AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1430760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430760 MtrunA17_Chr4g0073731 89.098 266 12 1 1 249 1 266 7.27e-164 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430760 AT2G24060.1 50.741 270 94 5 1 237 1 264 2.44e-75 231
Msa1430760 AT4G30690.1 52.590 251 93 5 1 233 14 256 2.83e-74 228
Msa1430760 AT4G30690.2 45.418 251 83 5 1 233 14 228 1.44e-59 189

Find 78 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGCTTCAGCTTTCTT+TGG 0.232978 tig0026745:+31823 None:intergenic
GGATTTGAAGGAGCTTAAAA+TGG 0.251941 tig0026745:-33121 Msa1430760:CDS
GTGGTTAATGGGATTCCTTC+AGG 0.326287 tig0026745:+31602 None:intergenic
TTGTTAGAATAATGAATTAC+AGG 0.335848 tig0026745:-34559 Msa1430760:intron
TATTGATCAGAGTCAGAATA+TGG 0.349868 tig0026745:-35112 Msa1430760:CDS
TTAGAATACGTACCTAAGTT+TGG 0.359504 tig0026745:+35232 None:intergenic
AACAGAGCAATATCAGTTAC+AGG 0.362956 tig0026745:+31734 None:intergenic
CACAAGGCTGATTGATCATC+TGG 0.369737 tig0026745:-31545 Msa1430760:three_prime_UTR
TTGTCGAAGAGAGTGGTTAA+TGG 0.371981 tig0026745:+31590 None:intergenic
TCATCGTCAGCATCTTTGTT+AGG 0.382465 tig0026745:+35272 None:intergenic
TTCTAGAAGTTTAATTATAG+AGG 0.385592 tig0026745:-31651 Msa1430760:three_prime_UTR
CCAATGAAAATTTGAGGATT+GGG 0.386900 tig0026745:+35603 None:intergenic
TGTCGAAGAGAGTGGTTAAT+GGG 0.393354 tig0026745:+31591 None:intergenic
ACCAATGAAAATTTGAGGAT+TGG 0.404550 tig0026745:+35602 None:intergenic
TGCGAGGCTTTGAGTTTAAC+GGG 0.413405 tig0026745:+35443 None:intergenic
GATTTGAAGGAGCTTAAAAT+GGG 0.419531 tig0026745:-33120 Msa1430760:CDS
GAACAACCAATGAAAATTTG+AGG 0.421285 tig0026745:+35597 None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG 0.431987 tig0026745:+35442 None:intergenic
TAATTCATTATTCTAACAAC+AGG 0.442385 tig0026745:+34563 None:intergenic
AAGGTCATAGTAAACCTTAA+AGG 0.442796 tig0026745:-32292 Msa1430760:CDS
GCTTTCTTTGGTGTTTCTTG+AGG 0.453019 tig0026745:+31835 None:intergenic
AACGGGAACGACGGTGGTGG+TGG 0.470380 tig0026745:+35460 None:intergenic
TACGGGATTCTAGTTGTAGA+AGG 0.471523 tig0026745:-31762 Msa1430760:three_prime_UTR
GTGTAAACCAACGCCATGGC+TGG 0.473725 tig0026745:-35488 Msa1430760:exon
CGTCCTTCCGCCTACGGTGG+CGG 0.475627 tig0026745:-35317 Msa1430760:CDS
AACCTCCGTCCTTCCGCCTA+CGG 0.484697 tig0026745:-35323 Msa1430760:CDS
AGGGAGAAGATTGAAAATTG+AGG 0.492839 tig0026745:+35387 None:intergenic
GTGGGAAGGAAGAGTGAATG+AGG 0.494919 tig0026745:+35367 None:intergenic
AGCTAGTCGGATGGATTTGA+AGG 0.496946 tig0026745:-33133 Msa1430760:CDS
GGGAGAAGATTGAAAATTGA+GGG 0.497096 tig0026745:+35388 None:intergenic
GAAATAGGTCGAATACCGTT+AGG 0.499801 tig0026745:-35137 Msa1430760:intron
GCGTTGGTTTACACTTTCCA+CGG 0.503109 tig0026745:+35497 None:intergenic
GATTGAAAATTGAGGGAATG+AGG 0.509324 tig0026745:+35395 None:intergenic
CCTTCCGCCTACGGTGGCGG+TGG 0.531353 tig0026745:-35314 Msa1430760:CDS
TGGGAAGGAAGAGTGAATGA+GGG 0.537972 tig0026745:+35368 None:intergenic
GAAAATTTGAGGATTGGGCC+TGG 0.541739 tig0026745:+35608 None:intergenic
GATCAGCAGAAGAAAAGTGC+TGG 0.542127 tig0026745:-33258 Msa1430760:intron
CGCCACCGTAGGCGGAAGGA+CGG 0.545325 tig0026745:+35318 None:intergenic
TCGTCAGCATCTTTGTTAGG+AGG 0.545365 tig0026745:+35275 None:intergenic
TCCCACGCAACCGTTCGTTA+CGG 0.549673 tig0026745:-35350 Msa1430760:CDS
CATAGTTGAAAACTTCCATA+CGG 0.554407 tig0026745:-31780 Msa1430760:exon
AGCTGAAGCAGATGAAGTCT+CGG 0.555824 tig0026745:-31815 Msa1430760:CDS
