AlfalfaGEDB | Msa0555980

M. sativa cultivar zhongmu-4 / Msa0555980

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555980	XP_003607803.1	88.218	331	8	1	1	300	1	331	0.0	586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555980	sp\|Q8X5K0\|MHPC_ECO57	26.255	259	142	8	73	288	35	287	9.82e-13	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555980	G7JHI3	88.218	331	8	1	1	300	1	331	0.0	586

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0555980	0.847254	1.299381e-59	-8.615850e-47
Msa0000500	Msa0555980	0.817997	2.466163e-52	-8.615850e-47
Msa0000780	Msa0555980	0.822844	1.906171e-53	-8.615850e-47
Msa0001460	Msa0555980	0.878584	2.495884e-69	-8.615850e-47
Msa0001540	Msa0555980	0.807242	5.561169e-50	-8.615850e-47
Msa0003470	Msa0555980	0.812594	3.919980e-51	-8.615850e-47
Msa0004350	Msa0555980	0.843571	1.291126e-58	-8.615850e-47
Msa0005160	Msa0555980	0.815346	9.692916e-52	-8.615850e-47
Msa0005690	Msa0555980	0.859728	3.383874e-63	-8.615850e-47
Msa0006050	Msa0555980	0.825786	3.877475e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555980	MtrunA17_Chr4g0043161	88.218	331	8	1	1	300	1	331	0.0	586
Msa0555980	MtrunA17_Chr5g0419131	72.760	279	45	1	53	300	9	287	2.91e-150	422
Msa0555980	MtrunA17_Chr8g0372991	38.793	116	68	3	68	183	94	206	1.09e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555980	AT1G13820.1	67.320	306	65	2	12	286	25	326	2.10e-148	420
Msa0555980	AT5G39220.1	56.731	312	101	3	8	285	13	324	7.17e-129	370
Msa0555980	AT5G39220.2	54.808	312	99	4	8	285	13	316	9.00e-121	349
Msa0555980	AT4G36530.2	36.111	108	67	2	68	175	94	199	6.63e-15	74.7
Msa0555980	AT4G36530.1	36.111	108	67	2	68	175	37	142	6.97e-15	74.3

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Find 93 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATGTAAAAGGACAAT+TGG	0.389663	4_1:-53981126	None:intergenic
AAAGGTTTAACTTACGGAAA+CGG	0.449434	4_1:-53979919	None:intergenic
AAGGTTTAACTTACGGAAAC+GGG	0.393487	4_1:-53979918	None:intergenic
AAGTGATGATGAAGATTGAG+TGG	0.658807	4_1:+53979673	Msa0555980:five_prime_UTR
AATCAGCAATAAGCTTGCAG+TGG	0.671390	4_1:+53984542	Msa0555980:CDS
ACATGGGCCATTGACATTCT+TGG	0.350651	4_1:+53981297	Msa0555980:CDS
ACCCCAACCAAGAATGTCAA+TGG	0.531301	4_1:-53981304	None:intergenic
ACCGCGGCATCCTCCCGCCA+TGG	0.573782	4_1:-53984266	None:intergenic
ACCTGTCAAAACCATGTAAA+AGG	0.301670	4_1:-53981134	None:intergenic
ACGACCTTGAATATGGGCAA+TGG	0.651406	4_1:-53979792	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATGTGTGGATGTCATAT+TGG	-	chr4_1:53980115-53980134	None:intergenic	30.0%
AATAGGATAATAGGATAGGA+TGG	+	chr4_1:53980337-53980356	Msa0555980:intron	30.0%
CTGAACATGTGTTTATAAGT+GGG	+	chr4_1:53980450-53980469	Msa0555980:intron	30.0%
TGAACATGTGTTTATAAGTG+GGG	+	chr4_1:53980451-53980470	Msa0555980:intron	30.0%
TCTTACAGTGAACAAATGAT+GGG	-	chr4_1:53980722-53980741	None:intergenic	30.0%
TTTAGGTCTCATCTTACTTA+AGG	+	chr4_1:53980753-53980772	Msa0555980:intron	30.0%
ATCTTACTTAAGGTCTTCTT+TGG	+	chr4_1:53980763-53980782	Msa0555980:intron	30.0%
AAACCATGTAAAAGGACAAT+TGG	-	chr4_1:53981129-53981148	None:intergenic	30.0%
GAAAGGAATGAACATAACAT+AGG	-	chr4_1:53981361-53981380	None:intergenic	30.0%
TGACTAAAATGAAGAGAGAA+AGG	-	chr4_1:53981378-53981397	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	53979671	53985128	53979671	ID=Msa0555980;Name=Msa0555980
chr4_1	mRNA	53979671	53985128	53979671	ID=Msa0555980-mRNA-1;Parent=Msa0555980;Name=Msa0555980-mRNA-1;_AED=0.33;_eAED=0.33;_QI=100\|1\|1\|1\|1\|1\|9\|298\|300
chr4_1	exon	53979671	53979926	53979671	ID=Msa0555980-mRNA-1:exon:15778;Parent=Msa0555980-mRNA-1
chr4_1	exon	53981060	53981154	53981060	ID=Msa0555980-mRNA-1:exon:15779;Parent=Msa0555980-mRNA-1
chr4_1	exon	53981242	53981339	53981242	ID=Msa0555980-mRNA-1:exon:15780;Parent=Msa0555980-mRNA-1
chr4_1	exon	53981429	53981478	53981429	ID=Msa0555980-mRNA-1:exon:15781;Parent=Msa0555980-mRNA-1
chr4_1	exon	53981767	53981862	53981767	ID=Msa0555980-mRNA-1:exon:15782;Parent=Msa0555980-mRNA-1
chr4_1	exon	53981982	53982071	53981982	ID=Msa0555980-mRNA-1:exon:15783;Parent=Msa0555980-mRNA-1
chr4_1	exon	53984242	53984337	53984242	ID=Msa0555980-mRNA-1:exon:15784;Parent=Msa0555980-mRNA-1
chr4_1	exon	53984498	53984563	53984498	ID=Msa0555980-mRNA-1:exon:15785;Parent=Msa0555980-mRNA-1
chr4_1	exon	53984675	53985128	53984675	ID=Msa0555980-mRNA-1:exon:15786;Parent=Msa0555980-mRNA-1
chr4_1	five_prime_UTR	53979671	53979770	53979671	ID=Msa0555980-mRNA-1:five_prime_utr;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53979771	53979926	53979771	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53981060	53981154	53981060	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53981242	53981339	53981242	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53981429	53981478	53981429	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53981767	53981862	53981767	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53981982	53982071	53981982	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53984242	53984337	53984242	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53984498	53984563	53984498	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	CDS	53984675	53984830	53984675	ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1	three_prime_UTR	53984831	53985128	53984831	ID=Msa0555980-mRNA-1:three_prime_utr;Parent=Msa0555980-mRNA-1

Gene Sequence

>Msa0555980

ATGGTTGCTCTGTTTTCTGTGCCATTGCCCATATTCAAGGTCGTTGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTCTCGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAGAAACTTCCTTCCTGCGATGTGGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGATTGGCCGCTTGCATTGTTTATTGCCATGGCGGGAGGATGCCGCGGTTAATTTTATGATCAGTGGTGGCTACAATGTTGCTTCGCAGATAAAAATGGTAAAGCAGAAAACACTCATAATTTGGGGGGAGAATGACCGCATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGTGGTCACCTTCCTCATGTTGAAAGACCGGATTCTGTTGTGAAACTCATAAAGGAATTTGTTCCGAAGGATACAAAGACAGTAAATCAATATGTTTCATCATTATGA

Protein sequence

>Msa0555980

MVALFSVPLPIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGLETWAIDILGWGFSDLEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGIGRLHCLLPWREDAAVNFMISGGYNVASQIKMVKQKTLIIWGENDRIISNKLAVQLHCELPDAIIRQIPDCGHLPHVERPDSVVKLIKEFVPKDTKTVNQYVSSL*