72974470-72974489 Msa0042210:intron 30.0%
AATTTCTCGAAAGAAATGGA+GGG - chr1_1:72974474-72974493 Msa0042210:intron 30.0%
! TCATTTGTTGAAAAACTGGA+GGG + chr1_1:72974589-72974608 None:intergenic 30.0%
! TTCATTTGTTGAAAAACTGG+AGG + chr1_1:72974590-72974609 None:intergenic 30.0%
! CTCTTCATTTGTTGAAAAAC+TGG + chr1_1:72974593-72974612 None:intergenic 30.0%
!! CAGTTTTTCAACAAATGAAG+AGG - chr1_1:72974591-72974610 Msa0042210:intron 30.0%
AATTCGCAATTGATGTAAGT+CGG + chr1_1:72974632-72974651 None:intergenic 30.0%
TATATGGATAAATCTGTGCT+TGG - chr1_1:72974727-72974746 Msa0042210:intron 30.0%
ATGGATATTAATGGTAAGGA+TGG + chr1_1:72975056-72975075 None:intergenic 30.0%
! AAGATGATCTTGGACTATTT+TGG - chr1_1:72975128-72975147 Msa0042210:intron 30.0%
CCTTTATCATCTTGTATACT+CGG - chr1_1:72975430-72975449 Msa0042210:CDS 30.0%
! AGCCAATAATACCACTCTTT+TGG + chr1_1:72968647-72968666 None:intergenic 35.0%
! ATTGAAACTTTGGAGAGAAG+GGG + chr1_1:72968675-72968694 None:intergenic 35.0%
! GAATTGAAACTTTGGAGAGA+AGG + chr1_1:72968677-72968696 None:intergenic 35.0%
GAATCATAATGACCCTTATC+AGG - chr1_1:72968760-72968779 Msa0042210:three_prime_UTR 35.0%
! CTTGATCGATTTCATTCTTC+AGG - chr1_1:72968998-72969017 Msa0042210:intron 35.0%
TGCTTTGATTACACTTCTTG+AGG - chr1_1:72969082-72969101 Msa0042210:CDS 35.0%
CAAGTTAGAGTCAATTCTGA+AGG + chr1_1:72969131-72969150 None:intergenic 35.0%
! CAGAATTGACTCTAACTTGA+AGG - chr1_1:72969132-72969151 Msa0042210:intron 35.0%
!!! CATTTTGAAGGTGTTTGTCT+AGG - chr1_1:72969254-72969273 Msa0042210:intron 35.0%
ACTCTTTATCCAAACAAGAG+AGG + chr1_1:72969642-72969661 None:intergenic 35.0%
CTTATTTCCATAAGCTCTTC+AGG + chr1_1:72969786-72969805 None:intergenic 35.0%
ATCAAGGGCTAAACTAATCA+CGG + chr1_1:72969953-72969972 None:intergenic 35.0%
! TTAGCCCTTGATTTTATGAG+TGG - chr1_1:72969961-72969980 Msa0042210:intron 35.0%
ACCACCACTCATAAAATCAA+GGG + chr1_1:72969968-72969987 None:intergenic 35.0%
TGATGAGATATCTTCTACTG+AGG - chr1_1:72970020-72970039 Msa0042210:intron 35.0%
CAATCTGAGAACTTACTATG+AGG + chr1_1:72970298-72970317 None:intergenic 35.0%
!!! TTTTTTTCCTCCTACTAGAG+AGG + chr1_1:72970354-72970373 None:intergenic 35.0%
AAGCAGGATAAAAAGAAACG+AGG + chr1_1:72970618-72970637 None:intergenic 35.0%
ATTCATGACTAGTGACTTAG+CGG - chr1_1:72970730-72970749 Msa0042210:intron 35.0%
CGCCTGATAATAATACTTCT+TGG - chr1_1:72971110-72971129 Msa0042210:intron 35.0%
CAGTATTAATCAAGACAGGA+TGG + chr1_1:72971251-72971270 None:intergenic 35.0%
!! ACTGTGATTTTAGAGGTTTG+AGG - chr1_1:72971267-72971286 Msa0042210:intron 35.0%
TGATGAGAAGAGCAATATTG+CGG + chr1_1:72971310-72971329 None:intergenic 35.0%
TTAAGCACTTCATTCTTGCT+TGG - chr1_1:72971360-72971379 Msa0042210:CDS 35.0%
CATTGTTTCCTTGACAAGTA+GGG + chr1_1:72971403-72971422 None:intergenic 35.0%
TCATTGTTTCCTTGACAAGT+AGG + chr1_1:72971404-72971423 None:intergenic 35.0%
! TATCCTCTTTCATGCTACTT+AGG - chr1_1:72971471-72971490 Msa0042210:intron 35.0%
! ATCCTCTTTCATGCTACTTA+GGG - chr1_1:72971472-72971491 Msa0042210:intron 35.0%
TATCTCTTCAACAGTATCCT+AGG - chr1_1:72971638-72971657 Msa0042210:intron 35.0%
GTATTCACAATTCTATGGAC+TGG - chr1_1:72971682-72971701 Msa0042210:intron 35.0%
TTGTTACAGGGATCAATTTC+TGG + chr1_1:72971802-72971821 None:intergenic 35.0%
ACAATATCTTCTCAACTCAG+TGG - chr1_1:72972051-72972070 Msa0042210:intron 35.0%
!! TGTTGGCTTATCATTCTACT+AGG - chr1_1:72972274-72972293 Msa0042210:intron 35.0%
TAACAAATCAGGATGGGATA+TGG - chr1_1:72972411-72972430 Msa0042210:CDS 35.0%
CACATTAAATGGAAGGATCA+GGG + chr1_1:72972705-72972724 None:intergenic 35.0%
TCACATTAAATGGAAGGATC+AGG + chr1_1:72972706-72972725 None:intergenic 35.0%
! CGGTTTTCTTTTCTAATAGG+TGG - chr1_1:72972750-72972769 Msa0042210:intron 35.0%
TACAGGCATTACATCATAAG+GGG + chr1_1:72972872-72972891 None:intergenic 35.0%
GCACATGCTTATCAAGAAAA+TGG + chr1_1:72972988-72973007 None:intergenic 35.0%
! GTCAGAATTGAAGTACTTAC+AGG - chr1_1:72973281-72973300 Msa0042210:CDS 35.0%
GATATACCATGATTGATGCA+TGG - chr1_1:72973325-72973344 Msa0042210:CDS 35.0%
AGAAAACCATGCATCAATCA+TGG + chr1_1:72973334-72973353 None:intergenic 35.0%
TTCTAGTAACACTTCATCCT+TGG - chr1_1:72973415-72973434 Msa0042210:intron 35.0%
TCGCAAATTTCTATACAAGC+AGG + chr1_1:72973453-72973472 None:intergenic 35.0%
! TTTTGCAATAATTCTGCTCC+AGG + chr1_1:72973521-72973540 None:intergenic 35.0%
CTTATCTTGAAATTGGGGTT+AGG - chr1_1:72973600-72973619 Msa0042210:intron 35.0%
! CTCGAAAATGTGTTTCTAAG+CGG + chr1_1:72973673-72973692 None:intergenic 35.0%
!! GGGAAAGTACTATTCTTGAT+AGG - chr1_1:72973829-72973848 Msa0042210:intron 35.0%
TACTGCCTTGATTAAGATTC+AGG - chr1_1:72973853-72973872 Msa0042210:intron 35.0%
CATTAAAATGTACTAGAGCG+TGG - chr1_1:72974119-72974138 Msa0042210:intron 35.0%
! TGAAACACTTTTCCATGACT+GGG - chr1_1:72974160-72974179 Msa0042210:CDS 35.0%
AAAAATCTGTTCTCTCTCCA+AGG - chr1_1:72974193-72974212 Msa0042210:CDS 35.0%
CAATTTCTCGAAAGAAATGG+AGG - chr1_1:72974473-72974492 Msa0042210:intron 35.0%
GATATTTGCTCAATAACGCA+TGG - chr1_1:72974666-72974685 Msa0042210:intron 35.0%
GACGTTACTACTATAAGTCA+TGG + chr1_1:72974893-72974912 None:intergenic 35.0%
CGGCTAACAAGAACAAAATA+TGG + chr1_1:72975075-72975094 None:intergenic 35.0%
CTGTTGTACTGGGATTTATT+GGG - chr1_1:72975102-72975121 Msa0042210:intron 35.0%
TATTGGGTGTAAGATGATCT+TGG - chr1_1:72975118-72975137 Msa0042210:intron 35.0%
! AAATTTGGTAACTGAACGAG+TGG + chr1_1:72975165-72975184 None:intergenic 35.0%
TCACATATTCTCGTTTGTAC+AGG - chr1_1:72975212-72975231 Msa0042210:intron 35.0%
CAGACTTAATATCACTCCAA+TGG + chr1_1:72975288-72975307 None:intergenic 35.0%
CATTGGAGTGATATTAAGTC+TGG - chr1_1:72975286-72975305 Msa0042210:intron 35.0%
!! GATATTTTCATTTGGGGTGT+GGG + chr1_1:72975399-72975418 None:intergenic 35.0%
CCGAGTATACAAGATGATAA+AGG + chr1_1:72975433-72975452 None:intergenic 35.0%
! TTGAAACTTTGGAGAGAAGG+GGG + chr1_1:72968674-72968693 None:intergenic 40.0%
TTGGCTTCTGTTGTTCACAA+TGG - chr1_1:72968722-72968741 Msa0042210:three_prime_UTR 40.0%
TAATGACCCTTATCAGGATC+AGG - chr1_1:72968766-72968785 Msa0042210:three_prime_UTR 40.0%
AATGACCCTTATCAGGATCA+GGG - chr1_1:72968767-72968786 Msa0042210:three_prime_UTR 40.0%
TGAAACCCTGATCCTGATAA+GGG + chr1_1:72968775-72968794 None:intergenic 40.0%
TTGAAACCCTGATCCTGATA+AGG + chr1_1:72968776-72968795 None:intergenic 40.0%
AGGAAAAGGAAGAGATAGGA+CGG + chr1_1:72968830-72968849 None:intergenic 40.0%
ATGGAGAATACCTGAGGAAA+AGG + chr1_1:72968844-72968863 None:intergenic 40.0%
TTCCATGTCTGTGATAACAG+TGG - chr1_1:72968928-72968947 Msa0042210:CDS 40.0%
ATCCACTGTTATCACAGACA+TGG + chr1_1:72968933-72968952 None:intergenic 40.0%
TGATACATGCAAGTGGAAGA+CGG + chr1_1:72968964-72968983 None:intergenic 40.0%
TAGGAATAAAAGGTGGACCT+TGG + chr1_1:72969592-72969611 None:intergenic 40.0%
! GCTTTTAGTCCTCTCTTGTT+TGG - chr1_1:72969630-72969649 Msa0042210:intron 40.0%
TCAAGGGCTAAACTAATCAC+GGG + chr1_1:72969952-72969971 None:intergenic 40.0%
CACCACCACTCATAAAATCA+AGG + chr1_1:72969969-72969988 None:intergenic 40.0%
!! TGTTAGAGCTGTAGCCTTAT+GGG - chr1_1:72970059-72970078 Msa0042210:intron 40.0%
! AAGGCATCAGAATTCTTTGC+TGG - chr1_1:72970236-72970255 Msa0042210:intron 40.0%
AGGCATCAGAATTCTTTGCT+GGG - chr1_1:72970237-72970256 Msa0042210:intron 40.0%
TGTAGTAGATCCTCTCTAGT+AGG - chr1_1:72970341-72970360 Msa0042210:intron 40.0%
ATGTGGAATGTGATTGGTGA+TGG + chr1_1:72970509-72970528 None:intergenic 40.0%
CACAAAATATTGGTGGGATG+TGG + chr1_1:72970526-72970545 None:intergenic 40.0%
!! CAAAGTGCCAGTTTTGTATC+AGG - chr1_1:72970914-72970933 Msa0042210:CDS 40.0%
TGCATCACCTGATACAAAAC+TGG + chr1_1:72970924-72970943 None:intergenic 40.0%
CAGAATCGTGTACTTTCCTA+TGG - chr1_1:72971065-72971084 Msa0042210:intron 40.0%
GTACTTTCCTATGGTATTGC+TGG - chr1_1:72971074-72971093 Msa0042210:intron 40.0%
TTGAAAACACACCTGAATGG+TGG + chr1_1:72971141-72971160 None:intergenic 40.0%
TTGACAAGTAGGGATGTAGA+AGG + chr1_1:72971393-72971412 None:intergenic 40.0%
TTCTACATCCCTACTTGTCA+AGG - chr1_1:72971392-72971411 Msa0042210:CDS 40.0%
AGCATTCCACAAAGGAACAA+TGG + chr1_1:72972168-72972187 None:intergenic 40.0%
ATTGTTCCTTTGTGGAATGC+TGG - chr1_1:72972167-72972186 Msa0042210:intron 40.0%
TCTAATCCAGCATTCCACAA+AGG + chr1_1:72972176-72972195 None:intergenic 40.0%
AACCATGCTGAATGAAAACC+AGG - chr1_1:72972240-72972259 Msa0042210:intron 40.0%
ACCATGCTGAATGAAAACCA+GGG - chr1_1:72972241-72972260 Msa0042210:intron 40.0%
ACCAGGGGATCATATATTGT+TGG - chr1_1:72972257-72972276 Msa0042210:intron 40.0%
AAATCAGGATGGGATATGGA+TGG - chr1_1:72972415-72972434 Msa0042210:CDS 40.0%
ACTGAGTTCAATAACGGCTA+CGG + chr1_1:72972652-72972671 None:intergenic 40.0%
!!! CTGCAGTTTTTGGTGTAACA+CGG - chr1_1:72972782-72972801 Msa0042210:intron 40.0%
!!! TGCAGTTTTTGGTGTAACAC+GGG - chr1_1:72972783-72972802 Msa0042210:intron 40.0%
GCTCCTTAAAGTTTGATACC+TGG - chr1_1:72972923-72972942 Msa0042210:intron 40.0%
! GTTTTACTAGCAAGCTTTCC+AGG + chr1_1:72972944-72972963 None:intergenic 40.0%
AAGTCATTAACATGTGGAGC+TGG - chr1_1:72973083-72973102 Msa0042210:CDS 40.0%
!!! CACTTCATCCTTGGTGTTTT+TGG - chr1_1:72973424-72973443 Msa0042210:intron 40.0%
GCGACTTCATCCAAAAATAG+TGG - chr1_1:72973469-72973488 Msa0042210:intron 40.0%
TAACTCAACCCTTACCAAAC+CGG - chr1_1:72973625-72973644 Msa0042210:intron 40.0%
! GAAAATGTGTTTCTAAGCGG+TGG + chr1_1:72973670-72973689 None:intergenic 40.0%
ATGGGATCCTACTTAGACAA+AGG + chr1_1:72973737-72973756 None:intergenic 40.0%
! TCAAGGTGTTTCGCTATGTT+AGG + chr1_1:72973961-72973980 None:intergenic 40.0%
! GTGAAACACTTTTCCATGAC+TGG - chr1_1:72974159-72974178 Msa0042210:CDS 40.0%
! GAAACACTTTTCCATGACTG+GGG - chr1_1:72974161-72974180 Msa0042210:CDS 40.0%
! AATTCTGAGTTGGCCTATGT+TGG - chr1_1:72974275-72974294 Msa0042210:intron 40.0%
! AAGGCACTAATTGCATGTTG+GGG + chr1_1:72974304-72974323 None:intergenic 40.0%
! CAAGGCACTAATTGCATGTT+GGG + chr1_1:72974305-72974324 None:intergenic 40.0%
! ACAAGGCACTAATTGCATGT+TGG + chr1_1:72974306-72974325 None:intergenic 40.0%
AGTGCCTTGTCCAATAGTAA+CGG - chr1_1:72974316-72974335 Msa0042210:intron 40.0%
ATTCCTTCGATGCGAAGAAA+CGG + chr1_1:72974360-72974379 None:intergenic 40.0%
ATGTAAGTCGGAGGTGAATA+GGG + chr1_1:72974620-72974639 None:intergenic 40.0%
! TAACGCATGGTCAAAGGTTT+TGG - chr1_1:72974679-72974698 Msa0042210:intron 40.0%
AAATCCCAGTACAACAGCAA+TGG + chr1_1:72975099-72975118 None:intergenic 40.0%
GCTGTTGTACTGGGATTTAT+TGG - chr1_1:72975101-72975120 Msa0042210:intron 40.0%
TGTGAGAAGTTCAAGTACAG+TGG + chr1_1:72975197-72975216 None:intergenic 40.0%
TACAGGATTCCATGTCTCAA+CGG - chr1_1:72975229-72975248 Msa0042210:intron 40.0%
GTGGGTAGAATTGGATTTCT+TGG + chr1_1:72975381-72975400 None:intergenic 40.0%
!! GGATATTTTCATTTGGGGTG+TGG + chr1_1:72975400-72975419 None:intergenic 40.0%
ATTAGCCAAATAGCCAACTG+AGG - chr1_1:72975483-72975502 Msa0042210:exon 40.0%
! GAAGTGGAGTGTAGAGGTTT+TGG + chr1_1:72968802-72968821 None:intergenic 45.0%
CCTGAGGAAAAGGAAGAGAT+AGG + chr1_1:72968834-72968853 None:intergenic 45.0%
! CCTATCTCTTCCTTTTCCTC+AGG - chr1_1:72968831-72968850 Msa0042210:three_prime_UTR 45.0%
AGAGAGATGGAGAATACCTG+AGG + chr1_1:72968850-72968869 None:intergenic 45.0%
! AAGCTAGCCTGAAGAGCTTA+TGG - chr1_1:72969776-72969795 Msa0042210:intron 45.0%
! GCCCTTGATTTTATGAGTGG+TGG - chr1_1:72969964-72969983 Msa0042210:intron 45.0%
! CTGTTAGAGCTGTAGCCTTA+TGG - chr1_1:72970058-72970077 Msa0042210:intron 45.0%
CAGAGATTTACCCACCCATA+AGG + chr1_1:72970076-72970095 None:intergenic 45.0%
ACCAACACCAAATGCTACTG+CGG + chr1_1:72970192-72970211 None:intergenic 45.0%
!! AGTAGCATTTGGTGTTGGTG+TGG - chr1_1:72970193-72970212 Msa0042210:intron 45.0%
!! GTAGCATTTGGTGTTGGTGT+GGG - chr1_1:72970194-72970213 Msa0042210:intron 45.0%
! GTTGGTGTGGGTTTTACAGA+AGG - chr1_1:72970206-72970225 Msa0042210:intron 45.0%
AGTAGATCCTCTCTAGTAGG+AGG - chr1_1:72970344-72970363 Msa0042210:intron 45.0%
!! ATGTGATTGGTGATGGATGG+TGG + chr1_1:72970502-72970521 None:intergenic 45.0%
!! GGAATGTGATTGGTGATGGA+TGG + chr1_1:72970505-72970524 None:intergenic 45.0%
TCCTGCTTCTCCTGTGAATA+TGG - chr1_1:72970630-72970649 Msa0042210:intron 45.0%
TGACTAGTGACTTAGCGGTT+TGG - chr1_1:72970735-72970754 Msa0042210:intron 45.0%
ATTGGAGCAAAGTCTCTCAG+TGG - chr1_1:72970854-72970873 Msa0042210:intron 45.0%
AACTGCACCAGCAATACCAT+AGG + chr1_1:72971084-72971103 None:intergenic 45.0%
TTGAGGCAGTCAACCTTCTA+TGG - chr1_1:72971284-72971303 Msa0042210:intron 45.0%
AGCAATATTGCGGCCATAGA+AGG + chr1_1:72971300-72971319 None:intergenic 45.0%
AGCCCTAAGTAGCATGAAAG+AGG + chr1_1:72971477-72971496 None:intergenic 45.0%
! TTCATGCTACTTAGGGCTTG+AGG - chr1_1:72971479-72971498 Msa0042210:intron 45.0%
ATGAAGGAATGAGAGTCACG+AGG - chr1_1:72971532-72971551 Msa0042210:CDS 45.0%
GAGTCACGAGGATCAAACTT+TGG - chr1_1:72971544-72971563 Msa0042210:CDS 45.0%
TCAACTCAGTGGTTGTACCA+AGG - chr1_1:72972062-72972081 Msa0042210:intron 45.0%
CAACTCAGTGGTTGTACCAA+GGG - chr1_1:72972063-72972082 Msa0042210:intron 45.0%
AACTCAGTGGTTGTACCAAG+GGG - chr1_1:72972064-72972083 Msa0042210:intron 45.0%
GTTGGTCCATTGTTCCTTTG+TGG - chr1_1:72972159-72972178 Msa0042210:intron 45.0%
CCATGCTGAATGAAAACCAG+GGG - chr1_1:72972242-72972261 Msa0042210:intron 45.0%
GCCAACAATATATGATCCCC+TGG + chr1_1:72972261-72972280 None:intergenic 45.0%
! AGGGATCAAACATTTTGGGC+AGG - chr1_1:72972608-72972627 Msa0042210:intron 45.0%
TACGGTAAGAAGCAAAGGTG+TGG + chr1_1:72972634-72972653 None:intergenic 45.0%
! GACTCGATACCTGCAGTTTT+TGG - chr1_1:72972772-72972791 Msa0042210:intron 45.0%
CGTGTTACACCAAAAACTGC+AGG + chr1_1:72972784-72972803 None:intergenic 45.0%
GCAAGATAGCTTACCCAGAA+TGG + chr1_1:72972842-72972861 None:intergenic 45.0%
TCATTAACATGTGGAGCTGG+AGG - chr1_1:72973086-72973105 Msa0042210:CDS 45.0%
!!! AAACTCACGTTGTTTTGGCC+TGG - chr1_1:72973500-72973519 Msa0042210:intron 45.0%
! GGTTTGGTAAGGGTTGAGTT+AGG + chr1_1:72973626-72973645 None:intergenic 45.0%
!! CTTACAAGCCGGTTTGGTAA+GGG + chr1_1:72973636-72973655 None:intergenic 45.0%
AGCTATATCTCATCCAGCGA+GGG - chr1_1:72973691-72973710 Msa0042210:intron 45.0%
AAATGTACTAGAGCGTGGAC+CGG - chr1_1:72974124-72974143 Msa0042210:intron 45.0%
TTAATGGCTTACCCCAGTCA+TGG + chr1_1:72974175-72974194 None:intergenic 45.0%
GTGCCTTGTCCAATAGTAAC+GGG - chr1_1:72974317-72974336 Msa0042210:intron 45.0%
TGCCTTGTCCAATAGTAACG+GGG - chr1_1:72974318-72974337 Msa0042210:intron 45.0%
TTTGGGTCCATTTGACGAGT+CGG - chr1_1:72974442-72974461 Msa0042210:intron 45.0%
GATGTAAGTCGGAGGTGAAT+AGG + chr1_1:72974621-72974640 None:intergenic 45.0%
TCGCAATTGATGTAAGTCGG+AGG + chr1_1:72974629-72974648 None:intergenic 45.0%
GCTCAATAACGCATGGTCAA+AGG - chr1_1:72974673-72974692 Msa0042210:intron 45.0%
! GTAGCCTCTAGTCTTTCCAT+TGG - chr1_1:72975269-72975288 Msa0042210:intron 45.0%
CACTCCAATGGAAAGACTAG+AGG + chr1_1:72975276-72975295 None:intergenic 45.0%
GAGCTCAACTCATTCTGAGT+TGG + chr1_1:72975337-72975356 None:intergenic 45.0%
! ATTTGGGGTGTGGGTAGAAT+TGG + chr1_1:72975390-72975409 None:intergenic 45.0%
TCTACAAAGGGTTCCTCAGT+TGG + chr1_1:72975499-72975518 None:intergenic 45.0%
ACCCTTTGTAGACTGTGCTA+TGG - chr1_1:72975507-72975526 Msa0042210:five_prime_UTR 45.0%
GCCATAGCACAGTCTACAAA+GGG + chr1_1:72975511-72975530 None:intergenic 45.0%
AGCCATAGCACAGTCTACAA+AGG + chr1_1:72975512-72975531 None:intergenic 45.0%
!!! AAAAAAAAAAAATAGATTTT+GGG + chr1_1:72969352-72969371 None:intergenic 5.0%
!!! TTAAAAATCATTTTTTTAAA+AGG - chr1_1:72969410-72969429 Msa0042210:intron 5.0%
!! AAAAAAATAAAAAAATTTAC+AGG + chr1_1:72969559-72969578 None:intergenic 5.0%
!! TTAAATAAAATGAAATTATT+AGG + chr1_1:72974819-72974838 None:intergenic 5.0%
CTGGCGCAAAACCAAAAGAG+TGG - chr1_1:72968633-72968652 Msa0042210:three_prime_UTR 50.0%
GTGAAGGAAGTGGAGTGTAG+AGG + chr1_1:72968808-72968827 None:intergenic 50.0%
AGATAGGACGGTGAAGGAAG+TGG + chr1_1:72968818-72968837 None:intergenic 50.0%
AGGAAGAGATAGGACGGTGA+AGG + chr1_1:72968824-72968843 None:intergenic 50.0%
AGGAGAGAGAGAGAGAGAGA+TGG + chr1_1:72968863-72968882 None:intergenic 50.0%
!! TAGAGCTGTAGCCTTATGGG+TGG - chr1_1:72970062-72970081 Msa0042210:intron 50.0%
!! AGAGCTGTAGCCTTATGGGT+GGG - chr1_1:72970063-72970082 Msa0042210:intron 50.0%
GGTGGGATGTGGAATGTGAT+TGG + chr1_1:72970515-72970534 None:intergenic 50.0%
GCCATATTCACAGGAGAAGC+AGG + chr1_1:72970634-72970653 None:intergenic 50.0%
TCTTGGAACAGCCACCATTC+AGG - chr1_1:72971127-72971146 Msa0042210:intron 50.0%
ACTCAGTGGTTGTACCAAGG+GGG - chr1_1:72972065-72972084 Msa0042210:intron 50.0%
! TCATTGGTTGCATACCCCCT+TGG + chr1_1:72972082-72972101 None:intergenic 50.0%
!! CCCCTGGTTTTCATTCAGCA+TGG + chr1_1:72972245-72972264 None:intergenic 50.0%
ATTCTACTAGGCATGTGCCG+TGG - chr1_1:72972286-72972305 Msa0042210:intron 50.0%
ACGGCTACGGTAAGAAGCAA+AGG + chr1_1:72972639-72972658 None:intergenic 50.0%
GCAGGAAGCCAAAAACACCA+AGG + chr1_1:72973435-72973454 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTGGTA+AGG + chr1_1:72973637-72973656 None:intergenic 50.0%
!! CCTTACCAAACCGGCTTGTA+AGG - chr1_1:72973634-72973653 Msa0042210:intron 50.0%
!! TACCAAACCGGCTTGTAAGG+TGG - chr1_1:72973637-72973656 Msa0042210:intron 50.0%
!! ACCAAACCGGCTTGTAAGGT+GGG - chr1_1:72973638-72973657 Msa0042210:intron 50.0%
GAGCTATATCTCATCCAGCG+AGG - chr1_1:72973690-72973709 Msa0042210:intron 50.0%
GTTGTTACAAAGTCCCTCGC+TGG + chr1_1:72973707-72973726 None:intergenic 50.0%
GTTTCACCCTTGCATTGCAC+CGG + chr1_1:72974146-72974165 None:intergenic 50.0%
GGAGCTACTTAGTTACCCCA+GGG + chr1_1:72974232-72974251 None:intergenic 50.0%
TGGAGCTACTTAGTTACCCC+AGG + chr1_1:72974233-72974252 None:intergenic 50.0%
! TCTGAGTTGGCCTATGTTGG+CGG - chr1_1:72974278-72974297 Msa0042210:intron 50.0%
GCCTTGTCCAATAGTAACGG+GGG - chr1_1:72974319-72974338 Msa0042210:intron 50.0%
ACCCCCGTTACTATTGGACA+AGG + chr1_1:72974323-72974342 None:intergenic 50.0%
CTACCGTTTCTTCGCATCGA+AGG - chr1_1:72974354-72974373 Msa0042210:intron 50.0%
TTGGGTCCATTTGACGAGTC+GGG - chr1_1:72974443-72974462 Msa0042210:intron 50.0%
CCCAGTACAACAGCAATGGA+CGG + chr1_1:72975095-72975114 None:intergenic 50.0%
! CCGTCCATTGCTGTTGTACT+GGG - chr1_1:72975092-72975111 Msa0042210:intron 50.0%
AGGATTCCATGTCTCAACGG+AGG - chr1_1:72975232-72975251 Msa0042210:intron 50.0%
GGGTTCCTCAGTTGGCTATT+TGG + chr1_1:72975491-72975510 None:intergenic 50.0%
GTTTGCGCCGCAGTAGCATT+TGG - chr1_1:72970182-72970201 Msa0042210:intron 55.0%
!! GCCGCAGTAGCATTTGGTGT+TGG - chr1_1:72970188-72970207 Msa0042210:intron 55.0%
GCTACTTAGGGCTTGAGGCA+TGG - chr1_1:72971484-72971503 Msa0042210:intron 55.0%
!! CCAAACCGGCTTGTAAGGTG+GGG - chr1_1:72973639-72973658 Msa0042210:intron 55.0%
!! CAAACCGGCTTGTAAGGTGG+GGG - chr1_1:72973640-72973659 Msa0042210:intron 55.0%
ATAGCCCCCACCTTACAAGC+CGG + chr1_1:72973647-72973666 None:intergenic 55.0%
!! AGGGCTCTAGAGGATCTCCT+TGG + chr1_1:72974213-72974232 None:intergenic 55.0%
!! AAGGAGATCCTCTAGAGCCC+TGG - chr1_1:72974212-72974231 Msa0042210:CDS 55.0%
!! AGGAGATCCTCTAGAGCCCT+GGG - chr1_1:72974213-72974232 Msa0042210:CDS 55.0%
! TAGTTACCCCAGGGCTCTAG+AGG + chr1_1:72974223-72974242 None:intergenic 55.0%
!! AGAGGCACCCCCGTTACTAT+TGG + chr1_1:72974329-72974348 None:intergenic 55.0%
GAAGAAACGGTAGTGCGCAG+AGG + chr1_1:72974347-72974366 None:intergenic 55.0%
! GAGGATCCCGACTCGTCAAA+TGG + chr1_1:72974452-72974471 None:intergenic 55.0%
! GCCGTCCATTGCTGTTGTAC+TGG - chr1_1:72975091-72975110 Msa0042210:intron 55.0%
GAGATGCCTCCGTTGAGACA+TGG + chr1_1:72975241-72975260 None:intergenic 55.0%
!! GTCTCAACGGAGGCATCTCT+TGG - chr1_1:72975242-72975261 Msa0042210:intron 55.0%
CCCCACCTTACAAGCCGGTT+TGG + chr1_1:72973642-72973661 None:intergenic 60.0%
CGTGGACCGGTGCAATGCAA+GGG - chr1_1:72974137-72974156 Msa0042210:CDS 60.0%
!! GGAGATCCTCTAGAGCCCTG+GGG - chr1_1:72974214-72974233 Msa0042210:CDS 60.0%
CATGTTGGGGCCGCCAACAT+AGG + chr1_1:72974291-72974310 None:intergenic 60.0%
GCGTGGACCGGTGCAATGCA+AGG - chr1_1:72974136-72974155 Msa0042210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72968607 72975600 72968607 ID=Msa0042210;Name=Msa0042210
chr1_1 mRNA 72968607 72975600 72968607 ID=Msa0042210-mRNA-1;Parent=Msa0042210;Name=Msa0042210-mRNA-1;_AED=0.16;_eAED=0.16;_QI=109|0.81|0.91|1|1|1|12|275|326
chr1_1 exon 72968607 72968973 72968607 ID=Msa0042210-mRNA-1:exon:24306;Parent=Msa0042210-mRNA-1
chr1_1 exon 72969058 72969115 72969058 ID=Msa0042210-mRNA-1:exon:24305;Parent=Msa0042210-mRNA-1
chr1_1 exon 72970905 72970963 72970905 ID=Msa0042210-mRNA-1:exon:24304;Parent=Msa0042210-mRNA-1
chr1_1 exon 72971360 72971438 72971360 ID=Msa0042210-mRNA-1:exon:24303;Parent=Msa0042210-mRNA-1
chr1_1 exon 72971521 72971577 72971521 ID=Msa0042210-mRNA-1:exon:24302;Parent=Msa0042210-mRNA-1
chr1_1 exon 72971771 72971820 72971771 ID=Msa0042210-mRNA-1:exon:24301;Parent=Msa0042210-mRNA-1
chr1_1 exon 72972386 72972467 72972386 ID=Msa0042210-mRNA-1:exon:24300;Parent=Msa0042210-mRNA-1
chr1_1 exon 72973059 72973139 72973059 ID=Msa0042210-mRNA-1:exon:24299;Parent=Msa0042210-mRNA-1
chr1_1 exon 72973272 72973359 72973272 ID=Msa0042210-mRNA-1:exon:24298;Parent=Msa0042210-mRNA-1
chr1_1 exon 72973949 72974025 72973949 ID=Msa0042210-mRNA-1:exon:24297;Parent=Msa0042210-mRNA-1
chr1_1 exon 72974127 72974247 72974127 ID=Msa0042210-mRNA-1:exon:24296;Parent=Msa0042210-mRNA-1
chr1_1 exon 72975355 72975600 72975355 ID=Msa0042210-mRNA-1:exon:24295;Parent=Msa0042210-mRNA-1
chr1_1 five_prime_UTR 72975492 72975600 72975492 ID=Msa0042210-mRNA-1:five_prime_utr;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72975355 72975491 72975355 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72974127 72974247 72974127 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72973949 72974025 72973949 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72973272 72973359 72973272 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72973059 72973139 72973059 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72972386 72972467 72972386 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72971771 72971820 72971771 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72971521 72971577 72971521 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72971360 72971438 72971360 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72970905 72970963 72970905 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72969058 72969115 72969058 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 CDS 72968882 72968973 72968882 ID=Msa0042210-mRNA-1:cds;Parent=Msa0042210-mRNA-1
chr1_1 three_prime_UTR 72968607 72968881 72968607 ID=Msa0042210-mRNA-1:three_prime_utr;Parent=Msa0042210-mRNA-1
Gene Sequence

>Msa0042210

ATGAGTTTGGCTTCTGTTGTTCACAATGGCATCCAAACTCCATTGAATCATAATGACCCTTATCAGGATCAGGGTTTCAAATTCCAAAACCTCTACACTCCACTTCCTTCACCGTCCTATCTCTTCCTTTTCCTCAGTTTAGCCCTTGATTTTATGAGTGGTGGTGCAGATGTGAAGAGAATTACTGCTCAACGAGATGATGAGATATCTTCTACTGAGGAGTCACAGAGTTCTGCTGTTAGAGCTGTAGCCTTATGGGTTTGCGCCGCAGTAGCATTTGGTGTTGGTGTGGGTTTTACAGAAGGTTATGAAAAGGCATCAGAATTCTTTGCTGGATACATATTGGAGCAAAGTCTCTCAGTGGATAATCTCTTTGTCTTTGTTCTAATATTCAAATACTTCAAAGTGCCAGTTTTGTATCAGAATCGTGTACTTTCCTATGGTATTGCTGGTGCAGTTGTTTTTCGCCTGATAATAATACTTCTTGGAACAGCCACCATTCAGCTATTTGCTAGTGAAGAAGAAGAGTCAGACTTATCTGACAACTTTTTGGTGAAGACATGCCAGAAATTGATCCCTGTAACAACATATTATGATGGAAACAAGTTCATAACAAATCAGGATGGGATATGGATGGCCACACCTTTGCTTCTTACCGTAGCCGTTATTGAACTCAGTGACATTGCATTTGCAGTGGACTCGATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTATAGTGTTTTCTTCTAATCTTTTTGCCATTCTGGGTTTGAGGTCACTTTACGTGATAATTTCTGAGGGTATGTCAGAATTGAAGTACTTACAGCCGTCCATTGCTGTTGTACTGGGATTTATTGGGTGTAAGATGATCTTGGACTATTTTGGATTCCATGTCTCAACGGAGGCATCTCTTGGTTTTGTAGCCTCTAGTCTTTCCATTGGAGTGATATTAAGTCTGGCTAACAAATCTGACTAG

Protein sequence

>Msa0042210

MSLASVVHNGIQTPLNHNDPYQDQGFKFQNLYTPLPSPSYLFLFLSLALDFMSGGADVKRITAQRDDEISSTEESQSSAVRAVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQNRVLSYGIAGAVVFRLIIILLGTATIQLFASEEEESDLSDNFLVKTCQKLIPVTTYYDGNKFITNQDGIWMATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLYVIISEGMSELKYLQPSIAVVLGFIGCKMILDYFGFHVSTEASLGFVASSLSIGVILSLANKSD*