AlfalfaGEDB | Msa0207570

M. sativa cultivar zhongmu-4 / Msa0207570

KEGG: K01092
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616
PFAM: PF00459.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207570	XP_013442522.1	97.714	350	8	0	1	350	1	350	0.0	713

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207570	sp\|Q94F00\|IMPL1_ARATH	71.739	368	84	3	3	350	4	371	0.0	544

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207570	A0A072TGR0	97.714	350	8	0	1	350	1	350	0.0	713

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0207570	0.807195	5.691693e-50	-8.615850e-47
Msa0060350	Msa0207570	0.814024	1.902092e-51	-8.615850e-47
Msa0143970	Msa0207570	0.811092	8.323882e-51	-8.615850e-47
Msa0162030	Msa0207570	0.811388	7.177266e-51	-8.615850e-47
Msa0162050	Msa0207570	0.807650	4.556789e-50	-8.615850e-47
Msa0207570	Msa0476180	0.806245	9.032868e-50	-8.615850e-47
Msa0207570	Msa0555980	0.810402	1.173340e-50	-8.615850e-47
Msa0207570	Msa0583930	0.801397	9.177638e-49	-8.615850e-47
Msa0207570	Msa0614400	0.807993	3.852165e-50	-8.615850e-47
Msa0207570	Msa0692910	0.802281	6.042921e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207570	MtrunA17_Chr2g0306101	97.714	350	8	0	1	350	1	350	0.0	713
Msa0207570	MtrunA17_Chr2g0290121	33.962	265	161	7	66	323	11	268	3.37e-38	137
Msa0207570	MtrunA17_Chr3g0145001	25.483	259	170	7	52	301	49	293	3.05e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207570	AT1G31190.1	71.739	368	84	3	3	350	4	371	0.0	544
Msa0207570	AT3G02870.1	35.685	241	142	6	78	312	22	255	6.83e-39	139
Msa0207570	AT3G02870.3	35.685	241	142	6	78	312	19	252	7.57e-39	139
Msa0207570	AT3G02870.2	34.855	241	142	7	78	312	22	253	1.07e-35	131
Msa0207570	AT4G39120.1	27.731	238	153	5	69	301	89	312	1.91e-19	88.6
Msa0207570	AT4G39120.2	27.731	238	153	5	69	301	118	341	2.20e-19	88.6

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Find 103 sgRNAs with CRISPR-Local

Find 623 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAATCTCTATTCCT+TGG	0.465199	2_1:-39926448	Msa0207570:five_prime_UTR
AAAACACAATCTCTATTCCT+TGG	0.465199	2_1:-39926533	Msa0207570:five_prime_UTR
AAAATGAGCTAAGAGATGGA+TGG	0.594168	2_1:+39926419	None:intergenic
AAAATGAGCTAAGAGATGGA+TGG	0.594168	2_1:+39926504	None:intergenic
AAACGGCGTGGTCCATGCTA+AGG	0.553110	2_1:-39916331	Msa0207570:intron
AAAGTCAAACCTCTCGAAGC+TGG	0.449719	2_1:-39926315	Msa0207570:CDS
AAATCCTACTGCTGCTACAG+TGG	0.541368	2_1:-39919050	Msa0207570:intron
AAATGAGCTAAGAGATGGAT+GGG	0.571584	2_1:+39926420	None:intergenic
AAATGAGCTAAGAGATGGAT+GGG	0.571584	2_1:+39926505	None:intergenic
AAGAATTTACGGATGTCAGC+AGG	0.448133	2_1:-39917143	Msa0207570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACAATCTCTATTCCT+TGG	-	chr2_1:39914915-39914934	Msa0207570:three_prime_UTR	30.0%
AAAACACAATCTCTATTCCT+TGG	-	chr2_1:39914915-39914934	Msa0207570:three_prime_UTR	30.0%
TGAAGAACAACTCTATTCAA+GGG	-	chr2_1:39915197-39915216	Msa0207570:CDS	30.0%
TTTAAGAGCAGTTGCATTAA+TGG	-	chr2_1:39915337-39915356	Msa0207570:intron	30.0%
TTAAGAGCAGTTGCATTAAT+GGG	-	chr2_1:39915338-39915357	Msa0207570:intron	30.0%
ATATAACCAACCAAGGTAAT+TGG	+	chr2_1:39915474-39915493	None:intergenic	30.0%
CCTTTATACGTAATATTCCT+TGG	+	chr2_1:39915525-39915544	None:intergenic	30.0%
CCAAGGAATATTACGTATAA+AGG	-	chr2_1:39915522-39915541	Msa0207570:intron	30.0%
GTATAAAGGATTAACTGACT+TGG	-	chr2_1:39915536-39915555	Msa0207570:intron	30.0%
AGATTGTGTACCTTTGAATT+AGG	-	chr2_1:39915709-39915728	Msa0207570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	39914901	39926569	39914901	ID=Msa0207570;Name=Msa0207570
chr2_1	mRNA	39914901	39926569	39914901	ID=Msa0207570-mRNA-1;Parent=Msa0207570;Name=Msa0207570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=162\|1\|1\|1\|1\|1\|10\|225\|350
chr2_1	exon	39914901	39915224	39914901	ID=Msa0207570-mRNA-1:exon:12444;Parent=Msa0207570-mRNA-1
chr2_1	exon	39916332	39916433	39916332	ID=Msa0207570-mRNA-1:exon:12443;Parent=Msa0207570-mRNA-1
chr2_1	exon	39916951	39917064	39916951	ID=Msa0207570-mRNA-1:exon:12442;Parent=Msa0207570-mRNA-1
chr2_1	exon	39917143	39917241	39917143	ID=Msa0207570-mRNA-1:exon:12441;Parent=Msa0207570-mRNA-1
chr2_1	exon	39917366	39917418	39917366	ID=Msa0207570-mRNA-1:exon:12440;Parent=Msa0207570-mRNA-1
chr2_1	exon	39917561	39917618	39917561	ID=Msa0207570-mRNA-1:exon:12439;Parent=Msa0207570-mRNA-1
chr2_1	exon	39919051	39919139	39919051	ID=Msa0207570-mRNA-1:exon:12438;Parent=Msa0207570-mRNA-1
chr2_1	exon	39919670	39919803	39919670	ID=Msa0207570-mRNA-1:exon:12437;Parent=Msa0207570-mRNA-1
chr2_1	exon	39925905	39925972	39925905	ID=Msa0207570-mRNA-1:exon:12436;Parent=Msa0207570-mRNA-1
chr2_1	exon	39926171	39926569	39926171	ID=Msa0207570-mRNA-1:exon:12435;Parent=Msa0207570-mRNA-1
chr2_1	five_prime_UTR	39926408	39926569	39926408	ID=Msa0207570-mRNA-1:five_prime_utr;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39926171	39926407	39926171	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39925905	39925972	39925905	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39919670	39919803	39919670	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39919051	39919139	39919051	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39917561	39917618	39917561	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39917366	39917418	39917366	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39917143	39917241	39917143	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39916951	39917064	39916951	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39916332	39916433	39916332	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	CDS	39915126	39915224	39915126	ID=Msa0207570-mRNA-1:cds;Parent=Msa0207570-mRNA-1
chr2_1	three_prime_UTR	39914901	39915125	39914901	ID=Msa0207570-mRNA-1:three_prime_utr;Parent=Msa0207570-mRNA-1

Gene Sequence

>Msa0207570

ATGATGTCAATTGTATTCTCCACCTCCGCAGCAGCTACAAAACTATTTCCTCCTACTACTTACCGCCTTCAAAGTCAAACCTCTCGAAGCTGGAGGCTGAAATCATCAACATCATGTAAGAACTCTTTGAAATCTGAAGAACAACTCTATTCAAGGGTTGGTGCACTCTCCACTGGACCCGTTCAACCTGCGATCCTCCTTCAAGTTGCCACAACTGCTGCTCAAACTGGTGCCAAGGTTGTGATGGATGCTGTTAATAAGCCAAGGAATATTACGTATAAAGGATTAACTGACTTGGTGACTGAGACCGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAGAAGAATTTTAAAGATCATCTTATTCTTGGGGAAGAAGGAGGCATCATAGGAGATGTAGCTTCCGATTATCTCTGGTGCATTGATCCCTTAGATGGGACAACAAACTTTGCACATGGCTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGAAATCCTACTGCTGCTACAGTGGTTGAGTTTGTTGGTGGTCCTATGTGTTGGAATACTCGCATTTTCACTGCAACTGCTGGTGGTGGAGCATTCTGCAACGGCCAAAGGATCGAAGTGAGTGCAACTAATCAGGTGGAACGATCTCTTCTAGTGACAGGTTTTGGGTATGAACACGATGAAGCCTGGGCTACTAACGTAGAATTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGGCTTGGTGCAGCTGCTGTGGACATGTGTCATGTGGCTTTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATGGTAGAGGAAGCTGGTGGCACAGTCTCTCGGATGGATGGCGGAAAATTTTGTGTTTTTGATAGATCTGTTTTGGTATCAAACGGCGTGGTCCATGCTAAGCTTCTGGAGAGAATTGGACCTGCAACAGAGGGCTTAAAAAGTAAGGGAATTGATTTTTCATTATGGTACAAACCTGAGGACTACAGAGCTGACGTTTAA

Protein sequence

>Msa0207570

MMSIVFSTSAAATKLFPPTTYRLQSQTSRSWRLKSSTSCKNSLKSEEQLYSRVGALSTGPVQPAILLQVATTAAQTGAKVVMDAVNKPRNITYKGLTDLVTETDKMSEAAILEVVKKNFKDHLILGEEGGIIGDVASDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPTAATVVEFVGGPMCWNTRIFTATAGGGAFCNGQRIEVSATNQVERSLLVTGFGYEHDEAWATNVELFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGKFCVFDRSVLVSNGVVHAKLLERIGPATEGLKSKGIDFSLWYKPEDYRADV*