AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555980 MtrunA17_Chr4g0043161 88.218 331 8 1 1 300 1 331 0.0 586
Msa0555980 MtrunA17_Chr5g0419131 72.760 279 45 1 53 300 9 287 2.91e-150 422
Msa0555980 MtrunA17_Chr8g0372991 38.793 116 68 3 68 183 94 206 1.09e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555980 AT1G13820.1 67.320 306 65 2 12 286 25 326 2.10e-148 420
Msa0555980 AT5G39220.1 56.731 312 101 3 8 285 13 324 7.17e-129 370
Msa0555980 AT5G39220.2 54.808 312 99 4 8 285 13 316 9.00e-121 349
Msa0555980 AT4G36530.2 36.111 108 67 2 68 175 94 199 6.63e-15 74.7
Msa0555980 AT4G36530.1 36.111 108 67 2 68 175 37 142 6.97e-15 74.3

Find 93 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAATCAATTAAAATTA+AGG 0.156564 4_1:-53985096 None:intergenic
AGCAGAAAACACTCATAATT+TGG 0.205221 4_1:+53984502 Msa0555980:CDS
GGTTGGGGTTTCTCTGATTT+AGG 0.215057 4_1:+53981318 Msa0555980:CDS
TTCAGCAACGACCTTGAATA+TGG 0.221184 4_1:-53979799 None:intergenic
TTAGTTCCCTTCACTGAAAA+TGG 0.239430 4_1:+53979752 Msa0555980:exon
TTGATAGCACATACAGCTTC+TGG 0.256899 4_1:-53981854 None:intergenic
GGTGACCACAATCGGGTATT+TGG 0.260697 4_1:-53984710 None:intergenic
TGAATGTCCATTCAAGTATA+TGG 0.269679 4_1:-53985070 None:intergenic
GGCCATTGACATTCTTGGTT+GGG 0.269914 4_1:+53981302 Msa0555980:CDS
GCAGAAAACACTCATAATTT+GGG 0.293612 4_1:+53984503 Msa0555980:CDS
ACCTGTCAAAACCATGTAAA+AGG 0.301670 4_1:-53981134 None:intergenic
TTGATTCTGTTGACGTCTTT+AGG 0.328912 4_1:-53979852 None:intergenic
CCTAGAGCGGCAGCTTATGC+TGG 0.339470 4_1:+53982048 Msa0555980:CDS
ACATGGGCCATTGACATTCT+TGG 0.350651 4_1:+53981297 Msa0555980:CDS
AAACCATGTAAAAGGACAAT+TGG 0.389663 4_1:-53981126 None:intergenic
AAGGTTTAACTTACGGAAAC+GGG 0.393487 4_1:-53979918 None:intergenic
TGTGCCATTGCCCATATTCA+AGG 0.398371 4_1:+53979788 Msa0555980:CDS
TTTACTGTCTTTGTATCCTT+CGG 0.403960 4_1:-53984786 None:intergenic
TATAAATCCATATACTTGAA+TGG 0.409935 4_1:+53985063 Msa0555980:three_prime_UTR
TGTTCAGCTCATGCTTAGAA+TGG 0.410367 4_1:+53981235 Msa0555980:intron
TTCTGTTGTGAAACTCATAA+AGG 0.412198 4_1:+53984755 Msa0555980:CDS
ATGAGGAAGGTGACCACAAT+CGG 0.412670 4_1:-53984718 None:intergenic
GCCATTGACATTCTTGGTTG+GGG 0.416519 4_1:+53981303 Msa0555980:CDS
GCTTGCATTGTTTATTGCCA+TGG 0.417309 4_1:+53984249 Msa0555980:CDS
ATGAGTTTCACAACAGAATC+CGG 0.424950 4_1:-53984750 None:intergenic
CAGAGAAATGACAGAATGTT+TGG 0.437973 4_1:+53984858 Msa0555980:three_prime_UTR
GGGCCATTGACATTCTTGGT+TGG 0.442632 4_1:+53981301 Msa0555980:CDS
TTCTCTGTCAGAATGGCAAA+AGG 0.444450 4_1:-53984842 None:intergenic
AAAGGTTTAACTTACGGAAA+CGG 0.449434 4_1:-53979919 None:intergenic
TATCAATTCAGTGGGGCTGC+TGG 0.457316 4_1:+53984926 Msa0555980:three_prime_UTR
ATTTGGCGTATAATTGCATC+AGG 0.462626 4_1:-53984693 None:intergenic
CTGTCATTTCTCTGTCAGAA+TGG 0.470108 4_1:-53984849 None:intergenic
ATATTGGTTGGTCCAAGCCT+TGG 0.474251 4_1:+53981797 Msa0555980:CDS
CTAGAGCGGCAGCTTATGCT+GGG 0.475042 4_1:+53982049 Msa0555980:CDS
TTGAATGGTTATCAATTCAG+TGG 0.478474 4_1:+53984917 Msa0555980:three_prime_UTR
AGTAGTGATGGAGCTTTGAA+TGG 0.478812 4_1:+53984902 Msa0555980:three_prime_UTR
CCGCTCTAGGTAAAGTTGCT+AGG 0.483024 4_1:-53982035 None:intergenic
TTCAGTGAAGGGAACTAAGC+TGG 0.484861 4_1:-53979747 None:intergenic
TTCACACAACTACTCATGAT+AGG 0.489264 4_1:-53981078 None:intergenic
GTTGACGTCTTTAGGAAGAA+AGG 0.491857 4_1:-53979844 None:intergenic
TCAGCAACGACCTTGAATAT+GGG 0.493870 4_1:-53979798 None:intergenic
AGGAAGCTGGTCTCGAGACA+TGG 0.494222 4_1:+53981280 Msa0555980:CDS
CCTTCCTCATGTTGAAAGAC+CGG 0.504688 4_1:+53984731 Msa0555980:CDS
CCAGCATAAGCTGCCGCTCT+AGG 0.515122 4_1:-53982048 None:intergenic
TATCCATTGCTTGAGGAAGC+TGG 0.515669 4_1:+53981267 Msa0555980:CDS
CTAGTGGAATCATTGAGTTA+TGG 0.517618 4_1:+53984952 Msa0555980:three_prime_UTR
TGAATGGTTATCAATTCAGT+GGG 0.519888 4_1:+53984918 Msa0555980:three_prime_UTR
GTGGGGCTGCTGGTCACTAG+TGG 0.520636 4_1:+53984936 Msa0555980:three_prime_UTR
ACCCCAACCAAGAATGTCAA+TGG 0.531301 4_1:-53981304 None:intergenic
CATAAAGGAATTTGTTCCGA+AGG 0.534304 4_1:+53984770 Msa0555980:CDS
GCATTGTTTATTGCCATGGC+GGG 0.543754 4_1:+53984253 Msa0555980:CDS
TCGCTCGAACTCTCGCTACA+CGG 0.547927 4_1:+53979883 Msa0555980:CDS
ATTCAAAGCTCCATCACTAC+TGG 0.551805 4_1:-53984900 None:intergenic
GATGCTAGTGTATATACAGA+AGG 0.551943 4_1:+53982003 Msa0555980:CDS
ACGTCTTTAGGAAGAAAGGA+AGG 0.559625 4_1:-53979840 None:intergenic
AGTGTATATACAGAAGGGAC+AGG 0.561208 4_1:+53982009 Msa0555980:CDS
GTAGCGAGAGTTCGAGCGAA+AGG 0.562295 4_1:-53979879 None:intergenic
GCAACAGCAGAACCAAGGCT+TGG 0.568008 4_1:-53981809 None:intergenic
GCGCTTTGATACCACATCGC+AGG 0.568479 4_1:-53981441 None:intergenic
TAGCGAGAGTTCGAGCGAAA+GGG 0.570769 4_1:-53979878 None:intergenic
TGAGGAAGGTGACCACAATC+GGG 0.572360 4_1:-53984717 None:intergenic
ACCGCGGCATCCTCCCGCCA+TGG 0.573782 4_1:-53984266 None:intergenic
TCTCTGTCAGAATGGCAAAA+GGG 0.576525 4_1:-53984841 None:intergenic
