AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222390 MtrunA17_Chr4g0073551 95.333 150 5 1 1 150 1 148 2.65e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222390 AT2G24090.1 56.494 154 51 3 2 150 3 145 1.98e-44 143

Find 48 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 8_1:+86646843 Msa1222390:intron
CAAGATTGAACAAACCATTT+TGG 0.208259 8_1:-86646954 None:intergenic
TTTCACGAGTCACTGATATT+TGG 0.257574 8_1:-86648972 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 8_1:+86648782 Msa1222390:CDS
ATTTAGCATGGTCCTGTCTA+AGG 0.305154 8_1:+86648873 Msa1222390:three_prime_UTR
GAAATTGAGACTCTCCAAAA+TGG 0.323830 8_1:+86646940 Msa1222390:CDS
GGCATCAGCAAAGCGATTTA+GGG 0.327417 8_1:+86646844 Msa1222390:intron
CGATTTAGGGTTACCGGTGC+TGG 0.339311 8_1:+86646857 Msa1222390:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 8_1:-86646683 None:intergenic
CAAATGGTGTAAAAGCATAT+TGG 0.367232 8_1:-86648909 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 8_1:-86649069 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 8_1:+86646851 Msa1222390:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 8_1:-86649040 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 8_1:+86646631 Msa1222390:CDS
AAAATCGTGCGTCGGAGAGC+AGG 0.438969 8_1:+86646881 Msa1222390:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 8_1:-86646615 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 8_1:-86646488 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 8_1:-86646638 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 8_1:-86646637 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 8_1:+86646720 Msa1222390:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 8_1:-86648925 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 8_1:-86648812 None:intergenic
TTAATTGCGTTTCAATCAAG+TGG 0.506120 8_1:-86646371 None:intergenic
AGGATAGGATAGAACCTTGT+GGG 0.517887 8_1:-86646757 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 8_1:-86646412 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 8_1:+86646494 Msa1222390:exon
TCTTAACCAAAACCATTCCA+TGG 0.537305 8_1:+86646677 Msa1222390:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 8_1:-86649062 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 8_1:-86646733 None:intergenic
GACTTCACAAATCCTTAGAC+AGG 0.543426 8_1:-86648885 None:intergenic
CATGGCGTTGGCTTCTGCAA+CGG 0.545322 8_1:+86646506 Msa1222390:exon
AATTGTTATTACATAATACA+AGG 0.547514 8_1:-86649002 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 8_1:-86646694 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 8_1:-86646466 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 8_1:+86649074 Msa1222390:three_prime_UTR
CGAGTAGAGGAAGAAGAAGA+TGG 0.569694 8_1:-86646567 None:intergenic
CCACAAACACACTCTTAACA+TGG 0.593623 8_1:+86646488 Msa1222390:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 8_1:+86648861 Msa1222390:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 8_1:-86646689 None:intergenic
AAGTCTCAAGGCGGCAAAGG+AGG 0.608560 8_1:-86646538 None:intergenic
TGAAAGTCTCAAGGCGGCAA+AGG 0.614182 8_1:-86646541 None:intergenic
GTAGAGGAAGAAGAAGATGG+TGG 0.614461 8_1:-86646564 None:intergenic
AGATGGTGGTGAAAGTCTCA+AGG 0.634963 8_1:-86646550 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 8_1:-86646580 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 8_1:-86646711 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 8_1:+86646743 Msa1222390:CDS
TGGTGGTGAAAGTCTCAAGG+CGG 0.774344 8_1:-86646547 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 8_1:-86646418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG + chr8_1:86648135-86648154 Msa1222390:intron 10.0%
!!! TTAATTGAATTTCATTTTTC+AGG + chr8_1:86646823-86646842 Msa1222390:intron 15.0%
!! AAAATAAAACAACTTTCAAA+TGG - chr8_1:86648928-86648947 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG + chr8_1:86648940-86648959 Msa1222390:three_prime_UTR 15.0%
!!! AATTGTTATTACATAATACA+AGG - chr8_1:86649005-86649024 None:intergenic 15.0%
!!! TAAATCAATTTTTTTCCTTA+TGG + chr8_1:86649097-86649116 Msa1222390:three_prime_UTR 15.0%
!! TTATTATCATCATTCTTCTT+TGG + chr8_1:86647003-86647022 Msa1222390:intron 20.0%
!!! TTTGGTATTTGTTTACTTTT+TGG + chr8_1:86647063-86647082 Msa1222390:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG - chr8_1:86647670-86647689 None:intergenic 20.0%
!! GATATTGTTAATTAGTAAGT+TGG + chr8_1:86647811-86647830 Msa1222390:intron 20.0%
!!! TCATGTTATTTGTTAATAAG+AGG + chr8_1:86647850-86647869 Msa1222390:intron 20.0%
!!! CATGTTATTTGTTAATAAGA+GGG + chr8_1:86647851-86647870 Msa1222390:intron 20.0%
!!! ATGTTATTTGTTAATAAGAG+GGG + chr8_1:86647852-86647871 Msa1222390:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG + chr8_1:86648048-86648067 Msa1222390:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG + chr8_1:86648049-86648068 Msa1222390:intron 20.0%
!! ACGAACAATTAAGTTAATTA+TGG + chr8_1:86648700-86648719 Msa1222390:intron 20.0%
! TACATAGTTAAACTTGAAGT+GGG - chr8_1:86646791-86646810 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG - chr8_1:86646792-86646811 None:intergenic 25.0%
! TCTACAAAAAGAATAAGAAG+AGG + chr8_1:86646918-86646937 Msa1222390:CDS 25.0%
!! AAGTTTTACTACATGAAAGT+GGG + chr8_1:86647287-86647306 Msa1222390:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG - chr8_1:86647483-86647502 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG - chr8_1:86647783-86647802 None:intergenic 25.0%
! TCTATTGAGTGATAAAAACT+TGG - chr8_1:86647790-86647809 None:intergenic 25.0%
!! AAGTTTTTATCACTCAATAG+AGG + chr8_1:86647789-86647808 Msa1222390:intron 25.0%
!! AAAATTTGAAAAGTGCAACT+TGG - chr8_1:86648210-86648229 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG - chr8_1:86648279-86648298 None:intergenic 25.0%
! TGATAAATTACAACCTTCTA+TGG + chr8_1:86648321-86648340 Msa1222390:intron 25.0%
! GAATGATATTTGATATACTG+TGG + chr8_1:86648569-86648588 Msa1222390:intron 25.0%
!!! ATTTTTACCGAACTTTTTCT+TGG + chr8_1:86648648-86648667 Msa1222390:intron 25.0%
!!! TTTTTACCGAACTTTTTCTT+GGG + chr8_1:86648649-86648668 Msa1222390:intron 25.0%
! AAAATTCCCAAGAAAAAGTT+CGG - chr8_1:86648658-86648677 None:intergenic 25.0%
! TTTCTGTTTACTTTCAGATA+CGG - chr8_1:86648815-86648834 None:intergenic 25.0%
! TCTGAATTATGAATTTAGCA+TGG + chr8_1:86648861-86648880 Msa1222390:three_prime_UTR 25.0%
! GTAAATGTGAATAGTAGAAA+TGG - chr8_1:86649043-86649062 None:intergenic 25.0%
! TTTACAACAAAAAGTCCATA+AGG - chr8_1:86649115-86649134 None:intergenic 25.0%
!!! ACTTTTTGTTGTAAATCATG+TGG + chr8_1:86649120-86649139 Msa1222390:three_prime_UTR 25.0%
TTAATTGCGTTTCAATCAAG+TGG - chr8_1:86646374-86646393 None:intergenic 30.0%
GAATTGACATTGTTTGAGAA+AGG - chr8_1:86646618-86646637 None:intergenic 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG - chr8_1:86646675-86646694 None:intergenic 30.0%
TTTCAATTTGTAGCCTTTAG+CGG - chr8_1:86646736-86646755 None:intergenic 30.0%
! CAAGATTGAACAAACCATTT+TGG - chr8_1:86646957-86646976 None:intergenic 30.0%
TCATTGCTTACAACTGTATT+TGG + chr8_1:86647045-86647064 Msa1222390:intron 30.0%
! GAAGTTTTACTACATGAAAG+TGG + chr8_1:86647286-86647305 Msa1222390:intron 30.0%
ACACATGAAAAATAGAGAGA+AGG - chr8_1:86647419-86647438 None:intergenic 30.0%
ATATATCATGTAGCTCAAGT+AGG + chr8_1:86647516-86647535 Msa1222390:intron 30.0%
TCCTATATGAACATGGAAAT+CGG - chr8_1:86647558-86647577 None:intergenic 30.0%
TGATGTCAAAACGGTTTAAA+GGG - chr8_1:86647586-86647605 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG - chr8_1:86647665-86647684 None:intergenic 30.0%
TGAGAGAGAGAAAAAGATTA+AGG - chr8_1:86647720-86647739 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG + chr8_1:86647820-86647839 Msa1222390:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG + chr8_1:86647953-86647972 Msa1222390:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG - chr8_1:86648174-86648193 None:intergenic 30.0%
ATCTTAACAAAATGCCTTGA+TGG + chr8_1:86648177-86648196 Msa1222390:intron 30.0%
TCTTAACAAAATGCCTTGAT+GGG + chr8_1:86648178-86648197 Msa1222390:intron 30.0%
GAGGACTAAAATAAAGTCAT+TGG + chr8_1:86648351-86648370 Msa1222390:intron 30.0%
AGTGACTATGACAATGTAAT+TGG + chr8_1:86648782-86648801 Msa1222390:CDS 30.0%
! CAAATGGTGTAAAAGCATAT+TGG - chr8_1:86648912-86648931 None:intergenic 30.0%
AGACATATGTAATGCTAAAC+AGG - chr8_1:86649072-86649091 None:intergenic 30.0%
TTAGCATTACATATGTCTTG+TGG + chr8_1:86649074-86649093 Msa1222390:three_prime_UTR 30.0%
GATTGAGTAAGATTTCTACG+CGG - chr8_1:86646421-86646440 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG - chr8_1:86646469-86646488 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG + chr8_1:86646631-86646650 Msa1222390:CDS 35.0%
ACTAGACCAATTGAGTTTGA+GGG - chr8_1:86646640-86646659 None:intergenic 35.0%
TACTAGACCAATTGAGTTTG+AGG - chr8_1:86646641-86646660 None:intergenic 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG - chr8_1:86646670-86646689 None:intergenic 35.0%
TCTTAACCAAAACCATTCCA+TGG + chr8_1:86646677-86646696 Msa1222390:CDS 35.0%
! TAGTAACCATGGAATGGTTT+TGG - chr8_1:86646686-86646705 None:intergenic 35.0%
CTACAAATTGAAAACCCACA+AGG + chr8_1:86646743-86646762 Msa1222390:CDS 35.0%
GAAATTGAGACTCTCCAAAA+TGG + chr8_1:86646940-86646959 Msa1222390:CDS 35.0%
! TAGCTTGTATCTAACTCCTA+AGG - chr8_1:86647160-86647179 None:intergenic 35.0%
TTAGGAGTTAGATACAAGCT+AGG + chr8_1:86647159-86647178 Msa1222390:intron 35.0%
TAGGAGTTAGATACAAGCTA+GGG + chr8_1:86647160-86647179 Msa1222390:intron 35.0%
! TTTTGTGCAATTGTTATGCG+CGG + chr8_1:86647206-86647225 Msa1222390:intron 35.0%
!! AAAGTGGGTGACTTTTTCTT+GGG + chr8_1:86647302-86647321 Msa1222390:intron 35.0%
GTTGTGAGATTACTAGAAGA+GGG + chr8_1:86647330-86647349 Msa1222390:intron 35.0%
!! TTTTAGGAAATGGGAATGGA+TGG + chr8_1:86647357-86647376 Msa1222390:intron 35.0%
TGAAAAATAGAGAGAAGGCA+GGG - chr8_1:86647414-86647433 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG - chr8_1:86647415-86647434 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG + chr8_1:86647554-86647573 Msa1222390:intron 35.0%
GTGATGTCAAAACGGTTTAA+AGG - chr8_1:86647587-86647606 None:intergenic 35.0%
TCATAAGATAGGCAAGGTAA+AGG - chr8_1:86647659-86647678 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG + chr8_1:86647693-86647712 Msa1222390:intron 35.0%
AAACAATCAGCAGAGATTTG+AGG - chr8_1:86647945-86647964 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG + chr8_1:86647952-86647971 Msa1222390:intron 35.0%
ATGAAATCATGGGTTTGAAC+TGG + chr8_1:86648059-86648078 Msa1222390:intron 35.0%
GACAGTAGAACAGAAAATTG+TGG - chr8_1:86648257-86648276 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG + chr8_1:86648332-86648351 Msa1222390:intron 35.0%
TCAATTGAACTGAACTGTAG+TGG + chr8_1:86648398-86648417 Msa1222390:intron 35.0%
CAGTATAGAATTTCATCACC+TGG + chr8_1:86648466-86648485 Msa1222390:intron 35.0%
ATAGAATTTCATCACCTGGA+AGG + chr8_1:86648470-86648489 Msa1222390:intron 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG - chr8_1:86648540-86648559 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG - chr8_1:86648544-86648563 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG - chr8_1:86648624-86648643 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG - chr8_1:86648975-86648994 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG - chr8_1:86649065-86649084 None:intergenic 35.0%
! CCATGTTAAGAGTGTGTTTG+TGG - chr8_1:86646491-86646510 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG + chr8_1:86646488-86646507 Msa1222390:exon 40.0%
GAGAAGTAGTAACCATGGAA+TGG - chr8_1:86646692-86646711 None:intergenic 40.0%
AGGATAGGATAGAACCTTGT+GGG - chr8_1:86646760-86646779 None:intergenic 40.0%
! AAGTGGGTTTGAAAGAGGAT+AGG - chr8_1:86646775-86646794 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG - chr8_1:86646780-86646799 None:intergenic 40.0%
! CTAACTCCTAAGGTACTCTT+GGG - chr8_1:86647150-86647169 None:intergenic 40.0%
! TCTAACTCCTAAGGTACTCT+TGG - chr8_1:86647151-86647170 None:intergenic 40.0%
GTTAGATACAAGCTAGGGTA+TGG + chr8_1:86647165-86647184 Msa1222390:intron 40.0%
!! GAAAGTGGGTGACTTTTTCT+TGG + chr8_1:86647301-86647320 Msa1222390:intron 40.0%
!! AAGTGGGTGACTTTTTCTTG+GGG + chr8_1:86647303-86647322 Msa1222390:intron 40.0%
GGTTGTGAGATTACTAGAAG+AGG + chr8_1:86647329-86647348 Msa1222390:intron 40.0%
!! TGGCTTTTAGGAAATGGGAA+TGG + chr8_1:86647353-86647372 Msa1222390:intron 40.0%
ATGGGAATGGATGGAAAAGT+TGG + chr8_1:86647366-86647385 Msa1222390:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG + chr8_1:86647372-86647391 Msa1222390:intron 40.0%
GGCATCATCCTATATGAACA+TGG - chr8_1:86647565-86647584 None:intergenic 40.0%
CTTGATGCGTGATGTCAAAA+CGG - chr8_1:86647595-86647614 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG - chr8_1:86647880-86647899 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG + chr8_1:86647884-86647903 Msa1222390:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG + chr8_1:86647888-86647907 Msa1222390:intron 40.0%
CTCCTTCCATTTGACAAGAT+AGG - chr8_1:86647893-86647912 None:intergenic 40.0%
TCTTGTCAAATGGAAGGAGT+AGG + chr8_1:86647894-86647913 Msa1222390:intron 40.0%
CTTGTCAAATGGAAGGAGTA+GGG + chr8_1:86647895-86647914 Msa1222390:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG + chr8_1:86647896-86647915 Msa1222390:intron 40.0%
GTAGGGGGCTTAATGAATTT+AGG + chr8_1:86647912-86647931 Msa1222390:intron 40.0%
GGGGCTTAATGAATTTAGGA+GGG + chr8_1:86647916-86647935 Msa1222390:intron 40.0%
GCTTAATGAATTTAGGAGGG+TGG + chr8_1:86647919-86647938 Msa1222390:intron 40.0%
AACTTGGAATACACCCATCA+AGG - chr8_1:86648194-86648213 None:intergenic 40.0%
! GTCCTCACATTTTCCATAGA+AGG - chr8_1:86648337-86648356 None:intergenic 40.0%
GATGAGATGAAATTCCTTCC+AGG - chr8_1:86648487-86648506 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG - chr8_1:86648533-86648552 None:intergenic 40.0%
! AAGTGTTGTTAGGATGGATG+TGG - chr8_1:86648534-86648553 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG + chr8_1:86648533-86648552 Msa1222390:intron 40.0%
CAACCAAAATGCCACATTTC+GGG - chr8_1:86648623-86648642 None:intergenic 40.0%
ATTTAGCATGGTCCTGTCTA+AGG + chr8_1:86648873-86648892 Msa1222390:three_prime_UTR 40.0%
GACTTCACAAATCCTTAGAC+AGG - chr8_1:86648888-86648907 None:intergenic 40.0%
GTAAGATTTCTACGCGGTTG+TGG - chr8_1:86646415-86646434 None:intergenic 45.0%
ACACACTCTTAACATGGCGT+TGG + chr8_1:86646494-86646513 Msa1222390:exon 45.0%
! AGATGGTGGTGAAAGTCTCA+AGG - chr8_1:86646553-86646572 None:intergenic 45.0%
GTAGAGGAAGAAGAAGATGG+TGG - chr8_1:86646567-86646586 None:intergenic 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG - chr8_1:86646570-86646589 None:intergenic 45.0%
ACTGAAAGAGACACGAGTAG+AGG - chr8_1:86646583-86646602 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG + chr8_1:86646720-86646739 Msa1222390:CDS 45.0%
GAGGATAGGATAGAACCTTG+TGG - chr8_1:86646761-86646780 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG + chr8_1:86646843-86646862 Msa1222390:intron 45.0%
GGCATCAGCAAAGCGATTTA+GGG + chr8_1:86646844-86646863 Msa1222390:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG + chr8_1:86646851-86646870 Msa1222390:CDS 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG - chr8_1:86647141-86647160 None:intergenic 45.0%
!! TTCTTGCCCAAGAGTACCTT+AGG + chr8_1:86647141-86647160 Msa1222390:intron 45.0%
TACAAGCTAGGGTATGGAAC+TGG + chr8_1:86647171-86647190 Msa1222390:intron 45.0%
!! GGTGACTTTTTCTTGGGGTT+GGG + chr8_1:86647308-86647327 Msa1222390:intron 45.0%
GTGAGATTACTAGAAGAGGG+TGG + chr8_1:86647333-86647352 Msa1222390:intron 45.0%
! ACTAGAAGAGGGTGGCTTTT+AGG + chr8_1:86647341-86647360 Msa1222390:intron 45.0%
!! AGAGGGTGGCTTTTAGGAAA+TGG + chr8_1:86647347-86647366 Msa1222390:intron 45.0%
!! GAGGGTGGCTTTTAGGAAAT+GGG + chr8_1:86647348-86647367 Msa1222390:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG + chr8_1:86647897-86647916 Msa1222390:intron 45.0%
GGGGGCTTAATGAATTTAGG+AGG + chr8_1:86647915-86647934 Msa1222390:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG - chr8_1:86648528-86648547 None:intergenic 45.0%
! TCACCCGAAATGTGGCATTT+TGG + chr8_1:86648617-86648636 Msa1222390:intron 45.0%
TGAAAGTCTCAAGGCGGCAA+AGG - chr8_1:86646544-86646563 None:intergenic 50.0%
! TGGTGGTGAAAGTCTCAAGG+CGG - chr8_1:86646550-86646569 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG - chr8_1:86646697-86646716 None:intergenic 50.0%
GATACGATAGTGAGAGAGCG+AGG - chr8_1:86646714-86646733 None:intergenic 50.0%
! ACGCACGATTTTTCCAGCAC+CGG - chr8_1:86646873-86646892 None:intergenic 50.0%
GTGCTGGAAAAATCGTGCGT+CGG + chr8_1:86646873-86646892 Msa1222390:CDS 50.0%
!! GGGTGACTTTTTCTTGGGGT+TGG + chr8_1:86647307-86647326 Msa1222390:intron 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG + chr8_1:86648587-86648606 Msa1222390:intron 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG + chr8_1:86648592-86648611 Msa1222390:intron 50.0%
GCTTGGATTCACCCGAAATG+TGG + chr8_1:86648609-86648628 Msa1222390:intron 50.0%
!! CATGGCGTTGGCTTCTGCAA+CGG + chr8_1:86646506-86646525 Msa1222390:exon 55.0%
AAGTCTCAAGGCGGCAAAGG+AGG - chr8_1:86646541-86646560 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG + chr8_1:86646857-86646876 Msa1222390:CDS 55.0%
AAAATCGTGCGTCGGAGAGC+AGG + chr8_1:86646881-86646900 Msa1222390:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86646366 86649185 86646366 ID=Msa1222390;Name=Msa1222390
chr8_1 mRNA 86646366 86649185 86646366 ID=Msa1222390-mRNA-1;Parent=Msa1222390;Name=Msa1222390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=141|1|1|1|1|1|3|341|150
chr8_1 exon 86646366 86646764 86646366 ID=Msa1222390-mRNA-1:exon:31163;Parent=Msa1222390-mRNA-1
chr8_1 exon 86646845 86646961 86646845 ID=Msa1222390-mRNA-1:exon:31164;Parent=Msa1222390-mRNA-1
chr8_1 exon 86648767 86649185 86648767 ID=Msa1222390-mRNA-1:exon:31165;Parent=Msa1222390-mRNA-1
chr8_1 five_prime_UTR 86646366 86646506 86646366 ID=Msa1222390-mRNA-1:five_prime_utr;Parent=Msa1222390-mRNA-1
chr8_1 CDS 86646507 86646764 86646507 ID=Msa1222390-mRNA-1:cds;Parent=Msa1222390-mRNA-1
chr8_1 CDS 86646845 86646961 86646845 ID=Msa1222390-mRNA-1:cds;Parent=Msa1222390-mRNA-1
chr8_1 CDS 86648767 86648844 86648767 ID=Msa1222390-mRNA-1:cds;Parent=Msa1222390-mRNA-1
chr8_1 three_prime_UTR 86648845 86649185 86648845 ID=Msa1222390-mRNA-1:three_prime_utr;Parent=Msa1222390-mRNA-1
Gene Sequence

>Msa1222390

ATGGCGTTGGCTTCTGCAACGGTCACAGTCTCCTCCTTTGCCGCCTTGAGACTTTCACCACCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTCGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAAGAGGAAATTGAGACTCTCCAAAATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>Msa1222390

MALASATVTVSSFAALRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRKAT*