AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060350 MtrunA17_Chr1g0160041 97.848 697 14 1 1 697 1 696 0.0 1396
Msa0060350 MtrunA17_Chr3g0124631 73.286 700 180 3 1 696 1 697 0.0 1060
Msa0060350 MtrunA17_Chr3g0120731 62.787 696 252 4 5 696 35 727 0.0 897
Msa0060350 MtrunA17_Chr1g0205711 34.206 649 375 11 57 696 80 685 3.39e-116 364
Msa0060350 MtrunA17_Chr1g0194371 33.539 647 382 14 62 697 46 655 5.15e-104 332
Msa0060350 MtrunA17_Chr5g0396691 33.231 653 387 15 56 697 42 656 1.94e-99 319
Msa0060350 MtrunA17_Chr5g0396711 32.772 653 390 15 56 697 42 656 7.42e-97 313
Msa0060350 MtrunA17_Chr4g0034181 32.125 607 369 14 104 695 73 651 1.18e-95 309
Msa0060350 MtrunA17_Chr8g0388081 31.803 610 373 11 104 697 13 595 1.33e-95 307
Msa0060350 MtrunA17_Chr7g0270221 32.198 646 344 15 57 688 41 606 2.47e-93 303
Msa0060350 MtrunA17_Chr1g0162621 31.097 611 371 15 104 695 74 653 6.03e-87 286
Msa0060350 MtrunA17_Chr3g0121931 26.000 650 381 16 109 695 107 719 1.13e-45 174
Msa0060350 MtrunA17_Chr3g0121951 26.480 642 385 21 109 695 105 714 3.70e-42 163
Msa0060350 MtrunA17_Chr8g0377991 25.502 647 390 18 109 695 109 723 1.02e-37 150
Msa0060350 MtrunA17_Chr4g0039791 29.942 344 159 15 251 580 204 479 1.52e-22 102
Msa0060350 MtrunA17_Chr5g0409791 26.434 488 253 23 118 579 78 485 3.78e-22 101
Msa0060350 MtrunA17_Chr5g0409771 28.286 350 171 16 251 587 198 480 2.43e-20 95.5
Msa0060350 MtrunA17_Chr4g0072561 24.425 565 332 17 107 651 57 546 2.42e-18 89.0
Msa0060350 MtrunA17_Chr1g0157401 27.761 335 174 13 251 579 205 477 2.32e-17 85.9
Msa0060350 MtrunA17_Chr8g0353341 26.211 351 188 11 235 580 197 481 2.42e-16 82.8
Msa0060350 MtrunA17_Chr6g0471921 25.970 335 180 10 249 579 162 432 6.58e-16 81.3
Msa0060350 MtrunA17_Chr5g0395431 33.529 170 87 8 422 579 349 504 2.93e-13 73.2
Msa0060350 MtrunA17_Chr2g0327341 32.335 167 90 9 422 579 304 456 4.09e-13 72.4
Msa0060350 MtrunA17_Chr5g0433231 33.540 161 90 5 444 593 322 476 4.15e-13 72.4
Msa0060350 MtrunA17_Chr1g0180541 30.723 166 96 7 422 579 311 465 8.34e-13 71.6
Msa0060350 MtrunA17_Chr4g0028411 29.907 214 124 9 422 620 307 509 9.33e-13 71.2
Msa0060350 MtrunA17_Chr5g0433221 41.905 105 55 3 489 593 378 476 2.30e-12 70.1
Msa0060350 MtrunA17_Chr3g0116271 35.570 149 80 7 422 564 323 461 1.23e-11 67.8
Msa0060350 MtrunA17_Chr5g0433241 50.000 76 32 3 503 578 391 460 1.31e-11 67.8
Msa0060350 MtrunA17_Chr1g0180551 32.484 157 93 6 428 579 390 538 1.57e-11 67.8
Msa0060350 MtrunA17_Chr3g0109731 32.934 167 90 6 425 578 306 463 6.48e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060350 AT1G77590.1 71.879 697 189 4 1 696 1 691 0.0 1050
Msa0060350 AT1G77590.2 78.611 547 114 1 150 696 2 545 0.0 909
Msa0060350 AT2G04350.2 62.408 681 248 5 20 696 44 720 0.0 877
Msa0060350 AT2G04350.1 62.408 681 248 5 20 696 44 720 0.0 877
Msa0060350 AT5G27600.1 34.776 647 374 13 57 696 83 688 1.03e-122 382
Msa0060350 AT3G05970.1 34.884 645 374 12 57 695 83 687 1.60e-114 360
Msa0060350 AT2G47240.1 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0060350 AT2G47240.2 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0060350 AT2G47240.3 32.881 663 381 15 48 695 39 652 1.63e-98 317
Msa0060350 AT2G47240.4 33.662 609 363 12 102 695 11 593 9.69e-98 313
Msa0060350 AT4G11030.1 31.343 670 405 15 40 697 31 657 2.12e-97 315
Msa0060350 AT4G23850.1 31.880 665 396 16 46 697 37 657 1.39e-95 310
Msa0060350 AT1G64400.1 31.115 646 394 14 62 695 49 655 1.41e-94 307
Msa0060350 AT1G49430.1 30.603 647 400 12 62 696 49 658 1.87e-93 304
Msa0060350 AT1G49430.2 30.143 491 294 12 62 540 49 502 2.67e-62 217
Msa0060350 AT3G23790.1 26.521 641 387 20 109 695 111 721 1.07e-44 171
Msa0060350 AT4G14070.1 25.077 646 381 18 109 696 127 727 1.12e-41 162
Msa0060350 AT4G19010.1 30.928 388 187 19 251 620 205 529 2.98e-27 117
Msa0060350 AT1G20500.1 26.570 414 219 16 251 644 198 546 9.29e-21 97.1
Msa0060350 AT1G20510.1 28.162 419 205 18 229 620 162 511 3.25e-19 92.4
Msa0060350 AT1G65060.1 24.742 485 270 17 110 579 77 481 1.15e-18 90.5
Msa0060350 AT1G20510.2 29.268 369 174 16 229 579 162 461 2.35e-18 89.0
Msa0060350 AT1G65060.2 24.681 470 260 17 110 564 77 467 3.67e-18 88.6
Msa0060350 AT1G20510.3 29.096 354 165 15 229 564 162 447 1.23e-17 86.7
Msa0060350 AT1G51680.1 23.971 559 318 23 120 649 77 557 3.54e-16 82.8
Msa0060350 AT5G16370.1 29.235 366 159 14 251 593 186 474 5.84e-16 82.0
Msa0060350 AT1G51680.3 27.692 390 192 19 207 579 162 478 7.20e-16 81.6
Msa0060350 AT1G51680.2 27.692 390 192 19 207 579 162 478 1.10e-15 80.9
Msa0060350 AT4G05160.1 28.800 250 135 12 422 645 309 541 2.11e-15 80.1
Msa0060350 AT5G16340.1 28.732 355 175 13 251 593 186 474 1.28e-14 77.8
Msa0060350 AT1G75960.1 34.197 193 96 7 418 593 296 474 4.79e-13 72.8
Msa0060350 AT3G48990.1 32.099 162 96 5 421 579 281 431 6.86e-13 72.0
Msa0060350 AT1G21540.1 33.540 161 91 5 444 593 322 477 7.57e-13 72.0
Msa0060350 AT1G20480.1 34.177 158 93 6 425 579 333 482 2.87e-12 70.5
Msa0060350 AT1G77240.1 43.956 91 46 2 503 593 390 475 4.90e-12 69.7
Msa0060350 AT3G21230.1 26.337 243 157 8 422 650 331 565 1.33e-11 68.2
Msa0060350 AT3G21240.1 26.908 249 147 11 422 649 316 550 1.35e-11 68.2
Msa0060350 AT1G21530.2 40.659 91 49 2 503 593 389 474 2.69e-11 67.0
Msa0060350 AT1G21530.1 40.659 91 49 2 503 593 387 472 2.75e-11 67.0

Find 199 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTGGTGCTCCCCTTTC+TGG 0.104706 1_2:+18026057 Msa0060350:CDS
TCATAGGCTAACTAGTTATT+TGG 0.187437 1_2:+18029562 Msa0060350:exon
TCTTCCTTGCTCATTTATTA+AGG 0.207102 1_2:+18027035 Msa0060350:CDS
GGGGCTTGGAGAAGGCTCTC+TGG 0.212062 1_2:+18025974 Msa0060350:CDS
TGAGTGGTTCCTTGCTCTTC+AGG 0.218360 1_2:+18022849 Msa0060350:CDS
TGTTCCCAAACTTGAGAAAA+AGG 0.223387 1_2:+18025076 Msa0060350:CDS
CTGGAACTCCACGGCGTTTA+GGG 0.224728 1_2:-18022483 None:intergenic
TTCTGCTTCAGGGTTGTTTC+AGG 0.236650 1_2:+18024083 Msa0060350:intron
TGTGTTGATGCCAACTTTAT+TGG 0.245256 1_2:+18025377 Msa0060350:CDS
AATCAAGGAATTCCTTATTC+AGG 0.263628 1_2:+18028772 Msa0060350:CDS
TGATCGTCCGCGGAGTTTAC+TGG 0.266065 1_2:-18022502 None:intergenic
AAATTCATGCATCAAATAAC+AGG 0.274932 1_2:+18029650 Msa0060350:three_prime_UTR
ACTGGAACTCCACGGCGTTT+AGG 0.295027 1_2:-18022484 None:intergenic
AGGAGGTTGAAAGCAGTTAA+TGG 0.295468 1_2:+18025934 Msa0060350:CDS
GAAGAAGTTACTCAGAAAAT+TGG 0.300791 1_2:-18022360 None:intergenic
ATGGAAGCTGGTTTGGAGCC+TGG 0.309896 1_2:+18025953 Msa0060350:CDS
AGAAATCATTGATCGTAAAA+AGG 0.325053 1_2:+18028065 Msa0060350:CDS
CTGGTTTGGAGCCTGGGGCT+TGG 0.328472 1_2:+18025960 Msa0060350:CDS
AGACCATATCCTTGACCTAT+TGG 0.336719 1_2:-18026943 None:intergenic
TACTCAGAAAATTGGTGTTT+TGG 0.339274 1_2:-18022352 None:intergenic
TGGAAGCTGGTTTGGAGCCT+GGG 0.345795 1_2:+18025954 Msa0060350:CDS
GCAGTTAATGGAAGCTGGTT+TGG 0.349164 1_2:+18025946 Msa0060350:CDS
TGCTAGTGGTTTGGCTGTGT+TGG 0.354855 1_2:+18022780 Msa0060350:CDS
GGGCTTGGAGAAGGCTCTCT+GGG 0.360923 1_2:+18025975 Msa0060350:CDS
TGGAGCCTGGGGCTTGGAGA+AGG 0.364492 1_2:+18025966 Msa0060350:CDS
TTAGTTAAATATCCACCTTC+AGG 0.376720 1_2:-18027555 None:intergenic
ATGGAAAGGATGAGAGGGTT+GGG 0.386145 1_2:+18022806 Msa0060350:CDS
GTTGGGATACCTATAGGATA+TGG 0.388445 1_2:+18025291 Msa0060350:CDS
CCTCGTGGAGAAATTGTAAT+TGG 0.388867 1_2:+18027591 Msa0060350:CDS
TGTAACGATGTATGCATCAT+TGG 0.392960 1_2:+18024120 Msa0060350:CDS
ATAACTTCAGAAGATCTTCC+TGG 0.394589 1_2:-18029534 None:intergenic
TCTGAAGTTATACGCTTCAT+AGG 0.395208 1_2:+18029546 Msa0060350:CDS
TGCGGCTAGGTTGATGAAAA+AGG 0.395377 1_2:+18027988 Msa0060350:intron
GATCCATGGACACCTGAGTC+TGG 0.398942 1_2:+18029460 Msa0060350:CDS
CTCAGTCCACATTGGAAGAA+TGG 0.398978 1_2:+18028743 Msa0060350:CDS
GGAAGCAAAGAAAGCTCGTT+TGG 0.403415 1_2:+18029399 Msa0060350:intron
TAGGGTGGTTAGTGCGGAAC+AGG 0.411432 1_2:-18022465 None:intergenic
TTAAATTGCTTTCTGATCCA+TGG 0.411441 1_2:+18029446 Msa0060350:CDS
CAAGTGCCACACAGTAACTA+TGG 0.413049 1_2:-18028711 None:intergenic
GCATGGAGAGTATGTTTCCT+TGG 0.413823 1_2:+18028104 Msa0060350:CDS
CTGCTGAGTATCACCAGAAA+GGG 0.422987 1_2:-18026070 None:intergenic
GCTAGTGGTTTGGCTGTGTT+GGG 0.423572 1_2:+18022781 Msa0060350:CDS
AAGATAAAGAAAGGAACAAA+GGG 0.428594 1_2:+18025345 Msa0060350:CDS
TCAGTCCACATTGGAAGAAT+GGG 0.429822 1_2:+18028744 Msa0060350:CDS
AGTGGTTGTTTCGAAGGAAA+TGG 0.431521 1_2:+18022657 Msa0060350:CDS
CGCATCCGTTTCATACTGTC+TGG 0.432950 1_2:+18026039 Msa0060350:CDS
TGTGAGATTTGCTAGTGGTT+TGG 0.437204 1_2:+18022771 Msa0060350:CDS
TATTTGGATGTATCTATTGA+GGG 0.440782 1_2:+18029578 Msa0060350:three_prime_UTR
ATGATAACTGCAACATCAGC+TGG 0.443496 1_2:-18024515 None:intergenic
ATACCTCAGCTGCTAGTTCA+AGG 0.446682 1_2:-18025133 None:intergenic
GGCCGTCAGAAAGACTTTCC+AGG 0.457546 1_2:+18029516 Msa0060350:CDS
ATTTGCTTCGCCGGTGGAGA+CGG 0.459944 1_2:+18022552 Msa0060350:CDS
AAAGGAGATCCATATCCTAT+AGG 0.461389 1_2:-18025300 None:intergenic
CATGGAAAGGATGAGAGGGT+TGG 0.461442 1_2:+18022805 Msa0060350:CDS
TTATTTGGATGTATCTATTG+AGG 0.465505 1_2:+18029577 Msa0060350:three_prime_UTR
CATGGAGAGTATGTTTCCTT+GGG 0.466180 1_2:+18028105 Msa0060350:CDS
TGCTTTCAACCTCCTCTCAT+AGG 0.467574 1_2:-18025926 None:intergenic
CCTCATCTGTTGGACACGGC+TGG 0.471706 1_2:+18024423 Msa0060350:CDS
GCAGCAGTTGGGATACCTAT+AGG 0.472722 1_2:+18025285 Msa0060350:CDS
ATGTATACAAGTGGAAGTAC+TGG 0.474903 1_2:+18024536 Msa0060350:CDS
CAGTTCATCAATATCTGTCT+TGG 0.475583 1_2:+18026090 Msa0060350:CDS
AGAGGTAAATCAGCATCAAC+AGG 0.476714 1_2:-18024491 None:intergenic
CCATCTGATGCCTCATCTGT+TGG 0.477457 1_2:+18024413 Msa0060350:CDS
ACAATTTCTCCACGAGGCAT+TGG 0.478544 1_2:-18027585 None:intergenic
AAGTAACCAAGAGTGACATT+TGG 0.478964 1_2:-18027618 None:intergenic
TGAAAGCAGTTAATGGAAGC+TGG 0.480204 1_2:+18025941 Msa0060350:CDS
GAAGAATGGGCTTCAAATCA+AGG 0.482234 1_2:+18028757 Msa0060350:CDS
AACAGGAGAGTTGCGAGGAT+GGG 0.487307 1_2:-18022448 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 1_2:+18025273 Msa0060350:intron
CCAATGTAGGTGAATGCAAC+GGG 0.492645 1_2:+18025874 Msa0060350:intron
TTGAATTGGGTGAGTATGAA+TGG 0.493545 1_2:+18022719 Msa0060350:CDS
AAAACACTTGTAAATATTAG+CGG 0.496596 1_2:+18024344 Msa0060350:CDS
GAACAGGAGAGTTGCGAGGA+TGG 0.496821 1_2:-18022449 None:intergenic
GGTGGTCCAAATGTCACTCT+TGG 0.500524 1_2:+18027612 Msa0060350:CDS
TGGTTCTACACTGGTGACAT+AGG 0.500937 1_2:+18028018 Msa0060350:CDS
CCGGTGGAGACGGCGTGGGA+AGG 0.502155 1_2:+18022562 Msa0060350:CDS
TTTATGTCACTCATTGAATG+AGG 0.503431 1_2:+18024153 Msa0060350:CDS
GTAACGATGTATGCATCATT+GGG 0.503568 1_2:+18024121 Msa0060350:CDS
TTACTGTGTGGCACTTGTTG+TGG 0.503677 1_2:+18028717 Msa0060350:CDS
GAGTATGATGGTGACAATGT+AGG 0.503858 1_2:-18022425 None:intergenic
TTAATAAATGAGCAAGGAAG+AGG 0.507013 1_2:-18027033 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 1_2:-18025318 None:intergenic
GTCATTTCCAGTGCTCCAAT+AGG 0.507815 1_2:+18026928 Msa0060350:intron
ATGGAGAAGAGTGGTGGTGA+TGG 0.510454 1_2:+18022676 Msa0060350:CDS
GCTCCAATAGGTCAAGGATA+TGG 0.512887 1_2:+18026940 Msa0060350:CDS
AGTATGATGGTGACAATGTA+GGG 0.514432 1_2:-18022424 None:intergenic
AGTTCATCAATATCTGTCTT+GGG 0.515096 1_2:+18026091 Msa0060350:CDS
TTTGCAGATGTTAAGCGACT+TGG 0.516699 1_2:+18024458 Msa0060350:CDS
ACAGGAGAGTTGCGAGGATG+GGG 0.517085 1_2:-18022447 None:intergenic
GAGAGCCTTCTCCAAGCCCC+AGG 0.517765 1_2:-18025971 None:intergenic
GGCTGTGTTGGGACATGGAA+AGG 0.517980 1_2:+18022792 Msa0060350:CDS
CAAGATAAAGAAAGGAACAA+AGG 0.518432 1_2:+18025344 Msa0060350:CDS
ATTCTTGACCGTGTTCGCGA+TGG 0.519390 1_2:+18025414 Msa0060350:CDS
AACAAGAGTGGTTGTTTCGA+AGG 0.522687 1_2:+18022651 Msa0060350:CDS
CGAACACGGTCAAGAATTGC+TGG 0.522952 1_2:-18025408 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 1_2:+18025274 Msa0060350:intron
CTTTAATTAATCATCTGTGA+TGG 0.528944 1_2:-18029707 None:intergenic
GAGAAGAGTGGTGGTGATGG+TGG 0.532291 1_2:+18022679 Msa0060350:CDS
AAGCCAGACTCAGGTGTCCA+TGG 0.533358 1_2:-18029463 None:intergenic
ACATCAAGCAAGATAAAGAA+AGG 0.535370 1_2:+18025336 Msa0060350:CDS
GGTTTGGCTGTGTTGGGACA+TGG 0.539640 1_2:+18022787 Msa0060350:CDS
CCAACAGATGAGGCATCAGA+TGG 0.541242 1_2:-18024413 None:intergenic
GGCGTTTAGGGTGGTTAGTG+CGG 0.543038 1_2:-18022471 None:intergenic
GTAAACTCCGCGGACGATCA+AGG 0.545035 1_2:+18022505 Msa0060350:CDS
CGTGGAGAAATTGTAATTGG+TGG 0.547343 1_2:+18027594 Msa0060350:CDS
ATAGGGAGGTTTCATCAAGA+TGG 0.548115 1_2:+18028036 Msa0060350:CDS
CTTCGCCGGTGGAGACGGCG+TGG 0.549519 1_2:+18022557 Msa0060350:CDS
TTGCTGATACTAGGGTTGAG+TGG 0.550542 1_2:+18022833 Msa0060350:CDS
GATACATCTGTTGGCCGTGT+TGG 0.550940 1_2:+18027006 Msa0060350:CDS
AGAGTATGTTTCCTTGGGAA+AGG 0.550970 1_2:+18028110 Msa0060350:CDS
GCATACGGAGAGATTACTGT+TGG 0.551893 1_2:+18022627 Msa0060350:CDS
AATTGTTTGAAGAAGCATGC+AGG 0.551968 1_2:+18022602 Msa0060350:CDS
GGTACAGCAGCCAATAAAGT+TGG 0.552940 1_2:-18025387 None:intergenic
CCACACAGTAACTATGGAAA+GGG 0.553679 1_2:-18028705 None:intergenic
GGTGCATGCATCACTAGTAA+AGG 0.555060 1_2:+18028834 Msa0060350:CDS
AGGTCACGACAGTAATTTGT+GGG 0.556939 1_2:+18024309 Msa0060350:CDS
TGAACACTCCATCGCGAACA+CGG 0.558463 1_2:-18025422 None:intergenic
GGAAGCTGGTTTGGAGCCTG+GGG 0.562959 1_2:+18025955 Msa0060350:CDS
CACCACCAGACAGTATGAAA+CGG 0.564677 1_2:-18026044 None:intergenic
GGTTCTACACTGGTGACATA+GGG 0.565337 1_2:+18028019 Msa0060350:CDS
ACTGCTGAGTATCACCAGAA+AGG 0.570535 1_2:-18026071 None:intergenic
CTTGCTTGATGTATCTGTGA+GGG 0.571405 1_2:-18025325 None:intergenic
CCTTCCCACGCCGTCTCCAC+CGG 0.573161 1_2:-18022562 None:intergenic
TGCGAGGATGGGGAGTATGA+TGG 0.575752 1_2:-18022437 None:intergenic
CAGAAGATTTGCTTCGCCGG+TGG 0.575937 1_2:+18022546 Msa0060350:CDS
TGGAAGTACTGGATTACCTA+AGG 0.576756 1_2:+18024547 Msa0060350:CDS
TTCCTGGAAAGTCTTTCTGA+CGG 0.577666 1_2:-18029518 None:intergenic
AGTTCAAGGATATGAGCCAT+TGG 0.579034 1_2:-18025119 None:intergenic
GCAGTGACTAAGCCAGACTC+AGG 0.581299 1_2:-18029472 None:intergenic
AGAAGCATGCAGGAAGCATA+CGG 0.584187 1_2:+18022612 Msa0060350:CDS
TAGCTAATCGACTGGCCTGA+AGG 0.584227 1_2:+18027540 Msa0060350:intron
GCAGTTATCATGTATACAAG+TGG 0.584330 1_2:+18024527 Msa0060350:CDS
TCCAGTGCTCCAATAGGTCA+AGG 0.584850 1_2:+18026934 Msa0060350:intron
TTTACCTTAATAAATGAGCA+AGG 0.585073 1_2:-18027039 None:intergenic
TGTGGCTTCTCAGTCCACAT+TGG 0.586175 1_2:+18028735 Msa0060350:CDS
GGGACATGGAAAGGATGAGA+GGG 0.587034 1_2:+18022801 Msa0060350:CDS
CAACATTATATTGTCCACAT+AGG 0.588682 1_2:-18028674 None:intergenic
ATTACTGTTGGGAACAAGAG+TGG 0.589151 1_2:+18022639 Msa0060350:CDS
GATGTATGCATCATTGGGAG+AGG 0.590579 1_2:+18024126 Msa0060350:CDS
AATTCATGCATCAAATAACA+GGG 0.591013 1_2:+18029651 Msa0060350:three_prime_UTR
GCCAATGTAGGTGAATGCAA+CGG 0.592102 1_2:+18025873 Msa0060350:intron
GAACAGAAGATTTGCTTCGC+CGG 0.592463 1_2:+18022543 Msa0060350:CDS
GCCACACAGTAACTATGGAA+AGG 0.592809 1_2:-18028706 None:intergenic
AAAATCCGAGCAATTCTTGG+TGG 0.592932 1_2:+18026015 Msa0060350:CDS
ACTGCAACATCAGCTGGGAG+AGG 0.595197 1_2:-18024509 None:intergenic
TCGAAGGAAATGGAGAAGAG+TGG 0.595299 1_2:+18022667 Msa0060350:CDS
CTAATCGACTGGCCTGAAGG+TGG 0.598093 1_2:+18027543 Msa0060350:CDS
TGGGACATGGAAAGGATGAG+AGG 0.600615 1_2:+18022800 Msa0060350:CDS
TTAGTATCATACCTTTCCCA+AGG 0.600980 1_2:-18028121 None:intergenic
TTTATTTAGCCTATGAGAGG+AGG 0.601307 1_2:+18025917 Msa0060350:CDS
GGTCTTACAGAGACTTGTGC+TGG 0.601412 1_2:+18026961 Msa0060350:CDS
AAGTCGCTTAACATCTGCAA+AGG 0.603112 1_2:-18024456 None:intergenic
CCCTTTCCATAGTTACTGTG+TGG 0.606415 1_2:+18028705 Msa0060350:CDS
TGCGACCACCAAGAATTGCT+CGG 0.608998 1_2:-18026020 None:intergenic
TGCTCTCAAGCTCAAGAGAG+AGG 0.609631 1_2:+18029495 Msa0060350:CDS
GGAAGGAGTGAGTACATTGG+CGG 0.610244 1_2:+18022579 Msa0060350:CDS
TATCCTTGAACTAGCAGCTG+AGG 0.611422 1_2:+18025130 Msa0060350:CDS
ATATCTAGCATACTTGCCAA+TGG 0.611559 1_2:+18025103 Msa0060350:CDS
TTCGCCGGTGGAGACGGCGT+GGG 0.611781 1_2:+18022558 Msa0060350:CDS
GGAATGAGATGGTTCTACAC+TGG 0.616046 1_2:+18028009 Msa0060350:CDS
TCTTATTGTCAGCTCCTATG+TGG 0.616504 1_2:+18028660 Msa0060350:CDS
GACATTGTTAAACTGCAGCA+TGG 0.618080 1_2:+18028087 Msa0060350:CDS
CTCTAAAGAAGAAAGCATCA+AGG 0.618470 1_2:+18028810 Msa0060350:CDS
TCTACACTGGTGACATAGGG+AGG 0.620080 1_2:+18028022 Msa0060350:CDS
ATAAATGAGCAAGGAAGAGG+AGG 0.620903 1_2:-18027030 None:intergenic
GAGGTCACGACAGTAATTTG+TGG 0.621092 1_2:+18024308 Msa0060350:CDS
CTTACAGAGACTTGTGCTGG+TGG 0.623479 1_2:+18026964 Msa0060350:CDS
TGATAACTGCAACATCAGCT+GGG 0.625199 1_2:-18024514 None:intergenic
AAGGAAATGGAGAAGAGTGG+TGG 0.626690 1_2:+18022670 Msa0060350:CDS
ATCCGTTTCATACTGTCTGG+TGG 0.626955 1_2:+18026042 Msa0060350:CDS
CATACGGAGAGATTACTGTT+GGG 0.628004 1_2:+18022628 Msa0060350:CDS
CAACAGATGAGGCATCAGAT+GGG 0.637208 1_2:-18024412 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 1_2:-18025326 None:intergenic
CACACCACCTTGATCGTCCG+CGG 0.642013 1_2:-18022512 None:intergenic
AATGACTCGCCAATGCCTCG+TGG 0.642641 1_2:+18027576 Msa0060350:CDS
TGAAGCCCATTCTTCCAATG+TGG 0.643581 1_2:-18028749 None:intergenic
GAACTCCACGGCGTTTAGGG+TGG 0.647316 1_2:-18022480 None:intergenic
CCAGCCGTGTCCAACAGATG+AGG 0.653025 1_2:-18024423 None:intergenic
GGTGTTGTGAGATTTGCTAG+TGG 0.658642 1_2:+18022766 Msa0060350:CDS
AGTGAAACGTGTGATATGCA+TGG 0.659671 1_2:+18024379 Msa0060350:CDS
GATGCCTCATCTGTTGGACA+CGG 0.661876 1_2:+18024419 Msa0060350:CDS
CGGAGTTTACTGGAACTCCA+CGG 0.663555 1_2:-18022492 None:intergenic
AATTACGAACCTGAAGAGCA+AGG 0.664494 1_2:-18022858 None:intergenic
TCGCGATGGAGTGTTCAAGA+AGG 0.664511 1_2:+18025428 Msa0060350:CDS
ATCAAGGTGGTGTGACAGTG+CGG 0.668330 1_2:+18022521 Msa0060350:CDS
AAAGACAAAAGAATCATACA+AGG 0.668435 1_2:+18027653 Msa0060350:CDS
AAGGAAGAGGAGGTCCAACA+CGG 0.670202 1_2:-18027020 None:intergenic
TGCTGAGTATCACCAGAAAG+GGG 0.679172 1_2:-18026069 None:intergenic
CCAATTACAATTTCTCCACG+AGG 0.687033 1_2:-18027591 None:intergenic
ATTCATGCATCAAATAACAG+GGG 0.687599 1_2:+18029652 Msa0060350:three_prime_UTR
TGCGGAACAGGAGAGTTGCG+AGG 0.692879 1_2:-18022453 None:intergenic
ATGTAGGTGAATGCAACGGG+AGG 0.694846 1_2:+18025877 Msa0060350:intron
GTGGGAAGGAGTGAGTACAT+TGG 0.695328 1_2:+18022576 Msa0060350:CDS
GATAAAGAAAGGAACAAAGG+GGG 0.697638 1_2:+18025347 Msa0060350:CDS
AGATAAAGAAAGGAACAAAG+GGG 0.697836 1_2:+18025346 Msa0060350:CDS
TAAAGAAGAAAGCATCAAGG+AGG 0.735856 1_2:+18028813 Msa0060350:CDS
ACTAACCACCCTAAACGCCG+TGG 0.744248 1_2:+18022475 Msa0060350:CDS
AACTCCGCGGACGATCAAGG+TGG 0.767764 1_2:+18022508 Msa0060350:CDS
TGGAGTTCCAGTAAACTCCG+CGG 0.773211 1_2:+18022495 Msa0060350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATGTTTAGATTTA+CGG + chr1_2:18027781-18027800 Msa0060350:intron 10.0%
!!! ATATATTGTTATTATTTTCT+TGG + chr1_2:18027965-18027984 Msa0060350:intron 10.0%
!! AAACAATAATACTATAAAAC+AGG + chr1_2:18023713-18023732 Msa0060350:intron 15.0%
!! AAATAATAATCTATCTACAT+TGG + chr1_2:18023978-18023997 Msa0060350:intron 15.0%
!! ACTAAAATTTGTATATTGAT+AGG - chr1_2:18026122-18026141 None:intergenic 15.0%
!!! AAATTTTAGTATTTTTCGAT+TGG + chr1_2:18026132-18026151 Msa0060350:intron 15.0%
!! GATTATTGAAAAAAAAAATG+AGG + chr1_2:18026167-18026186 Msa0060350:intron 15.0%
!!! ATAATATTTTCCTTTACAAA+AGG - chr1_2:18026811-18026830 None:intergenic 15.0%
!!! TTATGTATATTTTTACTTTG+AGG + chr1_2:18027086-18027105 Msa0060350:intron 15.0%
!! ATAAAGAAAGATAATCAATT+AGG - chr1_2:18027482-18027501 None:intergenic 15.0%
!! AATTATCCTATATAAGATAA+TGG - chr1_2:18027512-18027531 None:intergenic 15.0%
!!! TCTCTTAAATTTAAAATCAT+TGG + chr1_2:18028257-18028276 Msa0060350:intron 15.0%
!!! TGATTATTTTTTATAATGGA+TGG - chr1_2:18028293-18028312 None:intergenic 15.0%
!!! AGAGTGATTATTTTTTATAA+TGG - chr1_2:18028297-18028316 None:intergenic 15.0%
!! ACATATAAAAAAATTATCCT+AGG + chr1_2:18029019-18029038 Msa0060350:intron 15.0%
!! TTCTGTTTGGTTAAAAATAA+CGG + chr1_2:18022933-18022952 Msa0060350:intron 20.0%
!! CTTATTAAATTTGTAGTGTT+TGG + chr1_2:18023005-18023024 Msa0060350:intron 20.0%
!!! TTTTTTTGAATTAAGAGTGT+AGG + chr1_2:18023097-18023116 Msa0060350:intron 20.0%
!!! TTTTTTGAATTAAGAGTGTA+GGG + chr1_2:18023098-18023117 Msa0060350:intron 20.0%
!! TGAATTAAATTTGTAGTGTT+TGG + chr1_2:18023388-18023407 Msa0060350:intron 20.0%
!!! TGAAATTTTTTCTTCTCAAT+TGG - chr1_2:18023632-18023651 None:intergenic 20.0%
!!! TTTTATAATATAAGACCAAG+AGG + chr1_2:18023759-18023778 Msa0060350:intron 20.0%
!!! TTAAATCATTTCAAGTAGTA+AGG - chr1_2:18023924-18023943 None:intergenic 20.0%
!! TTATTTATGATAAGTGTAAC+AGG - chr1_2:18023964-18023983 None:intergenic 20.0%
!!! TTATTTGTCTCTTCAATTTT+GGG - chr1_2:18024021-18024040 None:intergenic 20.0%
!!! ATTATTTGTCTCTTCAATTT+TGG - chr1_2:18024022-18024041 None:intergenic 20.0%
!! AAAACACTTGTAAATATTAG+CGG + chr1_2:18024344-18024363 Msa0060350:CDS 20.0%
!! ATCAATTCAATCAATTTAGA+TGG + chr1_2:18024693-18024712 Msa0060350:intron 20.0%
!! TTTCAGTATTAGAAATTGTA+GGG - chr1_2:18024921-18024940 None:intergenic 20.0%
!! ATTTCAGTATTAGAAATTGT+AGG - chr1_2:18024922-18024941 None:intergenic 20.0%
!! TACAATTTCTAATACTGAAA+TGG + chr1_2:18024921-18024940 Msa0060350:intron 20.0%
!!! AAATTTTACCATACAAGAAA+AGG - chr1_2:18024985-18025004 None:intergenic 20.0%
!!! TTTTGTTCTTTGATATTGTA+AGG + chr1_2:18025559-18025578 Msa0060350:intron 20.0%
!! TTTGTTCTTTGATATTGTAA+GGG + chr1_2:18025560-18025579 Msa0060350:intron 20.0%
!!! TTTGTCATTTTGTAGATTTA+TGG + chr1_2:18025788-18025807 Msa0060350:intron 20.0%
!!! TTGTCATTTTGTAGATTTAT+GGG + chr1_2:18025789-18025808 Msa0060350:intron 20.0%
!!! GCTAAATAAAACAACTTTTT+TGG - chr1_2:18025907-18025926 None:intergenic 20.0%
!!! CTTTAATCTTGATTTCTTTT+AGG - chr1_2:18026220-18026239 None:intergenic 20.0%
!!! AGACTAAGAAATATAAGTTT+TGG + chr1_2:18026522-18026541 Msa0060350:intron 20.0%
!! CTAAATAACATTTACAAATG+TGG - chr1_2:18026741-18026760 None:intergenic 20.0%
!!! TTTTCTAAAGAGAAAAGAAA+CGG - chr1_2:18027682-18027701 None:intergenic 20.0%
!!! TTCTCTTTAGAAAAAAAGAT+AGG + chr1_2:18027688-18027707 Msa0060350:intron 20.0%
!!! ATTCTGTCATTTCATAAATT+TGG - chr1_2:18028235-18028254 None:intergenic 20.0%
!! GAAGAATTCAAATCAATAAA+TGG + chr1_2:18028334-18028353 Msa0060350:intron 20.0%
!! CAAAAAACAAGTGAATTATT+TGG - chr1_2:18029135-18029154 None:intergenic 20.0%
!!! CAAATAATTCACTTGTTTTT+TGG + chr1_2:18029133-18029152 Msa0060350:intron 20.0%
!! TTCATCATTGCAATAATTAA+GGG - chr1_2:18029349-18029368 None:intergenic 20.0%
!! ATTCATCATTGCAATAATTA+AGG - chr1_2:18029350-18029369 None:intergenic 20.0%
!!! GAAAGCAATTTAATTTTTGT+TGG - chr1_2:18029439-18029458 None:intergenic 20.0%
!!! AGTTTTTGAGAAAGTTGAAT+TGG + chr1_2:18022705-18022724 Msa0060350:CDS 25.0%
!!! GTTTTTGAGAAAGTTGAATT+GGG + chr1_2:18022706-18022725 Msa0060350:CDS 25.0%
!!! TGGTTAAAAATAACGGATAA+TGG + chr1_2:18022940-18022959 Msa0060350:intron 25.0%
!!! TTTTTGAATTAAGAGTGTAG+GGG + chr1_2:18023099-18023118 Msa0060350:intron 25.0%
!! CTTATCTGTTGACTAATATA+AGG - chr1_2:18023346-18023365 None:intergenic 25.0%
! AGCTTAATGCATAAACATTT+CGG - chr1_2:18024202-18024221 None:intergenic 25.0%
!! TCCAAAAATAGTTTTTGTAC+TGG + chr1_2:18024597-18024616 Msa0060350:intron 25.0%
!! TCCAGTACAAAAACTATTTT+TGG - chr1_2:18024601-18024620 None:intergenic 25.0%
! CAGTCCTCAAATTTATAAAA+CGG - chr1_2:18024887-18024906 None:intergenic 25.0%
!! TGGTGATTACTTCTATATTT+TGG + chr1_2:18024941-18024960 Msa0060350:intron 25.0%
! GAAAAGGATAAATAGAAGAA+CGG - chr1_2:18024969-18024988 None:intergenic 25.0%
!! CTATTTATCCTTTTCTTGTA+TGG + chr1_2:18024974-18024993 Msa0060350:intron 25.0%
!! AAAATTTCTTTCTTTTGCAC+AGG + chr1_2:18024998-18025017 Msa0060350:intron 25.0%
!! AAATTTCTTTCTTTTGCACA+GGG + chr1_2:18024999-18025018 Msa0060350:intron 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG + chr1_2:18025263-18025282 Msa0060350:intron 25.0%
! AAGATAAAGAAAGGAACAAA+GGG + chr1_2:18025345-18025364 Msa0060350:CDS 25.0%
! TAGTGATTTACTTGTTTGAA+GGG - chr1_2:18025539-18025558 None:intergenic 25.0%
! ATAGTGATTTACTTGTTTGA+AGG - chr1_2:18025540-18025559 None:intergenic 25.0%
!! GAGTTGATTGAATTAATTGA+CGG - chr1_2:18025604-18025623 None:intergenic 25.0%
!! AGTTTCTGGAAATTTGTTTA+GGG - chr1_2:18025664-18025683 None:intergenic 25.0%
!! AAGTTTCTGGAAATTTGTTT+AGG - chr1_2:18025665-18025684 None:intergenic 25.0%
! GCAACATTTAGAAGATTAAA+TGG + chr1_2:18025832-18025851 Msa0060350:intron 25.0%
!! TAATCTTGATTTCTTTTAGG+AGG - chr1_2:18026217-18026236 None:intergenic 25.0%
!!! GTTTTTTTTATCAGTACCTA+TGG - chr1_2:18026336-18026355 None:intergenic 25.0%
!! TTACTTAGGAGTACAATTAT+TGG + chr1_2:18026394-18026413 Msa0060350:intron 25.0%
! TTTACCTTAATAAATGAGCA+AGG - chr1_2:18027042-18027061 None:intergenic 25.0%
!! AACTGAAGTGTTATAATAGT+TGG + chr1_2:18027170-18027189 Msa0060350:intron 25.0%
! GAATTGAAAGTTATAAGAGT+TGG + chr1_2:18027199-18027218 Msa0060350:intron 25.0%
!! AATATTTAAGCATTTGCTAG+AGG - chr1_2:18027306-18027325 None:intergenic 25.0%
! TCTTATGATGTAGATAATTG+TGG - chr1_2:18027330-18027349 None:intergenic 25.0%
! TTGATTGCAGTATATTGAAT+TGG + chr1_2:18027441-18027460 Msa0060350:intron 25.0%
! AGAAAGATAATCAATTAGGA+AGG - chr1_2:18027478-18027497 None:intergenic 25.0%
! AAAGACAAAAGAATCATACA+AGG + chr1_2:18027653-18027672 Msa0060350:CDS 25.0%
!! TCTTTAGAAAAAAAGATAGG+CGG + chr1_2:18027691-18027710 Msa0060350:intron 25.0%
!! TATCAGTAATGCTACTATTT+TGG + chr1_2:18027720-18027739 Msa0060350:intron 25.0%
! ACACAACTTTCAAATTTACA+TGG - chr1_2:18027926-18027945 None:intergenic 25.0%
!!! TTGTTATTATTTTCTTGGTG+CGG + chr1_2:18027970-18027989 Msa0060350:intron 25.0%
!! TTTTACGATCAATGATTTCT+AGG - chr1_2:18028065-18028084 None:intergenic 25.0%
! AGAAATCATTGATCGTAAAA+AGG + chr1_2:18028065-18028084 Msa0060350:CDS 25.0%
! ACTTGAAAAACAATTGTGAA+TGG - chr1_2:18028162-18028181 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG + chr1_2:18028489-18028508 Msa0060350:intron 25.0%
!!! ATATTTTGCTGTTGATTTAG+CGG - chr1_2:18028943-18028962 None:intergenic 25.0%
!!! GAATGCATATTTTGAACTTA+CGG + chr1_2:18029260-18029279 Msa0060350:intron 25.0%
! GTAGTTTATGAAATATTTGC+AGG + chr1_2:18029378-18029397 Msa0060350:intron 25.0%
! TTATTTGGATGTATCTATTG+AGG + chr1_2:18029577-18029596 Msa0060350:three_prime_UTR 25.0%
! TATTTGGATGTATCTATTGA+GGG + chr1_2:18029578-18029597 Msa0060350:three_prime_UTR 25.0%
! AAATTCATGCATCAAATAAC+AGG + chr1_2:18029650-18029669 Msa0060350:three_prime_UTR 25.0%
! AATTCATGCATCAAATAACA+GGG + chr1_2:18029651-18029670 Msa0060350:three_prime_UTR 25.0%
! CTTTAATTAATCATCTGTGA+TGG - chr1_2:18029710-18029729 None:intergenic 25.0%
!! TACTCAGAAAATTGGTGTTT+TGG - chr1_2:18022355-18022374 None:intergenic 30.0%
GAAGAAGTTACTCAGAAAAT+TGG - chr1_2:18022363-18022382 None:intergenic 30.0%
GAATAAACTTAGCTTCTGTT+TGG + chr1_2:18022920-18022939 Msa0060350:intron 30.0%
GTAGTGTTTGGTTAGATTAA+CGG + chr1_2:18023400-18023419 Msa0060350:intron 30.0%
CACGTAGATATGAAAATGAT+AGG + chr1_2:18023847-18023866 Msa0060350:intron 30.0%
! TTAGTTGGTATGCAATGTTA+GGG - chr1_2:18023899-18023918 None:intergenic 30.0%
! TTTAGTTGGTATGCAATGTT+AGG - chr1_2:18023900-18023919 None:intergenic 30.0%
TCAAGTAGTAAGGATTTAGT+TGG - chr1_2:18023914-18023933 None:intergenic 30.0%
! ATACTTAAGTTTTCTGCTTC+AGG + chr1_2:18024072-18024091 Msa0060350:intron 30.0%
! TACTTAAGTTTTCTGCTTCA+GGG + chr1_2:18024073-18024092 Msa0060350:intron 30.0%
TTTATGTCACTCATTGAATG+AGG + chr1_2:18024153-18024172 Msa0060350:CDS 30.0%
GTTTATGCATTAAGCTGTTA+TGG + chr1_2:18024206-18024225 Msa0060350:intron 30.0%
ATTGACGATCTTCAATTTCA+AGG - chr1_2:18024654-18024673 None:intergenic 30.0%
!!! CATGCCGTTTTATAAATTTG+AGG + chr1_2:18024880-18024899 Msa0060350:intron 30.0%
! ACATCCTTTTTCTCAAGTTT+GGG - chr1_2:18025083-18025102 None:intergenic 30.0%
! TACATCCTTTTTCTCAAGTT+TGG - chr1_2:18025084-18025103 None:intergenic 30.0%
AAACACAAGAAAATGGAAAC+AGG - chr1_2:18025225-18025244 None:intergenic 30.0%
CACACAAAAACACAAGAAAA+TGG - chr1_2:18025232-18025251 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG - chr1_2:18025259-18025278 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG + chr1_2:18025336-18025355 Msa0060350:CDS 30.0%
CAAGATAAAGAAAGGAACAA+AGG + chr1_2:18025344-18025363 Msa0060350:CDS 30.0%
AGATAAAGAAAGGAACAAAG+GGG + chr1_2:18025346-18025365 Msa0060350:CDS 30.0%
!!! TGTTTTATTTAGCCTATGAG+AGG + chr1_2:18025914-18025933 Msa0060350:CDS 30.0%
AAAAAAATCCGAGCAATTCT+TGG + chr1_2:18026012-18026031 Msa0060350:CDS 30.0%
AGTTCATCAATATCTGTCTT+GGG + chr1_2:18026091-18026110 Msa0060350:CDS 30.0%
TTAAAAACACAAGCTAGACT+AGG + chr1_2:18026241-18026260 Msa0060350:intron 30.0%
! TTTTTATCAGTACCTATGGT+TGG - chr1_2:18026332-18026351 None:intergenic 30.0%
! TAATAGCCTGTCATTTACTT+AGG + chr1_2:18026380-18026399 Msa0060350:intron 30.0%
TCGGCATAACAGAATAAAAT+AGG - chr1_2:18026469-18026488 None:intergenic 30.0%
AAATCTGTTGAGTGCTAAAT+GGG + chr1_2:18026551-18026570 Msa0060350:intron 30.0%
!! TTAGCTGTATAAAAGTGTTC+TGG - chr1_2:18026618-18026637 None:intergenic 30.0%
!! GCTATTGAAGTTTGTTAGTT+TGG - chr1_2:18026670-18026689 None:intergenic 30.0%
GTTATTTAGCGTAAATGACA+AGG + chr1_2:18026752-18026771 Msa0060350:intron 30.0%
ACAACTTTATCATTGCACTA+TGG + chr1_2:18026777-18026796 Msa0060350:intron 30.0%
!! GATTTTGATGATACATCTGT+TGG + chr1_2:18026997-18027016 Msa0060350:CDS 30.0%
TTAATAAATGAGCAAGGAAG+AGG - chr1_2:18027036-18027055 None:intergenic 30.0%
TCTTCCTTGCTCATTTATTA+AGG + chr1_2:18027035-18027054 Msa0060350:CDS 30.0%
! TGAAGTGTTATAATAGTTGG+TGG + chr1_2:18027173-18027192 Msa0060350:intron 30.0%
!! AAAAAGGTTCCTCTAAAATG+AGG - chr1_2:18027262-18027281 None:intergenic 30.0%
TCTACATCATAAGATGTGAT+AGG + chr1_2:18027336-18027355 Msa0060350:intron 30.0%
! ATCCTATATAAGATAATGGC+AGG - chr1_2:18027508-18027527 None:intergenic 30.0%
TTAGTTAAATATCCACCTTC+AGG - chr1_2:18027558-18027577 None:intergenic 30.0%
! CTTTAGAAAAAAAGATAGGC+GGG + chr1_2:18027692-18027711 Msa0060350:intron 30.0%
!! AGTAATGCTACTATTTTGGA+TGG + chr1_2:18027724-18027743 Msa0060350:intron 30.0%
AACATATATTAAACCTGTCG+TGG - chr1_2:18027773-18027792 None:intergenic 30.0%
TGAGTTTGACAAAATCATTG+TGG - chr1_2:18027884-18027903 None:intergenic 30.0%
TTGATGAAAAAGGAATGAGA+TGG + chr1_2:18027998-18028017 Msa0060350:CDS 30.0%
GTAAGAATCTGATCATTTAG+TGG + chr1_2:18028208-18028227 Msa0060350:intron 30.0%
TTCTTCTACTGATGATAGTT+TGG - chr1_2:18028320-18028339 None:intergenic 30.0%
ACAAATGATGGTTTATGAAC+TGG + chr1_2:18028501-18028520 Msa0060350:intron 30.0%
! TTGTATTTTTCATCTGCAAC+TGG + chr1_2:18028612-18028631 Msa0060350:intron 30.0%
! GCAACTGGTTTATTAAATAC+AGG + chr1_2:18028627-18028646 Msa0060350:intron 30.0%
GGTTTATTAAATACAGGTTG+AGG + chr1_2:18028633-18028652 Msa0060350:intron 30.0%
CAACATTATATTGTCCACAT+AGG - chr1_2:18028677-18028696 None:intergenic 30.0%
AATCAAGGAATTCCTTATTC+AGG + chr1_2:18028772-18028791 Msa0060350:CDS 30.0%
!! AGTTCTGAAAAACCTGAATA+AGG - chr1_2:18028787-18028806 None:intergenic 30.0%
GCTAAATCAACAGCAAAATA+TGG + chr1_2:18028942-18028961 Msa0060350:intron 30.0%
!!! GAGCAAATTTTTTACGCTTT+GGG + chr1_2:18028964-18028983 Msa0060350:intron 30.0%
ATGGTATAAACCGTTATAGA+TGG + chr1_2:18029097-18029116 Msa0060350:intron 30.0%
TCAACTTAAGCCATCTATAA+CGG - chr1_2:18029110-18029129 None:intergenic 30.0%
GTACAATGTATGTTAGTAGT+AGG - chr1_2:18029194-18029213 None:intergenic 30.0%
TTAAATTGCTTTCTGATCCA+TGG + chr1_2:18029446-18029465 Msa0060350:CDS 30.0%
TCATAGGCTAACTAGTTATT+TGG + chr1_2:18029562-18029581 Msa0060350:exon 30.0%
AAATGAAGAGAAAAACACTC+AGG + chr1_2:18029619-18029638 Msa0060350:three_prime_UTR 30.0%
ATTCATGCATCAAATAACAG+GGG + chr1_2:18029652-18029671 Msa0060350:three_prime_UTR 30.0%
! AGTATGATGGTGACAATGTA+GGG - chr1_2:18022427-18022446 None:intergenic 35.0%
! AATTGTTTGAAGAAGCATGC+AGG + chr1_2:18022602-18022621 Msa0060350:CDS 35.0%
TTGAATTGGGTGAGTATGAA+TGG + chr1_2:18022719-18022738 Msa0060350:CDS 35.0%
! TCGTATGATGAAGCTTTTGA+TGG + chr1_2:18022745-18022764 Msa0060350:CDS 35.0%
! TTGGGATTTTTGCTGATACT+AGG + chr1_2:18022824-18022843 Msa0060350:CDS 35.0%
! TGGGATTTTTGCTGATACTA+GGG + chr1_2:18022825-18022844 Msa0060350:CDS 35.0%
ATCAGAAATTCGCTAAGAAG+TGG - chr1_2:18022885-18022904 None:intergenic 35.0%
GTTACCAATAATACTGCACA+CGG + chr1_2:18023585-18023604 Msa0060350:intron 35.0%
! TAAGACCAAGAGGATACTTT+TGG + chr1_2:18023769-18023788 Msa0060350:intron 35.0%
TACGTGTGAAATTTGATTGC+AGG - chr1_2:18023833-18023852 None:intergenic 35.0%
TGTAACGATGTATGCATCAT+TGG + chr1_2:18024120-18024139 Msa0060350:CDS 35.0%
GTAACGATGTATGCATCATT+GGG + chr1_2:18024121-18024140 Msa0060350:CDS 35.0%
TAAACATTTCGGTGAGACAA+AGG - chr1_2:18024191-18024210 None:intergenic 35.0%
GCAGTTATCATGTATACAAG+TGG + chr1_2:18024527-18024546 Msa0060350:CDS 35.0%
! ATGTATACAAGTGGAAGTAC+TGG + chr1_2:18024536-18024555 Msa0060350:CDS 35.0%
TGATTGAATTGATCGACAGA+TGG - chr1_2:18024686-18024705 None:intergenic 35.0%
TGTTCCCAAACTTGAGAAAA+AGG + chr1_2:18025076-18025095 Msa0060350:CDS 35.0%
ATATCTAGCATACTTGCCAA+TGG + chr1_2:18025103-18025122 Msa0060350:CDS 35.0%
AAAGGAGATCCATATCCTAT+AGG - chr1_2:18025303-18025322 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG + chr1_2:18025347-18025366 Msa0060350:CDS 35.0%
! TGTGTTGATGCCAACTTTAT+TGG + chr1_2:18025377-18025396 Msa0060350:CDS 35.0%
ACACATGAAGCATATGAGAT+AGG - chr1_2:18025487-18025506 None:intergenic 35.0%
TACTTGTTTGAAGGGAAGTT+TGG - chr1_2:18025531-18025550 None:intergenic 35.0%
TCAATCAACTCTGATGAATC+TGG + chr1_2:18025613-18025632 Msa0060350:intron 35.0%
TTTATTTAGCCTATGAGAGG+AGG + chr1_2:18025917-18025936 Msa0060350:CDS 35.0%
CAGTTCATCAATATCTGTCT+TGG + chr1_2:18026090-18026109 Msa0060350:CDS 35.0%
TGTACTCCTAAGTAAATGAC+AGG - chr1_2:18026389-18026408 None:intergenic 35.0%
AGTCTGATTCATTCTTAAGC+TGG - chr1_2:18026507-18026526 None:intergenic 35.0%
GAAATCTGTTGAGTGCTAAA+TGG + chr1_2:18026550-18026569 Msa0060350:intron 35.0%
CAAATGTGGAATTGCAATGT+GGG - chr1_2:18026727-18026746 None:intergenic 35.0%
ACAAATGTGGAATTGCAATG+TGG - chr1_2:18026728-18026747 None:intergenic 35.0%
!! GGCTTTTTCTCCTTTTGTAA+AGG + chr1_2:18026798-18026817 Msa0060350:intron 35.0%
!!! ATCTAGCTCTTTTAAAGCAG+AGG + chr1_2:18027130-18027149 Msa0060350:intron 35.0%
! TTCACAACTCCTCATTTTAG+AGG + chr1_2:18027250-18027269 Msa0060350:intron 35.0%
AGCCTGCCATTATCTTATAT+AGG + chr1_2:18027503-18027522 Msa0060350:intron 35.0%
!! TGTTTTGTTAGCTAATCGAC+TGG + chr1_2:18027532-18027551 Msa0060350:intron 35.0%
AAGTAACCAAGAGTGACATT+TGG - chr1_2:18027621-18027640 None:intergenic 35.0%
TAGATTTACGGTGAGTTTAG+TGG + chr1_2:18027793-18027812 Msa0060350:intron 35.0%
AGATTTACGGTGAGTTTAGT+GGG + chr1_2:18027794-18027813 Msa0060350:intron 35.0%
TTAGTATCATACCTTTCCCA+AGG - chr1_2:18028124-18028143 None:intergenic 35.0%
!! CTCTAAAGAAGAAAGCATCA+AGG + chr1_2:18028810-18028829 Msa0060350:CDS 35.0%
!! TAAAGAAGAAAGCATCAAGG+AGG + chr1_2:18028813-18028832 Msa0060350:CDS 35.0%
GTTAGAGGATTGTGATATGA+AGG - chr1_2:18028864-18028883 None:intergenic 35.0%
ACAATCCTCTAACTACATAG+TGG + chr1_2:18028871-18028890 Msa0060350:intron 35.0%
CATTACCACTATGTAGTTAG+AGG - chr1_2:18028879-18028898 None:intergenic 35.0%
!!! GGAGCAAATTTTTTACGCTT+TGG + chr1_2:18028963-18028982 Msa0060350:intron 35.0%
TGCTCTTATTCAAACAACCT+AGG - chr1_2:18029039-18029058 None:intergenic 35.0%
CTTCAAAGTTCAAGCTAAGA+TGG + chr1_2:18029078-18029097 Msa0060350:intron 35.0%
GATCCATCATGGATTCTTAA+GGG - chr1_2:18029172-18029191 None:intergenic 35.0%
GACTCTCTAAATACTGTCTT+TGG + chr1_2:18029282-18029301 Msa0060350:intron 35.0%
ATAACTTCAGAAGATCTTCC+TGG - chr1_2:18029537-18029556 None:intergenic 35.0%
! TCTGAAGTTATACGCTTCAT+AGG + chr1_2:18029546-18029565 Msa0060350:CDS 35.0%
! GAGTATGATGGTGACAATGT+AGG - chr1_2:18022428-18022447 None:intergenic 40.0%
CATACGGAGAGATTACTGTT+GGG + chr1_2:18022628-18022647 Msa0060350:CDS 40.0%
ATTACTGTTGGGAACAAGAG+TGG + chr1_2:18022639-18022658 Msa0060350:CDS 40.0%
! AACAAGAGTGGTTGTTTCGA+AGG + chr1_2:18022651-18022670 Msa0060350:CDS 40.0%
! AGTGGTTGTTTCGAAGGAAA+TGG + chr1_2:18022657-18022676 Msa0060350:CDS 40.0%
!! TGTGAGATTTGCTAGTGGTT+TGG + chr1_2:18022771-18022790 Msa0060350:CDS 40.0%
AATTACGAACCTGAAGAGCA+AGG - chr1_2:18022861-18022880 None:intergenic 40.0%
TTGTCCGTGTGCAGTATTAT+TGG - chr1_2:18023592-18023611 None:intergenic 40.0%
!! GCATACCAAAAGTATCCTCT+TGG - chr1_2:18023777-18023796 None:intergenic 40.0%
! TGTCTCTTCAATTTTGGGCT+GGG - chr1_2:18024016-18024035 None:intergenic 40.0%
! TTGTCTCTTCAATTTTGGGC+TGG - chr1_2:18024017-18024036 None:intergenic 40.0%
TCGGTGAGACAAAGGAAAAA+TGG - chr1_2:18024183-18024202 None:intergenic 40.0%
AATTCTGTTGTTGCAGACAG+AGG + chr1_2:18024289-18024308 Msa0060350:intron 40.0%
! AGGTCACGACAGTAATTTGT+GGG + chr1_2:18024309-18024328 Msa0060350:CDS 40.0%
AGTGAAACGTGTGATATGCA+TGG + chr1_2:18024379-18024398 Msa0060350:CDS 40.0%
AAGTCGCTTAACATCTGCAA+AGG - chr1_2:18024459-18024478 None:intergenic 40.0%
TTTGCAGATGTTAAGCGACT+TGG + chr1_2:18024458-18024477 Msa0060350:CDS 40.0%
AGAGGTAAATCAGCATCAAC+AGG - chr1_2:18024494-18024513 None:intergenic 40.0%
TGATAACTGCAACATCAGCT+GGG - chr1_2:18024517-18024536 None:intergenic 40.0%
ATGATAACTGCAACATCAGC+TGG - chr1_2:18024518-18024537 None:intergenic 40.0%
!! TGGAAGTACTGGATTACCTA+AGG + chr1_2:18024547-18024566 Msa0060350:CDS 40.0%
! AGTACTGGATTACCTAAGGT+TGG + chr1_2:18024551-18024570 Msa0060350:intron 40.0%
GTGAAAGGAAATCCAACCTT+AGG - chr1_2:18024566-18024585 None:intergenic 40.0%
TGGACTGTCAATCTAGTGAA+AGG - chr1_2:18024581-18024600 None:intergenic 40.0%
AGTTCAAGGATATGAGCCAT+TGG - chr1_2:18025122-18025141 None:intergenic 40.0%
! TAGAATTTGATGGCAGCAGT+TGG + chr1_2:18025273-18025292 Msa0060350:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG + chr1_2:18025274-18025293 Msa0060350:intron 40.0%
GTTGGGATACCTATAGGATA+TGG + chr1_2:18025291-18025310 Msa0060350:CDS 40.0%
CTTGCTTGATGTATCTGTGA+GGG - chr1_2:18025328-18025347 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG - chr1_2:18025329-18025348 None:intergenic 40.0%
CATGAAGCATATGAGATAGG+TGG - chr1_2:18025484-18025503 None:intergenic 40.0%
CATATGCTTCATGTGTGTGT+TGG + chr1_2:18025491-18025510 Msa0060350:intron 40.0%
! GCTCATTTGAAGCAAGTTTC+TGG - chr1_2:18025678-18025697 None:intergenic 40.0%
ACTTGCTTCATTGCCAATGT+AGG + chr1_2:18025861-18025880 Msa0060350:intron 40.0%
AGGAGGTTGAAAGCAGTTAA+TGG + chr1_2:18025934-18025953 Msa0060350:CDS 40.0%
TGAAAGCAGTTAATGGAAGC+TGG + chr1_2:18025941-18025960 Msa0060350:CDS 40.0%
AAAATCCGAGCAATTCTTGG+TGG + chr1_2:18026015-18026034 Msa0060350:CDS 40.0%
! TTATGCCGATTGAGCATTAG+AGG + chr1_2:18026480-18026499 Msa0060350:intron 40.0%
! TGTTGAGTGCTAAATGGGTT+TGG + chr1_2:18026556-18026575 Msa0060350:intron 40.0%
!!! CATCCTTTGAGCTAGCTTTT+GGG - chr1_2:18026589-18026608 None:intergenic 40.0%
!!! TCATCCTTTGAGCTAGCTTT+TGG - chr1_2:18026590-18026609 None:intergenic 40.0%
AAAAGCTAGCTCAAAGGATG+AGG + chr1_2:18026589-18026608 Msa0060350:intron 40.0%
! CTTTTATACAGCTAACAGCC+CGG + chr1_2:18026623-18026642 Msa0060350:intron 40.0%
! TTTTATACAGCTAACAGCCC+GGG + chr1_2:18026624-18026643 Msa0060350:intron 40.0%
AGACCATATCCTTGACCTAT+TGG - chr1_2:18026946-18026965 None:intergenic 40.0%
ATAAATGAGCAAGGAAGAGG+AGG - chr1_2:18027033-18027052 None:intergenic 40.0%
CCAATTACAATTTCTCCACG+AGG - chr1_2:18027594-18027613 None:intergenic 40.0%
CCTCGTGGAGAAATTGTAAT+TGG + chr1_2:18027591-18027610 Msa0060350:CDS 40.0%
CGTGGAGAAATTGTAATTGG+TGG + chr1_2:18027594-18027613 Msa0060350:CDS 40.0%
!! ATTATTTTCTTGGTGCGGCT+AGG + chr1_2:18027975-18027994 Msa0060350:intron 40.0%
ATAGGGAGGTTTCATCAAGA+TGG + chr1_2:18028036-18028055 Msa0060350:CDS 40.0%
GACATTGTTAAACTGCAGCA+TGG + chr1_2:18028087-18028106 Msa0060350:CDS 40.0%
! CATGGAGAGTATGTTTCCTT+GGG + chr1_2:18028105-18028124 Msa0060350:CDS 40.0%
AGAGTATGTTTCCTTGGGAA+AGG + chr1_2:18028110-18028129 Msa0060350:CDS 40.0%
TCTTATTGTCAGCTCCTATG+TGG + chr1_2:18028660-18028679 Msa0060350:CDS 40.0%
CCACACAGTAACTATGGAAA+GGG - chr1_2:18028708-18028727 None:intergenic 40.0%
TCAGTCCACATTGGAAGAAT+GGG + chr1_2:18028744-18028763 Msa0060350:CDS 40.0%
! GAAGAATGGGCTTCAAATCA+AGG + chr1_2:18028757-18028776 Msa0060350:CDS 40.0%
CATCATGGATTCTTAAGGGT+AGG - chr1_2:18029168-18029187 None:intergenic 40.0%
CTACCCTTAAGAATCCATGA+TGG + chr1_2:18029166-18029185 Msa0060350:intron 40.0%
GGATCCATCATGGATTCTTA+AGG - chr1_2:18029173-18029192 None:intergenic 40.0%
GTTAGTAGTAGGATCCATCA+TGG - chr1_2:18029183-18029202 None:intergenic 40.0%
TAAGGGAACAAACAGATTGC+AGG - chr1_2:18029332-18029351 None:intergenic 40.0%
TTCCTGGAAAGTCTTTCTGA+CGG - chr1_2:18029521-18029540 None:intergenic 40.0%
! GAACAGAAGATTTGCTTCGC+CGG + chr1_2:18022543-18022562 Msa0060350:CDS 45.0%
! AGAAGCATGCAGGAAGCATA+CGG + chr1_2:18022612-18022631 Msa0060350:CDS 45.0%
GCATACGGAGAGATTACTGT+TGG + chr1_2:18022627-18022646 Msa0060350:CDS 45.0%
TCGAAGGAAATGGAGAAGAG+TGG + chr1_2:18022667-18022686 Msa0060350:CDS 45.0%
AAGGAAATGGAGAAGAGTGG+TGG + chr1_2:18022670-18022689 Msa0060350:CDS 45.0%
!! GGTGTTGTGAGATTTGCTAG+TGG + chr1_2:18022766-18022785 Msa0060350:CDS 45.0%
ATGGAAAGGATGAGAGGGTT+GGG + chr1_2:18022806-18022825 Msa0060350:CDS 45.0%
TTGCTGATACTAGGGTTGAG+TGG + chr1_2:18022833-18022852 Msa0060350:CDS 45.0%
! TTCTGCTTCAGGGTTGTTTC+AGG + chr1_2:18024083-18024102 Msa0060350:intron 45.0%
GATGTATGCATCATTGGGAG+AGG + chr1_2:18024126-18024145 Msa0060350:CDS 45.0%
GAGGTCACGACAGTAATTTG+TGG + chr1_2:18024308-18024327 Msa0060350:CDS 45.0%
! CAACAGATGAGGCATCAGAT+GGG - chr1_2:18024415-18024434 None:intergenic 45.0%
TATCCTTGAACTAGCAGCTG+AGG + chr1_2:18025130-18025149 Msa0060350:CDS 45.0%
ATACCTCAGCTGCTAGTTCA+AGG - chr1_2:18025136-18025155 None:intergenic 45.0%
ACTAGCAGCTGAGGTATGTA+AGG + chr1_2:18025139-18025158 Msa0060350:intron 45.0%
CTAGCAGCTGAGGTATGTAA+GGG + chr1_2:18025140-18025159 Msa0060350:intron 45.0%
TAGCAGCTGAGGTATGTAAG+GGG + chr1_2:18025141-18025160 Msa0060350:intron 45.0%
GATGTATCTGTGAGGGTCAA+AGG - chr1_2:18025321-18025340 None:intergenic 45.0%
GGTACAGCAGCCAATAAAGT+TGG - chr1_2:18025390-18025409 None:intergenic 45.0%
GAAGCATATGAGATAGGTGG+AGG - chr1_2:18025481-18025500 None:intergenic 45.0%
AAGGGAAGTTTGGATGCAAC+TGG - chr1_2:18025521-18025540 None:intergenic 45.0%
GCCAATGTAGGTGAATGCAA+CGG + chr1_2:18025873-18025892 Msa0060350:intron 45.0%
CCAATGTAGGTGAATGCAAC+GGG + chr1_2:18025874-18025893 Msa0060350:intron 45.0%
TGCTTTCAACCTCCTCTCAT+AGG - chr1_2:18025929-18025948 None:intergenic 45.0%
GCAGTTAATGGAAGCTGGTT+TGG + chr1_2:18025946-18025965 Msa0060350:CDS 45.0%
ATCCGTTTCATACTGTCTGG+TGG + chr1_2:18026042-18026061 Msa0060350:CDS 45.0%
CACCACCAGACAGTATGAAA+CGG - chr1_2:18026047-18026066 None:intergenic 45.0%
TGCTGAGTATCACCAGAAAG+GGG - chr1_2:18026072-18026091 None:intergenic 45.0%
CTGCTGAGTATCACCAGAAA+GGG - chr1_2:18026073-18026092 None:intergenic 45.0%
ACTGCTGAGTATCACCAGAA+AGG - chr1_2:18026074-18026093 None:intergenic 45.0%
CGTGATTTCTCTCCAACCAT+AGG + chr1_2:18026317-18026336 Msa0060350:intron 45.0%
CTGGTCCTCTAATGCTCAAT+CGG - chr1_2:18026488-18026507 None:intergenic 45.0%
CATCCCAAAAGCTAGCTCAA+AGG + chr1_2:18026583-18026602 Msa0060350:intron 45.0%
! TTTGGAGTCCCACATTGCTA+AGG - chr1_2:18026652-18026671 None:intergenic 45.0%
GCAATGTGGGAATTGAACTC+AGG - chr1_2:18026714-18026733 None:intergenic 45.0%
GTCATTTCCAGTGCTCCAAT+AGG + chr1_2:18026928-18026947 Msa0060350:intron 45.0%
GCTCCAATAGGTCAAGGATA+TGG + chr1_2:18026940-18026959 Msa0060350:CDS 45.0%
ACAATTTCTCCACGAGGCAT+TGG - chr1_2:18027588-18027607 None:intergenic 45.0%
GAACTATATCTGTCCACGAC+AGG + chr1_2:18027757-18027776 Msa0060350:intron 45.0%
!! TGCGGCTAGGTTGATGAAAA+AGG + chr1_2:18027988-18028007 Msa0060350:intron 45.0%
! GGAATGAGATGGTTCTACAC+TGG + chr1_2:18028009-18028028 Msa0060350:CDS 45.0%
! TGGTTCTACACTGGTGACAT+AGG + chr1_2:18028018-18028037 Msa0060350:CDS 45.0%
GGTTCTACACTGGTGACATA+GGG + chr1_2:18028019-18028038 Msa0060350:CDS 45.0%
! GCATGGAGAGTATGTTTCCT+TGG + chr1_2:18028104-18028123 Msa0060350:CDS 45.0%
CCCTTTCCATAGTTACTGTG+TGG + chr1_2:18028705-18028724 Msa0060350:CDS 45.0%
GCCACACAGTAACTATGGAA+AGG - chr1_2:18028709-18028728 None:intergenic 45.0%
CAAGTGCCACACAGTAACTA+TGG - chr1_2:18028714-18028733 None:intergenic 45.0%
! TTACTGTGTGGCACTTGTTG+TGG + chr1_2:18028717-18028736 Msa0060350:CDS 45.0%
CTCAGTCCACATTGGAAGAA+TGG + chr1_2:18028743-18028762 Msa0060350:CDS 45.0%
TGAAGCCCATTCTTCCAATG+TGG - chr1_2:18028752-18028771 None:intergenic 45.0%
GGTGCATGCATCACTAGTAA+AGG + chr1_2:18028834-18028853 Msa0060350:CDS 45.0%
GGAAGCAAAGAAAGCTCGTT+TGG + chr1_2:18029399-18029418 Msa0060350:intron 45.0%
AACAGGAGAGTTGCGAGGAT+GGG - chr1_2:18022451-18022470 None:intergenic 50.0%
CGGAGTTTACTGGAACTCCA+CGG - chr1_2:18022495-18022514 None:intergenic 50.0%
TGGAGTTCCAGTAAACTCCG+CGG + chr1_2:18022495-18022514 Msa0060350:CDS 50.0%
ATCAAGGTGGTGTGACAGTG+CGG + chr1_2:18022521-18022540 Msa0060350:CDS 50.0%
GTGGGAAGGAGTGAGTACAT+TGG + chr1_2:18022576-18022595 Msa0060350:CDS 50.0%
GGAAGGAGTGAGTACATTGG+CGG + chr1_2:18022579-18022598 Msa0060350:CDS 50.0%
! ATGGAGAAGAGTGGTGGTGA+TGG + chr1_2:18022676-18022695 Msa0060350:CDS 50.0%
! TGCTAGTGGTTTGGCTGTGT+TGG + chr1_2:18022780-18022799 Msa0060350:CDS 50.0%
! GCTAGTGGTTTGGCTGTGTT+GGG + chr1_2:18022781-18022800 Msa0060350:CDS 50.0%
TGGGACATGGAAAGGATGAG+AGG + chr1_2:18022800-18022819 Msa0060350:CDS 50.0%
GGGACATGGAAAGGATGAGA+GGG + chr1_2:18022801-18022820 Msa0060350:CDS 50.0%
CATGGAAAGGATGAGAGGGT+TGG + chr1_2:18022805-18022824 Msa0060350:CDS 50.0%
TGAGTGGTTCCTTGCTCTTC+AGG + chr1_2:18022849-18022868 Msa0060350:CDS 50.0%
! CCAACAGATGAGGCATCAGA+TGG - chr1_2:18024416-18024435 None:intergenic 50.0%
CCATCTGATGCCTCATCTGT+TGG + chr1_2:18024413-18024432 Msa0060350:CDS 50.0%
GATGCCTCATCTGTTGGACA+CGG + chr1_2:18024419-18024438 Msa0060350:CDS 50.0%
GCAGCAGTTGGGATACCTAT+AGG + chr1_2:18025285-18025304 Msa0060350:CDS 50.0%
CGAACACGGTCAAGAATTGC+TGG - chr1_2:18025411-18025430 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG + chr1_2:18025414-18025433 Msa0060350:CDS 50.0%
TGAACACTCCATCGCGAACA+CGG - chr1_2:18025425-18025444 None:intergenic 50.0%
! TCGCGATGGAGTGTTCAAGA+AGG + chr1_2:18025428-18025447 Msa0060350:CDS 50.0%
CCCGTTGCATTCACCTACAT+TGG - chr1_2:18025877-18025896 None:intergenic 50.0%
ATGTAGGTGAATGCAACGGG+AGG + chr1_2:18025877-18025896 Msa0060350:intron 50.0%
TGCGACCACCAAGAATTGCT+CGG - chr1_2:18026023-18026042 None:intergenic 50.0%
CGCATCCGTTTCATACTGTC+TGG + chr1_2:18026039-18026058 Msa0060350:CDS 50.0%
ACTGTACGCGCAGATATGTC+AGG + chr1_2:18026354-18026373 Msa0060350:intron 50.0%
TCCCACATTGCTAAGGTTCC+CGG - chr1_2:18026645-18026664 None:intergenic 50.0%
TCCAGTGCTCCAATAGGTCA+AGG + chr1_2:18026934-18026953 Msa0060350:intron 50.0%
TCCTTGACCTATTGGAGCAC+TGG - chr1_2:18026938-18026957 None:intergenic 50.0%
GGTCTTACAGAGACTTGTGC+TGG + chr1_2:18026961-18026980 Msa0060350:CDS 50.0%
CTTACAGAGACTTGTGCTGG+TGG + chr1_2:18026964-18026983 Msa0060350:CDS 50.0%
GATACATCTGTTGGCCGTGT+TGG + chr1_2:18027006-18027025 Msa0060350:CDS 50.0%
AAGGAAGAGGAGGTCCAACA+CGG - chr1_2:18027023-18027042 None:intergenic 50.0%
!! TAGCTAATCGACTGGCCTGA+AGG + chr1_2:18027540-18027559 Msa0060350:intron 50.0%
GGTGGTCCAAATGTCACTCT+TGG + chr1_2:18027612-18027631 Msa0060350:CDS 50.0%
TCTACACTGGTGACATAGGG+AGG + chr1_2:18028022-18028041 Msa0060350:CDS 50.0%
TGTGGCTTCTCAGTCCACAT+TGG + chr1_2:18028735-18028754 Msa0060350:CDS 50.0%
TCGCCCACGTCAATCTTCAA+CGG + chr1_2:18029224-18029243 Msa0060350:intron 50.0%
CCACCGTTGAAGATTGACGT+GGG - chr1_2:18029230-18029249 None:intergenic 50.0%
TCCACCGTTGAAGATTGACG+TGG - chr1_2:18029231-18029250 None:intergenic 50.0%
TGCTCTCAAGCTCAAGAGAG+AGG + chr1_2:18029495-18029514 Msa0060350:CDS 50.0%
! TGCGAGGATGGGGAGTATGA+TGG - chr1_2:18022440-18022459 None:intergenic 55.0%
ACAGGAGAGTTGCGAGGATG+GGG - chr1_2:18022450-18022469 None:intergenic 55.0%
GAACAGGAGAGTTGCGAGGA+TGG - chr1_2:18022452-18022471 None:intergenic 55.0%
TAGGGTGGTTAGTGCGGAAC+AGG - chr1_2:18022468-18022487 None:intergenic 55.0%
! GGCGTTTAGGGTGGTTAGTG+CGG - chr1_2:18022474-18022493 None:intergenic 55.0%
ACTAACCACCCTAAACGCCG+TGG + chr1_2:18022475-18022494 Msa0060350:CDS 55.0%
CTGGAACTCCACGGCGTTTA+GGG - chr1_2:18022486-18022505 None:intergenic 55.0%
ACTGGAACTCCACGGCGTTT+AGG - chr1_2:18022487-18022506 None:intergenic 55.0%
TGATCGTCCGCGGAGTTTAC+TGG - chr1_2:18022505-18022524 None:intergenic 55.0%
GTAAACTCCGCGGACGATCA+AGG + chr1_2:18022505-18022524 Msa0060350:CDS 55.0%
! CAGAAGATTTGCTTCGCCGG+TGG + chr1_2:18022546-18022565 Msa0060350:CDS 55.0%
ATTTGCTTCGCCGGTGGAGA+CGG + chr1_2:18022552-18022571 Msa0060350:CDS 55.0%
!! GAGAAGAGTGGTGGTGATGG+TGG + chr1_2:18022679-18022698 Msa0060350:CDS 55.0%
GGTTTGGCTGTGTTGGGACA+TGG + chr1_2:18022787-18022806 Msa0060350:CDS 55.0%
GGCTGTGTTGGGACATGGAA+AGG + chr1_2:18022792-18022811 Msa0060350:CDS 55.0%
ACTGCAACATCAGCTGGGAG+AGG - chr1_2:18024512-18024531 None:intergenic 55.0%
!! ATGGAAGCTGGTTTGGAGCC+TGG + chr1_2:18025953-18025972 Msa0060350:CDS 55.0%
!! TGGAAGCTGGTTTGGAGCCT+GGG + chr1_2:18025954-18025973 Msa0060350:CDS 55.0%
CCCACATTGCTAAGGTTCCC+GGG - chr1_2:18026644-18026663 None:intergenic 55.0%
CCCGGGAACCTTAGCAATGT+GGG + chr1_2:18026641-18026660 Msa0060350:intron 55.0%
TCAATAGCCACCCTCACACC+TGG + chr1_2:18026682-18026701 Msa0060350:intron 55.0%
!! CTAATCGACTGGCCTGAAGG+TGG + chr1_2:18027543-18027562 Msa0060350:CDS 55.0%
AATGACTCGCCAATGCCTCG+TGG + chr1_2:18027576-18027595 Msa0060350:CDS 55.0%
CCCACGTCAATCTTCAACGG+TGG + chr1_2:18029227-18029246 Msa0060350:intron 55.0%
GATCCATGGACACCTGAGTC+TGG + chr1_2:18029460-18029479 Msa0060350:CDS 55.0%
AAGCCAGACTCAGGTGTCCA+TGG - chr1_2:18029466-18029485 None:intergenic 55.0%
GCAGTGACTAAGCCAGACTC+AGG - chr1_2:18029475-18029494 None:intergenic 55.0%
GGCCGTCAGAAAGACTTTCC+AGG + chr1_2:18029516-18029535 Msa0060350:CDS 55.0%
TGCGGAACAGGAGAGTTGCG+AGG - chr1_2:18022456-18022475 None:intergenic 60.0%
GAACTCCACGGCGTTTAGGG+TGG - chr1_2:18022483-18022502 None:intergenic 60.0%
AACTCCGCGGACGATCAAGG+TGG + chr1_2:18022508-18022527 Msa0060350:CDS 60.0%
CACACCACCTTGATCGTCCG+CGG - chr1_2:18022515-18022534 None:intergenic 60.0%
CCAGCCGTGTCCAACAGATG+AGG - chr1_2:18024426-18024445 None:intergenic 60.0%
CCTCATCTGTTGGACACGGC+TGG + chr1_2:18024423-18024442 Msa0060350:CDS 60.0%
!! GGAAGCTGGTTTGGAGCCTG+GGG + chr1_2:18025955-18025974 Msa0060350:CDS 60.0%
GGGCTTGGAGAAGGCTCTCT+GGG + chr1_2:18025975-18025994 Msa0060350:CDS 60.0%
! TCTGGTGGTGCTCCCCTTTC+TGG + chr1_2:18026057-18026076 Msa0060350:CDS 60.0%
GCCCGGGAACCTTAGCAATG+TGG + chr1_2:18026640-18026659 Msa0060350:intron 60.0%
ATTGAACTCAGGCCCACGCC+AGG - chr1_2:18026703-18026722 None:intergenic 60.0%
!! CTGGTTTGGAGCCTGGGGCT+TGG + chr1_2:18025960-18025979 Msa0060350:CDS 65.0%
TGGAGCCTGGGGCTTGGAGA+AGG + chr1_2:18025966-18025985 Msa0060350:CDS 65.0%
GAGAGCCTTCTCCAAGCCCC+AGG - chr1_2:18025974-18025993 None:intergenic 65.0%
GGGGCTTGGAGAAGGCTCTC+TGG + chr1_2:18025974-18025993 Msa0060350:CDS 65.0%
TTCGCCGGTGGAGACGGCGT+GGG + chr1_2:18022558-18022577 Msa0060350:CDS 70.0%
CCTTCCCACGCCGTCTCCAC+CGG - chr1_2:18022565-18022584 None:intergenic 70.0%
AGCCACCCTCACACCTGGCG+TGG + chr1_2:18026687-18026706 Msa0060350:intron 70.0%
GCCACCCTCACACCTGGCGT+GGG + chr1_2:18026688-18026707 Msa0060350:intron 70.0%
CAGGCCCACGCCAGGTGTGA+GGG - chr1_2:18026695-18026714 None:intergenic 70.0%
TCAGGCCCACGCCAGGTGTG+AGG - chr1_2:18026696-18026715 None:intergenic 70.0%
CTTCGCCGGTGGAGACGGCG+TGG + chr1_2:18022557-18022576 Msa0060350:CDS 75.0%
CCGGTGGAGACGGCGTGGGA+AGG + chr1_2:18022562-18022581 Msa0060350:CDS 75.0%
GCCCACGCCAGGTGTGAGGG+TGG - chr1_2:18026692-18026711 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18022286 18029760 18022286 ID=Msa0060350;Name=Msa0060350
chr1_2 mRNA 18022286 18029760 18022286 ID=Msa0060350-mRNA-1;Parent=Msa0060350;Name=Msa0060350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|11|193|697
chr1_2 exon 18022286 18022870 18022286 ID=Msa0060350-mRNA-1:exon:7004;Parent=Msa0060350-mRNA-1
chr1_2 exon 18024094 18024174 18024094 ID=Msa0060350-mRNA-1:exon:7005;Parent=Msa0060350-mRNA-1
chr1_2 exon 18024305 18024568 18024305 ID=Msa0060350-mRNA-1:exon:7006;Parent=Msa0060350-mRNA-1
chr1_2 exon 18025020 18025151 18025020 ID=Msa0060350-mRNA-1:exon:7007;Parent=Msa0060350-mRNA-1
chr1_2 exon 18025276 18025449 18025276 ID=Msa0060350-mRNA-1:exon:7008;Parent=Msa0060350-mRNA-1
chr1_2 exon 18025883 18026112 18025883 ID=Msa0060350-mRNA-1:exon:7009;Parent=Msa0060350-mRNA-1
chr1_2 exon 18026939 18027056 18026939 ID=Msa0060350-mRNA-1:exon:7010;Parent=Msa0060350-mRNA-1
chr1_2 exon 18027543 18027674 18027543 ID=Msa0060350-mRNA-1:exon:7011;Parent=Msa0060350-mRNA-1
chr1_2 exon 18027997 18028131 18027997 ID=Msa0060350-mRNA-1:exon:7012;Parent=Msa0060350-mRNA-1
chr1_2 exon 18028649 18028855 18028649 ID=Msa0060350-mRNA-1:exon:7013;Parent=Msa0060350-mRNA-1
chr1_2 exon 18029400 18029760 18029400 ID=Msa0060350-mRNA-1:exon:7014;Parent=Msa0060350-mRNA-1
chr1_2 five_prime_UTR 18022286 18022417 18022286 ID=Msa0060350-mRNA-1:five_prime_utr;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18022418 18022870 18022418 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18024094 18024174 18024094 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18024305 18024568 18024305 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18025020 18025151 18025020 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18025276 18025449 18025276 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18025883 18026112 18025883 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18026939 18027056 18026939 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18027543 18027674 18027543 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18027997 18028131 18027997 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18028649 18028855 18028649 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 CDS 18029400 18029567 18029400 ID=Msa0060350-mRNA-1:cds;Parent=Msa0060350-mRNA-1
chr1_2 three_prime_UTR 18029568 18029760 18029568 ID=Msa0060350-mRNA-1:three_prime_utr;Parent=Msa0060350-mRNA-1
Gene Sequence

>Msa0060350

ATGAATCCCTACATTGTCACCATCATACTCCCCATCCTCGCAACTCTCCTGTTCCGCACTAACCACCCTAAACGCCGTGGAGTTCCAGTAAACTCCGCGGACGATCAAGGTGGTGTGACAGTGCGGAACAGAAGATTTGCTTCGCCGGTGGAGACGGCGTGGGAAGGAGTGAGTACATTGGCGGAATTGTTTGAAGAAGCATGCAGGAAGCATACGGAGAGATTACTGTTGGGAACAAGAGTGGTTGTTTCGAAGGAAATGGAGAAGAGTGGTGGTGATGGTGGAAAAGTTTTTGAGAAAGTTGAATTGGGTGAGTATGAATGGTTATCGTATGATGAAGCTTTTGATGGTGTTGTGAGATTTGCTAGTGGTTTGGCTGTGTTGGGACATGGAAAGGATGAGAGGGTTGGGATTTTTGCTGATACTAGGGTTGAGTGGTTCCTTGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACGATGTATGCATCATTGGGAGAGGAAGCTTTATGTCACTCATTGAATGAGACAGAGGTCACGACAGTAATTTGTGGGCAGAAAGAATTGAAAACACTTGTAAATATTAGCGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGATGATATCCCATCTGATGCCTCATCTGTTGGACACGGCTGGACAATCATATCCTTTGCAGATGTTAAGCGACTTGGTAAAGAAAAGCCTGTTGATGCTGATTTACCTCTCCCAGCTGATGTTGCAGTTATCATGTATACAAGTGGAAGTACTGGATTACCTAAGGGTGTGATGATGACACATGCTAATGTTTTAGCTACGCTCTCTGCTGTGAAGATGATTGTTCCCAAACTTGAGAAAAAGGATGTATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTAGCAGCTGAGAATTTGATGGCAGCAGTTGGGATACCTATAGGATATGGATCTCCTTTGACCCTCACAGATACATCAAGCAAGATAAAGAAAGGAACAAAGGGGGATGCTACTGTGTTGATGCCAACTTTATTGGCTGCTGTACCAGCAATTCTTGACCGTGTTCGCGATGGAGTGTTCAAGAAGGTGAATGCAACGGGAGGATTACCAAAAAAGTTGTTTTATTTAGCCTATGAGAGGAGGTTGAAAGCAGTTAATGGAAGCTGGTTTGGAGCCTGGGGCTTGGAGAAGGCTCTCTGGGATTTTCTTGTGTTTAAAAAAATCCGAGCAATTCTTGGTGGTCGCATCCGTTTCATACTGTCTGGTGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGAACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTTGGACCTCCTCTTCCTTGCTCATTTATTAAGCTAATCGACTGGCCTGAAGGTGGATATTTAACTAATGACTCGCCAATGCCTCGTGGAGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGTTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATCAAGATGGTTGCCTAGAAATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTTTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCTCCTATGTGGACAATATAATGTTGCATGCTGACCCTTTCCATAGTTACTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAATCAAGGAATTCCTTATTCAGGTTTTTCAGAACTTTGCTCTAAAGAAGAAAGCATCAAGGAGGTGCATGCATCACTAGTAAAGGAAGCAAAGAAAGCTCGTTTGGAGAAATTTGAGATTCCAACAAAAATTAAATTGCTTTCTGATCCATGGACACCTGAGTCTGGCTTAGTCACTGCTGCTCTCAAGCTCAAGAGAGAGGCCGTCAGAAAGACTTTCCAGGAAGATCTTCTGAAGTTATACGCTTCATAG
Protein sequence

>Msa0060350

MNPYIVTIILPILATLLFRTNHPKRRGVPVNSADDQGGVTVRNRRFASPVETAWEGVSTLAELFEEACRKHTERLLLGTRVVVSKEMEKSGGDGGKVFEKVELGEYEWLSYDEAFDGVVRFASGLAVLGHGKDERVGIFADTRVEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGQKELKTLVNISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKEKPVDADLPLPADVAVIMYTSGSTGLPKGVMMTHANVLATLSAVKMIVPKLEKKDVYLAYLPMAHILELAAENLMAAVGIPIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVNATGGLPKKLFYLAYERRLKAVNGSWFGAWGLEKALWDFLVFKKIRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHQDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSSYVDNIMLHADPFHSYCVALVVASQSTLEEWASNQGIPYSGFSELCSKEESIKEVHASLVKEAKKARLEKFEIPTKIKLLSDPWTPESGLVTAALKLKREAVRKTFQEDLLKLYAS*