TGCATTGTTTATTGCCATGG+CGG 0.577319 4_1:+53984252 Msa0555980:CDS
TTGTTTATTGCCATGGCGGG+AGG 0.581617 4_1:+53984256 Msa0555980:CDS
GAAGCCACTGGTGCAGAACA+AGG 0.584513 4_1:+53981098 Msa0555980:CDS
GAGTAGTTGTGTGAAGCCAC+TGG 0.590963 4_1:+53981086 Msa0555980:CDS
AGACCAGCTTCCTCAAGCAA+TGG 0.594235 4_1:-53981270 None:intergenic
CGTCTTTAGGAAGAAAGGAA+GGG 0.596147 4_1:-53979839 None:intergenic
CTTGGACCAACCAATATCAT+CGG 0.599779 4_1:-53981791 None:intergenic
ATAATTGACTGCAAAGTCGA+TGG 0.611577 4_1:-53981831 None:intergenic
CAGAAAACACTCATAATTTG+GGG 0.615099 4_1:+53984504 Msa0555980:CDS
CCTAGCAACTTTACCTAGAG+CGG 0.619639 4_1:+53982035 Msa0555980:CDS
CCGGTCTTTCAACATGAGGA+AGG 0.621810 4_1:-53984731 None:intergenic
GGAAGCTGGTCTCGAGACAT+GGG 0.629492 4_1:+53981281 Msa0555980:CDS
CAAGCTTATTGCTGATTATG+CGG 0.631427 4_1:-53984536 None:intergenic
GCCATGGCGGGAGGATGCCG+CGG 0.632024 4_1:+53984265 Msa0555980:CDS
GAATCCGGTCTTTCAACATG+AGG 0.633980 4_1:-53984735 None:intergenic
ATACACATATCCATTGCTTG+AGG 0.640800 4_1:+53981260 Msa0555980:CDS
ATGCTAGTGTATATACAGAA+GGG 0.645627 4_1:+53982004 Msa0555980:CDS
ATGGCAATAAACAATGCAAG+CGG 0.648461 4_1:-53984247 None:intergenic
GAAACTTCCTTCCTGCGATG+TGG 0.650174 4_1:+53981430 Msa0555980:CDS
ATACGCCAAATACCCGATTG+TGG 0.650226 4_1:+53984705 Msa0555980:CDS
ACGACCTTGAATATGGGCAA+TGG 0.651406 4_1:-53979792 None:intergenic
CGATGGCAACAGCAGAACCA+AGG 0.654068 4_1:-53981814 None:intergenic
TTTGATACCACATCGCAGGA+AGG 0.657996 4_1:-53981437 None:intergenic
AAGTGATGATGAAGATTGAG+TGG 0.658807 4_1:+53979673 Msa0555980:five_prime_UTR
AATCAGCAATAAGCTTGCAG+TGG 0.671390 4_1:+53984542 Msa0555980:CDS
GAAAACACTCATAATTTGGG+GGG 0.683422 4_1:+53984506 Msa0555980:CDS
AGAAAACACTCATAATTTGG+GGG 0.722458 4_1:+53984505 Msa0555980:CDS
ACTGATCATAAAATTAACCG+CGG 0.725390 4_1:-53984282 None:intergenic
TAGAGCGGCAGCTTATGCTG+GGG 0.733422 4_1:+53982050 Msa0555980:CDS
GAATGGTTATCAATTCAGTG+GGG 0.739821 4_1:+53984919 Msa0555980:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTTTTTTTTTTAAA+CGG - chr4_1:53980952-53980971 None:intergenic 0.0%
!! ACATATATAATTATATTCAA+AGG + chr4_1:53980128-53980147 Msa0555980:intron 10.0%
!! TTGTAATAATTGTTTATAAT+AGG + chr4_1:53980320-53980339 Msa0555980:intron 10.0%
!!! ATTTATATACAACTTTAAAA+TGG - chr4_1:53981551-53981570 None:intergenic 10.0%
!!! AATTAAATTTCATTTTAGTA+GGG - chr4_1:53982768-53982787 None:intergenic 10.0%
!!! AAATTAAATTTCATTTTAGT+AGG - chr4_1:53982769-53982788 None:intergenic 10.0%
!! ATATATAATCTTATATAGAT+TGG + chr4_1:53984224-53984243 Msa0555980:intron 10.0%
!! ATTAAATTATCGATAAGAAA+AGG - chr4_1:53979940-53979959 None:intergenic 15.0%
!! TGAATATAATTATATATGTG+TGG - chr4_1:53980127-53980146 None:intergenic 15.0%
!! ATTGTTTATAATAGGATAAT+AGG + chr4_1:53980328-53980347 Msa0555980:intron 15.0%
!! AAATACTAAATGAAATGAAA+AGG - chr4_1:53980380-53980399 None:intergenic 15.0%
!!! TACTTTCTAATTTTTATCAT+TGG + chr4_1:53981584-53981603 Msa0555980:intron 15.0%
!!! TAAGAAATCAGATATTTTAT+AGG + chr4_1:53981630-53981649 Msa0555980:intron 15.0%
!! AAAAAAAATCTTCAAAAGTT+GGG - chr4_1:53981910-53981929 None:intergenic 15.0%
!! TAAAAAAAATCTTCAAAAGT+TGG - chr4_1:53981911-53981930 None:intergenic 15.0%
!!! ATTAAATTTCATTTTAGTAG+GGG - chr4_1:53982767-53982786 None:intergenic 15.0%
!!! ATAAATTCATTATGTACTTT+TGG - chr4_1:53982918-53982937 None:intergenic 15.0%
!!! TAATTTTGTTAAGAATTCAA+GGG + chr4_1:53983359-53983378 Msa0555980:intron 15.0%
!!! ATCCAATTTTTTTAATTTAG+AGG + chr4_1:53983839-53983858 Msa0555980:intron 15.0%
!! ATCCTCTAAATTAAAAAAAT+TGG - chr4_1:53983844-53983863 None:intergenic 15.0%
!! TTATATCAAAATAATGATCT+TGG + chr4_1:53984592-53984611 Msa0555980:intron 15.0%
!!! ATAAGAAAAGGTTTAACTTA+CGG - chr4_1:53979928-53979947 None:intergenic 20.0%
!! TAATTATATTCAAAGGTTTG+AGG + chr4_1:53980135-53980154 Msa0555980:intron 20.0%
!! TTATAATAGGATAATAGGAT+AGG + chr4_1:53980333-53980352 Msa0555980:intron 20.0%
!!! TATTTTTCTTCCTCATATTT+TGG + chr4_1:53980401-53980420 Msa0555980:intron 20.0%
!!! ATTTTTCTTCCTCATATTTT+GGG + chr4_1:53980402-53980421 Msa0555980:intron 20.0%
!!! TCCATTAGGTTTTTTATATT+TGG - chr4_1:53980520-53980539 None:intergenic 20.0%
!!! AACACATTGTTTATTGATTT+AGG + chr4_1:53980547-53980566 Msa0555980:intron 20.0%
!!! ACACATTGTTTATTGATTTA+GGG + chr4_1:53980548-53980567 Msa0555980:intron 20.0%
!!! ATATTTGCTATGTTTCAAAA+TGG - chr4_1:53980670-53980689 None:intergenic 20.0%
!! TATTGCTTAATTCTTGATTA+AGG + chr4_1:53980800-53980819 Msa0555980:intron 20.0%
!! TATTTGCATATAATTCAAAC+AGG + chr4_1:53981038-53981057 Msa0555980:intron 20.0%
!!! CACATTTTTATCCTATATAT+TGG + chr4_1:53982587-53982606 Msa0555980:intron 20.0%
!! GAGTTAAAAATCCAATATAT+AGG - chr4_1:53982601-53982620 None:intergenic 20.0%
!! AGTACATAATGAATTTATCT+TGG + chr4_1:53982920-53982939 Msa0555980:intron 20.0%
!!! ATTTAAAGCTTCAAAATGTT+GGG + chr4_1:53983091-53983110 Msa0555980:intron 20.0%
!!! GTAATTTTGTTAAGAATTCA+AGG + chr4_1:53983358-53983377 Msa0555980:intron 20.0%
!!! AATTTTGTTAAGAATTCAAG+GGG + chr4_1:53983360-53983379 Msa0555980:intron 20.0%
!! ATTATTGCAATAATGTGAAA+AGG - chr4_1:53983577-53983596 None:intergenic 20.0%
!!! ACTAGAATTTTTTACTTTCA+TGG + chr4_1:53983627-53983646 Msa0555980:intron 20.0%
!!! CTAGAATTTTTTACTTTCAT+GGG + chr4_1:53983628-53983647 Msa0555980:intron 20.0%
!!! TAGAATTTTTTACTTTCATG+GGG + chr4_1:53983629-53983648 Msa0555980:intron 20.0%
!!! TTATGACAAAATAGGATTTT+TGG - chr4_1:53984016-53984035 None:intergenic 20.0%
!! TGTGAATTAATATGATATGA+AGG - chr4_1:53984147-53984166 None:intergenic 20.0%
!!! ATTTTTGTTAGAAAACACAA+TGG + chr4_1:53984384-53984403 Msa0555980:intron 20.0%
!! ATATACTTACTAAAAAGATG+TGG + chr4_1:53984455-53984474 Msa0555980:intron 20.0%
!! TATAAATCCATATACTTGAA+TGG + chr4_1:53985063-53985082 Msa0555980:three_prime_UTR 20.0%
! AGGTGCATATAATATAAGAA+AGG - chr4_1:53979976-53979995 None:intergenic 25.0%
! AGAGTATACTACAATATAAC+AGG - chr4_1:53979996-53980015 None:intergenic 25.0%
! GTTATATTGTAGTATACTCT+TGG + chr4_1:53979996-53980015 Msa0555980:intron 25.0%
! GCCAAATATAAAAAACCTAA+TGG + chr4_1:53980516-53980535 Msa0555980:intron 25.0%
! ATGTGTTAGTTATATCCATT+AGG - chr4_1:53980534-53980553 None:intergenic 25.0%
! ATCAAGAATTAAGCAATAGT+GGG - chr4_1:53980798-53980817 None:intergenic 25.0%
! AATCAAGAATTAAGCAATAG+TGG - chr4_1:53980799-53980818 None:intergenic 25.0%
! AGAAATTCATTAATCTGTGA+AGG - chr4_1:53981678-53981697 None:intergenic 25.0%
! GGAAGTAAAATAAATAAGTG+TGG - chr4_1:53981703-53981722 None:intergenic 25.0%
! TTATCTAGAAAGCTATTGTT+AGG + chr4_1:53982128-53982147 Msa0555980:intron 25.0%
!!! AAGTTTTATGAACTATATGG+TGG - chr4_1:53982374-53982393 None:intergenic 25.0%
!!! CGAAAGTTTTATGAACTATA+TGG - chr4_1:53982377-53982396 None:intergenic 25.0%
! TTCATAAAACTTTCGATACA+AGG + chr4_1:53982382-53982401 Msa0555980:intron 25.0%
!!! CAGAAGTGATTTCTAAAATA+TGG - chr4_1:53982852-53982871 None:intergenic 25.0%
! CATAATGAATTTATCTTGGA+TGG + chr4_1:53982924-53982943 Msa0555980:intron 25.0%
!!! CAACATTTTGAAGCTTTAAA+TGG - chr4_1:53983092-53983111 None:intergenic 25.0%
!! CATTTAAAGCTTCAAAATGT+TGG + chr4_1:53983090-53983109 Msa0555980:intron 25.0%
! AAATTACCCTAAATACAATG+TGG - chr4_1:53983345-53983364 None:intergenic 25.0%
!!! GTTGTTTTTAAGAACTTGTT+TGG + chr4_1:53983401-53983420 Msa0555980:intron 25.0%
! AGTAAAAAATTCTAGTGAAG+AGG - chr4_1:53983623-53983642 None:intergenic 25.0%
!!! AAATAGGATTTTTGGATTCT+TGG - chr4_1:53984008-53984027 None:intergenic 25.0%
!!! AACACTTGTTATGACAAAAT+AGG - chr4_1:53984024-53984043 None:intergenic 25.0%
!! ATTTTGTCATAACAAGTGTT+AGG + chr4_1:53984024-53984043 Msa0555980:intron 25.0%
! ACATCATAAATTTGTAATGC+CGG - chr4_1:53984347-53984366 None:intergenic 25.0%
! AAAGGTTTAACTTACGGAAA+CGG - chr4_1:53979922-53979941 None:intergenic 30.0%
TATATGTGTGGATGTCATAT+TGG - chr4_1:53980115-53980134 None:intergenic 30.0%
!! CGAATTTCTAAGTGTTTTTG+TGG + chr4_1:53980167-53980186 Msa0555980:intron 30.0%
! TGAGATGACTTGCATAATAA+AGG - chr4_1:53980212-53980231 None:intergenic 30.0%
AATAGGATAATAGGATAGGA+TGG + chr4_1:53980337-53980356 Msa0555980:intron 30.0%
CTGAACATGTGTTTATAAGT+GGG + chr4_1:53980450-53980469 Msa0555980:intron 30.0%
TGAACATGTGTTTATAAGTG+GGG + chr4_1:53980451-53980470 Msa0555980:intron 30.0%
!! ATTGTTTATTGATTTAGGGC+CGG + chr4_1:53980552-53980571 Msa0555980:intron 30.0%
TCTTACAGTGAACAAATGAT+GGG - chr4_1:53980722-53980741 None:intergenic 30.0%
TTTAGGTCTCATCTTACTTA+AGG + chr4_1:53980753-53980772 Msa0555980:intron 30.0%
ATCTTACTTAAGGTCTTCTT+TGG + chr4_1:53980763-53980782 Msa0555980:intron 30.0%
! AGTTAAAGAGTTGATTGACA+AGG + chr4_1:53980881-53980900 Msa0555980:intron 30.0%
! AATCCAATTGTCCTTTTACA+TGG + chr4_1:53981123-53981142 Msa0555980:CDS 30.0%
AAACCATGTAAAAGGACAAT+TGG - chr4_1:53981129-53981148 None:intergenic 30.0%
!! TTTATTTCTGAAGTTACCCT+TGG + chr4_1:53981195-53981214 Msa0555980:intron 30.0%
GAAAGGAATGAACATAACAT+AGG - chr4_1:53981361-53981380 None:intergenic 30.0%
TGACTAAAATGAAGAGAGAA+AGG - chr4_1:53981378-53981397 None:intergenic 30.0%
TTAATTAGCATACAAGTACC+TGG - chr4_1:53981478-53981497 None:intergenic 30.0%
GGTTATCATATTGTGTGATT+CGG + chr4_1:53981605-53981624 Msa0555980:intron 30.0%
! TAGGCTATCTTCTAAAGAAA+TGG + chr4_1:53981649-53981668 Msa0555980:intron 30.0%
!! ATTGGTTTATCTACCAGTTT+TGG + chr4_1:53981750-53981769 Msa0555980:intron 30.0%
TAATGTAGGATTTCCAAAAC+TGG - chr4_1:53981766-53981785 None:intergenic 30.0%
!!! TATCATCGGCTTTTTAATGT+AGG - chr4_1:53981780-53981799 None:intergenic 30.0%
CATTAAAAAGCCGATGATAT+TGG + chr4_1:53981781-53981800 Msa0555980:CDS 30.0%
ATGCTAGTGTATATACAGAA+GGG + chr4_1:53982004-53982023 Msa0555980:CDS 30.0%
ATGTAGAAACTGTTAAGAGT+GGG - chr4_1:53982318-53982337 None:intergenic 30.0%
ATCTTCATTCCAAAACATGA+AGG + chr4_1:53982526-53982545 Msa0555980:intron 30.0%
TTGAGAATGTAGTTGCTTAA+AGG - chr4_1:53982825-53982844 None:intergenic 30.0%
!!! GTACTTTTGGTTTGTATGAT+TGG - chr4_1:53982905-53982924 None:intergenic 30.0%
!! AATGTTGGGTTTTATGACTT+TGG + chr4_1:53983105-53983124 Msa0555980:intron 30.0%
TTAGTTGTCTTTCCAACTAT+GGG + chr4_1:53983310-53983329 Msa0555980:intron 30.0%
ATGGATACCACATTGTATTT+AGG + chr4_1:53983335-53983354 Msa0555980:intron 30.0%
TGGATACCACATTGTATTTA+GGG + chr4_1:53983336-53983355 Msa0555980:intron 30.0%
!! AGGGGAAGTATCAAAATATT+AGG + chr4_1:53983378-53983397 Msa0555980:intron 30.0%
!! GGGGAAGTATCAAAATATTA+GGG + chr4_1:53983379-53983398 Msa0555980:intron 30.0%
! GACCTGATTTTTGTATAAGT+AGG + chr4_1:53983481-53983500 Msa0555980:intron 30.0%
CACCTACTTATACAAAAATC+AGG - chr4_1:53983486-53983505 None:intergenic 30.0%
! ATTTTTGTATAAGTAGGTGC+CGG + chr4_1:53983487-53983506 Msa0555980:intron 30.0%
! TAGTTTGCATATACACGTAA+CGG - chr4_1:53983758-53983777 None:intergenic 30.0%
AACTTACATTTGTCCAATCA+AGG - chr4_1:53983814-53983833 None:intergenic 30.0%
!! AATATGATATGAAGGTGCTA+TGG - chr4_1:53984139-53984158 None:intergenic 30.0%
ACTGATCATAAAATTAACCG+CGG - chr4_1:53984285-53984304 None:intergenic 30.0%
! GTTAATTTTATGATCAGTGG+TGG + chr4_1:53984287-53984306 Msa0555980:CDS 30.0%
GCAGATAAAAATGGTATTTC+CGG + chr4_1:53984325-53984344 Msa0555980:intron 30.0%
! GGCTTTCAAATTTGTTTAAC+AGG + chr4_1:53984476-53984495 Msa0555980:intron 30.0%
AGCAGAAAACACTCATAATT+TGG + chr4_1:53984502-53984521 Msa0555980:CDS 30.0%
GCAGAAAACACTCATAATTT+GGG + chr4_1:53984503-53984522 Msa0555980:CDS 30.0%
CAGAAAACACTCATAATTTG+GGG + chr4_1:53984504-53984523 Msa0555980:CDS 30.0%
AGAAAACACTCATAATTTGG+GGG + chr4_1:53984505-53984524 Msa0555980:CDS 30.0%
TTCTGTTGTGAAACTCATAA+AGG + chr4_1:53984755-53984774 Msa0555980:CDS 30.0%
TTTACTGTCTTTGTATCCTT+CGG - chr4_1:53984789-53984808 None:intergenic 30.0%
!!! GTTTGGTGTTTTTCCAAAAA+AGG + chr4_1:53984875-53984894 Msa0555980:three_prime_UTR 30.0%
TTGAATGGTTATCAATTCAG+TGG + chr4_1:53984917-53984936 Msa0555980:three_prime_UTR 30.0%
TGAATGGTTATCAATTCAGT+GGG + chr4_1:53984918-53984937 Msa0555980:three_prime_UTR 30.0%
TGAATGTCCATTCAAGTATA+TGG - chr4_1:53985073-53985092 None:intergenic 30.0%
! AAGTGATGATGAAGATTGAG+TGG + chr4_1:53979673-53979692 Msa0555980:five_prime_UTR 35.0%
!!! CTAGTTAGCTCCAGTTTTTT+TGG + chr4_1:53979715-53979734 Msa0555980:five_prime_UTR 35.0%
GTAATAGCAGCCAAAAAAAC+TGG - chr4_1:53979728-53979747 None:intergenic 35.0%
TTAGTTCCCTTCACTGAAAA+TGG + chr4_1:53979752-53979771 Msa0555980:exon 35.0%
TTGATTCTGTTGACGTCTTT+AGG - chr4_1:53979855-53979874 None:intergenic 35.0%
! AAGGTTTAACTTACGGAAAC+GGG - chr4_1:53979921-53979940 None:intergenic 35.0%
TATTGTAGTATACTCTTGGC+TGG + chr4_1:53980000-53980019 Msa0555980:intron 35.0%
CTTCAGATTGAAGATGTATC+TGG + chr4_1:53980063-53980082 Msa0555980:intron 35.0%
TTACTCTGAATTACGTGGAA+AGG + chr4_1:53980268-53980287 Msa0555980:intron 35.0%
TACTCTGAATTACGTGGAAA+GGG + chr4_1:53980269-53980288 Msa0555980:intron 35.0%
ATAGGATAGGATGGAAACTA+TGG + chr4_1:53980346-53980365 Msa0555980:intron 35.0%
CCACTTATAAACACATGTTC+AGG - chr4_1:53980452-53980471 None:intergenic 35.0%
CCTGAACATGTGTTTATAAG+TGG + chr4_1:53980449-53980468 Msa0555980:intron 35.0%
GAACATGTGTTTATAAGTGG+GGG + chr4_1:53980452-53980471 Msa0555980:intron 35.0%
!!! TTTTACAAAACCGACTTGCA+AGG - chr4_1:53980487-53980506 None:intergenic 35.0%
GTCTTACAGTGAACAAATGA+TGG - chr4_1:53980723-53980742 None:intergenic 35.0%
!! GTAAGACTTTTCCTAGCTTT+AGG + chr4_1:53980736-53980755 Msa0555980:intron 35.0%
ACTCAACAGTACTTGTGTAA+GGG + chr4_1:53980825-53980844 Msa0555980:intron 35.0%
! TGTATAGATAGCTTGATGAC+TGG + chr4_1:53980850-53980869 Msa0555980:intron 35.0%
! GTATAGATAGCTTGATGACT+GGG + chr4_1:53980851-53980870 Msa0555980:intron 35.0%
! TATAGATAGCTTGATGACTG+GGG + chr4_1:53980852-53980871 Msa0555980:intron 35.0%
! TAAAGAGTTGATTGACAAGG+AGG + chr4_1:53980884-53980903 Msa0555980:intron 35.0%
GGCAATGTTAGTATTATGCT+GGG - chr4_1:53980930-53980949 None:intergenic 35.0%
TTCACACAACTACTCATGAT+AGG - chr4_1:53981081-53981100 None:intergenic 35.0%
!!! TCCTTTTACATGGTTTTGAC+AGG + chr4_1:53981133-53981152 Msa0555980:CDS 35.0%
ACCTGTCAAAACCATGTAAA+AGG - chr4_1:53981137-53981156 None:intergenic 35.0%
ACAGGTGCTAAAAAATATGC+AGG + chr4_1:53981151-53981170 Msa0555980:intron 35.0%
AAATATGCAGGAGACAGAAT+TGG + chr4_1:53981163-53981182 Msa0555980:intron 35.0%
TAAGCATGAGCTGAACAATA+AGG - chr4_1:53981232-53981251 None:intergenic 35.0%
ATACACATATCCATTGCTTG+AGG + chr4_1:53981260-53981279 Msa0555980:CDS 35.0%
AAAAAGCCGATGATATTGGT+TGG + chr4_1:53981785-53981804 Msa0555980:CDS 35.0%
ATAATTGACTGCAAAGTCGA+TGG - chr4_1:53981834-53981853 None:intergenic 35.0%
GATGCTAGTGTATATACAGA+AGG + chr4_1:53982003-53982022 Msa0555980:CDS 35.0%
!!! GGGATAAAGGCTTTTTAAGT+AGG - chr4_1:53982087-53982106 None:intergenic 35.0%
AGATAATTGACAGTGATGTG+TGG - chr4_1:53982114-53982133 None:intergenic 35.0%
! CGTAAAGAGAGTATAAGACA+CGG + chr4_1:53982152-53982171 Msa0555980:intron 35.0%
! GTAAAGAGAGTATAAGACAC+GGG + chr4_1:53982153-53982172 Msa0555980:intron 35.0%
GATCTTCACGTAGAATCTTA+AGG + chr4_1:53982179-53982198 Msa0555980:intron 35.0%
! GTCACATTTTCATCCAATGT+CGG + chr4_1:53982210-53982229 Msa0555980:intron 35.0%
TGTAGAAACTGTTAAGAGTG+GGG - chr4_1:53982317-53982336 None:intergenic 35.0%
GATGTAGAAACTGTTAAGAG+TGG - chr4_1:53982319-53982338 None:intergenic 35.0%
! ATTCCAAAACATGAAGGCAT+TGG + chr4_1:53982532-53982551 Msa0555980:intron 35.0%
! TAACCAATGCCTTCATGTTT+TGG - chr4_1:53982538-53982557 None:intergenic 35.0%
AGCTAGGGAACATTGATATA+AGG - chr4_1:53982659-53982678 None:intergenic 35.0%
TTATATCAATGTTCCCTAGC+TGG + chr4_1:53982658-53982677 Msa0555980:intron 35.0%
!! GTAGTTGCTTAAAGGTATCA+TGG - chr4_1:53982817-53982836 None:intergenic 35.0%
!!! TTTTGGTTTGTATGATTGGC+AGG - chr4_1:53982901-53982920 None:intergenic 35.0%
TAGCTCACATCACATGTAAA+TGG - chr4_1:53982998-53983017 None:intergenic 35.0%
GCAGCTTGAAATTTGAATCA+AGG - chr4_1:53983055-53983074 None:intergenic 35.0%
CATAGTTGGAAAGACAACTA+AGG - chr4_1:53983311-53983330 None:intergenic 35.0%
CTTAGTTGTCTTTCCAACTA+TGG + chr4_1:53983309-53983328 Msa0555980:intron 35.0%
TATCAAATGCTCATCCAACA+AGG - chr4_1:53983435-53983454 None:intergenic 35.0%
AAAAGGACTGGAAACAGAAA+AGG - chr4_1:53983560-53983579 None:intergenic 35.0%
TGCAATAATGTGAAAAGGAC+TGG - chr4_1:53983572-53983591 None:intergenic 35.0%
AGTTTGCATATACACGTAAC+GGG - chr4_1:53983757-53983776 None:intergenic 35.0%
! ACTGAAAGATATGTTGGTGA+AGG - chr4_1:53983786-53983805 None:intergenic 35.0%
! GCTAGTACTGAAAGATATGT+TGG - chr4_1:53983792-53983811 None:intergenic 35.0%
ATAGCTCATAACAAACCGTT+TGG + chr4_1:53983949-53983968 Msa0555980:intron 35.0%
TAGCTCATAACAAACCGTTT+GGG + chr4_1:53983950-53983969 Msa0555980:intron 35.0%
AAGAGATTAGATGCTTAGGA+AGG - chr4_1:53984102-53984121 None:intergenic 35.0%
TGGTAAGAGATTAGATGCTT+AGG - chr4_1:53984106-53984125 None:intergenic 35.0%
AAGCATCTAATCTCTTACCA+AGG + chr4_1:53984106-53984125 Msa0555980:intron 35.0%
ATGGCAATAAACAATGCAAG+CGG - chr4_1:53984250-53984269 None:intergenic 35.0%
! GCGGTTAATTTTATGATCAG+TGG + chr4_1:53984284-53984303 Msa0555980:CDS 35.0%
! TGTTGCTTCGCAGATAAAAA+TGG + chr4_1:53984316-53984335 Msa0555980:CDS 35.0%
GAAAACACTCATAATTTGGG+GGG + chr4_1:53984506-53984525 Msa0555980:CDS 35.0%
! CAAGCTTATTGCTGATTATG+CGG - chr4_1:53984539-53984558 None:intergenic 35.0%
ATTTGGCGTATAATTGCATC+AGG - chr4_1:53984696-53984715 None:intergenic 35.0%
ATGAGTTTCACAACAGAATC+CGG - chr4_1:53984753-53984772 None:intergenic 35.0%
! CATAAAGGAATTTGTTCCGA+AGG + chr4_1:53984770-53984789 Msa0555980:CDS 35.0%
CAGAGAAATGACAGAATGTT+TGG + chr4_1:53984858-53984877 Msa0555980:three_prime_UTR 35.0%
!!! ATCACTACTGGTTCCTTTTT+TGG - chr4_1:53984891-53984910 None:intergenic 35.0%
AAAAAAGGAACCAGTAGTGA+TGG + chr4_1:53984890-53984909 Msa0555980:three_prime_UTR 35.0%
GAATGGTTATCAATTCAGTG+GGG + chr4_1:53984919-53984938 Msa0555980:three_prime_UTR 35.0%
CTAGTGGAATCATTGAGTTA+TGG + chr4_1:53984952-53984971 Msa0555980:three_prime_UTR 35.0%
! GAGCAACCATTTTCAGTGAA+GGG - chr4_1:53979761-53979780 None:intergenic 40.0%
! AGAGCAACCATTTTCAGTGA+AGG - chr4_1:53979762-53979781 None:intergenic 40.0%
TCAGCAACGACCTTGAATAT+GGG - chr4_1:53979801-53979820 None:intergenic 40.0%
TTCAGCAACGACCTTGAATA+TGG - chr4_1:53979802-53979821 None:intergenic 40.0%
! CGTCTTTAGGAAGAAAGGAA+GGG - chr4_1:53979842-53979861 None:intergenic 40.0%
! ACGTCTTTAGGAAGAAAGGA+AGG - chr4_1:53979843-53979862 None:intergenic 40.0%
! GTTGACGTCTTTAGGAAGAA+AGG - chr4_1:53979847-53979866 None:intergenic 40.0%
!!! TGGCTGGTTTTAGACTTTAG+TGG + chr4_1:53980016-53980035 Msa0555980:intron 40.0%
!!! GGTTTTAGACTTTAGTGGAC+CGG + chr4_1:53980021-53980040 Msa0555980:intron 40.0%
TGTCTGTGCTACGTATTTAC+CGG - chr4_1:53980043-53980062 None:intergenic 40.0%
AGTCATCTCATGCATCAGAA+AGG + chr4_1:53980222-53980241 Msa0555980:intron 40.0%
CAATTGCCTTAACCTTAGAC+CGG - chr4_1:53980574-53980593 None:intergenic 40.0%
! CAGTGAACAAATGATGGGAA+GGG - chr4_1:53980717-53980736 None:intergenic 40.0%
! ACAGTGAACAAATGATGGGA+AGG - chr4_1:53980718-53980737 None:intergenic 40.0%
GTAAGATGAGACCTAAAGCT+AGG - chr4_1:53980750-53980769 None:intergenic 40.0%
CACTCAACAGTACTTGTGTA+AGG + chr4_1:53980824-53980843 Msa0555980:intron 40.0%
CTCAACAGTACTTGTGTAAG+GGG + chr4_1:53980826-53980845 Msa0555980:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG - chr4_1:53980923-53980942 None:intergenic 40.0%
GTTAGTATTATGCTGGGAGT+GGG - chr4_1:53980924-53980943 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG - chr4_1:53980925-53980944 None:intergenic 40.0%
GGGCAATGTTAGTATTATGC+TGG - chr4_1:53980931-53980950 None:intergenic 40.0%
TAAGGAGGAGTGAAATCCAA+GGG - chr4_1:53981214-53981233 None:intergenic 40.0%
ATAAGGAGGAGTGAAATCCA+AGG - chr4_1:53981215-53981234 None:intergenic 40.0%
TGTTCAGCTCATGCTTAGAA+TGG + chr4_1:53981235-53981254 Msa0555980:intron 40.0%
CTTGGACCAACCAATATCAT+CGG - chr4_1:53981794-53981813 None:intergenic 40.0%
! TTGATAGCACATACAGCTTC+TGG - chr4_1:53981857-53981876 None:intergenic 40.0%
CCTGAAAAATGACCAGATCA+TGG - chr4_1:53981963-53981982 None:intergenic 40.0%
!!! CCATGATCTGGTCATTTTTC+AGG + chr4_1:53981960-53981979 Msa0555980:intron 40.0%
!!! TGATCTGGTCATTTTTCAGG+TGG + chr4_1:53981963-53981982 Msa0555980:intron 40.0%
AGTGTATATACAGAAGGGAC+AGG + chr4_1:53982009-53982028 Msa0555980:CDS 40.0%
GACTTCTAACTCACACTTGA+TGG + chr4_1:53982232-53982251 Msa0555980:intron 40.0%
GTAGAAACTGTTAAGAGTGG+GGG - chr4_1:53982316-53982335 None:intergenic 40.0%
ATATGGTGGTTAGATGACGT+GGG - chr4_1:53982360-53982379 None:intergenic 40.0%
TATATGGTGGTTAGATGACG+TGG - chr4_1:53982361-53982380 None:intergenic 40.0%
AGATCTCCACATTAGGCTAA+AGG + chr4_1:53982476-53982495 Msa0555980:intron 40.0%
! GAATTATCTAGCTCCAGCTA+GGG - chr4_1:53982674-53982693 None:intergenic 40.0%
! TGAATTATCTAGCTCCAGCT+AGG - chr4_1:53982675-53982694 None:intergenic 40.0%
!! GCTTAAAGGTATCATGGAGA+GGG - chr4_1:53982811-53982830 None:intergenic 40.0%
!! TGCTTAAAGGTATCATGGAG+AGG - chr4_1:53982812-53982831 None:intergenic 40.0%
AAGCAATTGCTAACTCCAAG+AGG - chr4_1:53982957-53982976 None:intergenic 40.0%
TGGAGTTAGCAATTGCTTAC+TGG + chr4_1:53982959-53982978 Msa0555980:intron 40.0%
! CACTCAAGCAGTAATTTGCA+AGG + chr4_1:53983018-53983037 Msa0555980:intron 40.0%
CATCACTAGTAAAGTACACG+TGG - chr4_1:53983175-53983194 None:intergenic 40.0%
ACAATGATACATAGCCTAGG+AGG - chr4_1:53983203-53983222 None:intergenic 40.0%
CTGACAATGATACATAGCCT+AGG - chr4_1:53983206-53983225 None:intergenic 40.0%
GGATGTCAGAGATAATAGAG+CGG - chr4_1:53983290-53983309 None:intergenic 40.0%
GTTTGGAAAGTTGTCCTTGT+TGG + chr4_1:53983418-53983437 Msa0555980:intron 40.0%
AGTATAATAACGCCAAGCAC+CGG - chr4_1:53983509-53983528 None:intergenic 40.0%
GAGATAAGTATGAGAGGATG+AGG + chr4_1:53983653-53983672 Msa0555980:intron 40.0%
! ATTCAAGTTACTCTCACCAC+TGG + chr4_1:53983695-53983714 Msa0555980:intron 40.0%
! CTGATTTAAAACAGAGCCAG+TGG - chr4_1:53983714-53983733 None:intergenic 40.0%
!!! CACTGGCTCTGTTTTAAATC+AGG + chr4_1:53983712-53983731 Msa0555980:intron 40.0%
!! CTTTCAGTACTAGCCTTGAT+TGG + chr4_1:53983798-53983817 Msa0555980:intron 40.0%
CAAAGTGTGCATTTCCCAAA+CGG - chr4_1:53983967-53983986 None:intergenic 40.0%
GCTTGCATTGTTTATTGCCA+TGG + chr4_1:53984249-53984268 Msa0555980:CDS 40.0%
TGCATTGTTTATTGCCATGG+CGG + chr4_1:53984252-53984271 Msa0555980:CDS 40.0%
TTAGTTGTACCACTAAGCTG+AGG - chr4_1:53984424-53984443 None:intergenic 40.0%
AATCAGCAATAAGCTTGCAG+TGG + chr4_1:53984542-53984561 Msa0555980:CDS 40.0%
TCTCTGTCAGAATGGCAAAA+GGG - chr4_1:53984844-53984863 None:intergenic 40.0%
TTCTCTGTCAGAATGGCAAA+AGG - chr4_1:53984845-53984864 None:intergenic 40.0%
! CTGTCATTTCTCTGTCAGAA+TGG - chr4_1:53984852-53984871 None:intergenic 40.0%
ATTCAAAGCTCCATCACTAC+TGG - chr4_1:53984903-53984922 None:intergenic 40.0%
!! AGTAGTGATGGAGCTTTGAA+TGG + chr4_1:53984902-53984921 Msa0555980:three_prime_UTR 40.0%
TTCAGTGAAGGGAACTAAGC+TGG - chr4_1:53979750-53979769 None:intergenic 45.0%
! TGTGCCATTGCCCATATTCA+AGG + chr4_1:53979788-53979807 Msa0555980:CDS 45.0%
ACGACCTTGAATATGGGCAA+TGG - chr4_1:53979795-53979814 None:intergenic 45.0%
CCACGTAATTCAGAGTAACG+TGG - chr4_1:53980266-53980285 None:intergenic 45.0%
CCACGTTACTCTGAATTACG+TGG + chr4_1:53980263-53980282 Msa0555980:intron 45.0%
!! ATATTTTGGGAGTCGCGCAT+TGG + chr4_1:53980415-53980434 Msa0555980:intron 45.0%
! ATTGATTTAGGGCCGGTCTA+AGG + chr4_1:53980559-53980578 Msa0555980:intron 45.0%
GCAATTGAAGCCCTTGCTTT+AGG + chr4_1:53980587-53980606 Msa0555980:intron 45.0%
AAATTGACGCGCTACGTAGA+AGG - chr4_1:53980634-53980653 None:intergenic 45.0%
! TTTTCCTTGTTCTGCACCAG+TGG - chr4_1:53981105-53981124 None:intergenic 45.0%
GCATGAGCTGAACAATAAGG+AGG - chr4_1:53981229-53981248 None:intergenic 45.0%
TATCCATTGCTTGAGGAAGC+TGG + chr4_1:53981267-53981286 Msa0555980:CDS 45.0%
ACATGGGCCATTGACATTCT+TGG + chr4_1:53981297-53981316 Msa0555980:CDS 45.0%
GGCCATTGACATTCTTGGTT+GGG + chr4_1:53981302-53981321 Msa0555980:CDS 45.0%
GCCATTGACATTCTTGGTTG+GGG + chr4_1:53981303-53981322 Msa0555980:CDS 45.0%
ACCCCAACCAAGAATGTCAA+TGG - chr4_1:53981307-53981326 None:intergenic 45.0%
GGTTGGGGTTTCTCTGATTT+AGG + chr4_1:53981318-53981337 Msa0555980:CDS 45.0%
TTTGATACCACATCGCAGGA+AGG - chr4_1:53981440-53981459 None:intergenic 45.0%
! AAAGCGCGAACACTTTTACC+AGG + chr4_1:53981457-53981476 Msa0555980:CDS 45.0%
CCTCAGCAACAAAGCTATCA+AGG - chr4_1:53981525-53981544 None:intergenic 45.0%
!! CCTTGATAGCTTTGTTGCTG+AGG + chr4_1:53981522-53981541 Msa0555980:intron 45.0%
!! TGATAGCTTTGTTGCTGAGG+TGG + chr4_1:53981525-53981544 Msa0555980:intron 45.0%
TCAACACAGAGCGAAACAAG+TGG - chr4_1:53981724-53981743 None:intergenic 45.0%
ACTTGTTTCGCTCTGTGTTG+AGG + chr4_1:53981723-53981742 Msa0555980:intron 45.0%
CTTGTTTCGCTCTGTGTTGA+GGG + chr4_1:53981724-53981743 Msa0555980:intron 45.0%
! ATATTGGTTGGTCCAAGCCT+TGG + chr4_1:53981797-53981816 Msa0555980:CDS 45.0%
CTAGTGACTATGCCATGATC+TGG + chr4_1:53981948-53981967 Msa0555980:intron 45.0%
CCTAGCAACTTTACCTAGAG+CGG + chr4_1:53982035-53982054 Msa0555980:CDS 45.0%
GTGAGTTAGAAGTCCGACAT+TGG - chr4_1:53982226-53982245 None:intergenic 45.0%
! GTGGATTGACTCACACTTGA+GGG - chr4_1:53982279-53982298 None:intergenic 45.0%
!! AGTGGATTGACTCACACTTG+AGG - chr4_1:53982280-53982299 None:intergenic 45.0%
TGGTTGCCTTTAGCCTAATG+TGG - chr4_1:53982485-53982504 None:intergenic 45.0%
TTGGATGGCTCATAACCTCT+TGG + chr4_1:53982939-53982958 Msa0555980:intron 45.0%
CTAGTGATGTCTATCCTCCT+AGG + chr4_1:53983186-53983205 Msa0555980:intron 45.0%
! GTCTTTCCAACTATGGGCTA+TGG + chr4_1:53983316-53983335 Msa0555980:intron 45.0%
TGGTATCCATAGCCCATAGT+TGG - chr4_1:53983325-53983344 None:intergenic 45.0%
TGGGGAGAGATAAGTATGAG+AGG + chr4_1:53983647-53983666 Msa0555980:intron 45.0%
! GGTGCTATGGTTGATATCCT+TGG - chr4_1:53984126-53984145 None:intergenic 45.0%
GCATTGTTTATTGCCATGGC+GGG + chr4_1:53984253-53984272 Msa0555980:CDS 45.0%
CGAAAGAATCCTCAGCTTAG+TGG + chr4_1:53984412-53984431 Msa0555980:intron 45.0%
ATACGCCAAATACCCGATTG+TGG + chr4_1:53984705-53984724 Msa0555980:CDS 45.0%
ATGAGGAAGGTGACCACAAT+CGG - chr4_1:53984721-53984740 None:intergenic 45.0%
CCTTCCTCATGTTGAAAGAC+CGG + chr4_1:53984731-53984750 Msa0555980:CDS 45.0%
GAATCCGGTCTTTCAACATG+AGG - chr4_1:53984738-53984757 None:intergenic 45.0%
!!! TATATTTTTTTTTTTTAAAC+GGG - chr4_1:53980951-53980970 None:intergenic 5.0%
!!! ATTTAATTTAATCATTTTTT+TGG + chr4_1:53982780-53982799 Msa0555980:intron 5.0%
!!! TTTAATTTAATCATTTTTTT+GGG + chr4_1:53982781-53982800 Msa0555980:intron 5.0%
!! ATTAAAATCAATTAAAATTA+AGG - chr4_1:53985099-53985118 None:intergenic 5.0%
TAGCGAGAGTTCGAGCGAAA+GGG - chr4_1:53979881-53979900 None:intergenic 50.0%
TGCGCGACTCCCAAAATATG+AGG - chr4_1:53980414-53980433 None:intergenic 50.0%
GCAATCCTCACCTTGCAAGT+CGG + chr4_1:53980474-53980493 Msa0555980:intron 50.0%
!! CAAAACCGACTTGCAAGGTG+AGG - chr4_1:53980482-53980501 None:intergenic 50.0%
! TTAGGGCCGGTCTAAGGTTA+AGG + chr4_1:53980565-53980584 Msa0555980:intron 50.0%
! AAGCCCTTGCTTTAGGTCTC+TGG + chr4_1:53980594-53980613 Msa0555980:intron 50.0%
CGTAGAAGGTGGTGTGAGTA+GGG - chr4_1:53980620-53980639 None:intergenic 50.0%
ACGTAGAAGGTGGTGTGAGT+AGG - chr4_1:53980621-53980640 None:intergenic 50.0%
! AGATAGCTTGATGACTGGGG+CGG + chr4_1:53980855-53980874 Msa0555980:intron 50.0%
GAGTAGTTGTGTGAAGCCAC+TGG + chr4_1:53981086-53981105 Msa0555980:CDS 50.0%
AGACCAGCTTCCTCAAGCAA+TGG - chr4_1:53981273-53981292 None:intergenic 50.0%
GGGCCATTGACATTCTTGGT+TGG + chr4_1:53981301-53981320 Msa0555980:CDS 50.0%
GAAACTTCCTTCCTGCGATG+TGG + chr4_1:53981430-53981449 Msa0555980:CDS 50.0%
GCTCTGTGTTGAGGGTGAAT+TGG + chr4_1:53981732-53981751 Msa0555980:intron 50.0%
! CCGCTCTAGGTAAAGTTGCT+AGG - chr4_1:53982038-53982057 None:intergenic 50.0%
GATGTGTGGCTGAGGGATAA+AGG - chr4_1:53982100-53982119 None:intergenic 50.0%
TGACAGTGATGTGTGGCTGA+GGG - chr4_1:53982107-53982126 None:intergenic 50.0%
TTGACAGTGATGTGTGGCTG+AGG - chr4_1:53982108-53982127 None:intergenic 50.0%
GGGGGAACATATGTGATGAG+TGG - chr4_1:53982298-53982317 None:intergenic 50.0%
ATCACAGGCGTTTGGGCTAA+AGG - chr4_1:53982417-53982436 None:intergenic 50.0%
CAGTGGTATCACAGGCGTTT+GGG - chr4_1:53982424-53982443 None:intergenic 50.0%
ACAGTGGTATCACAGGCGTT+TGG - chr4_1:53982425-53982444 None:intergenic 50.0%
AACGCCTGTGATACCACTGT+TGG + chr4_1:53982425-53982444 Msa0555980:intron 50.0%
ACGCCTGTGATACCACTGTT+GGG + chr4_1:53982426-53982445 Msa0555980:intron 50.0%
TGACCCAACAGTGGTATCAC+AGG - chr4_1:53982432-53982451 None:intergenic 50.0%
ATACCACTGTTGGGTCACGA+TGG + chr4_1:53982435-53982454 Msa0555980:intron 50.0%
TACCACTGTTGGGTCACGAT+GGG + chr4_1:53982436-53982455 Msa0555980:intron 50.0%
! GGAGATCTCACCCGTGTTTT+AGG - chr4_1:53982464-53982483 None:intergenic 50.0%
ACGGGTGAGATCTCCACATT+AGG + chr4_1:53982469-53982488 Msa0555980:intron 50.0%
TGTTGTCCAAACCACTTGCG+TGG - chr4_1:53982505-53982524 None:intergenic 50.0%
!! TATAAGTAGGTGCCGGTGCT+TGG + chr4_1:53983494-53983513 Msa0555980:intron 50.0%
! TTGTTTATTGCCATGGCGGG+AGG + chr4_1:53984256-53984275 Msa0555980:CDS 50.0%
GGTGACCACAATCGGGTATT+TGG - chr4_1:53984713-53984732 None:intergenic 50.0%
TGAGGAAGGTGACCACAATC+GGG - chr4_1:53984720-53984739 None:intergenic 50.0%
CCGGTCTTTCAACATGAGGA+AGG - chr4_1:53984734-53984753 None:intergenic 50.0%
TATCAATTCAGTGGGGCTGC+TGG + chr4_1:53984926-53984945 Msa0555980:three_prime_UTR 50.0%
GTAGCGAGAGTTCGAGCGAA+AGG - chr4_1:53979882-53979901 None:intergenic 55.0%
TCGCTCGAACTCTCGCTACA+CGG + chr4_1:53979883-53979902 Msa0555980:CDS 55.0%
GGGCCAGAGACCTAAAGCAA+GGG - chr4_1:53980600-53980619 None:intergenic 55.0%
AGGGCCAGAGACCTAAAGCA+AGG - chr4_1:53980601-53980620 None:intergenic 55.0%
TTGACGCGCTACGTAGAAGG+TGG - chr4_1:53980631-53980650 None:intergenic 55.0%
! GATAGCTTGATGACTGGGGC+GGG + chr4_1:53980856-53980875 Msa0555980:intron 55.0%
! ATAGCTTGATGACTGGGGCG+GGG + chr4_1:53980857-53980876 Msa0555980:intron 55.0%
GAAGCCACTGGTGCAGAACA+AGG + chr4_1:53981098-53981117 Msa0555980:CDS 55.0%
! AGGAAGCTGGTCTCGAGACA+TGG + chr4_1:53981280-53981299 Msa0555980:CDS 55.0%
! GGAAGCTGGTCTCGAGACAT+GGG + chr4_1:53981281-53981300 Msa0555980:CDS 55.0%
GCGCTTTGATACCACATCGC+AGG - chr4_1:53981444-53981463 None:intergenic 55.0%
GCAACAGCAGAACCAAGGCT+TGG - chr4_1:53981812-53981831 None:intergenic 55.0%
CGATGGCAACAGCAGAACCA+AGG - chr4_1:53981817-53981836 None:intergenic 55.0%
CTAGAGCGGCAGCTTATGCT+GGG + chr4_1:53982049-53982068 Msa0555980:CDS 55.0%
TAGAGCGGCAGCTTATGCTG+GGG + chr4_1:53982050-53982069 Msa0555980:CDS 55.0%
ACCACTGTTGGGTCACGATG+GGG + chr4_1:53982437-53982456 Msa0555980:intron 55.0%
CACGATGGGGGCCTAAAACA+CGG + chr4_1:53982450-53982469 Msa0555980:intron 55.0%
ACGATGGGGGCCTAAAACAC+GGG + chr4_1:53982451-53982470 Msa0555980:intron 55.0%
GCTAAAGGCAACCACGCAAG+TGG + chr4_1:53982491-53982510 Msa0555980:intron 55.0%
AGGCAACCACGCAAGTGGTT+TGG + chr4_1:53982496-53982515 Msa0555980:intron 55.0%
! TAGCTTGATGACTGGGGCGG+GGG + chr4_1:53980858-53980877 Msa0555980:intron 60.0%
CCAGCATAAGCTGCCGCTCT+AGG - chr4_1:53982051-53982070 None:intergenic 60.0%
CCTAGAGCGGCAGCTTATGC+TGG + chr4_1:53982048-53982067 Msa0555980:CDS 60.0%
CCACTGTTGGGTCACGATGG+GGG + chr4_1:53982438-53982457 Msa0555980:intron 60.0%
CCCCCATCGTGACCCAACAG+TGG - chr4_1:53982441-53982460 None:intergenic 65.0%
GTGGGGCTGCTGGTCACTAG+TGG + chr4_1:53984936-53984955 Msa0555980:three_prime_UTR 65.0%
! GCCATGGCGGGAGGATGCCG+CGG + chr4_1:53984265-53984284 Msa0555980:CDS 75.0%
ACCGCGGCATCCTCCCGCCA+TGG - chr4_1:53984269-53984288 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53979671 53985128 53979671 ID=Msa0555980;Name=Msa0555980
chr4_1 mRNA 53979671 53985128 53979671 ID=Msa0555980-mRNA-1;Parent=Msa0555980;Name=Msa0555980-mRNA-1;_AED=0.33;_eAED=0.33;_QI=100|1|1|1|1|1|9|298|300
chr4_1 exon 53979671 53979926 53979671 ID=Msa0555980-mRNA-1:exon:15778;Parent=Msa0555980-mRNA-1
chr4_1 exon 53981060 53981154 53981060 ID=Msa0555980-mRNA-1:exon:15779;Parent=Msa0555980-mRNA-1
chr4_1 exon 53981242 53981339 53981242 ID=Msa0555980-mRNA-1:exon:15780;Parent=Msa0555980-mRNA-1
chr4_1 exon 53981429 53981478 53981429 ID=Msa0555980-mRNA-1:exon:15781;Parent=Msa0555980-mRNA-1
chr4_1 exon 53981767 53981862 53981767 ID=Msa0555980-mRNA-1:exon:15782;Parent=Msa0555980-mRNA-1
chr4_1 exon 53981982 53982071 53981982 ID=Msa0555980-mRNA-1:exon:15783;Parent=Msa0555980-mRNA-1
chr4_1 exon 53984242 53984337 53984242 ID=Msa0555980-mRNA-1:exon:15784;Parent=Msa0555980-mRNA-1
chr4_1 exon 53984498 53984563 53984498 ID=Msa0555980-mRNA-1:exon:15785;Parent=Msa0555980-mRNA-1
chr4_1 exon 53984675 53985128 53984675 ID=Msa0555980-mRNA-1:exon:15786;Parent=Msa0555980-mRNA-1
chr4_1 five_prime_UTR 53979671 53979770 53979671 ID=Msa0555980-mRNA-1:five_prime_utr;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53979771 53979926 53979771 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53981060 53981154 53981060 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53981242 53981339 53981242 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53981429 53981478 53981429 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53981767 53981862 53981767 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53981982 53982071 53981982 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53984242 53984337 53984242 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53984498 53984563 53984498 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 CDS 53984675 53984830 53984675 ID=Msa0555980-mRNA-1:cds;Parent=Msa0555980-mRNA-1
chr4_1 three_prime_UTR 53984831 53985128 53984831 ID=Msa0555980-mRNA-1:three_prime_utr;Parent=Msa0555980-mRNA-1
Gene Sequence

>Msa0555980

ATGGTTGCTCTGTTTTCTGTGCCATTGCCCATATTCAAGGTCGTTGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTCTCGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAGAAACTTCCTTCCTGCGATGTGGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGATTGGCCGCTTGCATTGTTTATTGCCATGGCGGGAGGATGCCGCGGTTAATTTTATGATCAGTGGTGGCTACAATGTTGCTTCGCAGATAAAAATGGTAAAGCAGAAAACACTCATAATTTGGGGGGAGAATGACCGCATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGTGGTCACCTTCCTCATGTTGAAAGACCGGATTCTGTTGTGAAACTCATAAAGGAATTTGTTCCGAAGGATACAAAGACAGTAAATCAATATGTTTCATCATTATGA

Protein sequence

>Msa0555980

MVALFSVPLPIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGLETWAIDILGWGFSDLEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGIGRLHCLLPWREDAAVNFMISGGYNVASQIKMVKQKTLIIWGENDRIISNKLAVQLHCELPDAIIRQIPDCGHLPHVERPDSVVKLIKEFVPKDTKTVNQYVSSL*