TCAGCATCTTTGTTAGGAGG+AGG 0.559988 tig0026745:+35278 None:intergenic
CTCTCGACCTCTCCAAACTT+AGG 0.560626 tig0026745:-35244 Msa1430760:intron
TAACGAACGGTTGCGTGGGA+AGG 0.567710 tig0026745:+35353 None:intergenic
TTCATTATTCTAACAACAGG+AGG 0.568824 tig0026745:+34566 None:intergenic
GATCAGAGTCAGAATATGGT+TGG 0.572223 tig0026745:-35108 Msa1430760:CDS
TAACTGATATTGCTCTGTTG+TGG 0.573517 tig0026745:-31730 Msa1430760:three_prime_UTR
TTTGTGGGAATTTAATAACC+AGG 0.573535 tig0026745:-35626 None:intergenic
GAAGTTGCCACCGCCACCGT+AGG 0.573642 tig0026745:+35307 None:intergenic
ACCGTAACGAACGGTTGCGT+GGG 0.576730 tig0026745:+35349 None:intergenic
GTTGCCACCGCCACCGTAGG+CGG 0.587312 tig0026745:+35310 None:intergenic
ATTGAAACGCTGAAACCTGA+AGG 0.588692 tig0026745:-31617 Msa1430760:three_prime_UTR
ATAGTTGAAAACTTCCATAC+GGG 0.590817 tig0026745:-31779 Msa1430760:exon
TCATGTGCAGCTTGCAACAG+AGG 0.599439 tig0026745:-31926 Msa1430760:intron
GAATACATTGTCGAAGAGAG+TGG 0.599815 tig0026745:+31583 None:intergenic
CATAGAAGAACAACAGCACA+AGG 0.600188 tig0026745:-31561 Msa1430760:three_prime_UTR
TTTCAGCGTTTCAATAGACA+AGG 0.602016 tig0026745:+31625 None:intergenic
GGTAATGCCAGCCATGGCGT+TGG 0.603488 tig0026745:+35481 None:intergenic
GAGTTTAACGGGAACGACGG+TGG 0.603870 tig0026745:+35454 None:intergenic
CCACCGCCACCGTAGGCGGA+AGG 0.608125 tig0026745:+35314 None:intergenic
CACCGTAGGCGGAAGGACGG+AGG 0.610477 tig0026745:+35321 None:intergenic
TTTAACGGGAACGACGGTGG+TGG 0.617395 tig0026745:+35457 None:intergenic
GGTGGTGGTAATGCCAGCCA+TGG 0.622734 tig0026745:+35475 None:intergenic
TCTACAACTAGAATCCCGTA+TGG 0.633129 tig0026745:+31765 None:intergenic
TTTATTAGAGAATAGATGCG+AGG 0.635663 tig0026745:+35427 None:intergenic
TGTGCAGCTTGCAACAGAGG+AGG 0.648795 tig0026745:-31923 Msa1430760:intron
ATACTTACTAGAACATGCAT+CGG 0.651186 tig0026745:-35527 Msa1430760:five_prime_UTR
GAAAGTGTAAACCAACGCCA+TGG 0.651302 tig0026745:-35492 Msa1430760:exon
ACTCTGATCAATAAGCCTAA+CGG 0.652818 tig0026745:+35122 None:intergenic
GAGGTTAACACCGTAACGAA+CGG 0.655700 tig0026745:+35340 None:intergenic
ACAGAGCAATATCAGTTACA+GGG 0.664630 tig0026745:+31735 None:intergenic
TTTGAGTTTAACGGGAACGA+CGG 0.669820 tig0026745:+35451 None:intergenic
CTGTACGTTTGAAAGCTGCA+CGG 0.670288 tig0026745:-32435 Msa1430760:CDS
ATTTGAAGGAGCTTAAAATG+GGG 0.674873 tig0026745:-33119 Msa1430760:intron
GTAGGTAATAGTATCTGCAG+AGG 0.675285 tig0026745:-34594 Msa1430760:intron
ATACGTACCTAAGTTTGGAG+AGG 0.687696 tig0026745:+35237 None:intergenic
CATGCATCGGAGTTGAACCG+TGG 0.702183 tig0026745:-35514 Msa1430760:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTAAATGATATAA+AGG + tig0026745:33824-33843 None:intergenic 10.0%
!! TGTAAAGTTTAATATATTTC+AGG + tig0026745:32509-32528 None:intergenic 15.0%
!! AATGATTATATTATATGGTT+TGG - tig0026745:32846-32865 Msa1430760:intron 15.0%
!! TGTAAAAGAAGAAAAATATA+AGG + tig0026745:33713-33732 None:intergenic 15.0%
!!! AGAAATATTGATGATTAAAT+TGG + tig0026745:34055-34074 None:intergenic 15.0%
!!! TAATCATCAATATTTCTATA+AGG - tig0026745:34058-34077 Msa1430760:intron 15.0%
!!! AATCATCAATATTTCTATAA+GGG - tig0026745:34059-34078 Msa1430760:intron 15.0%
!! AAAAATTAACAAGTAAAGAT+AGG + tig0026745:34167-34186 None:intergenic 15.0%
!!! ATTTTGTTTATTGTTTTGTT+TGG - tig0026745:34529-34548 Msa1430760:intron 15.0%
!! GTAAATGATTTAAATAGAAA+AGG + tig0026745:34974-34993 None:intergenic 15.0%
!!! ATATCTTATTTTATTATCAC+TGG - tig0026745:35027-35046 Msa1430760:intron 15.0%
!! TTTAGATATAAAATACACTT+AGG + tig0026745:35071-35090 None:intergenic 15.0%
!! ACAAAAATTCGAAATAGAAA+TGG + tig0026745:31843-31862 None:intergenic 20.0%
!!! TTACTTTCGATTTTTGAAAT+AGG - tig0026745:31874-31893 Msa1430760:CDS 20.0%
!! TAATTCATTATTCTAACAAC+AGG + tig0026745:32466-32485 None:intergenic 20.0%
!! TTGTTAGAATAATGAATTAC+AGG - tig0026745:32467-32486 Msa1430760:intron 20.0%
!! AAGTTTAATATATTTCAGGA+CGG + tig0026745:32505-32524 None:intergenic 20.0%
!! ATATAGTATAAAAAAACCAG+TGG - tig0026745:32606-32625 Msa1430760:intron 20.0%
!!! AAAGCAATGCTTTTAAAAAT+CGG - tig0026745:32642-32661 Msa1430760:intron 20.0%
!!! ATTATATTATATGGTTTGGA+TGG - tig0026745:32850-32869 Msa1430760:intron 20.0%
!! TATACCAATGTTATGAAAAT+TGG + tig0026745:32934-32953 None:intergenic 20.0%
!!! ATTTTCATAACATTGGTATA+AGG - tig0026745:32934-32953 Msa1430760:intron 20.0%
!!! TTATTTCGAATGTTCATTTT+TGG - tig0026745:32982-33001 Msa1430760:intron 20.0%
!!! AAATGGATAACTCAATTTTT+AGG - tig0026745:33190-33209 Msa1430760:intron 20.0%
!!! AATGGATAACTCAATTTTTA+GGG - tig0026745:33191-33210 Msa1430760:intron 20.0%
!!! TGTTATTTTTGTAAGTCTTT+AGG - tig0026745:33217-33236 Msa1430760:intron 20.0%
!! ACCATCTTAATCTTAAAAAA+CGG + tig0026745:33253-33272 None:intergenic 20.0%
!!! ATTTACAATTTTACAGAACT+CGG - tig0026745:33831-33850 Msa1430760:intron 20.0%
!!! TTTTCTATGAAACATAAGAA+AGG + tig0026745:33959-33978 None:intergenic 20.0%
!!! TATTTTATATCTAAACCACA+CGG - tig0026745:35076-35095 Msa1430760:intron 20.0%
!!! TTCTAGAAGTTTAATTATAG+AGG - tig0026745:35375-35394 Msa1430760:CDS 20.0%
!! AAAAATGAAATGAAATTCGA+AGG + tig0026745:35549-35568 None:intergenic 20.0%
! AATTCGAAATAGAAATGGAA+TGG + tig0026745:31838-31857 None:intergenic 25.0%
!!! GCTGTTTTAATAAGATATCT+TGG - tig0026745:32191-32210 Msa1430760:intron 25.0%
! GATAGACAATTATCCAAATT+TGG - tig0026745:33043-33062 Msa1430760:intron 25.0%
! TGTCTTGAATGTTGTTAATT+TGG - tig0026745:33431-33450 Msa1430760:intron 25.0%
!! TTGAATGTTGTTAATTTGGA+TGG - tig0026745:33435-33454 Msa1430760:intron 25.0%
!!! TCATTCCGATTTTGTTTTTT+CGG - tig0026745:33480-33499 Msa1430760:intron 25.0%
! AGCTACATTAAAAAGATCAT+TGG + tig0026745:33877-33896 None:intergenic 25.0%
!! ATCTTTTTAATGTAGCTAGT+CGG - tig0026745:33880-33899 Msa1430760:intron 25.0%
! ATATCTGAATTCTTGTTCTT+TGG - tig0026745:33994-34013 Msa1430760:intron 25.0%
! TTCTGTCAAGATATAAATGA+TGG + tig0026745:34362-34381 None:intergenic 25.0%
! AGATATAAAATACACTTAGG+CGG + tig0026745:35068-35087 None:intergenic 25.0%
!! ATTTTATATCTAAACCACAC+GGG - tig0026745:35077-35096 Msa1430760:intron 25.0%
CCAATGAAAATTTGAGGATT+GGG + tig0026745:31426-31445 None:intergenic 30.0%
ACCAATGAAAATTTGAGGAT+TGG + tig0026745:31427-31446 None:intergenic 30.0%
GAACAACCAATGAAAATTTG+AGG + tig0026745:31432-31451 None:intergenic 30.0%
ATACTTACTAGAACATGCAT+CGG - tig0026745:31499-31518 Msa1430760:three_prime_UTR 30.0%
TTTATTAGAGAATAGATGCG+AGG + tig0026745:31602-31621 None:intergenic 30.0%
TTAGAATACGTACCTAAGTT+TGG + tig0026745:31797-31816 None:intergenic 30.0%
GAAATAGAAATGGAATGGAA+TGG + tig0026745:31833-31852 None:intergenic 30.0%
TATTGATCAGAGTCAGAATA+TGG - tig0026745:31914-31933 Msa1430760:CDS 30.0%
TTGACTCAGTTCTATCATAT+AGG - tig0026745:32010-32029 Msa1430760:intron 30.0%
TCTATCATATAGGCATGATT+TGG - tig0026745:32020-32039 Msa1430760:intron 30.0%
!! TGAACTGATTTGAAACAGTT+GGG + tig0026745:32309-32328 None:intergenic 30.0%
CATAAGTAATATGTGCTCAA+AGG + tig0026745:32365-32384 None:intergenic 30.0%
TTCATTATTCTAACAACAGG+AGG + tig0026745:32463-32482 None:intergenic 30.0%
ATAAAAAAACCAGTGGTTGA+TGG - tig0026745:32613-32632 Msa1430760:intron 30.0%
CAATGTTATGAAAATTGGAC+CGG + tig0026745:32929-32948 None:intergenic 30.0%
TTCATAACATTGGTATAAGG+TGG - tig0026745:32937-32956 Msa1430760:intron 30.0%
!! GTTCCAATTTTAATGTGACA+GGG - tig0026745:33108-33127 Msa1430760:intron 30.0%
!! TTCCAATTTTAATGTGACAG+GGG - tig0026745:33109-33128 Msa1430760:intron 30.0%
TAAATATCTGCAGTGTGAAA+TGG - tig0026745:33173-33192 Msa1430760:intron 30.0%
!!! GCCGTTTTTTAAGATTAAGA+TGG - tig0026745:33249-33268 Msa1430760:intron 30.0%
TAAGAGCAAGAAAAAAAGAC+AGG + tig0026745:33360-33379 None:intergenic 30.0%
! ATGTTGTTAATTTGGATGGT+AGG - tig0026745:33439-33458 Msa1430760:intron 30.0%
!!! CATTCCGATTTTGTTTTTTC+GGG - tig0026745:33481-33500 Msa1430760:intron 30.0%
!!! ATTCCGATTTTGTTTTTTCG+GGG - tig0026745:33482-33501 Msa1430760:intron 30.0%
TTTCATGAAACAACGTGTTT+GGG + tig0026745:33565-33584 None:intergenic 30.0%
TTGTGTTAAGTGAAAGTCAA+AGG + tig0026745:33597-33616 None:intergenic 30.0%
! CTGGTAAGCATTGTATTTAT+TGG - tig0026745:33787-33806 Msa1430760:intron 30.0%
GATTTGAAGGAGCTTAAAAT+GGG - tig0026745:33906-33925 Msa1430760:intron 30.0%
ATTTGAAGGAGCTTAAAATG+GGG - tig0026745:33907-33926 Msa1430760:intron 30.0%
AAAATGGGGTAATATCCTAA+AGG - tig0026745:33921-33940 Msa1430760:intron 30.0%
AACATAAGAAAGGATGATCT+AGG + tig0026745:33949-33968 None:intergenic 30.0%
TTATTGCCGTACATTCTTAT+GGG - tig0026745:34109-34128 Msa1430760:intron 30.0%
TATGTTTATCTTTGAGCAGT+AGG + tig0026745:34316-34335 None:intergenic 30.0%
TACTGCTCAAAGATAAACAT+AGG - tig0026745:34315-34334 Msa1430760:intron 30.0%
TCAAAGATAAACATAGGAAG+TGG - tig0026745:34321-34340 Msa1430760:intron 30.0%
TTAAAGCATAAACCTTGTCT+TGG - tig0026745:34392-34411 Msa1430760:intron 30.0%
TAAAGCATAAACCTTGTCTT+GGG - tig0026745:34393-34412 Msa1430760:intron 30.0%
AAGAAAAATAACCCAAGACA+AGG + tig0026745:34407-34426 None:intergenic 30.0%
!! TAAAAAGTAAACTCTGGAAC+TGG + tig0026745:34453-34472 None:intergenic 30.0%
GGTTCATAAAAAGTAAACTC+TGG + tig0026745:34459-34478 None:intergenic 30.0%
!! ATTTTTGAATGATGGTGACA+AGG - tig0026745:34616-34635 Msa1430760:intron 30.0%
! TCAAGTGTATTCAGATCTTT+TGG - tig0026745:34694-34713 Msa1430760:intron 30.0%
AAGGTCATAGTAAACCTTAA+AGG - tig0026745:34734-34753 Msa1430760:intron 30.0%
!! ATTCTTTTTCACGACCTTTA+AGG + tig0026745:34751-34770 None:intergenic 30.0%
AGCATTTGTACCAAAAAAGA+AGG - tig0026745:34875-34894 Msa1430760:intron 30.0%
AAAATAAGATATCAGCAGAG+TGG + tig0026745:35019-35038 None:intergenic 30.0%
!! TTATGAAGATGTTTTTGTCG+CGG + tig0026745:35139-35158 None:intergenic 30.0%
!!! TTCTGCACTTCAGTTTTATT+TGG + tig0026745:35170-35189 None:intergenic 30.0%
CATAGTTGAAAACTTCCATA+CGG - tig0026745:35246-35265 Msa1430760:CDS 30.0%
ATAGTTGAAAACTTCCATAC+GGG - tig0026745:35247-35266 Msa1430760:CDS 30.0%
! CCCAATCCTCAAATTTTCAT+TGG - tig0026745:31423-31442 Msa1430760:three_prime_UTR 35.0%
GATTGAAAATTGAGGGAATG+AGG + tig0026745:31634-31653 None:intergenic 35.0%
GGGAGAAGATTGAAAATTGA+GGG + tig0026745:31641-31660 None:intergenic 35.0%
AGGGAGAAGATTGAAAATTG+AGG + tig0026745:31642-31661 None:intergenic 35.0%
ACTCTGATCAATAAGCCTAA+CGG + tig0026745:31907-31926 None:intergenic 35.0%
TGAAGATGCTGAACTTGATT+TGG - tig0026745:31974-31993 Msa1430760:intron 35.0%
! TAATGAGTATTGCGAATGCA+AGG - tig0026745:32245-32264 Msa1430760:CDS 35.0%
! AATGAGTATTGCGAATGCAA+GGG - tig0026745:32246-32265 Msa1430760:CDS 35.0%
!! GGATTGATTGAGCTATTTCT+AGG - tig0026745:32267-32286 Msa1430760:CDS 35.0%
!! GTGAACTGATTTGAAACAGT+TGG + tig0026745:32310-32329 None:intergenic 35.0%
AATATGTGCTCAAAGGTCAA+TGG + tig0026745:32358-32377 None:intergenic 35.0%
ATGACATGACACAATTGCAT+AGG - tig0026745:32382-32401 Msa1430760:intron 35.0%
TGCAGATACTATTACCTACA+GGG + tig0026745:32431-32450 None:intergenic 35.0%
GCTAGACAATGATACAACTA+AGG + tig0026745:32717-32736 None:intergenic 35.0%
!!! GGTTTGGATGGTTAGTTTTT+TGG - tig0026745:32862-32881 Msa1430760:intron 35.0%
! CGGTCCAATTTTCATAACAT+TGG - tig0026745:32927-32946 Msa1430760:intron 35.0%
ACTTGTGGCTACTTAATGAT+TGG + tig0026745:33011-33030 None:intergenic 35.0%
ATCATTAAGTAGCCACAAGT+AGG - tig0026745:33011-33030 Msa1430760:intron 35.0%
GAAACGCTATACACCAAATT+TGG + tig0026745:33059-33078 None:intergenic 35.0%
!! GGTTCCAATTTTAATGTGAC+AGG - tig0026745:33107-33126 Msa1430760:intron 35.0%
CTTTCATGAAACAACGTGTT+TGG + tig0026745:33566-33585 None:intergenic 35.0%
ACACAATCAGAAGAATCTCT+TGG - tig0026745:33611-33630 Msa1430760:intron 35.0%
AATCAGAAGAATCTCTTGGT+GGG - tig0026745:33615-33634 Msa1430760:intron 35.0%
! TTTTAATGTAGCTAGTCGGA+TGG - tig0026745:33884-33903 Msa1430760:intron 35.0%
GGATTTGAAGGAGCTTAAAA+TGG - tig0026745:33905-33924 Msa1430760:intron 35.0%
AGAATGGGTCAAATCTGATT+AGG + tig0026745:34022-34041 None:intergenic 35.0%
AATCAGATTTGACCCATTCT+TGG - tig0026745:34022-34041 Msa1430760:intron 35.0%
ATTTGACCCATTCTTGGTTA+TGG - tig0026745:34028-34047 Msa1430760:intron 35.0%
ATTGGTCCATAACCAAGAAT+GGG + tig0026745:34037-34056 None:intergenic 35.0%
AATTGGTCCATAACCAAGAA+TGG + tig0026745:34038-34057 None:intergenic 35.0%
GTTATTGCCGTACATTCTTA+TGG - tig0026745:34108-34127 Msa1430760:intron 35.0%
TATTGCCGTACATTCTTATG+GGG - tig0026745:34110-34129 Msa1430760:intron 35.0%
GTAAACCCCATAAGAATGTA+CGG + tig0026745:34118-34137 None:intergenic 35.0%
TTACTCTATGTTCTCTTGGA+AGG - tig0026745:34134-34153 Msa1430760:intron 35.0%
! ATTGTTCACAACTTGCTTCT+TGG - tig0026745:34237-34256 Msa1430760:intron 35.0%
TTGCTTCTTGGTTATGAACT+TGG - tig0026745:34249-34268 Msa1430760:intron 35.0%
TGCTTCTTGGTTATGAACTT+GGG - tig0026745:34250-34269 Msa1430760:intron 35.0%
TTATGAACTTGGGTTCAGTT+AGG - tig0026745:34260-34279 Msa1430760:intron 35.0%
AGGATTAAACAAACTCCTCT+TGG + tig0026745:34296-34315 None:intergenic 35.0%
! GCACGGAAATTTTTGAATGA+TGG - tig0026745:34608-34627 Msa1430760:intron 35.0%
AAGGTCGTGAAAAAGAATTC+AGG - tig0026745:34753-34772 Msa1430760:intron 35.0%
ACAGAGCAATATCAGTTACA+GGG + tig0026745:35294-35313 None:intergenic 35.0%
AACAGAGCAATATCAGTTAC+AGG + tig0026745:35295-35314 None:intergenic 35.0%
TAACTGATATTGCTCTGTTG+TGG - tig0026745:35296-35315 Msa1430760:CDS 35.0%
TTTCAGCGTTTCAATAGACA+AGG + tig0026745:35404-35423 None:intergenic 35.0%
! TTTGAGTTTAACGGGAACGA+CGG + tig0026745:31578-31597 None:intergenic 40.0%
!! ATGCGAGGCTTTGAGTTTAA+CGG + tig0026745:31587-31606 None:intergenic 40.0%
TCATCGTCAGCATCTTTGTT+AGG + tig0026745:31757-31776 None:intergenic 40.0%
ATACGTACCTAAGTTTGGAG+AGG + tig0026745:31792-31811 None:intergenic 40.0%
GAAATAGGTCGAATACCGTT+AGG - tig0026745:31889-31908 Msa1430760:CDS 40.0%
GATCAGAGTCAGAATATGGT+TGG - tig0026745:31918-31937 Msa1430760:CDS 40.0%
TGGAGTAGTATCTCTTGATC+AGG - tig0026745:31938-31957 Msa1430760:intron 40.0%
TCTTGATCAGGCAATTCGAA+TGG - tig0026745:31950-31969 Msa1430760:intron 40.0%
GCAGATACTATTACCTACAG+GGG + tig0026745:32430-32449 None:intergenic 40.0%
CTGCAGATACTATTACCTAC+AGG + tig0026745:32432-32451 None:intergenic 40.0%
GTAGGTAATAGTATCTGCAG+AGG - tig0026745:32432-32451 Msa1430760:CDS 40.0%
TTTGTAATGCCATCAACCAC+TGG + tig0026745:32625-32644 None:intergenic 40.0%
! AATCGGTTCAGTCATTGAAC+TGG - tig0026745:32659-32678 Msa1430760:intron 40.0%
ACTAAGGTTGAACCACTGAA+CGG + tig0026745:32701-32720 None:intergenic 40.0%
TGGTATAAGGTGGTCATGTA+AGG - tig0026745:32947-32966 Msa1430760:intron 40.0%
AGTAGCCACAAGTAGGTTAT+AGG - tig0026745:33018-33037 Msa1430760:intron 40.0%
ATCGTCCTATAACCTACTTG+TGG + tig0026745:33026-33045 None:intergenic 40.0%
!! TCTAGCCTTATGCAACTACT+TGG - tig0026745:33084-33103 Msa1430760:intron 40.0%
!! CTAGCCTTATGCAACTACTT+GGG - tig0026745:33085-33104 Msa1430760:intron 40.0%
!! TAGCCTTATGCAACTACTTG+GGG - tig0026745:33086-33105 Msa1430760:intron 40.0%
CTCCCCTGTCACATTAAAAT+TGG + tig0026745:33114-33133 None:intergenic 40.0%
CCACCCCGAAAAAACAAAAT+CGG + tig0026745:33488-33507 None:intergenic 40.0%
!!! CGATTTTGTTTTTTCGGGGT+GGG - tig0026745:33486-33505 Msa1430760:intron 40.0%
!!! GATTTTGTTTTTTCGGGGTG+GGG - tig0026745:33487-33506 Msa1430760:intron 40.0%
CAATCAGAAGAATCTCTTGG+TGG - tig0026745:33614-33633 Msa1430760:intron 40.0%
ATCAGAAGAATCTCTTGGTG+GGG - tig0026745:33616-33635 Msa1430760:intron 40.0%
!! ATAAGGAACGCTGACTTTCA+AGG + tig0026745:33696-33715 None:intergenic 40.0%
GGGTTTACTCTATGTTCTCT+TGG - tig0026745:34130-34149 Msa1430760:intron 40.0%
ACATAGGAAGTGGCAAATGT+CGG - tig0026745:34331-34350 Msa1430760:intron 40.0%
CTACAACTCAAAACTAACGC+TGG + tig0026745:34480-34499 None:intergenic 40.0%
! TCTTTTGGATCAATTGCTGC+AGG - tig0026745:34709-34728 Msa1430760:intron 40.0%
! AGACGTTTTCAGAACGATGT+TGG - tig0026745:34797-34816 Msa1430760:intron 40.0%
! GACGTTTTCAGAACGATGTT+GGG - tig0026745:34798-34817 Msa1430760:intron 40.0%
! TTTTCAGAACGATGTTGGGA+AGG - tig0026745:34802-34821 Msa1430760:intron 40.0%
!!! CGTCATAGGACCTTCTTTTT+TGG + tig0026745:34888-34907 None:intergenic 40.0%
GTATCTGTAAAGCACGTCAT+AGG + tig0026745:34902-34921 None:intergenic 40.0%
GTGCTTTACAGATACTCTCT+TGG - tig0026745:34907-34926 Msa1430760:intron 40.0%
!! GCTTTCTTTGGTGTTTCTTG+AGG + tig0026745:35194-35213 None:intergenic 40.0%
TCATCTGCTTCAGCTTTCTT+TGG + tig0026745:35206-35225 None:intergenic 40.0%
TCTACAACTAGAATCCCGTA+TGG + tig0026745:35264-35283 None:intergenic 40.0%
! TACGGGATTCTAGTTGTAGA+AGG - tig0026745:35264-35283 Msa1430760:CDS 40.0%
ATTGAAACGCTGAAACCTGA+AGG - tig0026745:35409-35428 Msa1430760:CDS 40.0%
TGTCGAAGAGAGTGGTTAAT+GGG + tig0026745:35438-35457 None:intergenic 40.0%
TTGTCGAAGAGAGTGGTTAA+TGG + tig0026745:35439-35458 None:intergenic 40.0%
GAATACATTGTCGAAGAGAG+TGG + tig0026745:35446-35465 None:intergenic 40.0%
CATAGAAGAACAACAGCACA+AGG - tig0026745:35465-35484 Msa1430760:CDS 40.0%
GAAAATTTGAGGATTGGGCC+TGG + tig0026745:31421-31440 None:intergenic 45.0%
!! GCGTTGGTTTACACTTTCCA+CGG + tig0026745:31532-31551 None:intergenic 45.0%
! GAAAGTGTAAACCAACGCCA+TGG - tig0026745:31534-31553 Msa1430760:three_prime_UTR 45.0%
!! TGCGAGGCTTTGAGTTTAAC+GGG + tig0026745:31586-31605 None:intergenic 45.0%
TGGGAAGGAAGAGTGAATGA+GGG + tig0026745:31661-31680 None:intergenic 45.0%
GAGGTTAACACCGTAACGAA+CGG + tig0026745:31689-31708 None:intergenic 45.0%
TCAGCATCTTTGTTAGGAGG+AGG + tig0026745:31751-31770 None:intergenic 45.0%
TCGTCAGCATCTTTGTTAGG+AGG + tig0026745:31754-31773 None:intergenic 45.0%
TTGATTAGACTCCTCCTGAC+TGG - tig0026745:32891-32910 Msa1430760:intron 45.0%
!! AAAATTGGACCGGCTGGTTT+GGG + tig0026745:32919-32938 None:intergenic 45.0%
GTTATGAAAATTGGACCGGC+TGG + tig0026745:32925-32944 None:intergenic 45.0%
GAACCCCAAGTAGTTGCATA+AGG + tig0026745:33092-33111 None:intergenic 45.0%
TTTAATGTGACAGGGGAGAG+TGG - tig0026745:33116-33135 Msa1430760:intron 45.0%
!!! CCGATTTTGTTTTTTCGGGG+TGG - tig0026745:33485-33504 Msa1430760:intron 45.0%
GAGTAAGTATGCAAGTGAGC+AGG + tig0026745:33668-33687 None:intergenic 45.0%
CTCACTTGCATACTTACTCG+CGG - tig0026745:33669-33688 Msa1430760:intron 45.0%
! GATCAGCAGAAGAAAAGTGC+TGG - tig0026745:33768-33787 Msa1430760:intron 45.0%
! AGCTAGTCGGATGGATTTGA+AGG - tig0026745:33893-33912 Msa1430760:intron 45.0%
AGGATGATCTAGGCTCCTTT+AGG + tig0026745:33939-33958 None:intergenic 45.0%
TTAGGAAACGACACACCAAG+AGG - tig0026745:34278-34297 Msa1430760:intron 45.0%
CATAGGAAGTGGCAAATGTC+GGG - tig0026745:34332-34351 Msa1430760:intron 45.0%
CTGTACGTTTGAAAGCTGCA+CGG - tig0026745:34591-34610 Msa1430760:CDS 45.0%
GGATCAATTGCTGCAGGTTA+AGG - tig0026745:34715-34734 Msa1430760:intron 45.0%
TCGACCAGAACATAGCAAAG+CGG + tig0026745:34837-34856 None:intergenic 45.0%
AGCTGAAGCAGATGAAGTCT+CGG - tig0026745:35211-35230 Msa1430760:intron 45.0%
GTGGTTAATGGGATTCCTTC+AGG + tig0026745:35427-35446 None:intergenic 45.0%
CACAAGGCTGATTGATCATC+TGG - tig0026745:35481-35500 Msa1430760:exon 45.0%
!! TATAAAATGATTATATTATA+TGG - tig0026745:32841-32860 Msa1430760:intron 5.0%
GTGGGAAGGAAGAGTGAATG+AGG + tig0026745:31662-31681 None:intergenic 50.0%
CTCTCGACCTCTCCAAACTT+AGG - tig0026745:31782-31801 Msa1430760:exon 50.0%
TTCCACTCTCTTTCCCCTGT+AGG - tig0026745:32414-32433 Msa1430760:CDS 50.0%
TACCTACAGGGGAAAGAGAG+TGG + tig0026745:32419-32438 None:intergenic 50.0%
GTTGTGTGTGTGTGTGTGTG+TGG + tig0026745:32558-32577 None:intergenic 50.0%
GACACTCATTCACCGTTCAG+TGG - tig0026745:32686-32705 Msa1430760:intron 50.0%
! GAAAATTGGACCGGCTGGTT+TGG + tig0026745:32920-32939 None:intergenic 50.0%
ACAGGGGAGAGTGGTAGTAA+AGG - tig0026745:33125-33144 Msa1430760:CDS 50.0%
GGGAGAGTGGTAGTAAAGGT+GGG - tig0026745:33129-33148 Msa1430760:CDS 50.0%
! GGTAGTAAAGGTGGGAGCAT+TGG - tig0026745:33137-33156 Msa1430760:intron 50.0%
!! GATGCCGCTTTGCTATGTTC+TGG - tig0026745:34830-34849 Msa1430760:intron 50.0%
TCATGTGCAGCTTGCAACAG+AGG - tig0026745:35100-35119 Msa1430760:intron 50.0%
CATGCATCGGAGTTGAACCG+TGG - tig0026745:31512-31531 Msa1430760:three_prime_UTR 55.0%
GTGTAAACCAACGCCATGGC+TGG - tig0026745:31538-31557 Msa1430760:three_prime_UTR 55.0%
TTTAACGGGAACGACGGTGG+TGG + tig0026745:31572-31591 None:intergenic 55.0%
GAGTTTAACGGGAACGACGG+TGG + tig0026745:31575-31594 None:intergenic 55.0%
TAACGAACGGTTGCGTGGGA+AGG + tig0026745:31676-31695 None:intergenic 55.0%
TCCCACGCAACCGTTCGTTA+CGG - tig0026745:31676-31695 Msa1430760:three_prime_UTR 55.0%
ACCGTAACGAACGGTTGCGT+GGG + tig0026745:31680-31699 None:intergenic 55.0%
! GCGTGTGTGGGTGCTATAAG+CGG + tig0026745:32064-32083 None:intergenic 55.0%
GGGGAGAGTGGTAGTAAAGG+TGG - tig0026745:33128-33147 Msa1430760:CDS 55.0%
TGTGCAGCTTGCAACAGAGG+AGG - tig0026745:35103-35122 Msa1430760:intron 55.0%
GGTAATGCCAGCCATGGCGT+TGG + tig0026745:31548-31567 None:intergenic 60.0%
! GGTGGTGGTAATGCCAGCCA+TGG + tig0026745:31554-31573 None:intergenic 60.0%
CACCGTAACGAACGGTTGCG+TGG + tig0026745:31681-31700 None:intergenic 60.0%
AACCTCCGTCCTTCCGCCTA+CGG - tig0026745:31703-31722 Msa1430760:three_prime_UTR 60.0%
GTGTGTGTGTGCGCGTGTGT+GGG + tig0026745:32076-32095 None:intergenic 60.0%
TGTGTGTGTGTGCGCGTGTG+TGG + tig0026745:32077-32096 None:intergenic 60.0%
! TGGTTTGGGAGCCAGTCAGG+AGG + tig0026745:32905-32924 None:intergenic 60.0%
! TGACTGGCTCCCAAACCAGC+CGG - tig0026745:32907-32926 Msa1430760:intron 60.0%
CAAGCTGCACATGACCCGTG+TGG + tig0026745:35094-35113 None:intergenic 60.0%
! AACGGGAACGACGGTGGTGG+TGG + tig0026745:31569-31588 None:intergenic 65.0%
GAAGTTGCCACCGCCACCGT+AGG + tig0026745:31722-31741 None:intergenic 65.0%
!! GGCTGGTTTGGGAGCCAGTC+AGG + tig0026745:32908-32927 None:intergenic 65.0%
CACCGTAGGCGGAAGGACGG+AGG + tig0026745:31708-31727 None:intergenic 70.0%
CTCCGTCCTTCCGCCTACGG+TGG - tig0026745:31706-31725 Msa1430760:three_prime_UTR 70.0%
CGCCACCGTAGGCGGAAGGA+CGG + tig0026745:31711-31730 None:intergenic 70.0%
CGTCCTTCCGCCTACGGTGG+CGG - tig0026745:31709-31728 Msa1430760:three_prime_UTR 70.0%
GTTGCCACCGCCACCGTAGG+CGG + tig0026745:31719-31738 None:intergenic 70.0%
CCACCGCCACCGTAGGCGGA+AGG + tig0026745:31715-31734 None:intergenic 75.0%
! CCTTCCGCCTACGGTGGCGG+TGG - tig0026745:31712-31731 Msa1430760:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0026745 gene 31404 35644 31404 ID=Msa1430760;Name=Msa1430760
tig0026745 mRNA 31404 35644 31404 ID=Msa1430760-mRNA-1;Parent=Msa1430760;Name=Msa1430760-mRNA-1;_AED=0.20;_eAED=0.20;_QI=149|0.85|0.87|1|1|1|8|394|249
tig0026745 exon 31404 31938 31404 ID=Msa1430760-mRNA-1:exon:7217;Parent=Msa1430760-mRNA-1
tig0026745 exon 32225 32317 32225 ID=Msa1430760-mRNA-1:exon:7216;Parent=Msa1430760-mRNA-1
tig0026745 exon 32411 32483 32411 ID=Msa1430760-mRNA-1:exon:7215;Parent=Msa1430760-mRNA-1
tig0026745 exon 33120 33153 33120 ID=Msa1430760-mRNA-1:exon:7214;Parent=Msa1430760-mRNA-1
tig0026745 exon 33259 33314 33259 ID=Msa1430760-mRNA-1:exon:7213;Parent=Msa1430760-mRNA-1
tig0026745 exon 34560 34612 34560 ID=Msa1430760-mRNA-1:exon:7212;Parent=Msa1430760-mRNA-1
tig0026745 exon 35104 35152 35104 ID=Msa1430760-mRNA-1:exon:7211;Parent=Msa1430760-mRNA-1
tig0026745 exon 35245 35644 35245 ID=Msa1430760-mRNA-1:exon:7210;Parent=Msa1430760-mRNA-1
tig0026745 five_prime_UTR 35496 35644 35496 ID=Msa1430760-mRNA-1:five_prime_utr;Parent=Msa1430760-mRNA-1
tig0026745 CDS 35245 35495 35245 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 35104 35152 35104 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 34560 34612 34560 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 33259 33314 33259 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 33120 33153 33120 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 32411 32483 32411 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 32225 32317 32225 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 CDS 31798 31938 31798 ID=Msa1430760-mRNA-1:cds;Parent=Msa1430760-mRNA-1
tig0026745 three_prime_UTR 31404 31797 31404 ID=Msa1430760-mRNA-1:three_prime_utr;Parent=Msa1430760-mRNA-1
Gene Sequence

>Msa1430760

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTCTCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGGTCGAATACCGTTAGGCTTATTGATCAGAGTCAGAATATGGTTGGAGTAGTAATAGTATCTGCAGAGGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGCTAGTCGGATGGATTTGAAGGAGCTTAAAATGGGATACAATATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGCTTGCAACAGAGGAGGCTAAAAACTTCCGCGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGAAGCAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>Msa1430760

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLRSNTVRLIDQSQNMVGVVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAEADEVSVSVEA*