AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708360 MtrunA17_Chr4g0067881 99.338 453 3 0 1 453 211 663 0.0 937
Msa0708360 MtrunA17_Chr8g0391331 99.117 453 4 0 1 453 213 665 0.0 935
Msa0708360 MtrunA17_Chr1g0211491 89.783 460 22 2 1 453 168 609 0.0 835
Msa0708360 MtrunA17_Chr4g0025921 82.637 455 40 5 1 453 199 616 0.0 752
Msa0708360 MtrunA17_Chr4g0025931 80.879 455 47 5 1 452 185 602 0.0 731
Msa0708360 MtrunA17_Chr8g0335841 31.148 122 83 1 8 129 233 353 2.05e-12 69.3
Msa0708360 MtrunA17_Chr4g0072161 25.000 120 89 1 8 127 136 254 9.33e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708360 AT4G33760.2 80.132 453 86 1 1 453 79 527 0.0 780
Msa0708360 AT4G33760.1 80.132 453 86 1 1 453 215 663 0.0 779

Find 125 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAGTTATCTAGATAAA+AGG 0.217281 4_4:-81909389 Msa0708360:three_prime_UTR
GTTTATGTGGCTCATGAATT+AGG 0.251279 4_4:-81912558 Msa0708360:CDS
TATGGAAATGTAGGTTTATA+TGG 0.262810 4_4:+81909550 None:intergenic
TTCTGCTTTAGTATCAAGTA+TGG 0.291029 4_4:-81912694 Msa0708360:CDS
GCAAGGTTGTTCATGTCTTC+AGG 0.297939 4_4:+81912215 None:intergenic
TCGCTCCTCCTGTGAGTAAT+AGG 0.308069 4_4:+81909446 None:intergenic
TTTCAGGCTGAAGCTAAGTT+TGG 0.318198 4_4:-81910584 Msa0708360:intron
TCTAGATCAAATCTGGTATC+TGG 0.318832 4_4:+81913226 None:intergenic
TTGTTCATGTCTTCAGGATT+TGG 0.324171 4_4:+81912221 None:intergenic
AAATAATCCCGGGCACCTTC+TGG 0.327607 4_4:+81915094 None:intergenic
TTTCTCAGGGTCTTCCTTCA+AGG 0.336742 4_4:-81913002 Msa0708360:CDS
CAACTAGAGAGGATTTATTA+AGG 0.343846 4_4:-81912665 Msa0708360:CDS
GGTATCGATATCTTGATCTA+AGG 0.345062 4_4:-81915349 Msa0708360:five_prime_UTR
TGAAAGATCTTTCAGCTGTT+GGG 0.361402 4_4:+81909694 None:intergenic
AAAGTAATTTGTGTACCTTC+TGG 0.364160 4_4:-81912944 Msa0708360:CDS
AATGCAGGAGGCATAGCTTT+TGG 0.364469 4_4:-81909833 Msa0708360:intron
CTAAATACCTGGATTCTTGA+TGG 0.371339 4_4:+81915067 None:intergenic
CGACATACAACAAAAGGTTT+TGG 0.374977 4_4:-81912016 Msa0708360:CDS
GCTATTTAAGCAAATGCTAA+TGG 0.395004 4_4:-81914410 Msa0708360:CDS
GTGATACAATATGGAAATGT+AGG 0.397252 4_4:+81909541 None:intergenic
AGATTGGTTATGTTGCTAGC+TGG 0.406190 4_4:-81909803 Msa0708360:CDS
GATTGGTTATGTTGCTAGCT+GGG 0.406860 4_4:-81909802 Msa0708360:CDS
TCTCGTCAATAAATTACAAT+TGG 0.418869 4_4:+81915411 None:intergenic
TGCTTCAGCATATGTAAGCC+TGG 0.420918 4_4:+81913273 None:intergenic
GCTGAAGCAATGAATAGATA+TGG 0.425444 4_4:-81913259 Msa0708360:CDS
AATCCACAAAATTGAATGTC+TGG 0.427154 4_4:+81912424 None:intergenic
TAAACGCGACATACAACAAA+AGG 0.428071 4_4:-81912022 Msa0708360:CDS
TGAGTTCACACAACTAGATA+TGG 0.428133 4_4:-81913742 Msa0708360:CDS
TTGAAAGATCTTTCAGCTGT+TGG 0.431611 4_4:+81909693 None:intergenic
CTTTCAATCACTACATAGAT+AGG 0.431616 4_4:-81909677 Msa0708360:exon
TTAAATAGCTGAGGGCTTTG+TGG 0.433840 4_4:+81914424 None:intergenic
TAGCTGGGGCTAATTCAATC+AGG 0.434319 4_4:-81909787 Msa0708360:CDS
CCTTGCATCGGCTCGTGCAT+TGG 0.439535 4_4:-81912198 Msa0708360:CDS
GTAAGCCTGGGGAAAGGGTT+TGG 0.441264 4_4:+81913286 None:intergenic
GAATCATTCCACTCAAACAT+TGG 0.443454 4_4:+81912392 None:intergenic
TTATTAAGGCGATGCTCTGC+AGG 0.444994 4_4:-81912651 Msa0708360:CDS
AATGTTTGAGTGGAATGATT+CGG 0.449218 4_4:-81912390 Msa0708360:CDS
TTATACTTTGTCAGATTGGC+GGG 0.451733 4_4:-81912062 Msa0708360:intron
TACAACGAAGCACACAAATC+TGG 0.457051 4_4:-81912866 Msa0708360:CDS
TTTCTCAAGATCACGGAGAA+TGG 0.463469 4_4:-81912827 Msa0708360:intron
TCTTAAGAAACCTGGTGCAC+AGG 0.464845 4_4:-81912897 Msa0708360:CDS
AAATTGTAATCAAGTCCAAC+TGG 0.464900 4_4:+81909475 None:intergenic
AAGCAAATGCTAATGGTAGC+TGG 0.467850 4_4:-81914403 Msa0708360:CDS
GAGAAGTTATCTAGATAAAA+GGG 0.469559 4_4:-81909388 Msa0708360:three_prime_UTR
CATATGTAAGCCTGGGGAAA+GGG 0.478597 4_4:+81913281 None:intergenic
CTTATGACATGGTTTACAAT+GGG 0.479877 4_4:-81912175 Msa0708360:CDS
GATCCACACCAGAAGGTGCC+CGG 0.482589 4_4:-81915102 Msa0708360:CDS
CGTCAATAAATTACAATTGG+AGG 0.483575 4_4:+81915414 None:intergenic
TTTAGTTCCATCAAGAATCC+AGG 0.490512 4_4:-81915074 Msa0708360:intron
AGCAATGAATAGATATGGTT+CGG 0.498070 4_4:-81913254 Msa0708360:CDS
GAAAGATCTTTCAGCTGTTG+GGG 0.499570 4_4:+81909695 None:intergenic
TTCTTGAAGCTCTTGACATG+GGG 0.505034 4_4:-81910556 Msa0708360:CDS
TAAATACCACCCTGTGCACC+AGG 0.505577 4_4:+81912887 None:intergenic
GCACACAAATCTGGTGCAAA+GGG 0.506073 4_4:-81912857 Msa0708360:CDS
TTCTCTGATTCCTTGGAGTG+TGG 0.517839 4_4:-81912977 Msa0708360:CDS
GGAGACTGTAGGCATCTCAA+TGG 0.520526 4_4:-81911995 Msa0708360:CDS
GGAATCAGAGAAAACCTTGA+AGG 0.521670 4_4:+81912988 None:intergenic
TTTATCTAGATAACTTCTCA+TGG 0.522118 4_4:+81909392 None:intergenic
TCAGGATTTGGTGCAGTGAA+AGG 0.522281 4_4:+81912233 None:intergenic
TAATGAAGAGTTGATCAGAA+AGG 0.523027 4_4:-81913682 Msa0708360:intron
TCGTGCATTGGCTTATGACA+TGG 0.525618 4_4:-81912186 Msa0708360:CDS
ATTATACTTTGTCAGATTGG+CGG 0.527189 4_4:-81912063 Msa0708360:intron
GGTGTGGATCTTGACAGTAT+TGG 0.527300 4_4:+81915115 None:intergenic
TTCTCCGTGATCTTGAGAAA+AGG 0.528267 4_4:+81912830 None:intergenic
AGAGACAACATATCCTCTAA+AGG 0.530071 4_4:+81913705 None:intergenic
AGCATTTGCTTAAATAGCTG+AGG 0.531601 4_4:+81914415 None:intergenic
AGATCGTCTTAGAGTTTATG+TGG 0.532962 4_4:-81912571 Msa0708360:CDS
GCATATGTAAGCCTGGGGAA+AGG 0.533395 4_4:+81913280 None:intergenic
GCTTCAGCATATGTAAGCCT+GGG 0.534696 4_4:+81913274 None:intergenic
GCTTATGACATGGTTTACAA+TGG 0.535736 4_4:-81912176 Msa0708360:CDS
AGCACACAAATCTGGTGCAA+AGG 0.540341 4_4:-81912858 Msa0708360:CDS
CTTCTTGAAGCTCTTGACAT+GGG 0.540430 4_4:-81910557 Msa0708360:CDS
AATTCAGTTCTTAAGAAACC+TGG 0.540659 4_4:-81912905 Msa0708360:CDS
TGTAGGCATCTCAATGGAGC+AGG 0.544534 4_4:-81911989 Msa0708360:intron
TTGATGGAACTAAATAATCC+CGG 0.544592 4_4:+81915083 None:intergenic
TTTCCGCTCCTATTACTCAC+AGG 0.547464 4_4:-81909454 Msa0708360:three_prime_UTR
TCTGATTCCTTGGAGTGTGG+TGG 0.548275 4_4:-81912974 Msa0708360:CDS
AATTACCAAACCCTTTCCCC+AGG 0.550475 4_4:-81913291 Msa0708360:CDS
GCAAATAAAATCAGATCACT+TGG 0.551349 4_4:+81912627 None:intergenic
TAGCTGAGGGCTTTGTGGCA+AGG 0.556212 4_4:+81914429 None:intergenic
ATAAATATTATCAAGTAGCA+AGG 0.559397 4_4:-81914375 Msa0708360:intron
CTTAAGAAACCTGGTGCACA+GGG 0.560030 4_4:-81912896 Msa0708360:CDS
GCATTTGCTTAAATAGCTGA+GGG 0.564155 4_4:+81914416 None:intergenic
ATCCCGGGCACCTTCTGGTG+TGG 0.564930 4_4:+81915099 None:intergenic
ATCCACACCAGAAGGTGCCC+GGG 0.566710 4_4:-81915101 Msa0708360:CDS
CCGACTTTCCAATGTTTGAG+TGG 0.567755 4_4:-81912400 Msa0708360:CDS
CCAATGCACGAGCCGATGCA+AGG 0.567886 4_4:+81912198 None:intergenic
CCACTCAAACATTGGAAAGT+CGG 0.571037 4_4:+81912400 None:intergenic
CAGCTGTTGGGGATCCACCT+CGG 0.573724 4_4:+81909706 None:intergenic
ATATCTAGTTGTGTGAACTC+AGG 0.578660 4_4:+81913744 None:intergenic
ATACTTTGTCAGATTGGCGG+GGG 0.581028 4_4:-81912060 Msa0708360:intron
TGACATGGTTTACAATGGGG+TGG 0.585116 4_4:-81912171 Msa0708360:CDS
CATGGTTTACAATGGGGTGG+AGG 0.588103 4_4:-81912168 Msa0708360:intron
AATAACACCACCACACTCCA+AGG 0.592452 4_4:+81912967 None:intergenic
TCTTCTTGAAGCTCTTGACA+TGG 0.595100 4_4:-81910558 Msa0708360:CDS
AGTGGAATGATTCGGAGCAG+AGG 0.597352 4_4:-81912382 Msa0708360:CDS
CCTCGGAAGGTGATCTCGTG+AGG 0.598148 4_4:+81909723 None:intergenic
CTCACAGGAGGAGCGAGTGG+TGG 0.600123 4_4:-81909439 Msa0708360:three_prime_UTR
CTGTCAAGATCCACACCAGA+AGG 0.603413 4_4:-81915109 Msa0708360:CDS
TGTTGGGGATCCACCTCGGA+AGG 0.606271 4_4:+81909710 None:intergenic
CCGCTCCTATTACTCACAGG+AGG 0.606799 4_4:-81909451 Msa0708360:three_prime_UTR
ATTGGTTATGTTGCTAGCTG+GGG 0.606846 4_4:-81909801 Msa0708360:CDS
CACGAGATCACCTTCCGAGG+TGG 0.609144 4_4:-81909720 Msa0708360:CDS
AGCTGGGGCTAATTCAATCA+GGG 0.612567 4_4:-81909786 Msa0708360:CDS
TGATGGAACTAAATAATCCC+GGG 0.612782 4_4:+81915084 None:intergenic
ATCGATATCTTGATCTAAGG+AGG 0.613730 4_4:-81915346 Msa0708360:five_prime_UTR
TCTTGAAGCTCTTGACATGG+GGG 0.620703 4_4:-81910555 Msa0708360:CDS
TATGGATTCTGCAACTAGAG+AGG 0.622469 4_4:-81912676 Msa0708360:CDS
TATACTTTGTCAGATTGGCG+GGG 0.624951 4_4:-81912061 Msa0708360:intron
CATGTTGCTGCGGCATAATG+TGG 0.628032 4_4:-81915306 Msa0708360:CDS
TGATTCGGAGCAGAGGCTTG+AGG 0.628865 4_4:-81912375 Msa0708360:intron
CACACAACTAGATATGGAGA+TGG 0.630880 4_4:-81913736 Msa0708360:CDS
AGACATGAACAACCTTGCAT+CGG 0.632479 4_4:-81912210 Msa0708360:CDS
TTACTCACAGGAGGAGCGAG+TGG 0.639121 4_4:-81909442 Msa0708360:three_prime_UTR
CTCGGAAGGTGATCTCGTGA+GGG 0.643918 4_4:+81909724 None:intergenic
TTAGAAGACTTACCATGTGG+CGG 0.647061 4_4:+81910530 None:intergenic
CCTCACGAGATCACCTTCCG+AGG 0.653984 4_4:-81909723 Msa0708360:CDS
TACTTTGTCAGATTGGCGGG+GGG 0.661761 4_4:-81912059 Msa0708360:intron
GATCAAATCTGGTATCTGGA+CGG 0.664712 4_4:+81913230 None:intergenic
TGAATTCTAACATGTTGCTG+CGG 0.674898 4_4:-81915316 Msa0708360:CDS
AGATATCTAGAAGACATACA+TGG 0.678657 4_4:-81915269 Msa0708360:CDS
CTTCAGCATATGTAAGCCTG+GGG 0.689625 4_4:+81913275 None:intergenic
AAGAAACCTGGTGCACAGGG+TGG 0.690711 4_4:-81912893 Msa0708360:CDS
CCTCCTGTGAGTAATAGGAG+CGG 0.714183 4_4:+81909451 None:intergenic
TTATGACATGGTTTACAATG+GGG 0.724188 4_4:-81912174 Msa0708360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTATTTTAT+TGG - chr4_4:81910273-81910292 Msa0708360:intron 0.0%
!!! TTTATTTTATTTTATTGGAT+TGG - chr4_4:81910278-81910297 Msa0708360:intron 10.0%
!!! GTATAATATTCTTTTATTTT+TGG - chr4_4:81910513-81910532 Msa0708360:intron 10.0%
!!! GATTATTTTTTTCATAAAAA+AGG - chr4_4:81910746-81910765 Msa0708360:intron 10.0%
!! TTATAACATAAAAAAGATAA+AGG - chr4_4:81910786-81910805 Msa0708360:intron 10.0%
!!! TTTTCATTATTCTTAATTAT+GGG - chr4_4:81912589-81912608 Msa0708360:CDS 10.0%
!!! TTTTCTTGTTTTTAATAAAA+TGG + chr4_4:81913168-81913187 None:intergenic 10.0%
!! AAAAAAATAAAAATAGTAAG+TGG - chr4_4:81913497-81913516 Msa0708360:intron 10.0%
!! TGTTACCTAAAATTAAATTA+AGG - chr4_4:81910816-81910835 Msa0708360:intron 15.0%
!! GTTACCTAAAATTAAATTAA+GGG - chr4_4:81910817-81910836 Msa0708360:intron 15.0%
!!! CAATCTTTTTATTGTAATTT+TGG + chr4_4:81911012-81911031 None:intergenic 15.0%
!! AAAATGAATATGATTATAGA+TGG + chr4_4:81911220-81911239 None:intergenic 15.0%
!!! TAAATAAAAATTTAGAATGG+AGG - chr4_4:81911272-81911291 Msa0708360:intron 15.0%
!!! TATACATGATTCAATTTTTA+TGG + chr4_4:81911496-81911515 None:intergenic 15.0%
!! AAATTGAATCATGTATATTA+TGG - chr4_4:81911499-81911518 Msa0708360:intron 15.0%
!!! GTTATTTTTGTTTGAATTTT+AGG - chr4_4:81912419-81912438 Msa0708360:CDS 15.0%
!!! CTTTTCATTATTCTTAATTA+TGG - chr4_4:81912588-81912607 Msa0708360:CDS 15.0%
!! TTATTATAATAATAACACAG+TGG + chr4_4:81913061-81913080 None:intergenic 15.0%
!! AAAAAATAGAAATATTGTCT+TGG - chr4_4:81913994-81914013 Msa0708360:intron 15.0%
!!! TTATCAAGTTGAAATTTAAT+TGG - chr4_4:81914906-81914925 Msa0708360:intron 15.0%
!! ATTATTTATATATCAAATGC+AGG - chr4_4:81915018-81915037 Msa0708360:intron 15.0%
!!! GCTTACAATTAAGAATTTTT+AGG - chr4_4:81909496-81909515 Msa0708360:three_prime_UTR 20.0%
!! ACACAACAGATATATATAAA+AGG + chr4_4:81910177-81910196 None:intergenic 20.0%
!! ATAAATATTATCAAGTAGCA+AGG - chr4_4:81910491-81910510 Msa0708360:intron 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG + chr4_4:81910557-81910576 None:intergenic 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG + chr4_4:81910558-81910577 None:intergenic 20.0%
!!! TGTTGTCATTTTATAACATA+AGG + chr4_4:81910618-81910637 None:intergenic 20.0%
!!! TCAAAGAAATTTGATTTTCT+AGG - chr4_4:81910664-81910683 Msa0708360:intron 20.0%
!!! TGAGTTTGATGAATTTTTTT+TGG - chr4_4:81910716-81910735 Msa0708360:intron 20.0%
!!! TAGTCCCTTAATTTAATTTT+AGG + chr4_4:81910824-81910843 None:intergenic 20.0%
!! ATTTAATCCAGAAAGAAAAA+TGG + chr4_4:81911047-81911066 None:intergenic 20.0%
!! AGAAAAGATATATGTTGAAA+TGG - chr4_4:81911401-81911420 Msa0708360:intron 20.0%
!! GAAAAGATATATGTTGAAAT+GGG - chr4_4:81911402-81911421 Msa0708360:intron 20.0%
!!! TTTTAATTCTAGATCAAATC+TGG + chr4_4:81911650-81911669 None:intergenic 20.0%
!!! CATAAAATTGAGTTTTGATA+GGG + chr4_4:81912078-81912097 None:intergenic 20.0%
!!! TCATAAAATTGAGTTTTGAT+AGG + chr4_4:81912079-81912098 None:intergenic 20.0%
!! CAATGCATTTCTTAATAAAT+AGG - chr4_4:81912540-81912559 Msa0708360:intron 20.0%
!! TTCTTAATAAATAGGATATC+TGG - chr4_4:81912548-81912567 Msa0708360:CDS 20.0%
!! TATATTATACTTTGTCAGAT+TGG - chr4_4:81912800-81912819 Msa0708360:intron 20.0%
!! TGAAAAACATAAATAAGACT+AGG + chr4_4:81912923-81912942 None:intergenic 20.0%
!! TGTTACGATTATACAATTTA+CGG + chr4_4:81913631-81913650 None:intergenic 20.0%
!! TTATATTTATAATGCCTTCA+AGG - chr4_4:81914215-81914234 Msa0708360:intron 20.0%
!!! TGCATTATAATTTCTTTTTC+AGG - chr4_4:81914266-81914285 Msa0708360:intron 20.0%
!! CTTCAATAAATAAAGAAAAC+TGG + chr4_4:81914461-81914480 None:intergenic 20.0%
!!! CTTTAAAAGAGTACAAAAAT+GGG + chr4_4:81915246-81915265 None:intergenic 20.0%
!!! TCTTTAAAAGAGTACAAAAA+TGG + chr4_4:81915247-81915266 None:intergenic 20.0%
!!! CTCTTTTAAAGAATGATTTA+TGG - chr4_4:81915255-81915274 Msa0708360:intron 20.0%
!! GAAAAAAATGTGATACAATA+TGG + chr4_4:81915337-81915356 None:intergenic 20.0%
!!! AAAATCAACATGATTTTCTT+AGG + chr4_4:81915363-81915382 None:intergenic 20.0%
! TCTCGTCAATAAATTACAAT+TGG + chr4_4:81909458-81909477 None:intergenic 25.0%
!!! CTTTACCTTTTTTGTTCATA+AGG - chr4_4:81909716-81909735 Msa0708360:CDS 25.0%
! ATCTACCTTATGAACAAAAA+AGG + chr4_4:81909724-81909743 None:intergenic 25.0%
!! TCGACAGACTTTAAAAATAT+TGG - chr4_4:81909933-81909952 Msa0708360:intron 25.0%
! AAAAGATAAATCTAATTGCC+TGG + chr4_4:81909976-81909995 None:intergenic 25.0%
!!! AGTAAATATCTTTTGAAGCT+GGG + chr4_4:81910083-81910102 None:intergenic 25.0%
!!! TAGTAAATATCTTTTGAAGC+TGG + chr4_4:81910084-81910103 None:intergenic 25.0%
! GATACAAACAACTTACTTAT+GGG + chr4_4:81910240-81910259 None:intergenic 25.0%
! TGATACAAACAACTTACTTA+TGG + chr4_4:81910241-81910260 None:intergenic 25.0%
! TAAGTAAGTTGTTTGTATCA+TGG - chr4_4:81910241-81910260 Msa0708360:intron 25.0%
!!! TAGTCCCTTAACTTTATTTT+AGG - chr4_4:81910550-81910569 Msa0708360:CDS 25.0%
! TCGTGACAAAAAAAAGATAA+AGG + chr4_4:81910588-81910607 None:intergenic 25.0%
!!! TGCTTTTTTTATGGGAAAAA+GGG + chr4_4:81910931-81910950 None:intergenic 25.0%
!!! ATGCTTTTTTTATGGGAAAA+AGG + chr4_4:81910932-81910951 None:intergenic 25.0%
!!! TTTCCCATAAAAAAAGCATT+TGG - chr4_4:81910933-81910952 Msa0708360:intron 25.0%
!!! CAACCAAATGCTTTTTTTAT+GGG + chr4_4:81910939-81910958 None:intergenic 25.0%
!!! ACAACCAAATGCTTTTTTTA+TGG + chr4_4:81910940-81910959 None:intergenic 25.0%
!!! TATCCACAATTTTGAAGTAA+TGG - chr4_4:81911239-81911258 Msa0708360:intron 25.0%
! TTTCCATTACTTCAAAATTG+TGG + chr4_4:81911245-81911264 None:intergenic 25.0%
! ACTATTAAAGATTTAGAAGC+AGG - chr4_4:81911349-81911368 Msa0708360:intron 25.0%
!! TGTTTGATATAGATCTTTTG+TGG - chr4_4:81911448-81911467 Msa0708360:intron 25.0%
!!! ATTATGGCTAATTTTGAAGT+TGG - chr4_4:81911515-81911534 Msa0708360:intron 25.0%
!! CAGGTTTTTCTTGAAATTAA+GGG - chr4_4:81911547-81911566 Msa0708360:intron 25.0%
!!! TACAAACCACAAAAGTATTA+TGG + chr4_4:81911700-81911719 None:intergenic 25.0%
!! GCTAAGATATAACTTTTCAT+TGG - chr4_4:81911823-81911842 Msa0708360:intron 25.0%
!!! TTGTGTAATCCTTTGATTTT+AGG - chr4_4:81912134-81912153 Msa0708360:intron 25.0%
!!! TGTGTAATCCTTTGATTTTA+GGG - chr4_4:81912135-81912154 Msa0708360:intron 25.0%
! AACATAAGTGAAATGATTGA+TGG + chr4_4:81912394-81912413 None:intergenic 25.0%
! TTTATTAAGAAATGCATTGC+TGG + chr4_4:81912539-81912558 None:intergenic 25.0%
! AACATAAATAAGACTAGGAA+TGG + chr4_4:81912918-81912937 None:intergenic 25.0%
!!! TTTATTAAGTGAGTTGATGT+TGG - chr4_4:81912964-81912983 Msa0708360:CDS 25.0%
! AGACTAGAATTATGTAACAT+TGG - chr4_4:81912999-81913018 Msa0708360:CDS 25.0%
!! ATTGCAATTCAACCAAATTT+TGG - chr4_4:81913128-81913147 Msa0708360:intron 25.0%
!! TTGCAATTCAACCAAATTTT+GGG - chr4_4:81913129-81913148 Msa0708360:intron 25.0%
! ACTCTTTCAAGAAAACTATT+TGG + chr4_4:81913197-81913216 None:intergenic 25.0%
!! AACTTAGATTTGGTTACTTT+GGG - chr4_4:81913369-81913388 Msa0708360:intron 25.0%
!! CTTGTATTTTTCATACCATT+GGG + chr4_4:81913424-81913443 None:intergenic 25.0%
! TCTCAAACGTTAATATCTAT+GGG - chr4_4:81913932-81913951 Msa0708360:intron 25.0%
!!! CAAATATAGAAGTATTGTCT+AGG + chr4_4:81914063-81914082 None:intergenic 25.0%
! CTAGACAATACTTCTATATT+TGG - chr4_4:81914061-81914080 Msa0708360:intron 25.0%
! ACATGTCAGAAAATTGAAAA+GGG + chr4_4:81914101-81914120 None:intergenic 25.0%
! AACATGTCAGAAAATTGAAA+AGG + chr4_4:81914102-81914121 None:intergenic 25.0%
! TATTTCCAAAATATAAGGAC+CGG + chr4_4:81914184-81914203 None:intergenic 25.0%
!!! GTCCTTATATTTTGGAAATA+GGG - chr4_4:81914184-81914203 Msa0708360:intron 25.0%
! TACCCTATTTCCAAAATATA+AGG + chr4_4:81914189-81914208 None:intergenic 25.0%
!!! ATTTGCTATTATCACTAATG+CGG - chr4_4:81914592-81914611 Msa0708360:intron 25.0%
!! AGTTCAAGCAATTTTATTGA+AGG - chr4_4:81914738-81914757 Msa0708360:intron 25.0%
!! TGAAATGTTTTCAGTTTAGT+GGG + chr4_4:81914869-81914888 None:intergenic 25.0%
!! TTGAAATGTTTTCAGTTTAG+TGG + chr4_4:81914870-81914889 None:intergenic 25.0%
! ATTTATATATCAAATGCAGG+AGG - chr4_4:81915021-81915040 Msa0708360:intron 25.0%
!!! TCAACATGTATTTTTAAGAG+CGG - chr4_4:81915291-81915310 Msa0708360:CDS 25.0%
! TATGGAAATGTAGGTTTATA+TGG + chr4_4:81915319-81915338 None:intergenic 25.0%
! TTTATCTAGATAACTTCTCA+TGG + chr4_4:81915477-81915496 None:intergenic 25.0%
! TGAGAAGTTATCTAGATAAA+AGG - chr4_4:81915477-81915496 Msa0708360:five_prime_UTR 25.0%
! GAGAAGTTATCTAGATAAAA+GGG - chr4_4:81915478-81915497 Msa0708360:five_prime_UTR 25.0%
CGTCAATAAATTACAATTGG+AGG + chr4_4:81909455-81909474 None:intergenic 30.0%
AGATATCTAGAAGACATACA+TGG - chr4_4:81909597-81909616 Msa0708360:three_prime_UTR 30.0%
AATTCAAATGATGAACCTAC+TGG + chr4_4:81909640-81909659 None:intergenic 30.0%
AAAAAGGTAAAGATCAACAC+AGG + chr4_4:81909708-81909727 None:intergenic 30.0%
TTGATGGAACTAAATAATCC+CGG + chr4_4:81909786-81909805 None:intergenic 30.0%
GGTGAAAAAATCTAAATACC+TGG + chr4_4:81909813-81909832 None:intergenic 30.0%
!!! AGATTTTTTCACCTATTGCA+TGG - chr4_4:81909820-81909839 Msa0708360:CDS 30.0%
!!! GATTTTTTCACCTATTGCAT+GGG - chr4_4:81909821-81909840 Msa0708360:CDS 30.0%
AAATAACAATCCCATGCAAT+AGG + chr4_4:81909834-81909853 None:intergenic 30.0%
AGTCTTTCTTTCTCTTTGTT+TGG - chr4_4:81909879-81909898 Msa0708360:intron 30.0%
! TTCTTTCTCTTTGTTTGGTA+TGG - chr4_4:81909884-81909903 Msa0708360:intron 30.0%
!!! TGTTTTTTCAAACGCTCAAT+TGG - chr4_4:81910016-81910035 Msa0708360:intron 30.0%
TGTTGAATTTAGTAGTTGAC+AGG - chr4_4:81910048-81910067 Msa0708360:intron 30.0%
ATTTACTACCTATACCTCAA+TGG - chr4_4:81910096-81910115 Msa0708360:intron 30.0%
GCTATTTAAGCAAATGCTAA+TGG - chr4_4:81910456-81910475 Msa0708360:intron 30.0%
!!! TTTTGAGGTTATTTGTATCC+TGG - chr4_4:81910875-81910894 Msa0708360:intron 30.0%
!! TAAGTGACCATTTTTCTTTC+TGG - chr4_4:81911037-81911056 Msa0708360:intron 30.0%
! TAATGAAGAGTTGATCAGAA+AGG - chr4_4:81911184-81911203 Msa0708360:intron 30.0%
! AAATTTAGAATGGAGGAACA+AGG - chr4_4:81911279-81911298 Msa0708360:intron 30.0%
! CAACAGATGATAACTTCTTT+TGG - chr4_4:81911305-81911324 Msa0708360:intron 30.0%
AGATATATGTTGAAATGGGA+AGG - chr4_4:81911406-81911425 Msa0708360:intron 30.0%
!!! TTGAAGTTGGTTTTTATTGC+AGG - chr4_4:81911528-81911547 Msa0708360:intron 30.0%
! GCAGGTTTTTCTTGAAATTA+AGG - chr4_4:81911546-81911565 Msa0708360:intron 30.0%
AGCAATGAATAGATATGGTT+CGG - chr4_4:81911612-81911631 Msa0708360:intron 30.0%
!! AAACCACAAAAGTATTATGG+AGG + chr4_4:81911697-81911716 None:intergenic 30.0%
AAGCAAATCTAGGTAAGTTA+TGG + chr4_4:81911797-81911816 None:intergenic 30.0%
! AGATATAACTTTTCATTGGC+TGG - chr4_4:81911827-81911846 Msa0708360:intron 30.0%
! AAAGTAATTTGTGTACCTTC+TGG - chr4_4:81911922-81911941 Msa0708360:intron 30.0%
AATTCAGTTCTTAAGAAACC+TGG - chr4_4:81911961-81911980 Msa0708360:intron 30.0%
! TTTACCTTTTCTCAAGATCA+CGG - chr4_4:81912032-81912051 Msa0708360:CDS 30.0%
AAGGATTACACAATAAACAC+AGG + chr4_4:81912127-81912146 None:intergenic 30.0%
!! GTGTAATCCTTTGATTTTAG+GGG - chr4_4:81912136-81912155 Msa0708360:intron 30.0%
TCAATATCCCCTAAAATCAA+AGG + chr4_4:81912146-81912165 None:intergenic 30.0%
!! TTTGATTTTAGGGGATATTG+AGG - chr4_4:81912145-81912164 Msa0708360:intron 30.0%
!! TTGATTTTAGGGGATATTGA+GGG - chr4_4:81912146-81912165 Msa0708360:intron 30.0%
TTCTGCTTTAGTATCAAGTA+TGG - chr4_4:81912172-81912191 Msa0708360:CDS 30.0%
CAACTAGAGAGGATTTATTA+AGG - chr4_4:81912201-81912220 Msa0708360:CDS 30.0%
GCAAATAAAATCAGATCACT+TGG + chr4_4:81912242-81912261 None:intergenic 30.0%
!! GATCTGATTTTATTTGCAGT+TGG - chr4_4:81912245-81912264 Msa0708360:CDS 30.0%
AATCCACAAAATTGAATGTC+TGG + chr4_4:81912445-81912464 None:intergenic 30.0%
AATGTTTGAGTGGAATGATT+CGG - chr4_4:81912476-81912495 Msa0708360:intron 30.0%
CTTATGACATGGTTTACAAT+GGG - chr4_4:81912691-81912710 Msa0708360:CDS 30.0%
TTATGACATGGTTTACAATG+GGG - chr4_4:81912692-81912711 Msa0708360:CDS 30.0%
ATTATACTTTGTCAGATTGG+CGG - chr4_4:81912803-81912822 Msa0708360:intron 30.0%
!! TTGTGCTCTATTTGTTTTTC+TGG - chr4_4:81913026-81913045 Msa0708360:intron 30.0%
! CAACTTAGATTTGGTTACTT+TGG - chr4_4:81913368-81913387 Msa0708360:intron 30.0%
! GCTTGTATTTTTCATACCAT+TGG + chr4_4:81913425-81913444 None:intergenic 30.0%
! GCCTATGACAATTTTACTTT+AGG - chr4_4:81913443-81913462 Msa0708360:intron 30.0%
GCCTAAAGTAAAATTGTCAT+AGG + chr4_4:81913447-81913466 None:intergenic 30.0%
AGTTACTATACGAATGTGTT+TGG - chr4_4:81913520-81913539 Msa0708360:intron 30.0%
! ATCTTGATTTTACGCATGAT+CGG - chr4_4:81913590-81913609 Msa0708360:intron 30.0%
!!! ACTTTTCAAGTGTGATGTAA+AGG + chr4_4:81913745-81913764 None:intergenic 30.0%
GTCTCAAACGTTAATATCTA+TGG - chr4_4:81913931-81913950 Msa0708360:intron 30.0%
TTCTTTAATATGTGCCCTTA+GGG + chr4_4:81913973-81913992 None:intergenic 30.0%
ATTCTTTAATATGTGCCCTT+AGG + chr4_4:81913974-81913993 None:intergenic 30.0%
TAGAAATATTGTCTTGGAAG+TGG - chr4_4:81914000-81914019 Msa0708360:intron 30.0%
!! GGTCCTTATATTTTGGAAAT+AGG - chr4_4:81914183-81914202 Msa0708360:intron 30.0%
!! ATTTTAGAAGACTTACCATG+TGG + chr4_4:81914342-81914361 None:intergenic 30.0%
ATAATCCAGTTTATCGACAA+GGG + chr4_4:81914384-81914403 None:intergenic 30.0%
AATGATCACAACACAATCAA+TGG - chr4_4:81914568-81914587 Msa0708360:intron 30.0%
!! TTTGCTATTATCACTAATGC+GGG - chr4_4:81914593-81914612 Msa0708360:intron 30.0%
TGATCCTGAAAACATGTATA+TGG - chr4_4:81914632-81914651 Msa0708360:intron 30.0%
! ATTGCCATATACATGTTTTC+AGG + chr4_4:81914639-81914658 None:intergenic 30.0%
!! CTGTAGCTTTAACATAAGTT+TGG + chr4_4:81914701-81914720 None:intergenic 30.0%
ACTTAGTGAATAGAATGATG+TGG - chr4_4:81914768-81914787 Msa0708360:intron 30.0%
CTTTCAATCACTACATAGAT+AGG - chr4_4:81915189-81915208 Msa0708360:intron 30.0%
GTGATACAATATGGAAATGT+AGG + chr4_4:81915328-81915347 None:intergenic 30.0%
!!! TGATTTTAGTTAAGTCCAGT+TGG - chr4_4:81915376-81915395 Msa0708360:five_prime_UTR 30.0%
AAATTGTAATCAAGTCCAAC+TGG + chr4_4:81915394-81915413 None:intergenic 30.0%
TTCTGACACATGTTTGATTG+TGG - chr4_4:81909408-81909427 Msa0708360:three_prime_UTR 35.0%
!! GGTATCGATATCTTGATCTA+AGG - chr4_4:81909517-81909536 Msa0708360:three_prime_UTR 35.0%
ATCGATATCTTGATCTAAGG+AGG - chr4_4:81909520-81909539 Msa0708360:three_prime_UTR 35.0%
TGAATTCTAACATGTTGCTG+CGG - chr4_4:81909550-81909569 Msa0708360:three_prime_UTR 35.0%
!! AGAAGACATACATGGTTTTG+TGG - chr4_4:81909605-81909624 Msa0708360:three_prime_UTR 35.0%
TGATGGAACTAAATAATCCC+GGG + chr4_4:81909785-81909804 None:intergenic 35.0%
! TTTAGTTCCATCAAGAATCC+AGG - chr4_4:81909792-81909811 Msa0708360:CDS 35.0%
CTAAATACCTGGATTCTTGA+TGG + chr4_4:81909802-81909821 None:intergenic 35.0%
CATTAATGCCATTGAGGTAT+AGG + chr4_4:81910107-81910126 None:intergenic 35.0%
GTTCTACATTAATGCCATTG+AGG + chr4_4:81910113-81910132 None:intergenic 35.0%
GCATTTGCTTAAATAGCTGA+GGG + chr4_4:81910453-81910472 None:intergenic 35.0%
AGCATTTGCTTAAATAGCTG+AGG + chr4_4:81910454-81910473 None:intergenic 35.0%
TTGTATCCTGGCTTATGTTA+TGG - chr4_4:81910887-81910906 Msa0708360:intron 35.0%
AAGCAAGCATTCTGTATTCT+TGG + chr4_4:81910977-81910996 None:intergenic 35.0%
! TCACCTTTTGCAGATGTTTT+CGG - chr4_4:81911072-81911091 Msa0708360:intron 35.0%
ATATCTAGTTGTGTGAACTC+AGG + chr4_4:81911125-81911144 None:intergenic 35.0%
TGAGTTCACACAACTAGATA+TGG - chr4_4:81911124-81911143 Msa0708360:intron 35.0%
AGAGACAACATATCCTCTAA+AGG + chr4_4:81911164-81911183 None:intergenic 35.0%
! ATATAGATCTTTTGTGGACG+TGG - chr4_4:81911454-81911473 Msa0708360:intron 35.0%
! TTTTCTTGAAATTAAGGGCG+TGG - chr4_4:81911552-81911571 Msa0708360:intron 35.0%
GCTGAAGCAATGAATAGATA+TGG - chr4_4:81911607-81911626 Msa0708360:intron 35.0%
TCTAGATCAAATCTGGTATC+TGG + chr4_4:81911643-81911662 None:intergenic 35.0%
!! CTTTTGTGGTTTGTAGCATA+TGG - chr4_4:81911705-81911724 Msa0708360:intron 35.0%
TAGCAAGATGAAGCAAATCT+AGG + chr4_4:81911807-81911826 None:intergenic 35.0%
! AGGTATCTGACATTTTCTCA+GGG - chr4_4:81911851-81911870 Msa0708360:intron 35.0%
AGATCGTCTTAGAGTTTATG+TGG - chr4_4:81912295-81912314 Msa0708360:intron 35.0%
GTTTATGTGGCTCATGAATT+AGG - chr4_4:81912308-81912327 Msa0708360:intron 35.0%
AAAGCAGATACCAACTTACA+TGG + chr4_4:81912343-81912362 None:intergenic 35.0%
GAATCATTCCACTCAAACAT+TGG + chr4_4:81912477-81912496 None:intergenic 35.0%
TCTTAATTATGGGTTTGTGC+AGG - chr4_4:81912599-81912618 Msa0708360:CDS 35.0%
TTGTTCATGTCTTCAGGATT+TGG + chr4_4:81912648-81912667 None:intergenic 35.0%
GCTTATGACATGGTTTACAA+TGG - chr4_4:81912690-81912709 Msa0708360:CDS 35.0%
TGTAAGGCTCACAAGTTAAA+GGG + chr4_4:81912756-81912775 None:intergenic 35.0%
TTGTAAGGCTCACAAGTTAA+AGG + chr4_4:81912757-81912776 None:intergenic 35.0%
GTATCAGTCGCAAAATTGTA+AGG + chr4_4:81912772-81912791 None:intergenic 35.0%
TTATACTTTGTCAGATTGGC+GGG - chr4_4:81912804-81912823 Msa0708360:intron 35.0%
TAAACGCGACATACAACAAA+AGG - chr4_4:81912844-81912863 Msa0708360:CDS 35.0%
! CGACATACAACAAAAGGTTT+TGG - chr4_4:81912850-81912869 Msa0708360:CDS 35.0%
AAGATAGCAAGATACTTCAG+TGG + chr4_4:81913100-81913119 None:intergenic 35.0%
! ACTGAAGTATCTTGCTATCT+TGG - chr4_4:81913099-81913118 Msa0708360:intron 35.0%
AAGCAGAAAAATGTTAGAGC+AGG - chr4_4:81913233-81913252 Msa0708360:CDS 35.0%
AGAAAAATGTTAGAGCAGGA+AGG - chr4_4:81913237-81913256 Msa0708360:CDS 35.0%
! GAGGGTATACAACTTAGATT+TGG - chr4_4:81913359-81913378 Msa0708360:intron 35.0%
! ATTTGGTTACTTTGGGTGAT+TGG - chr4_4:81913376-81913395 Msa0708360:intron 35.0%
! TTTGGTTACTTTGGGTGATT+GGG - chr4_4:81913377-81913396 Msa0708360:intron 35.0%
!! ACAATCTCCTCTCTACTTTT+CGG + chr4_4:81913474-81913493 None:intergenic 35.0%
TGTGTTTGGATTACATCACA+CGG - chr4_4:81913534-81913553 Msa0708360:intron 35.0%
! TCTTACCGGTCCTTATATTT+TGG - chr4_4:81914176-81914195 Msa0708360:intron 35.0%
GATAATCCAGTTTATCGACA+AGG + chr4_4:81914385-81914404 None:intergenic 35.0%
AGCATTTATCACTAACTGCA+AGG - chr4_4:81914482-81914501 Msa0708360:intron 35.0%
! TGTTTTCAGTTTAGTGGGAA+TGG + chr4_4:81914864-81914883 None:intergenic 35.0%
! AGCACTACTCTAAAAACATG+AGG - chr4_4:81914943-81914962 Msa0708360:intron 35.0%
!!! ACTGTGCAGTTGTTGTTTTT+GGG + chr4_4:81915119-81915138 None:intergenic 35.0%
TGAAAGATCTTTCAGCTGTT+GGG + chr4_4:81915175-81915194 None:intergenic 35.0%
TTGAAAGATCTTTCAGCTGT+TGG + chr4_4:81915176-81915195 None:intergenic 35.0%
!!! AGACATACATGGTTTTGTGG+AGG - chr4_4:81909608-81909627 Msa0708360:three_prime_UTR 40.0%
GTCTATTGCACATCGTACTT+CGG - chr4_4:81909665-81909684 Msa0708360:exon 40.0%
GTACTTCGGTTGTTGGTATT+TGG - chr4_4:81909679-81909698 Msa0708360:exon 40.0%
TTAAATAGCTGAGGGCTTTG+TGG + chr4_4:81910445-81910464 None:intergenic 40.0%
AAGCAAATGCTAATGGTAGC+TGG - chr4_4:81910463-81910482 Msa0708360:intron 40.0%
TATCCTGGCTTATGTTATGG+AGG - chr4_4:81910890-81910909 Msa0708360:intron 40.0%
AAACCTCCATAACATAAGCC+AGG + chr4_4:81910896-81910915 None:intergenic 40.0%
! CACCTTTTGCAGATGTTTTC+GGG - chr4_4:81911073-81911092 Msa0708360:intron 40.0%
ATCCCGAAAACATCTGCAAA+AGG + chr4_4:81911078-81911097 None:intergenic 40.0%
CACACAACTAGATATGGAGA+TGG - chr4_4:81911130-81911149 Msa0708360:intron 40.0%
! GATGGCTTTTACTCCTTTAG+AGG - chr4_4:81911148-81911167 Msa0708360:intron 40.0%
GATCAAATCTGGTATCTGGA+CGG + chr4_4:81911639-81911658 None:intergenic 40.0%
!! CCACAAAAGTATTATGGAGG+AGG + chr4_4:81911694-81911713 None:intergenic 40.0%
! CCTCCTCCATAATACTTTTG+TGG - chr4_4:81911691-81911710 Msa0708360:intron 40.0%
!! ATAACTTTTCATTGGCTGGC+AGG - chr4_4:81911831-81911850 Msa0708360:intron 40.0%
! CAGGTATCTGACATTTTCTC+AGG - chr4_4:81911850-81911869 Msa0708360:intron 40.0%
GGAATCAGAGAAAACCTTGA+AGG + chr4_4:81911881-81911900 None:intergenic 40.0%
! CAAGGTTTTCTCTGATTCCT+TGG - chr4_4:81911882-81911901 Msa0708360:intron 40.0%
!!! GAGTACTTTTTTGCACCAGA+AGG + chr4_4:81911940-81911959 None:intergenic 40.0%
TACAACGAAGCACACAAATC+TGG - chr4_4:81912000-81912019 Msa0708360:CDS 40.0%
TTCTCCGTGATCTTGAGAAA+AGG + chr4_4:81912039-81912058 None:intergenic 40.0%
TTTCTCAAGATCACGGAGAA+TGG - chr4_4:81912039-81912058 Msa0708360:CDS 40.0%
TATGGATTCTGCAACTAGAG+AGG - chr4_4:81912190-81912209 Msa0708360:CDS 40.0%
GTTTGATCGACCATGTAAGT+TGG - chr4_4:81912330-81912349 Msa0708360:intron 40.0%
! AGGCCAGACATTCAATTTTG+TGG - chr4_4:81912439-81912458 Msa0708360:intron 40.0%
CCACTCAAACATTGGAAAGT+CGG + chr4_4:81912469-81912488 None:intergenic 40.0%
AGACATGAACAACCTTGCAT+CGG - chr4_4:81912656-81912675 Msa0708360:CDS 40.0%
TATACTTTGTCAGATTGGCG+GGG - chr4_4:81912805-81912824 Msa0708360:intron 40.0%
!!! CAAAAGGTTTTGGAGACTGT+AGG - chr4_4:81912860-81912879 Msa0708360:CDS 40.0%
!! TTAAGTGAGTTGATGTTGGC+TGG - chr4_4:81912968-81912987 Msa0708360:CDS 40.0%
TAGCAAGATACTTCAGTGGA+AGG + chr4_4:81913096-81913115 None:intergenic 40.0%
!! CAACCAAATTTTGGGAGAAC+AGG - chr4_4:81913137-81913156 Msa0708360:intron 40.0%
CTTCCTGTTCTCCCAAAATT+TGG + chr4_4:81913143-81913162 None:intergenic 40.0%
ATCTAAGTTGTATACCCTCC+CGG + chr4_4:81913358-81913377 None:intergenic 40.0%
! TTGGGTCTACAACTTTTCCT+TGG - chr4_4:81913395-81913414 Msa0708360:intron 40.0%
! TGGGTCTACAACTTTTCCTT+GGG - chr4_4:81913396-81913415 Msa0708360:intron 40.0%
!! CAATCTCCTCTCTACTTTTC+GGG + chr4_4:81913473-81913492 None:intergenic 40.0%
GTGTTTGGATTACATCACAC+GGG - chr4_4:81913535-81913554 Msa0708360:intron 40.0%
! CGGGACAATTGATTCATTCA+AGG - chr4_4:81913559-81913578 Msa0708360:intron 40.0%
! GATTTTACGCATGATCGGTA+AGG - chr4_4:81913595-81913614 Msa0708360:intron 40.0%
AAATGCTAACAAGTGCCCTA+AGG - chr4_4:81913955-81913974 Msa0708360:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG - chr4_4:81913956-81913975 Msa0708360:intron 40.0%
! ATTGAAAAGGGCACACGTTA+AGG + chr4_4:81914089-81914108 None:intergenic 40.0%
TTTCAGGCTGAAGCTAAGTT+TGG - chr4_4:81914282-81914301 Msa0708360:intron 40.0%
TCTTCTTGAAGCTCTTGACA+TGG - chr4_4:81914308-81914327 Msa0708360:intron 40.0%
CTTCTTGAAGCTCTTGACAT+GGG - chr4_4:81914309-81914328 Msa0708360:intron 40.0%
TTCTTGAAGCTCTTGACATG+GGG - chr4_4:81914310-81914329 Msa0708360:intron 40.0%
TTAGAAGACTTACCATGTGG+CGG + chr4_4:81914339-81914358 None:intergenic 40.0%
! CTTTTTCCCTTTCCTCGATA+TGG + chr4_4:81914437-81914456 None:intergenic 40.0%
CATATCGAGGAAAGGGAAAA+AGG - chr4_4:81914435-81914454 Msa0708360:CDS 40.0%
TATCACTAACTGCAAGGTAG+TGG - chr4_4:81914488-81914507 Msa0708360:intron 40.0%
! AGATTGGTTATGTTGCTAGC+TGG - chr4_4:81915063-81915082 Msa0708360:intron 40.0%
! GATTGGTTATGTTGCTAGCT+GGG - chr4_4:81915064-81915083 Msa0708360:intron 40.0%
ATTGGTTATGTTGCTAGCTG+GGG - chr4_4:81915065-81915084 Msa0708360:intron 40.0%
!!! CACTGTGCAGTTGTTGTTTT+TGG + chr4_4:81915120-81915139 None:intergenic 40.0%
GAAAGATCTTTCAGCTGTTG+GGG + chr4_4:81915174-81915193 None:intergenic 40.0%
! AGCGAGTGGTGGAAAAAAAA+AGG - chr4_4:81915438-81915457 Msa0708360:intron 40.0%
!! TTGTGGAGGTACTATCCAGT+AGG - chr4_4:81909622-81909641 Msa0708360:three_prime_UTR 45.0%
GGTGTGGATCTTGACAGTAT+TGG + chr4_4:81909754-81909773 None:intergenic 45.0%
GTCACATGAATTACGAAGCG+AGG - chr4_4:81910403-81910422 Msa0708360:intron 45.0%
AATTACCAAACCCTTTCCCC+AGG - chr4_4:81911575-81911594 Msa0708360:intron 45.0%
CATATGTAAGCCTGGGGAAA+GGG + chr4_4:81911588-81911607 None:intergenic 45.0%
CTTCAGCATATGTAAGCCTG+GGG + chr4_4:81911594-81911613 None:intergenic 45.0%
GCTTCAGCATATGTAAGCCT+GGG + chr4_4:81911595-81911614 None:intergenic 45.0%
TGCTTCAGCATATGTAAGCC+TGG + chr4_4:81911596-81911615 None:intergenic 45.0%
CACAAGCAGTGATTCAACAC+AGG + chr4_4:81911759-81911778 None:intergenic 45.0%
TTTCTCAGGGTCTTCCTTCA+AGG - chr4_4:81911864-81911883 Msa0708360:intron 45.0%
TTCTCTGATTCCTTGGAGTG+TGG - chr4_4:81911889-81911908 Msa0708360:intron 45.0%
AATAACACCACCACACTCCA+AGG + chr4_4:81911902-81911921 None:intergenic 45.0%
TCTTAAGAAACCTGGTGCAC+AGG - chr4_4:81911969-81911988 Msa0708360:intron 45.0%
CTTAAGAAACCTGGTGCACA+GGG - chr4_4:81911970-81911989 Msa0708360:intron 45.0%
AGCACACAAATCTGGTGCAA+AGG - chr4_4:81912008-81912027 Msa0708360:CDS 45.0%
GCACACAAATCTGGTGCAAA+GGG - chr4_4:81912009-81912028 Msa0708360:CDS 45.0%
TTATTAAGGCGATGCTCTGC+AGG - chr4_4:81912215-81912234 Msa0708360:CDS 45.0%
CCGACTTTCCAATGTTTGAG+TGG - chr4_4:81912466-81912485 Msa0708360:intron 45.0%
!! TCAGGATTTGGTGCAGTGAA+AGG + chr4_4:81912636-81912655 None:intergenic 45.0%
GCAAGGTTGTTCATGTCTTC+AGG + chr4_4:81912654-81912673 None:intergenic 45.0%
!! TCGTGCATTGGCTTATGACA+TGG - chr4_4:81912680-81912699 Msa0708360:CDS 45.0%
TGACATGGTTTACAATGGGG+TGG - chr4_4:81912695-81912714 Msa0708360:CDS 45.0%
ATACTTTGTCAGATTGGCGG+GGG - chr4_4:81912806-81912825 Msa0708360:intron 45.0%
AGGGCATATGTGTTAGAGTG+GGG + chr4_4:81913326-81913345 None:intergenic 45.0%
! GAGGGCATATGTGTTAGAGT+GGG + chr4_4:81913327-81913346 None:intergenic 45.0%
! TGAGGGCATATGTGTTAGAG+TGG + chr4_4:81913328-81913347 None:intergenic 45.0%
CATATGCCCTCACATGTATC+CGG - chr4_4:81913336-81913355 Msa0708360:intron 45.0%
ATATGCCCTCACATGTATCC+GGG - chr4_4:81913337-81913356 Msa0708360:intron 45.0%
TTGGATTACATCACACGGGA+CGG - chr4_4:81913539-81913558 Msa0708360:intron 45.0%
TGTGCCACAGTCAATCTTAC+CGG - chr4_4:81914162-81914181 Msa0708360:intron 45.0%
AATTCAGATCAGTCCAAGCC+AGG + chr4_4:81914245-81914264 None:intergenic 45.0%
TCTTGAAGCTCTTGACATGG+GGG - chr4_4:81914311-81914330 Msa0708360:intron 45.0%
TTCCTCCCTTGTCGATAAAC+TGG - chr4_4:81914376-81914395 Msa0708360:CDS 45.0%
ATCCAGTTTATCGACAAGGG+AGG + chr4_4:81914381-81914400 None:intergenic 45.0%
TGCACAACCATATCGAGGAA+AGG - chr4_4:81914427-81914446 Msa0708360:CDS 45.0%
GCACAACCATATCGAGGAAA+GGG - chr4_4:81914428-81914447 Msa0708360:CDS 45.0%
! AGGTAGTGGCAGTTTAGACA+AGG - chr4_4:81914502-81914521 Msa0708360:intron 45.0%
! GGTAGTGGCAGTTTAGACAA+GGG - chr4_4:81914503-81914522 Msa0708360:intron 45.0%
TCAGGATCAGCGTTAATACG+TGG + chr4_4:81914621-81914640 None:intergenic 45.0%
!! AATGCAGGAGGCATAGCTTT+TGG - chr4_4:81915033-81915052 Msa0708360:intron 45.0%
! AGCTTTTGGTCTGGACAGAT+TGG - chr4_4:81915047-81915066 Msa0708360:intron 45.0%
TAGCTGGGGCTAATTCAATC+AGG - chr4_4:81915079-81915098 Msa0708360:CDS 45.0%
AGCTGGGGCTAATTCAATCA+GGG - chr4_4:81915080-81915099 Msa0708360:CDS 45.0%
TTTCCGCTCCTATTACTCAC+AGG - chr4_4:81915412-81915431 Msa0708360:five_prime_UTR 45.0%
!! TCAAAATAAATAAAAAATAA+AGG + chr4_4:81910861-81910880 None:intergenic 5.0%
!!! TTTATTTTTTATTTATTTTG+AGG - chr4_4:81910860-81910879 Msa0708360:intron 5.0%
!! TATTAAATAAAAATTTAGAA+TGG - chr4_4:81911269-81911288 Msa0708360:intron 5.0%
CATGTTGCTGCGGCATAATG+TGG - chr4_4:81909560-81909579 Msa0708360:three_prime_UTR 50.0%
GCACATCGTACTTCGGTTGT+TGG - chr4_4:81909672-81909691 Msa0708360:exon 50.0%
CTGTCAAGATCCACACCAGA+AGG - chr4_4:81909757-81909776 Msa0708360:CDS 50.0%
AAATAATCCCGGGCACCTTC+TGG + chr4_4:81909775-81909794 None:intergenic 50.0%
GTCTCGTCAGAAGTTCATCC+AGG - chr4_4:81909955-81909974 Msa0708360:intron 50.0%
GCATATGTAAGCCTGGGGAA+AGG + chr4_4:81911589-81911608 None:intergenic 50.0%
TCTGATTCCTTGGAGTGTGG+TGG - chr4_4:81911892-81911911 Msa0708360:intron 50.0%
TAAATACCACCCTGTGCACC+AGG + chr4_4:81911982-81912001 None:intergenic 50.0%
! AGTGGAATGATTCGGAGCAG+AGG - chr4_4:81912484-81912503 Msa0708360:intron 50.0%
CATGGTTTACAATGGGGTGG+AGG - chr4_4:81912698-81912717 Msa0708360:CDS 50.0%
GGCTCACAAGTTAAAGGGAG+AGG + chr4_4:81912751-81912770 None:intergenic 50.0%
TACTTTGTCAGATTGGCGGG+GGG - chr4_4:81912807-81912826 Msa0708360:intron 50.0%
GGAGACTGTAGGCATCTCAA+TGG - chr4_4:81912871-81912890 Msa0708360:CDS 50.0%
TGTAGGCATCTCAATGGAGC+AGG - chr4_4:81912877-81912896 Msa0708360:CDS 50.0%
AGCAGGAAGGTCGATACAAG+AGG - chr4_4:81913250-81913269 Msa0708360:CDS 50.0%
GCAGGAAGGTCGATACAAGA+GGG - chr4_4:81913251-81913270 Msa0708360:CDS 50.0%
TGTGTTAGAGTGGGGTGAGT+GGG + chr4_4:81913318-81913337 None:intergenic 50.0%
ATGTGTTAGAGTGGGGTGAG+TGG + chr4_4:81913319-81913338 None:intergenic 50.0%
! ACTTTTCCTTGGGCTCCCAA+TGG - chr4_4:81913406-81913425 Msa0708360:intron 50.0%
TTCATACCATTGGGAGCCCA+AGG + chr4_4:81913415-81913434 None:intergenic 50.0%
GGCTTTCCCGAAAAGTAGAG+AGG - chr4_4:81913464-81913483 Msa0708360:intron 50.0%
TGGATTACATCACACGGGAC+GGG - chr4_4:81913540-81913559 Msa0708360:intron 50.0%
AGGACCGGTAAGATTGACTG+TGG + chr4_4:81914169-81914188 None:intergenic 50.0%
TAATGCCTTCAAGGCATGCC+TGG - chr4_4:81914224-81914243 Msa0708360:intron 50.0%
GTCTGTGCACAACCATATCG+AGG - chr4_4:81914422-81914441 Msa0708360:CDS 50.0%
AAAGCTACAGCTGCAGAGAC+AGG - chr4_4:81914711-81914730 Msa0708360:intron 50.0%
!! AGGAGGCATAGCTTTTGGTC+TGG - chr4_4:81915038-81915057 Msa0708360:intron 50.0%
CCTCCTGTGAGTAATAGGAG+CGG + chr4_4:81915418-81915437 None:intergenic 50.0%
TCGCTCCTCCTGTGAGTAAT+AGG + chr4_4:81915423-81915442 None:intergenic 50.0%
CCTTTGTGCGCACATGCACA+AGG + chr4_4:81910149-81910168 None:intergenic 55.0%
CCTTGTGCATGTGCGCACAA+AGG - chr4_4:81910146-81910165 Msa0708360:intron 55.0%
! TAGCTGAGGGCTTTGTGGCA+AGG + chr4_4:81910440-81910459 None:intergenic 55.0%
GTAAGCCTGGGGAAAGGGTT+TGG + chr4_4:81911583-81911602 None:intergenic 55.0%
AAGAAACCTGGTGCACAGGG+TGG - chr4_4:81911973-81911992 Msa0708360:intron 55.0%
! TGATTCGGAGCAGAGGCTTG+AGG - chr4_4:81912491-81912510 Msa0708360:intron 55.0%
GTGTTAGAGTGGGGTGAGTG+GGG + chr4_4:81913317-81913336 None:intergenic 55.0%
ACCCTCCCGGATACATGTGA+GGG + chr4_4:81913345-81913364 None:intergenic 55.0%
TACCCTCCCGGATACATGTG+AGG + chr4_4:81913346-81913365 None:intergenic 55.0%
CTCGGAAGGTGATCTCGTGA+GGG + chr4_4:81915145-81915164 None:intergenic 55.0%
CCGCTCCTATTACTCACAGG+AGG - chr4_4:81915415-81915434 Msa0708360:five_prime_UTR 55.0%
TTACTCACAGGAGGAGCGAG+TGG - chr4_4:81915424-81915443 Msa0708360:intron 55.0%
!! GATCCACACCAGAAGGTGCC+CGG - chr4_4:81909764-81909783 Msa0708360:CDS 60.0%
!! ATCCACACCAGAAGGTGCCC+GGG - chr4_4:81909765-81909784 Msa0708360:CDS 60.0%
CCAATGCACGAGCCGATGCA+AGG + chr4_4:81912671-81912690 None:intergenic 60.0%
!! CCTTGCATCGGCTCGTGCAT+TGG - chr4_4:81912668-81912687 Msa0708360:CDS 60.0%
GTGGGGTGAGTGGGGAAGTT+AGG + chr4_4:81913309-81913328 None:intergenic 60.0%
TGCCCTCACATGTATCCGGG+AGG - chr4_4:81913340-81913359 Msa0708360:intron 60.0%
GCCCTCACATGTATCCGGGA+GGG - chr4_4:81913341-81913360 Msa0708360:intron 60.0%
CCAAGCCAGGCATGCCTTGA+AGG + chr4_4:81914232-81914251 None:intergenic 60.0%
CCTTCAAGGCATGCCTGGCT+TGG - chr4_4:81914229-81914248 Msa0708360:intron 60.0%
CCTCGGAAGGTGATCTCGTG+AGG + chr4_4:81915146-81915165 None:intergenic 60.0%
CCTCACGAGATCACCTTCCG+AGG - chr4_4:81915143-81915162 Msa0708360:intron 60.0%
CACGAGATCACCTTCCGAGG+TGG - chr4_4:81915146-81915165 Msa0708360:intron 60.0%
TGTTGGGGATCCACCTCGGA+AGG + chr4_4:81915159-81915178 None:intergenic 60.0%
CAGCTGTTGGGGATCCACCT+CGG + chr4_4:81915163-81915182 None:intergenic 60.0%
ATCCCGGGCACCTTCTGGTG+TGG + chr4_4:81909770-81909789 None:intergenic 65.0%
CTCACAGGAGGAGCGAGTGG+TGG - chr4_4:81915427-81915446 Msa0708360:intron 65.0%
GACATGGGGGCTCCGCCACA+TGG - chr4_4:81914324-81914343 Msa0708360:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81909376 81915512 81909376 ID=Msa0708360;Name=Msa0708360
chr4_4 mRNA 81909376 81915512 81909376 ID=Msa0708360-mRNA-1;Parent=Msa0708360;Name=Msa0708360-mRNA-1;_AED=0.18;_eAED=0.18;_QI=145|1|1|1|0.91|0.84|13|306|453
chr4_4 exon 81909376 81909848 81909376 ID=Msa0708360-mRNA-1:exon:26960;Parent=Msa0708360-mRNA-1
chr4_4 exon 81910543 81910600 81910543 ID=Msa0708360-mRNA-1:exon:26959;Parent=Msa0708360-mRNA-1
chr4_4 exon 81911990 81912070 81911990 ID=Msa0708360-mRNA-1:exon:26958;Parent=Msa0708360-mRNA-1
chr4_4 exon 81912169 81912267 81912169 ID=Msa0708360-mRNA-1:exon:26957;Parent=Msa0708360-mRNA-1
chr4_4 exon 81912376 81912447 81912376 ID=Msa0708360-mRNA-1:exon:26956;Parent=Msa0708360-mRNA-1
chr4_4 exon 81912545 81912732 81912545 ID=Msa0708360-mRNA-1:exon:26955;Parent=Msa0708360-mRNA-1
chr4_4 exon 81912828 81913035 81912828 ID=Msa0708360-mRNA-1:exon:26954;Parent=Msa0708360-mRNA-1
chr4_4 exon 81913216 81913338 81913216 ID=Msa0708360-mRNA-1:exon:26953;Parent=Msa0708360-mRNA-1
chr4_4 exon 81913683 81913803 81913683 ID=Msa0708360-mRNA-1:exon:26952;Parent=Msa0708360-mRNA-1
chr4_4 exon 81914376 81914467 81914376 ID=Msa0708360-mRNA-1:exon:26951;Parent=Msa0708360-mRNA-1
chr4_4 exon 81915075 81915146 81915075 ID=Msa0708360-mRNA-1:exon:26950;Parent=Msa0708360-mRNA-1
chr4_4 exon 81915259 81915441 81915259 ID=Msa0708360-mRNA-1:exon:26949;Parent=Msa0708360-mRNA-1
chr4_4 exon 81915470 81915512 81915470 ID=Msa0708360-mRNA-1:exon:26948;Parent=Msa0708360-mRNA-1
chr4_4 five_prime_UTR 81915470 81915512 81915470 ID=Msa0708360-mRNA-1:five_prime_utr;Parent=Msa0708360-mRNA-1
chr4_4 five_prime_UTR 81915340 81915441 81915340 ID=Msa0708360-mRNA-1:five_prime_utr;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81915259 81915339 81915259 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81915075 81915146 81915075 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81914376 81914467 81914376 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81913683 81913803 81913683 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81913216 81913338 81913216 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81912828 81913035 81912828 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81912545 81912732 81912545 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81912376 81912447 81912376 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81912169 81912267 81912169 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81911990 81912070 81911990 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81910543 81910600 81910543 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 CDS 81909682 81909848 81909682 ID=Msa0708360-mRNA-1:cds;Parent=Msa0708360-mRNA-1
chr4_4 three_prime_UTR 81909376 81909681 81909376 ID=Msa0708360-mRNA-1:three_prime_utr;Parent=Msa0708360-mRNA-1
Gene Sequence

>Msa0708360

ATGAATTCTAACATGTTGCTGCGGCATAATGTGGTTAAACTCATGCGAAGATATCTAGAAGACATACATGGTTTTGTGGAGATTGAAACTCCAATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCGAGGAACATTCTATGCCTTGCCACAAAGCCCTCAGCTATTTAAGCAAATGCTAATGGTAGCTGGTTTTGATAAATATTATCAAGTAGCAAGATGTTTTCGGGATGAAGATCTAAGAGCTGATAGACAACCTGAGTTCACACAACTAGATATGGAGATGGCTTTTACTCCTTTAGAGGATATGTTGTCTCTTAATGAAGAGTTGATCAGAAAGGTTTTTCTTGAAATTAAGGGCGTGGAATTACCAAACCCTTTCCCCAGGCTTACATATGCTGAAGCAATGAATAGATATGGTTCGGACCGTCCAGATACCAGATTTGATCTAGAATTAAAAGATGTATCTGACATTTTCTCAGGGTCTTCCTTCAAGGTTTTCTCTGATTCCTTGGAGTGTGGTGGTGTTATTAAAGTAATTTGTGTACCTTCTGGTGCAAAAAAGTACTCAAATTCAGTTCTTAAGAAACCTGGTGCACAGGGTGGTATTTACAACGAAGCACACAAATCTGGTGCAAAGGGTTTACCTTTTCTCAAGATCACGGAGAATGGGGATATTGAGGGAATTTCTGCTTTAGTATCAAGTATGGATTCTGCAACTAGAGAGGATTTATTAAGGCGATGCTCTGCAGGACCAAGTGATCTGATTTTATTTGCAGTTGGTCATCATGCATCTGTAAATAAAACTCTAGATCGTCTTAGAGTTTATGTGGCTCATGAATTAGGTTTGATCGACCATGCCAGACATTCAATTTTGTGGATTACCGACTTTCCAATGTTTGAGTGGAATGATTCGGAGCAGAGGCTTGAGGCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAACAACCTTGCATCGGCTCGTGCATTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGCGGGGGGAGTTTGAGAATTTATAAACGCGACATACAACAAAAGGTTTTGGAGACTGTAGGCATCTCAATGGAGCAGGCTGAAGCTAAGTTTGGATATCTTCTTGAAGCTCTTGACATGGGGGCTCCGCCACATGGAGGCATAGCTTTTGGTCTGGACAGATTGGTTATGTTGCTAGCTGGGGCTAATTCAATCAGGGATGTCATTGCTTTCCCAAAAACAACAACTGCACAGTGTGCCCTCACGAGATCACCTTCCGAGGTGGATCCCCAACAGCTGAAAGATCTTTCAATCACTACATAG

Protein sequence

>Msa0708360

MNSNMLLRHNVVKLMRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRIQRGTFYALPQSPQLFKQMLMVAGFDKYYQVARCFRDEDLRADRQPEFTQLDMEMAFTPLEDMLSLNEELIRKVFLEIKGVELPNPFPRLTYAEAMNRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLECGGVIKVICVPSGAKKYSNSVLKKPGAQGGIYNEAHKSGAKGLPFLKITENGDIEGISALVSSMDSATREDLLRRCSAGPSDLILFAVGHHASVNKTLDRLRVYVAHELGLIDHARHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMNNLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLETVGISMEQAEAKFGYLLEALDMGAPPHGGIAFGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSITT*