AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222580 MtrunA17_Chr4g0073731 89.098 266 12 1 1 249 1 266 7.27e-164 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222580 AT2G24060.1 50.741 270 94 5 1 237 1 264 2.44e-75 231
Msa1222580 AT4G30690.1 52.590 251 93 5 1 233 14 256 2.83e-74 228
Msa1222580 AT4G30690.2 45.418 251 83 5 1 233 14 228 1.44e-59 189

Find 78 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGCTTCAGCTTTCTT+TGG 0.232978 8_1:-86824904 None:intergenic
GGATTTGAAGGAGCTTAAAA+TGG 0.251941 8_1:+86823606 Msa1222580:CDS
GTGGTTAATGGGATTCCTTC+AGG 0.326287 8_1:-86825125 None:intergenic
TTGTTAGAATAATGAATTAC+AGG 0.335848 8_1:+86822168 Msa1222580:CDS
TATTGATCAGAGTCAGAATA+TGG 0.349868 8_1:+86821615 Msa1222580:CDS
TTAGAATACGTACCTAAGTT+TGG 0.359504 8_1:-86821495 None:intergenic
AACAGAGCAATATCAGTTAC+AGG 0.362956 8_1:-86824993 None:intergenic
CACAAGGCTGATTGATCATC+TGG 0.369737 8_1:+86825182 Msa1222580:three_prime_UTR
TTGTCGAAGAGAGTGGTTAA+TGG 0.371981 8_1:-86825137 None:intergenic
TCATCGTCAGCATCTTTGTT+AGG 0.382465 8_1:-86821455 None:intergenic
TTCTAGAAGTTTAATTATAG+AGG 0.385592 8_1:+86825076 Msa1222580:three_prime_UTR
CCAATGAAAATTTGAGGATT+GGG 0.386900 8_1:-86821124 None:intergenic
TGTCGAAGAGAGTGGTTAAT+GGG 0.393354 8_1:-86825136 None:intergenic
ACCAATGAAAATTTGAGGAT+TGG 0.404550 8_1:-86821125 None:intergenic
TGCGAGGCTTTGAGTTTAAC+GGG 0.413405 8_1:-86821284 None:intergenic
GATTTGAAGGAGCTTAAAAT+GGG 0.419531 8_1:+86823607 Msa1222580:CDS
GAACAACCAATGAAAATTTG+AGG 0.421285 8_1:-86821130 None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG 0.431987 8_1:-86821285 None:intergenic
TAATTCATTATTCTAACAAC+AGG 0.442385 8_1:-86822164 None:intergenic
AAGGTCATAGTAAACCTTAA+AGG 0.442796 8_1:+86824435 Msa1222580:CDS
GCTTTCTTTGGTGTTTCTTG+AGG 0.453019 8_1:-86824892 None:intergenic
AACGGGAACGACGGTGGTGG+TGG 0.470380 8_1:-86821267 None:intergenic
TACGGGATTCTAGTTGTAGA+AGG 0.471523 8_1:+86824965 Msa1222580:three_prime_UTR
GTGTAAACCAACGCCATGGC+TGG 0.473725 8_1:+86821239 Msa1222580:exon
CGTCCTTCCGCCTACGGTGG+CGG 0.475627 8_1:+86821410 Msa1222580:CDS
AACCTCCGTCCTTCCGCCTA+CGG 0.484697 8_1:+86821404 Msa1222580:CDS
AGGGAGAAGATTGAAAATTG+AGG 0.492839 8_1:-86821340 None:intergenic
GTGGGAAGGAAGAGTGAATG+AGG 0.494919 8_1:-86821360 None:intergenic
AGCTAGTCGGATGGATTTGA+AGG 0.496946 8_1:+86823594 Msa1222580:intron
GGGAGAAGATTGAAAATTGA+GGG 0.497096 8_1:-86821339 None:intergenic
GAAATAGGTCGAATACCGTT+AGG 0.499801 8_1:+86821590 Msa1222580:intron
GCGTTGGTTTACACTTTCCA+CGG 0.503109 8_1:-86821230 None:intergenic
GATTGAAAATTGAGGGAATG+AGG 0.509324 8_1:-86821332 None:intergenic
CCTTCCGCCTACGGTGGCGG+TGG 0.531353 8_1:+86821413 Msa1222580:CDS
TGGGAAGGAAGAGTGAATGA+GGG 0.537972 8_1:-86821359 None:intergenic
GAAAATTTGAGGATTGGGCC+TGG 0.541739 8_1:-86821119 None:intergenic
GATCAGCAGAAGAAAAGTGC+TGG 0.542127 8_1:+86823469 Msa1222580:CDS
CGCCACCGTAGGCGGAAGGA+CGG 0.545325 8_1:-86821409 None:intergenic
TCGTCAGCATCTTTGTTAGG+AGG 0.545365 8_1:-86821452 None:intergenic
TCCCACGCAACCGTTCGTTA+CGG 0.549673 8_1:+86821377 Msa1222580:CDS
CATAGTTGAAAACTTCCATA+CGG 0.554407 8_1:+86824947 Msa1222580:exon
AGCTGAAGCAGATGAAGTCT+CGG 0.555824 8_1:+86824912 Msa1222580:CDS
TCAGCATCTTTGTTAGGAGG+AGG 0.559988 8_1:-86821449 None:intergenic
CTCTCGACCTCTCCAAACTT+AGG 0.560626 8_1:+86821483 Msa1222580:CDS
TAACGAACGGTTGCGTGGGA+AGG 0.567710 8_1:-86821374 None:intergenic
TTCATTATTCTAACAACAGG+AGG 0.568824 8_1:-86822161 None:intergenic
GATCAGAGTCAGAATATGGT+TGG 0.572223 8_1:+86821619 Msa1222580:CDS
TAACTGATATTGCTCTGTTG+TGG 0.573517 8_1:+86824997 Msa1222580:three_prime_UTR
TTTGTGGGAATTTAATAACC+AGG 0.573535 8_1:+86821101 None:intergenic
GAAGTTGCCACCGCCACCGT+AGG 0.573642 8_1:-86821420 None:intergenic
ACCGTAACGAACGGTTGCGT+GGG 0.576730 8_1:-86821378 None:intergenic
GTTGCCACCGCCACCGTAGG+CGG 0.587312 8_1:-86821417 None:intergenic
ATTGAAACGCTGAAACCTGA+AGG 0.588692 8_1:+86825110 Msa1222580:three_prime_UTR
ATAGTTGAAAACTTCCATAC+GGG 0.590817 8_1:+86824948 Msa1222580:exon
TCATGTGCAGCTTGCAACAG+AGG 0.599439 8_1:+86824801 Msa1222580:intron
GAATACATTGTCGAAGAGAG+TGG 0.599815 8_1:-86825144 None:intergenic
CATAGAAGAACAACAGCACA+AGG 0.600188 8_1:+86825166 Msa1222580:three_prime_UTR
TTTCAGCGTTTCAATAGACA+AGG 0.602016 8_1:-86825102 None:intergenic
GGTAATGCCAGCCATGGCGT+TGG 0.603488 8_1:-86821246 None:intergenic
GAGTTTAACGGGAACGACGG+TGG 0.603870 8_1:-86821273 None:intergenic
CCACCGCCACCGTAGGCGGA+AGG 0.608125 8_1:-86821413 None:intergenic
CACCGTAGGCGGAAGGACGG+AGG 0.610477 8_1:-86821406 None:intergenic
TTTAACGGGAACGACGGTGG+TGG 0.617395 8_1:-86821270 None:intergenic
GGTGGTGGTAATGCCAGCCA+TGG 0.622734 8_1:-86821252 None:intergenic
TCTACAACTAGAATCCCGTA+TGG 0.633129 8_1:-86824962 None:intergenic
TTTATTAGAGAATAGATGCG+AGG 0.635663 8_1:-86821300 None:intergenic
TGTGCAGCTTGCAACAGAGG+AGG 0.648795 8_1:+86824804 Msa1222580:intron
ATACTTACTAGAACATGCAT+CGG 0.651186 8_1:+86821200 Msa1222580:five_prime_UTR
GAAAGTGTAAACCAACGCCA+TGG 0.651302 8_1:+86821235 Msa1222580:exon
ACTCTGATCAATAAGCCTAA+CGG 0.652818 8_1:-86821605 None:intergenic
GAGGTTAACACCGTAACGAA+CGG 0.655700 8_1:-86821387 None:intergenic
ACAGAGCAATATCAGTTACA+GGG 0.664630 8_1:-86824992 None:intergenic
TTTGAGTTTAACGGGAACGA+CGG 0.669820 8_1:-86821276 None:intergenic
CTGTACGTTTGAAAGCTGCA+CGG 0.670288 8_1:+86824292 Msa1222580:CDS
ATTTGAAGGAGCTTAAAATG+GGG 0.674873 8_1:+86823608 Msa1222580:CDS
GTAGGTAATAGTATCTGCAG+AGG 0.675285 8_1:+86822133 Msa1222580:intron
ATACGTACCTAAGTTTGGAG+AGG 0.687696 8_1:-86821490 None:intergenic
CATGCATCGGAGTTGAACCG+TGG 0.702183 8_1:+86821213 Msa1222580:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTAAATGATATAA+AGG - chr8_1:86823525-86823544 None:intergenic 10.0%
!! TGTAAAGTTTAATATATTTC+AGG - chr8_1:86822210-86822229 None:intergenic 15.0%
!! AATGATTATATTATATGGTT+TGG + chr8_1:86822547-86822566 Msa1222580:intron 15.0%
!! TGTAAAAGAAGAAAAATATA+AGG - chr8_1:86823414-86823433 None:intergenic 15.0%
!!! AGAAATATTGATGATTAAAT+TGG - chr8_1:86823756-86823775 None:intergenic 15.0%
!!! TAATCATCAATATTTCTATA+AGG + chr8_1:86823759-86823778 Msa1222580:intron 15.0%
!!! AATCATCAATATTTCTATAA+GGG + chr8_1:86823760-86823779 Msa1222580:intron 15.0%
!! AAAAATTAACAAGTAAAGAT+AGG - chr8_1:86823868-86823887 None:intergenic 15.0%
!!! ATTTTGTTTATTGTTTTGTT+TGG + chr8_1:86824230-86824249 Msa1222580:intron 15.0%
!! GTAAATGATTTAAATAGAAA+AGG - chr8_1:86824675-86824694 None:intergenic 15.0%
!!! ATATCTTATTTTATTATCAC+TGG + chr8_1:86824728-86824747 Msa1222580:intron 15.0%
!! TTTAGATATAAAATACACTT+AGG - chr8_1:86824772-86824791 None:intergenic 15.0%
!! ACAAAAATTCGAAATAGAAA+TGG - chr8_1:86821544-86821563 None:intergenic 20.0%
!!! TTACTTTCGATTTTTGAAAT+AGG + chr8_1:86821575-86821594 Msa1222580:intron 20.0%
!! TAATTCATTATTCTAACAAC+AGG - chr8_1:86822167-86822186 None:intergenic 20.0%
!! TTGTTAGAATAATGAATTAC+AGG + chr8_1:86822168-86822187 Msa1222580:CDS 20.0%
!! AAGTTTAATATATTTCAGGA+CGG - chr8_1:86822206-86822225 None:intergenic 20.0%
!! ATATAGTATAAAAAAACCAG+TGG + chr8_1:86822307-86822326 Msa1222580:intron 20.0%
!!! AAAGCAATGCTTTTAAAAAT+CGG + chr8_1:86822343-86822362 Msa1222580:intron 20.0%
!!! ATTATATTATATGGTTTGGA+TGG + chr8_1:86822551-86822570 Msa1222580:intron 20.0%
!! TATACCAATGTTATGAAAAT+TGG - chr8_1:86822635-86822654 None:intergenic 20.0%
!!! ATTTTCATAACATTGGTATA+AGG + chr8_1:86822635-86822654 Msa1222580:intron 20.0%
!!! TTATTTCGAATGTTCATTTT+TGG + chr8_1:86822683-86822702 Msa1222580:intron 20.0%
!!! AAATGGATAACTCAATTTTT+AGG + chr8_1:86822891-86822910 Msa1222580:intron 20.0%
!!! AATGGATAACTCAATTTTTA+GGG + chr8_1:86822892-86822911 Msa1222580:intron 20.0%
!!! TGTTATTTTTGTAAGTCTTT+AGG + chr8_1:86822918-86822937 Msa1222580:intron 20.0%
!! ACCATCTTAATCTTAAAAAA+CGG - chr8_1:86822954-86822973 None:intergenic 20.0%
!!! ATTTACAATTTTACAGAACT+CGG + chr8_1:86823532-86823551 Msa1222580:intron 20.0%
!!! TTTTCTATGAAACATAAGAA+AGG - chr8_1:86823660-86823679 None:intergenic 20.0%
!!! TATTTTATATCTAAACCACA+CGG + chr8_1:86824777-86824796 Msa1222580:intron 20.0%
!!! TTCTAGAAGTTTAATTATAG+AGG + chr8_1:86825076-86825095 Msa1222580:three_prime_UTR 20.0%
!! AAAAATGAAATGAAATTCGA+AGG - chr8_1:86825250-86825269 None:intergenic 20.0%
! AATTCGAAATAGAAATGGAA+TGG - chr8_1:86821539-86821558 None:intergenic 25.0%
!!! GCTGTTTTAATAAGATATCT+TGG + chr8_1:86821892-86821911 Msa1222580:intron 25.0%
! GATAGACAATTATCCAAATT+TGG + chr8_1:86822744-86822763 Msa1222580:intron 25.0%
! TGTCTTGAATGTTGTTAATT+TGG + chr8_1:86823132-86823151 Msa1222580:intron 25.0%
!! TTGAATGTTGTTAATTTGGA+TGG + chr8_1:86823136-86823155 Msa1222580:intron 25.0%
!!! TCATTCCGATTTTGTTTTTT+CGG + chr8_1:86823181-86823200 Msa1222580:intron 25.0%
! AGCTACATTAAAAAGATCAT+TGG - chr8_1:86823578-86823597 None:intergenic 25.0%
!! ATCTTTTTAATGTAGCTAGT+CGG + chr8_1:86823581-86823600 Msa1222580:intron 25.0%
! ATATCTGAATTCTTGTTCTT+TGG + chr8_1:86823695-86823714 Msa1222580:intron 25.0%
! TTCTGTCAAGATATAAATGA+TGG - chr8_1:86824063-86824082 None:intergenic 25.0%
! AGATATAAAATACACTTAGG+CGG - chr8_1:86824769-86824788 None:intergenic 25.0%
!! ATTTTATATCTAAACCACAC+GGG + chr8_1:86824778-86824797 Msa1222580:intron 25.0%
CCAATGAAAATTTGAGGATT+GGG - chr8_1:86821127-86821146 None:intergenic 30.0%
ACCAATGAAAATTTGAGGAT+TGG - chr8_1:86821128-86821147 None:intergenic 30.0%
GAACAACCAATGAAAATTTG+AGG - chr8_1:86821133-86821152 None:intergenic 30.0%
ATACTTACTAGAACATGCAT+CGG + chr8_1:86821200-86821219 Msa1222580:five_prime_UTR 30.0%
TTTATTAGAGAATAGATGCG+AGG - chr8_1:86821303-86821322 None:intergenic 30.0%
TTAGAATACGTACCTAAGTT+TGG - chr8_1:86821498-86821517 None:intergenic 30.0%
GAAATAGAAATGGAATGGAA+TGG - chr8_1:86821534-86821553 None:intergenic 30.0%
TATTGATCAGAGTCAGAATA+TGG + chr8_1:86821615-86821634 Msa1222580:CDS 30.0%
TTGACTCAGTTCTATCATAT+AGG + chr8_1:86821711-86821730 Msa1222580:intron 30.0%
TCTATCATATAGGCATGATT+TGG + chr8_1:86821721-86821740 Msa1222580:intron 30.0%
!! TGAACTGATTTGAAACAGTT+GGG - chr8_1:86822010-86822029 None:intergenic 30.0%
CATAAGTAATATGTGCTCAA+AGG - chr8_1:86822066-86822085 None:intergenic 30.0%
TTCATTATTCTAACAACAGG+AGG - chr8_1:86822164-86822183 None:intergenic 30.0%
ATAAAAAAACCAGTGGTTGA+TGG + chr8_1:86822314-86822333 Msa1222580:intron 30.0%
CAATGTTATGAAAATTGGAC+CGG - chr8_1:86822630-86822649 None:intergenic 30.0%
TTCATAACATTGGTATAAGG+TGG + chr8_1:86822638-86822657 Msa1222580:intron 30.0%
!! GTTCCAATTTTAATGTGACA+GGG + chr8_1:86822809-86822828 Msa1222580:intron 30.0%
!! TTCCAATTTTAATGTGACAG+GGG + chr8_1:86822810-86822829 Msa1222580:intron 30.0%
TAAATATCTGCAGTGTGAAA+TGG + chr8_1:86822874-86822893 Msa1222580:intron 30.0%
!!! GCCGTTTTTTAAGATTAAGA+TGG + chr8_1:86822950-86822969 Msa1222580:intron 30.0%
TAAGAGCAAGAAAAAAAGAC+AGG - chr8_1:86823061-86823080 None:intergenic 30.0%
! ATGTTGTTAATTTGGATGGT+AGG + chr8_1:86823140-86823159 Msa1222580:intron 30.0%
!!! CATTCCGATTTTGTTTTTTC+GGG + chr8_1:86823182-86823201 Msa1222580:intron 30.0%
!!! ATTCCGATTTTGTTTTTTCG+GGG + chr8_1:86823183-86823202 Msa1222580:intron 30.0%
TTTCATGAAACAACGTGTTT+GGG - chr8_1:86823266-86823285 None:intergenic 30.0%
TTGTGTTAAGTGAAAGTCAA+AGG - chr8_1:86823298-86823317 None:intergenic 30.0%
! CTGGTAAGCATTGTATTTAT+TGG + chr8_1:86823488-86823507 Msa1222580:intron 30.0%
GATTTGAAGGAGCTTAAAAT+GGG + chr8_1:86823607-86823626 Msa1222580:CDS 30.0%
ATTTGAAGGAGCTTAAAATG+GGG + chr8_1:86823608-86823627 Msa1222580:CDS 30.0%
AAAATGGGGTAATATCCTAA+AGG + chr8_1:86823622-86823641 Msa1222580:intron 30.0%
AACATAAGAAAGGATGATCT+AGG - chr8_1:86823650-86823669 None:intergenic 30.0%
TTATTGCCGTACATTCTTAT+GGG + chr8_1:86823810-86823829 Msa1222580:intron 30.0%
TATGTTTATCTTTGAGCAGT+AGG - chr8_1:86824017-86824036 None:intergenic 30.0%
TACTGCTCAAAGATAAACAT+AGG + chr8_1:86824016-86824035 Msa1222580:intron 30.0%
TCAAAGATAAACATAGGAAG+TGG + chr8_1:86824022-86824041 Msa1222580:intron 30.0%
TTAAAGCATAAACCTTGTCT+TGG + chr8_1:86824093-86824112 Msa1222580:intron 30.0%
TAAAGCATAAACCTTGTCTT+GGG + chr8_1:86824094-86824113 Msa1222580:intron 30.0%
AAGAAAAATAACCCAAGACA+AGG - chr8_1:86824108-86824127 None:intergenic 30.0%
!! TAAAAAGTAAACTCTGGAAC+TGG - chr8_1:86824154-86824173 None:intergenic 30.0%
GGTTCATAAAAAGTAAACTC+TGG - chr8_1:86824160-86824179 None:intergenic 30.0%
!! ATTTTTGAATGATGGTGACA+AGG + chr8_1:86824317-86824336 Msa1222580:CDS 30.0%
! TCAAGTGTATTCAGATCTTT+TGG + chr8_1:86824395-86824414 Msa1222580:intron 30.0%
AAGGTCATAGTAAACCTTAA+AGG + chr8_1:86824435-86824454 Msa1222580:CDS 30.0%
!! ATTCTTTTTCACGACCTTTA+AGG - chr8_1:86824452-86824471 None:intergenic 30.0%
AGCATTTGTACCAAAAAAGA+AGG + chr8_1:86824576-86824595 Msa1222580:intron 30.0%
AAAATAAGATATCAGCAGAG+TGG - chr8_1:86824720-86824739 None:intergenic 30.0%
!! TTATGAAGATGTTTTTGTCG+CGG - chr8_1:86824840-86824859 None:intergenic 30.0%
!!! TTCTGCACTTCAGTTTTATT+TGG - chr8_1:86824871-86824890 None:intergenic 30.0%
CATAGTTGAAAACTTCCATA+CGG + chr8_1:86824947-86824966 Msa1222580:exon 30.0%
ATAGTTGAAAACTTCCATAC+GGG + chr8_1:86824948-86824967 Msa1222580:exon 30.0%
! CCCAATCCTCAAATTTTCAT+TGG + chr8_1:86821124-86821143 Msa1222580:five_prime_UTR 35.0%
GATTGAAAATTGAGGGAATG+AGG - chr8_1:86821335-86821354 None:intergenic 35.0%
GGGAGAAGATTGAAAATTGA+GGG - chr8_1:86821342-86821361 None:intergenic 35.0%
AGGGAGAAGATTGAAAATTG+AGG - chr8_1:86821343-86821362 None:intergenic 35.0%
ACTCTGATCAATAAGCCTAA+CGG - chr8_1:86821608-86821627 None:intergenic 35.0%
TGAAGATGCTGAACTTGATT+TGG + chr8_1:86821675-86821694 Msa1222580:intron 35.0%
! TAATGAGTATTGCGAATGCA+AGG + chr8_1:86821946-86821965 Msa1222580:intron 35.0%
! AATGAGTATTGCGAATGCAA+GGG + chr8_1:86821947-86821966 Msa1222580:intron 35.0%
!! GGATTGATTGAGCTATTTCT+AGG + chr8_1:86821968-86821987 Msa1222580:intron 35.0%
!! GTGAACTGATTTGAAACAGT+TGG - chr8_1:86822011-86822030 None:intergenic 35.0%
AATATGTGCTCAAAGGTCAA+TGG - chr8_1:86822059-86822078 None:intergenic 35.0%
ATGACATGACACAATTGCAT+AGG + chr8_1:86822083-86822102 Msa1222580:intron 35.0%
TGCAGATACTATTACCTACA+GGG - chr8_1:86822132-86822151 None:intergenic 35.0%
GCTAGACAATGATACAACTA+AGG - chr8_1:86822418-86822437 None:intergenic 35.0%
!!! GGTTTGGATGGTTAGTTTTT+TGG + chr8_1:86822563-86822582 Msa1222580:intron 35.0%
! CGGTCCAATTTTCATAACAT+TGG + chr8_1:86822628-86822647 Msa1222580:intron 35.0%
ACTTGTGGCTACTTAATGAT+TGG - chr8_1:86822712-86822731 None:intergenic 35.0%
ATCATTAAGTAGCCACAAGT+AGG + chr8_1:86822712-86822731 Msa1222580:intron 35.0%
GAAACGCTATACACCAAATT+TGG - chr8_1:86822760-86822779 None:intergenic 35.0%
!! GGTTCCAATTTTAATGTGAC+AGG + chr8_1:86822808-86822827 Msa1222580:intron 35.0%
CTTTCATGAAACAACGTGTT+TGG - chr8_1:86823267-86823286 None:intergenic 35.0%
ACACAATCAGAAGAATCTCT+TGG + chr8_1:86823312-86823331 Msa1222580:intron 35.0%
AATCAGAAGAATCTCTTGGT+GGG + chr8_1:86823316-86823335 Msa1222580:intron 35.0%
! TTTTAATGTAGCTAGTCGGA+TGG + chr8_1:86823585-86823604 Msa1222580:intron 35.0%
GGATTTGAAGGAGCTTAAAA+TGG + chr8_1:86823606-86823625 Msa1222580:CDS 35.0%
AGAATGGGTCAAATCTGATT+AGG - chr8_1:86823723-86823742 None:intergenic 35.0%
AATCAGATTTGACCCATTCT+TGG + chr8_1:86823723-86823742 Msa1222580:intron 35.0%
ATTTGACCCATTCTTGGTTA+TGG + chr8_1:86823729-86823748 Msa1222580:intron 35.0%
ATTGGTCCATAACCAAGAAT+GGG - chr8_1:86823738-86823757 None:intergenic 35.0%
AATTGGTCCATAACCAAGAA+TGG - chr8_1:86823739-86823758 None:intergenic 35.0%
GTTATTGCCGTACATTCTTA+TGG + chr8_1:86823809-86823828 Msa1222580:intron 35.0%
TATTGCCGTACATTCTTATG+GGG + chr8_1:86823811-86823830 Msa1222580:intron 35.0%
GTAAACCCCATAAGAATGTA+CGG - chr8_1:86823819-86823838 None:intergenic 35.0%
TTACTCTATGTTCTCTTGGA+AGG + chr8_1:86823835-86823854 Msa1222580:intron 35.0%
! ATTGTTCACAACTTGCTTCT+TGG + chr8_1:86823938-86823957 Msa1222580:intron 35.0%
TTGCTTCTTGGTTATGAACT+TGG + chr8_1:86823950-86823969 Msa1222580:intron 35.0%
TGCTTCTTGGTTATGAACTT+GGG + chr8_1:86823951-86823970 Msa1222580:intron 35.0%
TTATGAACTTGGGTTCAGTT+AGG + chr8_1:86823961-86823980 Msa1222580:intron 35.0%
AGGATTAAACAAACTCCTCT+TGG - chr8_1:86823997-86824016 None:intergenic 35.0%
! GCACGGAAATTTTTGAATGA+TGG + chr8_1:86824309-86824328 Msa1222580:CDS 35.0%
AAGGTCGTGAAAAAGAATTC+AGG + chr8_1:86824454-86824473 Msa1222580:CDS 35.0%
ACAGAGCAATATCAGTTACA+GGG - chr8_1:86824995-86825014 None:intergenic 35.0%
AACAGAGCAATATCAGTTAC+AGG - chr8_1:86824996-86825015 None:intergenic 35.0%
TAACTGATATTGCTCTGTTG+TGG + chr8_1:86824997-86825016 Msa1222580:three_prime_UTR 35.0%
TTTCAGCGTTTCAATAGACA+AGG - chr8_1:86825105-86825124 None:intergenic 35.0%
! TTTGAGTTTAACGGGAACGA+CGG - chr8_1:86821279-86821298 None:intergenic 40.0%
!! ATGCGAGGCTTTGAGTTTAA+CGG - chr8_1:86821288-86821307 None:intergenic 40.0%
TCATCGTCAGCATCTTTGTT+AGG - chr8_1:86821458-86821477 None:intergenic 40.0%
ATACGTACCTAAGTTTGGAG+AGG - chr8_1:86821493-86821512 None:intergenic 40.0%
GAAATAGGTCGAATACCGTT+AGG + chr8_1:86821590-86821609 Msa1222580:intron 40.0%
GATCAGAGTCAGAATATGGT+TGG + chr8_1:86821619-86821638 Msa1222580:CDS 40.0%
TGGAGTAGTATCTCTTGATC+AGG + chr8_1:86821639-86821658 Msa1222580:intron 40.0%
TCTTGATCAGGCAATTCGAA+TGG + chr8_1:86821651-86821670 Msa1222580:intron 40.0%
GCAGATACTATTACCTACAG+GGG - chr8_1:86822131-86822150 None:intergenic 40.0%
CTGCAGATACTATTACCTAC+AGG - chr8_1:86822133-86822152 None:intergenic 40.0%
GTAGGTAATAGTATCTGCAG+AGG + chr8_1:86822133-86822152 Msa1222580:intron 40.0%
TTTGTAATGCCATCAACCAC+TGG - chr8_1:86822326-86822345 None:intergenic 40.0%
! AATCGGTTCAGTCATTGAAC+TGG + chr8_1:86822360-86822379 Msa1222580:intron 40.0%
ACTAAGGTTGAACCACTGAA+CGG - chr8_1:86822402-86822421 None:intergenic 40.0%
TGGTATAAGGTGGTCATGTA+AGG + chr8_1:86822648-86822667 Msa1222580:intron 40.0%
AGTAGCCACAAGTAGGTTAT+AGG + chr8_1:86822719-86822738 Msa1222580:intron 40.0%
ATCGTCCTATAACCTACTTG+TGG - chr8_1:86822727-86822746 None:intergenic 40.0%
!! TCTAGCCTTATGCAACTACT+TGG + chr8_1:86822785-86822804 Msa1222580:intron 40.0%
!! CTAGCCTTATGCAACTACTT+GGG + chr8_1:86822786-86822805 Msa1222580:intron 40.0%
!! TAGCCTTATGCAACTACTTG+GGG + chr8_1:86822787-86822806 Msa1222580:intron 40.0%
CTCCCCTGTCACATTAAAAT+TGG - chr8_1:86822815-86822834 None:intergenic 40.0%
CCACCCCGAAAAAACAAAAT+CGG - chr8_1:86823189-86823208 None:intergenic 40.0%
!!! CGATTTTGTTTTTTCGGGGT+GGG + chr8_1:86823187-86823206 Msa1222580:intron 40.0%
!!! GATTTTGTTTTTTCGGGGTG+GGG + chr8_1:86823188-86823207 Msa1222580:intron 40.0%
CAATCAGAAGAATCTCTTGG+TGG + chr8_1:86823315-86823334 Msa1222580:intron 40.0%
ATCAGAAGAATCTCTTGGTG+GGG + chr8_1:86823317-86823336 Msa1222580:intron 40.0%
!! ATAAGGAACGCTGACTTTCA+AGG - chr8_1:86823397-86823416 None:intergenic 40.0%
GGGTTTACTCTATGTTCTCT+TGG + chr8_1:86823831-86823850 Msa1222580:intron 40.0%
ACATAGGAAGTGGCAAATGT+CGG + chr8_1:86824032-86824051 Msa1222580:intron 40.0%
CTACAACTCAAAACTAACGC+TGG - chr8_1:86824181-86824200 None:intergenic 40.0%
! TCTTTTGGATCAATTGCTGC+AGG + chr8_1:86824410-86824429 Msa1222580:intron 40.0%
! AGACGTTTTCAGAACGATGT+TGG + chr8_1:86824498-86824517 Msa1222580:CDS 40.0%
! GACGTTTTCAGAACGATGTT+GGG + chr8_1:86824499-86824518 Msa1222580:CDS 40.0%
! TTTTCAGAACGATGTTGGGA+AGG + chr8_1:86824503-86824522 Msa1222580:CDS 40.0%
!!! CGTCATAGGACCTTCTTTTT+TGG - chr8_1:86824589-86824608 None:intergenic 40.0%
GTATCTGTAAAGCACGTCAT+AGG - chr8_1:86824603-86824622 None:intergenic 40.0%
GTGCTTTACAGATACTCTCT+TGG + chr8_1:86824608-86824627 Msa1222580:intron 40.0%
!! GCTTTCTTTGGTGTTTCTTG+AGG - chr8_1:86824895-86824914 None:intergenic 40.0%
TCATCTGCTTCAGCTTTCTT+TGG - chr8_1:86824907-86824926 None:intergenic 40.0%
TCTACAACTAGAATCCCGTA+TGG - chr8_1:86824965-86824984 None:intergenic 40.0%
! TACGGGATTCTAGTTGTAGA+AGG + chr8_1:86824965-86824984 Msa1222580:three_prime_UTR 40.0%
ATTGAAACGCTGAAACCTGA+AGG + chr8_1:86825110-86825129 Msa1222580:three_prime_UTR 40.0%
TGTCGAAGAGAGTGGTTAAT+GGG - chr8_1:86825139-86825158 None:intergenic 40.0%
TTGTCGAAGAGAGTGGTTAA+TGG - chr8_1:86825140-86825159 None:intergenic 40.0%
GAATACATTGTCGAAGAGAG+TGG - chr8_1:86825147-86825166 None:intergenic 40.0%
CATAGAAGAACAACAGCACA+AGG + chr8_1:86825166-86825185 Msa1222580:three_prime_UTR 40.0%
GAAAATTTGAGGATTGGGCC+TGG - chr8_1:86821122-86821141 None:intergenic 45.0%
!! GCGTTGGTTTACACTTTCCA+CGG - chr8_1:86821233-86821252 None:intergenic 45.0%
! GAAAGTGTAAACCAACGCCA+TGG + chr8_1:86821235-86821254 Msa1222580:exon 45.0%
!! TGCGAGGCTTTGAGTTTAAC+GGG - chr8_1:86821287-86821306 None:intergenic 45.0%
TGGGAAGGAAGAGTGAATGA+GGG - chr8_1:86821362-86821381 None:intergenic 45.0%
GAGGTTAACACCGTAACGAA+CGG - chr8_1:86821390-86821409 None:intergenic 45.0%
TCAGCATCTTTGTTAGGAGG+AGG - chr8_1:86821452-86821471 None:intergenic 45.0%
TCGTCAGCATCTTTGTTAGG+AGG - chr8_1:86821455-86821474 None:intergenic 45.0%
TTGATTAGACTCCTCCTGAC+TGG + chr8_1:86822592-86822611 Msa1222580:intron 45.0%
!! AAAATTGGACCGGCTGGTTT+GGG - chr8_1:86822620-86822639 None:intergenic 45.0%
GTTATGAAAATTGGACCGGC+TGG - chr8_1:86822626-86822645 None:intergenic 45.0%
GAACCCCAAGTAGTTGCATA+AGG - chr8_1:86822793-86822812 None:intergenic 45.0%
TTTAATGTGACAGGGGAGAG+TGG + chr8_1:86822817-86822836 Msa1222580:intron 45.0%
!!! CCGATTTTGTTTTTTCGGGG+TGG + chr8_1:86823186-86823205 Msa1222580:intron 45.0%
GAGTAAGTATGCAAGTGAGC+AGG - chr8_1:86823369-86823388 None:intergenic 45.0%
CTCACTTGCATACTTACTCG+CGG + chr8_1:86823370-86823389 Msa1222580:intron 45.0%
! GATCAGCAGAAGAAAAGTGC+TGG + chr8_1:86823469-86823488 Msa1222580:CDS 45.0%
! AGCTAGTCGGATGGATTTGA+AGG + chr8_1:86823594-86823613 Msa1222580:intron 45.0%
AGGATGATCTAGGCTCCTTT+AGG - chr8_1:86823640-86823659 None:intergenic 45.0%
TTAGGAAACGACACACCAAG+AGG + chr8_1:86823979-86823998 Msa1222580:intron 45.0%
CATAGGAAGTGGCAAATGTC+GGG + chr8_1:86824033-86824052 Msa1222580:intron 45.0%
CTGTACGTTTGAAAGCTGCA+CGG + chr8_1:86824292-86824311 Msa1222580:CDS 45.0%
GGATCAATTGCTGCAGGTTA+AGG + chr8_1:86824416-86824435 Msa1222580:intron 45.0%
TCGACCAGAACATAGCAAAG+CGG - chr8_1:86824538-86824557 None:intergenic 45.0%
AGCTGAAGCAGATGAAGTCT+CGG + chr8_1:86824912-86824931 Msa1222580:CDS 45.0%
GTGGTTAATGGGATTCCTTC+AGG - chr8_1:86825128-86825147 None:intergenic 45.0%
CACAAGGCTGATTGATCATC+TGG + chr8_1:86825182-86825201 Msa1222580:three_prime_UTR 45.0%
!! TATAAAATGATTATATTATA+TGG + chr8_1:86822542-86822561 Msa1222580:intron 5.0%
GTGGGAAGGAAGAGTGAATG+AGG - chr8_1:86821363-86821382 None:intergenic 50.0%
CTCTCGACCTCTCCAAACTT+AGG + chr8_1:86821483-86821502 Msa1222580:CDS 50.0%
TTCCACTCTCTTTCCCCTGT+AGG + chr8_1:86822115-86822134 Msa1222580:intron 50.0%
TACCTACAGGGGAAAGAGAG+TGG - chr8_1:86822120-86822139 None:intergenic 50.0%
GTTGTGTGTGTGTGTGTGTG+TGG - chr8_1:86822259-86822278 None:intergenic 50.0%
GACACTCATTCACCGTTCAG+TGG + chr8_1:86822387-86822406 Msa1222580:intron 50.0%
! GAAAATTGGACCGGCTGGTT+TGG - chr8_1:86822621-86822640 None:intergenic 50.0%
ACAGGGGAGAGTGGTAGTAA+AGG + chr8_1:86822826-86822845 Msa1222580:intron 50.0%
GGGAGAGTGGTAGTAAAGGT+GGG + chr8_1:86822830-86822849 Msa1222580:intron 50.0%
! GGTAGTAAAGGTGGGAGCAT+TGG + chr8_1:86822838-86822857 Msa1222580:intron 50.0%
!! GATGCCGCTTTGCTATGTTC+TGG + chr8_1:86824531-86824550 Msa1222580:intron 50.0%
TCATGTGCAGCTTGCAACAG+AGG + chr8_1:86824801-86824820 Msa1222580:intron 50.0%
CATGCATCGGAGTTGAACCG+TGG + chr8_1:86821213-86821232 Msa1222580:five_prime_UTR 55.0%
GTGTAAACCAACGCCATGGC+TGG + chr8_1:86821239-86821258 Msa1222580:exon 55.0%
TTTAACGGGAACGACGGTGG+TGG - chr8_1:86821273-86821292 None:intergenic 55.0%
GAGTTTAACGGGAACGACGG+TGG - chr8_1:86821276-86821295 None:intergenic 55.0%
TAACGAACGGTTGCGTGGGA+AGG - chr8_1:86821377-86821396 None:intergenic 55.0%
TCCCACGCAACCGTTCGTTA+CGG + chr8_1:86821377-86821396 Msa1222580:CDS 55.0%
ACCGTAACGAACGGTTGCGT+GGG - chr8_1:86821381-86821400 None:intergenic 55.0%
! GCGTGTGTGGGTGCTATAAG+CGG - chr8_1:86821765-86821784 None:intergenic 55.0%
GGGGAGAGTGGTAGTAAAGG+TGG + chr8_1:86822829-86822848 Msa1222580:intron 55.0%
TGTGCAGCTTGCAACAGAGG+AGG + chr8_1:86824804-86824823 Msa1222580:intron 55.0%
GGTAATGCCAGCCATGGCGT+TGG - chr8_1:86821249-86821268 None:intergenic 60.0%
! GGTGGTGGTAATGCCAGCCA+TGG - chr8_1:86821255-86821274 None:intergenic 60.0%
CACCGTAACGAACGGTTGCG+TGG - chr8_1:86821382-86821401 None:intergenic 60.0%
AACCTCCGTCCTTCCGCCTA+CGG + chr8_1:86821404-86821423 Msa1222580:CDS 60.0%
GTGTGTGTGTGCGCGTGTGT+GGG - chr8_1:86821777-86821796 None:intergenic 60.0%
TGTGTGTGTGTGCGCGTGTG+TGG - chr8_1:86821778-86821797 None:intergenic 60.0%
! TGGTTTGGGAGCCAGTCAGG+AGG - chr8_1:86822606-86822625 None:intergenic 60.0%
! TGACTGGCTCCCAAACCAGC+CGG + chr8_1:86822608-86822627 Msa1222580:intron 60.0%
CAAGCTGCACATGACCCGTG+TGG - chr8_1:86824795-86824814 None:intergenic 60.0%
! AACGGGAACGACGGTGGTGG+TGG - chr8_1:86821270-86821289 None:intergenic 65.0%
GAAGTTGCCACCGCCACCGT+AGG - chr8_1:86821423-86821442 None:intergenic 65.0%
!! GGCTGGTTTGGGAGCCAGTC+AGG - chr8_1:86822609-86822628 None:intergenic 65.0%
CACCGTAGGCGGAAGGACGG+AGG - chr8_1:86821409-86821428 None:intergenic 70.0%
CTCCGTCCTTCCGCCTACGG+TGG + chr8_1:86821407-86821426 Msa1222580:CDS 70.0%
CGCCACCGTAGGCGGAAGGA+CGG - chr8_1:86821412-86821431 None:intergenic 70.0%
CGTCCTTCCGCCTACGGTGG+CGG + chr8_1:86821410-86821429 Msa1222580:CDS 70.0%
GTTGCCACCGCCACCGTAGG+CGG - chr8_1:86821420-86821439 None:intergenic 70.0%
CCACCGCCACCGTAGGCGGA+AGG - chr8_1:86821416-86821435 None:intergenic 75.0%
! CCTTCCGCCTACGGTGGCGG+TGG + chr8_1:86821413-86821432 Msa1222580:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86821105 86825345 86821105 ID=Msa1222580;Name=Msa1222580
chr8_1 mRNA 86821105 86825345 86821105 ID=Msa1222580-mRNA-1;Parent=Msa1222580;Name=Msa1222580-mRNA-1;_AED=0.20;_eAED=0.20;_QI=149|0.85|0.87|1|0.85|0.87|8|394|249
chr8_1 exon 86821105 86821504 86821105 ID=Msa1222580-mRNA-1:exon:31290;Parent=Msa1222580-mRNA-1
chr8_1 exon 86821597 86821645 86821597 ID=Msa1222580-mRNA-1:exon:31291;Parent=Msa1222580-mRNA-1
chr8_1 exon 86822137 86822189 86822137 ID=Msa1222580-mRNA-1:exon:31292;Parent=Msa1222580-mRNA-1
chr8_1 exon 86823435 86823490 86823435 ID=Msa1222580-mRNA-1:exon:31293;Parent=Msa1222580-mRNA-1
chr8_1 exon 86823596 86823629 86823596 ID=Msa1222580-mRNA-1:exon:31294;Parent=Msa1222580-mRNA-1
chr8_1 exon 86824266 86824338 86824266 ID=Msa1222580-mRNA-1:exon:31295;Parent=Msa1222580-mRNA-1
chr8_1 exon 86824432 86824524 86824432 ID=Msa1222580-mRNA-1:exon:31296;Parent=Msa1222580-mRNA-1
chr8_1 exon 86824811 86825345 86824811 ID=Msa1222580-mRNA-1:exon:31297;Parent=Msa1222580-mRNA-1
chr8_1 five_prime_UTR 86821105 86821253 86821105 ID=Msa1222580-mRNA-1:five_prime_utr;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86821254 86821504 86821254 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86821597 86821645 86821597 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86822137 86822189 86822137 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86823435 86823490 86823435 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86823596 86823629 86823596 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86824266 86824338 86824266 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86824432 86824524 86824432 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 CDS 86824811 86824951 86824811 ID=Msa1222580-mRNA-1:cds;Parent=Msa1222580-mRNA-1
chr8_1 three_prime_UTR 86824952 86825345 86824952 ID=Msa1222580-mRNA-1:three_prime_utr;Parent=Msa1222580-mRNA-1
Gene Sequence

>Msa1222580

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTCTCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGGTCGAATACCGTTAGGCTTATTGATCAGAGTCAGAATATGGTTGGAGTAGTAATAGTATCTGCAGAGGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGCTAGTCGGATGGATTTGAAGGAGCTTAAAATGGGATACAATATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGCTTGCAACAGAGGAGGCTAAAAACTTCCGCGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGAAGCAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>Msa1222580

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLRSNTVRLIDQSQNMVGVVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAEADEVSVSVEA*