Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220160 | KAG6738966.1 | 53.659 | 287 | 87 | 8 | 1 | 245 | 1 | 283 | 1.98e-82 | 261 |
| Msa0220160 | KAG6738966.1 | 60.595 | 269 | 79 | 9 | 1 | 247 | 111 | 374 | 3.18e-88 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220160 | A0A835J2U8 | 48.276 | 319 | 89 | 9 | 1 | 247 | 1 | 315 | 2.84e-73 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029700 | Msa0220160 | 0.804357 | 2.246103e-49 | -8.615850e-47 |
| Msa0080020 | Msa0220160 | 0.805544 | 1.268175e-49 | -8.615850e-47 |
| Msa0110240 | Msa0220160 | 0.828650 | 7.988737e-55 | -8.615850e-47 |
| Msa0124960 | Msa0220160 | 0.811328 | 7.396239e-51 | -8.615850e-47 |
| Msa0154730 | Msa0220160 | 0.812369 | 4.390162e-51 | -8.615850e-47 |
| Msa0156530 | Msa0220160 | 0.805583 | 1.244793e-49 | -8.615850e-47 |
| Msa0220160 | Msa0220170 | 0.843162 | 1.659965e-58 | -8.615850e-47 |
| Msa0220160 | Msa0227790 | 0.841607 | 4.288353e-58 | -8.615850e-47 |
| Msa0220160 | Msa0261460 | 0.855285 | 6.990421e-62 | -8.615850e-47 |
| Msa0220160 | Msa0261480 | 0.853614 | 2.126386e-61 | -8.615850e-47 |
| Msa0220160 | Msa0384590 | 0.842322 | 2.775784e-58 | -8.615850e-47 |
| Msa0220160 | Msa0434370 | 0.800749 | 1.245604e-48 | -8.615850e-47 |
| Msa0220160 | Msa0434660 | 0.823571 | 1.289256e-53 | -8.615850e-47 |
| Msa0220160 | Msa0522540 | 0.834372 | 3.114011e-56 | -8.615850e-47 |
| Msa0220160 | Msa0936950 | 0.823629 | 1.249756e-53 | -8.615850e-47 |
| Msa0220160 | Msa1026970 | 0.811512 | 6.746909e-51 | -8.615850e-47 |
| Msa0220160 | Msa1197720 | 0.804092 | 2.549866e-49 | -8.615850e-47 |
| Msa0220160 | Msa1251410 | 0.808858 | 2.518812e-50 | -8.615850e-47 |
| Msa0220160 | Msa1363280 | -0.809804 | 1.579124e-50 | -8.615850e-47 |
| Msa0220160 | Msa1429810 | 0.824968 | 6.053426e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220160 | MtrunA17_Chr2g0323651 | 92.308 | 91 | 4 | 1 | 161 | 248 | 1 | 91 | 1.69e-52 | 165 |
| Msa0220160 | MtrunA17_Chr2g0323651 | 60.714 | 84 | 28 | 2 | 79 | 158 | 6 | 88 | 8.02e-23 | 89.4 |
| Msa0220160 | MtrunA17_Chr2g0323651 | 51.765 | 85 | 32 | 2 | 1 | 78 | 1 | 83 | 1.94e-16 | 72.4 |
| Msa0220160 | MtrunA17_Chr2g0323711 | 92.308 | 91 | 4 | 1 | 161 | 248 | 1 | 91 | 1.69e-52 | 165 |
| Msa0220160 | MtrunA17_Chr2g0323711 | 60.714 | 84 | 28 | 2 | 79 | 158 | 6 | 88 | 8.02e-23 | 89.4 |
| Msa0220160 | MtrunA17_Chr2g0323711 | 51.765 | 85 | 32 | 2 | 1 | 78 | 1 | 83 | 1.94e-16 | 72.4 |
| Msa0220160 | MtrunA17_Chr2g0323631 | 93.750 | 80 | 5 | 0 | 79 | 158 | 9 | 88 | 4.12e-50 | 159 |
| Msa0220160 | MtrunA17_Chr2g0323631 | 59.341 | 91 | 35 | 2 | 159 | 248 | 2 | 91 | 4.68e-30 | 107 |
| Msa0220160 | MtrunA17_Chr2g0323631 | 63.014 | 73 | 23 | 3 | 10 | 78 | 11 | 83 | 9.04e-20 | 81.3 |
| Msa0220160 | MtrunA17_Chr2g0323571 | 91.250 | 80 | 7 | 0 | 79 | 158 | 9 | 88 | 2.16e-48 | 154 |
| Msa0220160 | MtrunA17_Chr2g0323571 | 61.290 | 93 | 30 | 3 | 159 | 248 | 2 | 91 | 1.80e-31 | 111 |
| Msa0220160 | MtrunA17_Chr2g0323571 | 63.014 | 73 | 23 | 3 | 10 | 78 | 11 | 83 | 5.74e-20 | 81.6 |
| Msa0220160 | MtrunA17_Chr2g0323671 | 90.000 | 80 | 8 | 0 | 79 | 158 | 9 | 88 | 6.83e-48 | 153 |
| Msa0220160 | MtrunA17_Chr2g0323671 | 61.290 | 93 | 30 | 3 | 159 | 248 | 2 | 91 | 2.57e-31 | 111 |
| Msa0220160 | MtrunA17_Chr2g0323671 | 63.014 | 73 | 23 | 3 | 10 | 78 | 11 | 83 | 1.32e-19 | 80.9 |
| Msa0220160 | MtrunA17_Chr2g0323601 | 91.304 | 92 | 4 | 2 | 161 | 248 | 1 | 92 | 3.75e-47 | 151 |
| Msa0220160 | MtrunA17_Chr2g0323601 | 60.000 | 85 | 28 | 3 | 79 | 158 | 6 | 89 | 5.17e-23 | 89.7 |
| Msa0220160 | MtrunA17_Chr2g0323601 | 50.000 | 86 | 33 | 2 | 1 | 78 | 1 | 84 | 5.74e-17 | 73.9 |
| Msa0220160 | MtrunA17_Chr2g0323661 | 92.308 | 78 | 4 | 1 | 1 | 78 | 1 | 76 | 1.71e-42 | 139 |
| Msa0220160 | MtrunA17_Chr2g0323661 | 60.000 | 90 | 28 | 2 | 161 | 248 | 1 | 84 | 2.05e-27 | 100 |
| Msa0220160 | MtrunA17_Chr2g0323661 | 65.385 | 78 | 21 | 3 | 81 | 158 | 10 | 81 | 9.24e-26 | 96.7 |
| Msa0220160 | MtrunA17_Chr2g0323611 | 88.462 | 78 | 7 | 1 | 1 | 78 | 1 | 76 | 8.74e-41 | 135 |
| Msa0220160 | MtrunA17_Chr2g0323611 | 57.778 | 90 | 30 | 2 | 161 | 248 | 1 | 84 | 2.22e-25 | 95.5 |
| Msa0220160 | MtrunA17_Chr2g0323611 | 62.821 | 78 | 23 | 3 | 81 | 158 | 10 | 81 | 9.98e-25 | 94.0 |
| Msa0220160 | MtrunA17_Chr2g0323681 | 79.167 | 96 | 12 | 1 | 161 | 248 | 1 | 96 | 2.12e-40 | 134 |
| Msa0220160 | MtrunA17_Chr2g0323681 | 55.056 | 89 | 30 | 2 | 79 | 158 | 6 | 93 | 2.14e-21 | 85.5 |
| Msa0220160 | MtrunA17_Chr2g0323681 | 48.889 | 90 | 32 | 2 | 1 | 78 | 1 | 88 | 2.20e-15 | 69.7 |
| Msa0220160 | MtrunA17_Chr2g0323701 | 67.416 | 89 | 28 | 1 | 161 | 248 | 1 | 89 | 1.39e-35 | 122 |
| Msa0220160 | MtrunA17_Chr2g0323701 | 63.529 | 85 | 26 | 3 | 78 | 159 | 5 | 87 | 9.27e-29 | 104 |
| Msa0220160 | MtrunA17_Chr2g0323701 | 60.000 | 75 | 23 | 2 | 10 | 78 | 8 | 81 | 4.59e-22 | 87.0 |
| Msa0220160 | MtrunA17_Chr2g0323721 | 67.416 | 89 | 28 | 1 | 161 | 248 | 1 | 89 | 2.06e-34 | 119 |
| Msa0220160 | MtrunA17_Chr2g0323721 | 61.905 | 84 | 27 | 3 | 78 | 158 | 5 | 86 | 6.72e-27 | 99.8 |
| Msa0220160 | MtrunA17_Chr2g0323721 | 54.054 | 74 | 29 | 1 | 10 | 78 | 8 | 81 | 1.59e-19 | 80.5 |
| Msa0220160 | MtrunA17_Chr4g0022611 | 73.034 | 89 | 23 | 1 | 161 | 248 | 1 | 89 | 8.69e-34 | 117 |
| Msa0220160 | MtrunA17_Chr4g0022611 | 72.289 | 83 | 20 | 2 | 78 | 158 | 5 | 86 | 2.18e-32 | 114 |
| Msa0220160 | MtrunA17_Chr4g0022611 | 60.241 | 83 | 26 | 3 | 1 | 78 | 1 | 81 | 8.75e-20 | 81.3 |
| Msa0220160 | MtrunA17_Chr2g0318601 | 55.682 | 88 | 34 | 2 | 161 | 247 | 1 | 84 | 6.95e-25 | 94.4 |
| Msa0220160 | MtrunA17_Chr2g0318601 | 50.000 | 88 | 39 | 2 | 79 | 166 | 6 | 88 | 1.58e-19 | 80.5 |
| Msa0220160 | MtrunA17_Chr2g0318601 | 48.101 | 79 | 38 | 2 | 1 | 78 | 1 | 77 | 4.68e-15 | 68.6 |
| Msa0220160 | MtrunA17_Chr2g0318611 | 55.682 | 88 | 34 | 2 | 161 | 247 | 1 | 84 | 2.04e-24 | 93.2 |
| Msa0220160 | MtrunA17_Chr2g0318611 | 52.273 | 88 | 37 | 2 | 79 | 166 | 6 | 88 | 3.92e-20 | 82.0 |
| Msa0220160 | MtrunA17_Chr2g0318611 | 50.633 | 79 | 36 | 2 | 1 | 78 | 1 | 77 | 1.03e-15 | 70.5 |
| Msa0220160 | MtrunA17_Chr2g0318641 | 47.959 | 98 | 40 | 5 | 153 | 247 | 26 | 115 | 5.02e-21 | 85.5 |
| Msa0220160 | MtrunA17_Chr2g0318641 | 53.086 | 81 | 31 | 3 | 79 | 158 | 39 | 113 | 2.20e-19 | 80.9 |
| Msa0220160 | MtrunA17_Chr2g0323551 | 49.438 | 89 | 43 | 2 | 161 | 248 | 1 | 88 | 1.61e-19 | 80.5 |
| Msa0220160 | MtrunA17_Chr2g0323551 | 51.250 | 80 | 37 | 2 | 80 | 158 | 7 | 85 | 2.07e-17 | 74.7 |
| Msa0220160 | MtrunA17_Chr2g0323551 | 53.521 | 71 | 29 | 2 | 12 | 78 | 10 | 80 | 3.68e-14 | 66.2 |
| Msa0220160 | MtrunA17_Chr2g0318591 | 52.273 | 88 | 37 | 2 | 161 | 247 | 1 | 84 | 2.08e-16 | 72.4 |
| Msa0220160 | MtrunA17_Chr2g0318591 | 44.944 | 89 | 44 | 2 | 78 | 166 | 5 | 88 | 4.25e-13 | 63.5 |
| Msa0220160 | MtrunA17_Chr2g0318591 | 49.367 | 79 | 37 | 2 | 1 | 78 | 1 | 77 | 1.79e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220160 | AT4G10265.1 | 66.250 | 80 | 22 | 1 | 79 | 158 | 6 | 80 | 9.10e-31 | 109 |
| Msa0220160 | AT4G10265.1 | 57.955 | 88 | 30 | 2 | 161 | 247 | 1 | 82 | 3.92e-28 | 103 |
| Msa0220160 | AT4G10265.1 | 56.962 | 79 | 29 | 4 | 1 | 78 | 1 | 75 | 5.73e-18 | 76.6 |
| Msa0220160 | AT4G10270.1 | 65.556 | 90 | 29 | 2 | 161 | 248 | 1 | 90 | 9.58e-29 | 104 |
| Msa0220160 | AT4G10270.1 | 66.265 | 83 | 26 | 1 | 79 | 159 | 6 | 88 | 9.68e-29 | 104 |
| Msa0220160 | AT4G10270.1 | 48.810 | 84 | 35 | 3 | 1 | 78 | 1 | 82 | 1.74e-14 | 67.4 |
Find 49 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGCTACCAAATTTA+AGG | 0.083204 | 2_1:+68355367 | Msa0220160:CDS |
| CTTCTCGTCATCCTTAAATT+TGG | 0.274261 | 2_1:-68355378 | None:intergenic |
| CAAAGACTCCTCTGCCTGTT+TGG | 0.289223 | 2_1:-68355402 | None:intergenic |
| AGCAATCAGAGGAATCTTTA+AGG | 0.315897 | 2_1:+68358197 | Msa0220160:CDS |
| CAAAGATTCCTCTGACTGTT+TGG | 0.319257 | 2_1:-68353189 | None:intergenic |
| AGTTATGTACTTGAGTTGTT+GGG | 0.380679 | 2_1:+68358222 | Msa0220160:CDS |
| AAGTTATGTACTTGAGTTGT+TGG | 0.395020 | 2_1:+68358221 | Msa0220160:CDS |
| CTGTCATGTACTTGAGCTGC+TGG | 0.406277 | 2_1:+68355429 | Msa0220160:CDS |
| CAACGAAAGCTCCTCTTAGT+TGG | 0.414374 | 2_1:-68358248 | None:intergenic |
| CTTCTTCTCCTACAAAATTG+AGG | 0.420361 | 2_1:+68353156 | Msa0220160:CDS |
| TGGAGTGGTGGAGGCTTTGA+AGG | 0.421743 | 2_1:+68353037 | Msa0220160:CDS |
| TTCTAATTCTAGACAACAAA+AGG | 0.422761 | 2_1:+68358171 | Msa0220160:CDS |
| CAAGAAGTCGAGCATGGAAA+TGG | 0.435768 | 2_1:+68352997 | Msa0220160:CDS |
| TTCTTCTCCTACAAAATTGA+GGG | 0.438254 | 2_1:+68353157 | Msa0220160:CDS |
| GGATGACGAGAAGGCCAAAC+AGG | 0.446723 | 2_1:+68355388 | Msa0220160:CDS |
| AACAGGCAGAGGAGTCTTTG+AGG | 0.455186 | 2_1:+68355405 | Msa0220160:CDS |
| TGTCATGTACTTGAGCTGCT+GGG | 0.470465 | 2_1:+68355430 | Msa0220160:CDS |
| GGCTGCAAGTGTTGGAGTTG+TGG | 0.471925 | 2_1:+68355226 | Msa0220160:CDS |
| AACATGCTAAACATAATATC+AGG | 0.478609 | 2_1:+68353105 | Msa0220160:CDS |
| AACGAAAGCTCCTCTTAGTT+GGG | 0.489304 | 2_1:-68358247 | None:intergenic |
| CGAGAAGGCCAAACAGGCAG+AGG | 0.493381 | 2_1:+68355394 | Msa0220160:CDS |
| AGCAGAGCATGGGTAGCTGC+AGG | 0.497606 | 2_1:+68358001 | Msa0220160:CDS |
| GTGGAAGCATTGAAAGATCA+AGG | 0.506795 | 2_1:+68358037 | Msa0220160:CDS |
| AGCAACAAGCAAAGCATGGA+TGG | 0.538950 | 2_1:+68355202 | Msa0220160:intron |
| GTGGAGGCTTTGAAGGATCA+AGG | 0.541801 | 2_1:+68353044 | Msa0220160:CDS |
| AACAAGTGTTGGAGTGGTGG+AGG | 0.544249 | 2_1:+68353028 | Msa0220160:CDS |
| GTTATGTACTTGAGTTGTTG+GGG | 0.552188 | 2_1:+68358223 | Msa0220160:CDS |
| TGAGTTCAACAAGCAGAGCA+TGG | 0.554075 | 2_1:+68357990 | Msa0220160:CDS |
| TGGAGTGTGGCAACAAGTGT+TGG | 0.555767 | 2_1:+68353017 | Msa0220160:CDS |
| TGCAGGCAGTGTTGCAGTTG+TGG | 0.558647 | 2_1:+68358018 | Msa0220160:CDS |
| GTCATGTACTTGAGCTGCTG+GGG | 0.565171 | 2_1:+68355431 | Msa0220160:CDS |
| GGCAACAAGTGTTGGAGTGG+TGG | 0.567978 | 2_1:+68353025 | Msa0220160:CDS |
| CAACAGCAACAAGCAAAGCA+TGG | 0.569299 | 2_1:+68355198 | Msa0220160:intron |
| CTTGAGACATTGATTTAACA+CGG | 0.573162 | 2_1:-68355322 | None:intergenic |
| TGGATGGTGGCTGCAAGTGT+TGG | 0.573709 | 2_1:+68355218 | Msa0220160:CDS |
| GAGTTCAACAAGCAGAGCAT+GGG | 0.590239 | 2_1:+68357991 | Msa0220160:CDS |
| TGAGTTCAAGAAGTCGAGCA+TGG | 0.595594 | 2_1:+68352991 | Msa0220160:CDS |
| CAAATTTAAGGATGACGAGA+AGG | 0.602457 | 2_1:+68355379 | Msa0220160:CDS |
| TGCAAGTGTTGGAGTTGTGG+AGG | 0.602761 | 2_1:+68355229 | Msa0220160:CDS |
| AAGATCAAGCTGGTATCTGT+AGG | 0.603543 | 2_1:+68355258 | Msa0220160:CDS |
| TGACATATCCAAACAGTCAG+AGG | 0.607358 | 2_1:+68353181 | Msa0220160:CDS |
| ATCAAGCTGGTATCTGTAGG+TGG | 0.610789 | 2_1:+68355261 | Msa0220160:CDS |
| AAGATCAAGGAATATGCAGA+TGG | 0.613727 | 2_1:+68358050 | Msa0220160:CDS |
| AGGATCAAGGAATATGCAGA+TGG | 0.620547 | 2_1:+68353057 | Msa0220160:CDS |
| AACAAGCAAAGCATGGATGG+TGG | 0.650577 | 2_1:+68355205 | Msa0220160:intron |
| ACAAAAGGCAAAGCAATCAG+AGG | 0.651467 | 2_1:+68358186 | Msa0220160:CDS |
| TGTGGCAACAAGTGTTGGAG+TGG | 0.655283 | 2_1:+68353022 | Msa0220160:CDS |
| GAGGCATTGAAAGATCAAGC+TGG | 0.657595 | 2_1:+68355248 | Msa0220160:CDS |
| TCGAGCATGGAAATGGAGTG+TGG | 0.664293 | 2_1:+68353004 | Msa0220160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTATTTG+TGG | + | chr2_1:68353459-68353478 | Msa0220160:intron | 10.0% |
| !!! | TTTTCAAAGATATTATATTT+TGG | - | chr2_1:68354263-68354282 | None:intergenic | 10.0% |
| !!! | TTATGGATAATTTTTTTTTA+CGG | - | chr2_1:68355613-68355632 | None:intergenic | 10.0% |
| !! | AAATGTTAATTTCTTTAGTT+GGG | - | chr2_1:68353245-68353264 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAACTTTTATTCG+TGG | + | chr2_1:68353516-68353535 | Msa0220160:intron | 15.0% |
| !! | ATTATTAATCTAACAAATTG+TGG | - | chr2_1:68353656-68353675 | None:intergenic | 15.0% |
| !!! | ATTTTGATATTCCTATAAAA+TGG | + | chr2_1:68354200-68354219 | Msa0220160:intron | 15.0% |
| !! | CTAATCAAATAAGATTAAAT+AGG | - | chr2_1:68354337-68354356 | None:intergenic | 15.0% |
| !!! | ATTTAATCTTATTTGATTAG+AGG | + | chr2_1:68354337-68354356 | Msa0220160:intron | 15.0% |
| !!! | AACATCAAAACAAATTTTTT+AGG | + | chr2_1:68354575-68354594 | Msa0220160:intron | 15.0% |
| !!! | TATGTTTTATAGTTGATTTT+TGG | - | chr2_1:68355164-68355183 | None:intergenic | 15.0% |
| !! | TATGTACAAATTAATCAATT+GGG | - | chr2_1:68355458-68355477 | None:intergenic | 15.0% |
| !! | AAACCTTCATATATAATATA+TGG | - | chr2_1:68356043-68356062 | None:intergenic | 15.0% |
| !!! | TGTTGTTATTCTATTTAATT+AGG | + | chr2_1:68356606-68356625 | Msa0220160:intron | 15.0% |
| !! | GCAAAAAGAAAATAAAAATT+AGG | + | chr2_1:68356951-68356970 | Msa0220160:intron | 15.0% |
| !! | ACAAGTTAAAATAGTTAAAA+AGG | + | chr2_1:68357498-68357517 | Msa0220160:intron | 15.0% |
| !! | TAATAAGATTAGATGAATAT+TGG | + | chr2_1:68357640-68357659 | Msa0220160:intron | 15.0% |
| !! | GAAATGTTAATTTCTTTAGT+TGG | - | chr2_1:68353246-68353265 | None:intergenic | 20.0% |
| !! | TTAACATTTCATTTATGCAA+AGG | + | chr2_1:68353256-68353275 | Msa0220160:intron | 20.0% |
| !!! | TATATGAGATTAAGCTTTTT+AGG | - | chr2_1:68353775-68353794 | None:intergenic | 20.0% |
| !! | AAAACATATGAGATTTCATT+TGG | + | chr2_1:68353796-68353815 | Msa0220160:intron | 20.0% |
| !! | AAACATATGAGATTTCATTT+GGG | + | chr2_1:68353797-68353816 | Msa0220160:intron | 20.0% |
| !! | TGTAGCTTATAATTTAATCA+GGG | + | chr2_1:68353944-68353963 | Msa0220160:intron | 20.0% |
| !! | AGAACATTCAAATAACTAAA+AGG | - | chr2_1:68354017-68354036 | None:intergenic | 20.0% |
| !! | ACTTAACAGTTAGTATTATA+TGG | - | chr2_1:68354170-68354189 | None:intergenic | 20.0% |
| !!! | TAAAATGAAGTCTTGTTAAT+AGG | + | chr2_1:68354425-68354444 | Msa0220160:intron | 20.0% |
| !! | TAAAACAAAATAATCTACCT+TGG | - | chr2_1:68354663-68354682 | None:intergenic | 20.0% |
| !!! | TTTTATTTCATTTCCAAAAC+CGG | + | chr2_1:68354678-68354697 | Msa0220160:intron | 20.0% |
| !!! | AATGTTCGATCTTATTTATA+TGG | - | chr2_1:68354777-68354796 | None:intergenic | 20.0% |
| !! | CTATGTACAAATTAATCAAT+TGG | - | chr2_1:68355459-68355478 | None:intergenic | 20.0% |
| !! | GTAAAGTTTGTAATATCAAA+CGG | + | chr2_1:68355504-68355523 | Msa0220160:intron | 20.0% |
| !!! | TTTACTTGATTAGTTCAAAA+AGG | + | chr2_1:68355655-68355674 | Msa0220160:intron | 20.0% |
| !!! | TTGTTGATAGTACATTTAAT+TGG | + | chr2_1:68355799-68355818 | Msa0220160:intron | 20.0% |
| !!! | TAAATTTGATAATGTGAAGT+TGG | + | chr2_1:68355890-68355909 | Msa0220160:intron | 20.0% |
| !!! | TATTTAATTAGGTGATTTGT+TGG | + | chr2_1:68356617-68356636 | Msa0220160:intron | 20.0% |
| !!! | TCTTAGCATTTTAAGAAAAA+AGG | - | chr2_1:68356832-68356851 | None:intergenic | 20.0% |
| !!! | CAAGTTATTATAATTTGTCT+AGG | - | chr2_1:68357399-68357418 | None:intergenic | 20.0% |
| !!! | GGCTTTTAAAAAAAAATCAT+TGG | + | chr2_1:68357661-68357680 | Msa0220160:intron | 20.0% |
| ! | AACATGCTAAACATAATATC+AGG | + | chr2_1:68353105-68353124 | Msa0220160:CDS | 25.0% |
| !!! | AGAAGAAGAAATTTTGTTGT+TGG | - | chr2_1:68353144-68353163 | None:intergenic | 25.0% |
| !! | CAAAAAATTTTGTGCTTGAT+TGG | - | chr2_1:68353287-68353306 | None:intergenic | 25.0% |
| ! | GTAGAGATTTGTGTATATAT+AGG | + | chr2_1:68353402-68353421 | Msa0220160:intron | 25.0% |
| ! | GCAGCAATATATAAGAATAT+TGG | + | chr2_1:68353619-68353638 | Msa0220160:intron | 25.0% |
| ! | CTCTACTTTAATTATGTTCA+AGG | - | chr2_1:68353715-68353734 | None:intergenic | 25.0% |
| ! | TGAACATAATTAAAGTAGAG+AGG | + | chr2_1:68353715-68353734 | Msa0220160:intron | 25.0% |
| ! | TGCATAATATATGCTAGATT+CGG | - | chr2_1:68353921-68353940 | None:intergenic | 25.0% |
| ! | GTGTAGCTTATAATTTAATC+AGG | + | chr2_1:68353943-68353962 | Msa0220160:intron | 25.0% |
| ! | ATTCCTATAAAATGGTATCT+TGG | + | chr2_1:68354208-68354227 | Msa0220160:intron | 25.0% |
| !! | AATCCAAGATACCATTTTAT+AGG | - | chr2_1:68354214-68354233 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | + | chr2_1:68355028-68355047 | Msa0220160:intron | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | + | chr2_1:68355029-68355048 | Msa0220160:intron | 25.0% |
| ! | AAGAAAATGAGATTGTTGAT+GGG | - | chr2_1:68355103-68355122 | None:intergenic | 25.0% |
| ! | TAAGAAAATGAGATTGTTGA+TGG | - | chr2_1:68355104-68355123 | None:intergenic | 25.0% |
| !! | ATTTGTTGCTACCAAATTTA+AGG | + | chr2_1:68355367-68355386 | Msa0220160:CDS | 25.0% |
| !! | CAAGTTGTGATAAGTTTTTA+TGG | - | chr2_1:68355630-68355649 | None:intergenic | 25.0% |
| !! | AAGAGTTAATTTGGTATCAT+TGG | - | chr2_1:68355970-68355989 | None:intergenic | 25.0% |
| !! | GATTGTGTAATGTAATTTTG+TGG | - | chr2_1:68356917-68356936 | None:intergenic | 25.0% |
| !! | TTATTTTCTTTTTGCTGCAT+GGG | - | chr2_1:68356946-68356965 | None:intergenic | 25.0% |
| !!! | TTTATTTTCTTTTTGCTGCA+TGG | - | chr2_1:68356947-68356966 | None:intergenic | 25.0% |
| ! | TTCATTAACTGAAAAGGTTA+AGG | - | chr2_1:68357076-68357095 | None:intergenic | 25.0% |
| ! | TCTTCATTCATTAACTGAAA+AGG | - | chr2_1:68357082-68357101 | None:intergenic | 25.0% |
| ! | TTTCAGTTAATGAATGAAGA+AGG | + | chr2_1:68357082-68357101 | Msa0220160:intron | 25.0% |
| ! | TCATATAGATTTCTGTACAA+AGG | - | chr2_1:68357142-68357161 | None:intergenic | 25.0% |
| ! | TCTATATGATGTTAAAAGCT+AGG | + | chr2_1:68357153-68357172 | Msa0220160:intron | 25.0% |
| ! | AGATAAGTTTAATGTGTCAA+TGG | + | chr2_1:68357712-68357731 | Msa0220160:intron | 25.0% |
| !! | TTTGAGATGCTAAAGTTAAT+AGG | - | chr2_1:68357829-68357848 | None:intergenic | 25.0% |
| ! | TTCTAATTCTAGACAACAAA+AGG | + | chr2_1:68358171-68358190 | Msa0220160:CDS | 25.0% |
| TTCTTCTCCTACAAAATTGA+GGG | + | chr2_1:68353157-68353176 | Msa0220160:CDS | 30.0% | |
| ! | AATCATGCCTTTTATTGCTT+TGG | + | chr2_1:68353340-68353359 | Msa0220160:intron | 30.0% |
| TCATGATCCAAAGCAATAAA+AGG | - | chr2_1:68353350-68353369 | None:intergenic | 30.0% | |
| ACTTCACGTATTCATGTTAA+AGG | - | chr2_1:68353883-68353902 | None:intergenic | 30.0% | |
| GCATAATATATGCTAGATTC+GGG | - | chr2_1:68353920-68353939 | None:intergenic | 30.0% | |
| ! | CTTAAGATTTTTGATGCTCT+TGG | + | chr2_1:68353972-68353991 | Msa0220160:intron | 30.0% |
| TTTGTTGAATATTTGACCGA+AGG | + | chr2_1:68354365-68354384 | Msa0220160:intron | 30.0% | |
| TTGTTGAATATTTGACCGAA+GGG | + | chr2_1:68354366-68354385 | Msa0220160:intron | 30.0% | |
| !! | TTTTAGGCACGTTTAAGATA+AGG | + | chr2_1:68354591-68354610 | Msa0220160:intron | 30.0% |
| AACCATTAAAGTGAGTTAGA+TGG | + | chr2_1:68354614-68354633 | Msa0220160:intron | 30.0% | |
| TATACTCCATCAATCAACAA+TGG | + | chr2_1:68354804-68354823 | Msa0220160:intron | 30.0% | |
| ATACTCCATCAATCAACAAT+GGG | + | chr2_1:68354805-68354824 | Msa0220160:intron | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | - | chr2_1:68354879-68354898 | None:intergenic | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | - | chr2_1:68354880-68354899 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | + | chr2_1:68355000-68355019 | Msa0220160:intron | 30.0% | |
| AGAAAATGAGATTGTTGATG+GGG | - | chr2_1:68355102-68355121 | None:intergenic | 30.0% | |
| AAGATGTAGATAGAGTTGTT+TGG | - | chr2_1:68355131-68355150 | None:intergenic | 30.0% | |
| !! | CTTGAGACATTGATTTAACA+CGG | - | chr2_1:68355325-68355344 | None:intergenic | 30.0% |
| AACGGCAATATTATTCAATG+AGG | + | chr2_1:68355522-68355541 | Msa0220160:intron | 30.0% | |
| ! | TACCTGATCAGTATTGAATT+TGG | + | chr2_1:68355582-68355601 | Msa0220160:intron | 30.0% |
| TACCAAATTCAATACTGATC+AGG | - | chr2_1:68355587-68355606 | None:intergenic | 30.0% | |
| ! | TTAGTTCAAAAAGGTCGTTT+TGG | + | chr2_1:68355664-68355683 | Msa0220160:intron | 30.0% |
| TCTAAGAATGACATGTAATG+AGG | - | chr2_1:68355841-68355860 | None:intergenic | 30.0% | |
| TGATACCAAATTAACTCTTG+AGG | + | chr2_1:68355971-68355990 | Msa0220160:intron | 30.0% | |
| !!! | CCAGCTGAATTTATTTTTAG+CGG | + | chr2_1:68356017-68356036 | Msa0220160:intron | 30.0% |
| CGGCCATATATTATATATGA+AGG | + | chr2_1:68356037-68356056 | Msa0220160:intron | 30.0% | |
| AAAAACAAAAAAGAGCAGCA+AGG | + | chr2_1:68356086-68356105 | Msa0220160:intron | 30.0% | |
| AAAACAAAAAAGAGCAGCAA+GGG | + | chr2_1:68356087-68356106 | Msa0220160:intron | 30.0% | |
| GAAAAGAAAACTAAAGCGTA+GGG | + | chr2_1:68356109-68356128 | Msa0220160:intron | 30.0% | |
| GATGACTTCATGACAAAATT+AGG | - | chr2_1:68356225-68356244 | None:intergenic | 30.0% | |
| TTCCTTCTTTGATTGTATGA+TGG | + | chr2_1:68356253-68356272 | Msa0220160:intron | 30.0% | |
| !! | TATGATGGACAAAGTAGTTT+CGG | + | chr2_1:68356268-68356287 | Msa0220160:intron | 30.0% |
| ! | TGCAATATGTCATTTGAATG+AGG | + | chr2_1:68356462-68356481 | Msa0220160:intron | 30.0% |
| ! | GCAATATGTCATTTGAATGA+GGG | + | chr2_1:68356463-68356482 | Msa0220160:intron | 30.0% |
| TCACAACCTTTGTAACATAA+GGG | - | chr2_1:68356806-68356825 | None:intergenic | 30.0% | |
| AGGTTAAGGTTTAGATGTAT+TGG | - | chr2_1:68357062-68357081 | None:intergenic | 30.0% | |
| ! | TGAGAGGATTTTCAATCATA+AGG | - | chr2_1:68357112-68357131 | None:intergenic | 30.0% |
| ! | AAAAGCTAGGCGATAATTTT+TGG | + | chr2_1:68357166-68357185 | Msa0220160:intron | 30.0% |
| ACATTTCATCACAGTAACAA+CGG | - | chr2_1:68357239-68357258 | None:intergenic | 30.0% | |
| !!! | TGACTTTGGAGTCATATTTT+TGG | - | chr2_1:68357278-68357297 | None:intergenic | 30.0% |
| !!! | GATCACTTATTTTTTCAACG+CGG | - | chr2_1:68357313-68357332 | None:intergenic | 30.0% |
| TTTCAAACAACAACATTCAG+TGG | + | chr2_1:68357339-68357358 | Msa0220160:intron | 30.0% | |
| !! | AGTTTTATGATTGTTGCAAG+AGG | + | chr2_1:68357449-68357468 | Msa0220160:intron | 30.0% |
| !! | GTTAGTTGTTTTCTAGACTA+TGG | - | chr2_1:68357757-68357776 | None:intergenic | 30.0% |
| TGAAGGAGGTTGTTATATAT+AGG | - | chr2_1:68357856-68357875 | None:intergenic | 30.0% | |
| !!! | ATGTATCTTGTGTTTTTGGT+TGG | - | chr2_1:68357893-68357912 | None:intergenic | 30.0% |
| ! | GTGTATGTATCTTGTGTTTT+TGG | - | chr2_1:68357897-68357916 | None:intergenic | 30.0% |
| ! | AAGTTATGTACTTGAGTTGT+TGG | + | chr2_1:68358221-68358240 | Msa0220160:CDS | 30.0% |
| ! | AGTTATGTACTTGAGTTGTT+GGG | + | chr2_1:68358222-68358241 | Msa0220160:CDS | 30.0% |
| CTTCTTCTCCTACAAAATTG+AGG | + | chr2_1:68353156-68353175 | Msa0220160:CDS | 35.0% | |
| ! | ATGTCATCCCTCAATTTTGT+AGG | - | chr2_1:68353167-68353186 | None:intergenic | 35.0% |
| ! | TATTGCTTTGGATCATGAAG+TGG | + | chr2_1:68353352-68353371 | Msa0220160:intron | 35.0% |
| ! | GAAGTGATCAACTTTTGCAT+GGG | + | chr2_1:68353380-68353399 | Msa0220160:intron | 35.0% |
| !!! | GATATTATATTTTGGCCTCG+AGG | - | chr2_1:68354255-68354274 | None:intergenic | 35.0% |
| TGTTGAATATTTGACCGAAG+GGG | + | chr2_1:68354367-68354386 | Msa0220160:intron | 35.0% | |
| CTCCATCTAACTCACTTTAA+TGG | - | chr2_1:68354619-68354638 | None:intergenic | 35.0% | |
| AGCTAGATAACTAACACACT+TGG | - | chr2_1:68354731-68354750 | None:intergenic | 35.0% | |
| TTAGTTATCTAGCTAGCTCA+TGG | + | chr2_1:68354737-68354756 | Msa0220160:intron | 35.0% | |
| ! | TGTTGATTGATGGAGTATAG+AGG | - | chr2_1:68354803-68354822 | None:intergenic | 35.0% |
| TACTCCATCAATCAACAATG+GGG | + | chr2_1:68354806-68354825 | Msa0220160:intron | 35.0% | |
| ! | AATTCCCCATTGTTGATTGA+TGG | - | chr2_1:68354813-68354832 | None:intergenic | 35.0% |
| ACTAACGAAGTCTACATTCA+GGG | + | chr2_1:68354936-68354955 | Msa0220160:intron | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | + | chr2_1:68354953-68354972 | Msa0220160:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | + | chr2_1:68354999-68355018 | Msa0220160:intron | 35.0% | |
| CTTCTCGTCATCCTTAAATT+TGG | - | chr2_1:68355381-68355400 | None:intergenic | 35.0% | |
| CAAATTTAAGGATGACGAGA+AGG | + | chr2_1:68355379-68355398 | Msa0220160:CDS | 35.0% | |
| CACTGAGAAACATAGATATG+TGG | - | chr2_1:68355560-68355579 | None:intergenic | 35.0% | |
| AATTCAGATGAAGATCGTGT+TGG | + | chr2_1:68355726-68355745 | Msa0220160:intron | 35.0% | |
| GAATGTTCCTTAAAGTGTGT+TGG | + | chr2_1:68355918-68355937 | Msa0220160:intron | 35.0% | |
| CACATCCTCAAGAGTTAATT+TGG | - | chr2_1:68355979-68355998 | None:intergenic | 35.0% | |
| CCGCTAAAAATAAATTCAGC+TGG | - | chr2_1:68356020-68356039 | None:intergenic | 35.0% | |
| GGAAAAGAAAACTAAAGCGT+AGG | + | chr2_1:68356108-68356127 | Msa0220160:intron | 35.0% | |
| TTGTCATGAAGTCATCACTA+TGG | + | chr2_1:68356229-68356248 | Msa0220160:intron | 35.0% | |
| GTCCATCATACAATCAAAGA+AGG | - | chr2_1:68356258-68356277 | None:intergenic | 35.0% | |
| !! | ATGATGGACAAAGTAGTTTC+GGG | + | chr2_1:68356269-68356288 | Msa0220160:intron | 35.0% |
| CTCTCAATCAATCTCATCTT+GGG | - | chr2_1:68356357-68356376 | None:intergenic | 35.0% | |
| TCTCTCAATCAATCTCATCT+TGG | - | chr2_1:68356358-68356377 | None:intergenic | 35.0% | |
| AGATGAGATTGATTGAGAGA+AGG | + | chr2_1:68356358-68356377 | Msa0220160:intron | 35.0% | |
| GATGAGATTGATTGAGAGAA+GGG | + | chr2_1:68356359-68356378 | Msa0220160:intron | 35.0% | |
| TGTTCCATTCTCAATGTTGA+TGG | - | chr2_1:68356578-68356597 | None:intergenic | 35.0% | |
| CTCACAACCTTTGTAACATA+AGG | - | chr2_1:68356807-68356826 | None:intergenic | 35.0% | |
| TTGATTGTGATTGTCTCACT+TGG | - | chr2_1:68357011-68357030 | None:intergenic | 35.0% | |
| TAGATTTCTGTACAAAGGAG+AGG | - | chr2_1:68357137-68357156 | None:intergenic | 35.0% | |
| ATCATCTCCTTCAGTTTGAT+GGG | - | chr2_1:68357205-68357224 | None:intergenic | 35.0% | |
| !!! | AGTCATATTTTTGGCTGGTT+AGG | - | chr2_1:68357269-68357288 | None:intergenic | 35.0% |
| !!! | TTTGGAGTCATATTTTTGGC+TGG | - | chr2_1:68357274-68357293 | None:intergenic | 35.0% |
| TATATAGAAGACAGTGACAG+TGG | - | chr2_1:68357616-68357635 | None:intergenic | 35.0% | |
| AAAGAATAGGAAAATACCGG+GGG | - | chr2_1:68357792-68357811 | None:intergenic | 35.0% | |
| CAAAGAATAGGAAAATACCG+GGG | - | chr2_1:68357793-68357812 | None:intergenic | 35.0% | |
| CCAAAGAATAGGAAAATACC+GGG | - | chr2_1:68357794-68357813 | None:intergenic | 35.0% | |
| CCCAAAGAATAGGAAAATAC+CGG | - | chr2_1:68357795-68357814 | None:intergenic | 35.0% | |
| ! | CCGGTATTTTCCTATTCTTT+GGG | + | chr2_1:68357792-68357811 | Msa0220160:intron | 35.0% |
| AAGATCAAGGAATATGCAGA+TGG | + | chr2_1:68358050-68358069 | Msa0220160:CDS | 35.0% | |
| ATCTTCTTCTTCTTCTGCTA+TGG | + | chr2_1:68358147-68358166 | Msa0220160:CDS | 35.0% | |
| AGCAATCAGAGGAATCTTTA+AGG | + | chr2_1:68358197-68358216 | Msa0220160:CDS | 35.0% | |
| ! | GTTATGTACTTGAGTTGTTG+GGG | + | chr2_1:68358223-68358242 | Msa0220160:CDS | 35.0% |
| AGGATCAAGGAATATGCAGA+TGG | + | chr2_1:68353057-68353076 | Msa0220160:CDS | 40.0% | |
| TGACATATCCAAACAGTCAG+AGG | + | chr2_1:68353181-68353200 | Msa0220160:CDS | 40.0% | |
| CAAAGATTCCTCTGACTGTT+TGG | - | chr2_1:68353192-68353211 | None:intergenic | 40.0% | |
| TTTGGATCATGAAGTGGTCT+TGG | + | chr2_1:68353358-68353377 | Msa0220160:intron | 40.0% | |
| ! | GGAAGTGATCAACTTTTGCA+TGG | + | chr2_1:68353379-68353398 | Msa0220160:intron | 40.0% |
| !! | CAAGCATTGAAGACGAAACT+TGG | + | chr2_1:68353597-68353616 | Msa0220160:intron | 40.0% |
| !!! | TTATATTTTGGCCTCGAGGA+TGG | - | chr2_1:68354251-68354270 | None:intergenic | 40.0% |
| GTTGAATATTTGACCGAAGG+GGG | + | chr2_1:68354368-68354387 | Msa0220160:intron | 40.0% | |
| GTTAGATGGAGTGAACGTAA+TGG | + | chr2_1:68354628-68354647 | Msa0220160:intron | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr2_1:68354832-68354851 | Msa0220160:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr2_1:68354833-68354852 | Msa0220160:intron | 40.0% |
| GACTAACGAAGTCTACATTC+AGG | + | chr2_1:68354935-68354954 | Msa0220160:intron | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr2_1:68354833-68354852 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr2_1:68354832-68354851 | None:intergenic | 40.0% |
| AAGATCAAGCTGGTATCTGT+AGG | + | chr2_1:68355258-68355277 | Msa0220160:CDS | 40.0% | |
| !! | AAGGTCGTTTTGGTGAAAGA+AGG | + | chr2_1:68355674-68355693 | Msa0220160:intron | 40.0% |
| !! | TCCTTAAAGTGTGTTGGCTT+TGG | + | chr2_1:68355924-68355943 | Msa0220160:intron | 40.0% |
| TCCAAAGCCAACACACTTTA+AGG | - | chr2_1:68355928-68355947 | None:intergenic | 40.0% | |
| !! | TGGCTTTGGAGAGGTTAATT+TGG | + | chr2_1:68355938-68355957 | Msa0220160:intron | 40.0% |
| GATGACAAACAGATCATCTG+CGG | + | chr2_1:68356194-68356213 | Msa0220160:intron | 40.0% | |
| TCAGGACATCAAAGACCTTA+TGG | - | chr2_1:68356298-68356317 | None:intergenic | 40.0% | |
| CATTTACGCTGTTCTTGTTC+AGG | - | chr2_1:68356316-68356335 | None:intergenic | 40.0% | |
| GAACAAGAACAGCGTAAATG+TGG | + | chr2_1:68356316-68356335 | Msa0220160:intron | 40.0% | |
| !! | TACCCATGTTGATAGCCATA+TGG | + | chr2_1:68356409-68356428 | Msa0220160:intron | 40.0% |
| CACCATATGGCTATCAACAT+GGG | - | chr2_1:68356414-68356433 | None:intergenic | 40.0% | |
| ! | AATGTTGATGGAGCTGCAAT+GGG | - | chr2_1:68356566-68356585 | None:intergenic | 40.0% |
| AGCTCCATCAACATTGAGAA+TGG | + | chr2_1:68356571-68356590 | Msa0220160:intron | 40.0% | |
| GTAACCAAGTCTCGTTGTTA+AGG | + | chr2_1:68356717-68356736 | Msa0220160:intron | 40.0% | |
| ! | TGGTGGAATATTTTCCTTGC+CGG | - | chr2_1:68356779-68356798 | None:intergenic | 40.0% |
| CTTTGTAACATAAGGGCTCT+TGG | - | chr2_1:68356799-68356818 | None:intergenic | 40.0% | |
| CAAGAGCCCTTATGTTACAA+AGG | + | chr2_1:68356797-68356816 | Msa0220160:intron | 40.0% | |
| TTCTCTGATACACATTGTGC+TGG | - | chr2_1:68356884-68356903 | None:intergenic | 40.0% | |
| ATTGTGATTGTCTCACTTGG+AGG | - | chr2_1:68357008-68357027 | None:intergenic | 40.0% | |
| GATCATCTCCTTCAGTTTGA+TGG | - | chr2_1:68357206-68357225 | None:intergenic | 40.0% | |
| !! | GGCTTTATTACAGGTGACTT+TGG | - | chr2_1:68357292-68357311 | None:intergenic | 40.0% |
| !! | TTTCAACGCGGCTTTATTAC+AGG | - | chr2_1:68357301-68357320 | None:intergenic | 40.0% |
| ! | CGAAGTGTTCACAGTTTACA+TGG | + | chr2_1:68357474-68357493 | Msa0220160:intron | 40.0% |
| ! | CCCGGTATTTTCCTATTCTT+TGG | + | chr2_1:68357791-68357810 | Msa0220160:intron | 40.0% |
| TGATGAAACGCCCAAAGAAT+AGG | - | chr2_1:68357805-68357824 | None:intergenic | 40.0% | |
| TTGATGAAGAAGAGTGAAGG+AGG | - | chr2_1:68357870-68357889 | None:intergenic | 40.0% | |
| !! | TGGTTGATGAAGAAGAGTGA+AGG | - | chr2_1:68357873-68357892 | None:intergenic | 40.0% |
| !! | GTGGAAGCATTGAAAGATCA+AGG | + | chr2_1:68358037-68358056 | Msa0220160:CDS | 40.0% |
| ACAAAAGGCAAAGCAATCAG+AGG | + | chr2_1:68358186-68358205 | Msa0220160:CDS | 40.0% | |
| TGAGTTCAAGAAGTCGAGCA+TGG | + | chr2_1:68352991-68353010 | Msa0220160:CDS | 45.0% | |
| CAAGAAGTCGAGCATGGAAA+TGG | + | chr2_1:68352997-68353016 | Msa0220160:CDS | 45.0% | |
| TGTCATGTTCTTGAGCTGCT+GGG | + | chr2_1:68353217-68353236 | Msa0220160:intron | 45.0% | |
| AATAGGTGTCTTCGTGACAC+TGG | + | chr2_1:68354442-68354461 | Msa0220160:intron | 45.0% | |
| GAGTGAACGTAATGGCAAAG+TGG | + | chr2_1:68354636-68354655 | Msa0220160:intron | 45.0% | |
| AAACCACAGGCTATGTCTAC+CGG | - | chr2_1:68354700-68354719 | None:intergenic | 45.0% | |
| !! | CTTGGTTTTCGAGAAACCAC+AGG | - | chr2_1:68354713-68354732 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | + | chr2_1:68354834-68354853 | Msa0220160:intron | 45.0% |
| TATGCAAAACAGTCCCTGCA+TGG | + | chr2_1:68354892-68354911 | Msa0220160:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | chr2_1:68354904-68354923 | Msa0220160:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | chr2_1:68354908-68354927 | None:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | + | chr2_1:68354968-68354987 | Msa0220160:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr2_1:68354834-68354853 | None:intergenic | 45.0% |
| CAACAGCAACAAGCAAAGCA+TGG | + | chr2_1:68355198-68355217 | Msa0220160:intron | 45.0% | |
| AGCAACAAGCAAAGCATGGA+TGG | + | chr2_1:68355202-68355221 | Msa0220160:intron | 45.0% | |
| AACAAGCAAAGCATGGATGG+TGG | + | chr2_1:68355205-68355224 | Msa0220160:intron | 45.0% | |
| !! | GAGGCATTGAAAGATCAAGC+TGG | + | chr2_1:68355248-68355267 | Msa0220160:CDS | 45.0% |
| ATCAAGCTGGTATCTGTAGG+TGG | + | chr2_1:68355261-68355280 | Msa0220160:CDS | 45.0% | |
| TGTCATGTACTTGAGCTGCT+GGG | + | chr2_1:68355430-68355449 | Msa0220160:CDS | 45.0% | |
| !! | AAAGTGTGTTGGCTTTGGAG+AGG | + | chr2_1:68355929-68355948 | Msa0220160:intron | 45.0% |
| ! | TCTTCTCAGGATGGATTCGA+TGG | - | chr2_1:68356145-68356164 | None:intergenic | 45.0% |
| ATCGAATCCATCCTGAGAAG+AGG | + | chr2_1:68356144-68356163 | Msa0220160:intron | 45.0% | |
| AATCCATCCTGAGAAGAGGA+AGG | + | chr2_1:68356148-68356167 | Msa0220160:intron | 45.0% | |
| TGTCATCCATTCTTCTCCAC+CGG | - | chr2_1:68356181-68356200 | None:intergenic | 45.0% | |
| ! | AGTAGTTTCGGGTAGCCATA+AGG | + | chr2_1:68356280-68356299 | Msa0220160:intron | 45.0% |
| ACAGCGTAAATGTGGTACTG+CGG | + | chr2_1:68356324-68356343 | Msa0220160:intron | 45.0% | |
| CCACCATATGGCTATCAACA+TGG | - | chr2_1:68356415-68356434 | None:intergenic | 45.0% | |
| !! | CCATGTTGATAGCCATATGG+TGG | + | chr2_1:68356412-68356431 | Msa0220160:intron | 45.0% |
| AGTGCATGCATGTATCTCAC+AGG | - | chr2_1:68356504-68356523 | None:intergenic | 45.0% | |
| GTACACCATCAAAACCTGCT+CGG | + | chr2_1:68356532-68356551 | Msa0220160:intron | 45.0% | |
| ! | ATGTTGATGGAGCTGCAATG+GGG | - | chr2_1:68356565-68356584 | None:intergenic | 45.0% |
| ! | CAATGTTGATGGAGCTGCAA+TGG | - | chr2_1:68356567-68356586 | None:intergenic | 45.0% |
| TCTCTCGTGTTGAAAGCTCA+AGG | + | chr2_1:68356649-68356668 | Msa0220160:intron | 45.0% | |
| TGTGCCTTAACAACGAGACT+TGG | - | chr2_1:68356724-68356743 | None:intergenic | 45.0% | |
| GATATCTCTAAACCCACTCG+AGG | + | chr2_1:68356753-68356772 | Msa0220160:intron | 45.0% | |
| TGTAACATAAGGGCTCTTGG+TGG | - | chr2_1:68356796-68356815 | None:intergenic | 45.0% | |
| TGATACACATTGTGCTGGAG+GGG | - | chr2_1:68356879-68356898 | None:intergenic | 45.0% | |
| CTGATACACATTGTGCTGGA+GGG | - | chr2_1:68356880-68356899 | None:intergenic | 45.0% | |
| TCTGATACACATTGTGCTGG+AGG | - | chr2_1:68356881-68356900 | None:intergenic | 45.0% | |
| GTACAAAGGAGAGGAATGAG+AGG | - | chr2_1:68357128-68357147 | None:intergenic | 45.0% | |
| TAACAATAGCTTTCAGCCCC+CGG | + | chr2_1:68357773-68357792 | Msa0220160:intron | 45.0% | |
| TGAGTTCAACAAGCAGAGCA+TGG | + | chr2_1:68357990-68358009 | Msa0220160:CDS | 45.0% | |
| GAGTTCAACAAGCAGAGCAT+GGG | + | chr2_1:68357991-68358010 | Msa0220160:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAACATAAA+AGG | - | chr2_1:68353832-68353851 | None:intergenic | 5.0% |
| !! | ATGTTAAAAAAAAAATAAAT+TGG | - | chr2_1:68354560-68354579 | None:intergenic | 5.0% |
| !! | TAAAAAATATATAAATAAGA+TGG | + | chr2_1:68357689-68357708 | Msa0220160:intron | 5.0% |
| TCGAGCATGGAAATGGAGTG+TGG | + | chr2_1:68353004-68353023 | Msa0220160:CDS | 50.0% | |
| TGGAGTGTGGCAACAAGTGT+TGG | + | chr2_1:68353017-68353036 | Msa0220160:CDS | 50.0% | |
| !! | TGTGGCAACAAGTGTTGGAG+TGG | + | chr2_1:68353022-68353041 | Msa0220160:CDS | 50.0% |
| !! | AACAAGTGTTGGAGTGGTGG+AGG | + | chr2_1:68353028-68353047 | Msa0220160:CDS | 50.0% |
| !! | GTGGAGGCTTTGAAGGATCA+AGG | + | chr2_1:68353044-68353063 | Msa0220160:CDS | 50.0% |
| CTGTCATGTTCTTGAGCTGC+TGG | + | chr2_1:68353216-68353235 | Msa0220160:intron | 50.0% | |
| GTCATGTTCTTGAGCTGCTG+GGG | + | chr2_1:68353218-68353237 | Msa0220160:intron | 50.0% | |
| ATCTTGGATTGCCGTCGCTT+CGG | + | chr2_1:68354224-68354243 | Msa0220160:intron | 50.0% | |
| ATCATGTGTGCATCCCCCTT+CGG | - | chr2_1:68354384-68354403 | None:intergenic | 50.0% | |
| CGTAATGGCAAAGTGGTCCA+AGG | + | chr2_1:68354643-68354662 | Msa0220160:intron | 50.0% | |
| !!! | CAGGCTATGTCTACCGGTTT+TGG | - | chr2_1:68354694-68354713 | None:intergenic | 50.0% |
| AAACCGGTAGACATAGCCTG+TGG | + | chr2_1:68354694-68354713 | Msa0220160:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | - | chr2_1:68355060-68355079 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | - | chr2_1:68355059-68355078 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | chr2_1:68354903-68354922 | Msa0220160:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | chr2_1:68354909-68354928 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | + | chr2_1:68354967-68354986 | Msa0220160:intron | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr2_1:68355059-68355078 | Msa0220160:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr2_1:68355060-68355079 | Msa0220160:intron | 50.0% | |
| !! | TGCAAGTGTTGGAGTTGTGG+AGG | + | chr2_1:68355229-68355248 | Msa0220160:CDS | 50.0% |
| CAAAGACTCCTCTGCCTGTT+TGG | - | chr2_1:68355405-68355424 | None:intergenic | 50.0% | |
| AACAGGCAGAGGAGTCTTTG+AGG | + | chr2_1:68355405-68355424 | Msa0220160:CDS | 50.0% | |
| CTGTCATGTACTTGAGCTGC+TGG | + | chr2_1:68355429-68355448 | Msa0220160:CDS | 50.0% | |
| GTCATGTACTTGAGCTGCTG+GGG | + | chr2_1:68355431-68355450 | Msa0220160:CDS | 50.0% | |
| TTGACCTCCTTCCTCTTCTC+AGG | - | chr2_1:68356158-68356177 | None:intergenic | 50.0% | |
| AGAAGAGGAAGGAGGTCAAC+CGG | + | chr2_1:68356159-68356178 | Msa0220160:intron | 50.0% | |
| GAGCTCACAACTACTCACTG+CGG | - | chr2_1:68356438-68356457 | None:intergenic | 50.0% | |
| !! | CCAATCCGAGCAGGTTTTGA+TGG | - | chr2_1:68356540-68356559 | None:intergenic | 50.0% |
| CCATCAAAACCTGCTCGGAT+TGG | + | chr2_1:68356537-68356556 | Msa0220160:intron | 50.0% | |
| CTCGTGTTGAAAGCTCAAGG+TGG | + | chr2_1:68356652-68356671 | Msa0220160:intron | 50.0% | |
| GTGTTGAAAGCTCAAGGTGG+TGG | + | chr2_1:68356655-68356674 | Msa0220160:intron | 50.0% | |
| !! | CTTCAGTTTGATGGGCTAGG+AGG | - | chr2_1:68357197-68357216 | None:intergenic | 50.0% |
| CTCCTAGCCCATCAAACTGA+AGG | + | chr2_1:68357195-68357214 | Msa0220160:intron | 50.0% | |
| !! | CTCCTTCAGTTTGATGGGCT+AGG | - | chr2_1:68357200-68357219 | None:intergenic | 50.0% |
| AGACAGTGACAGTGGCAAGA+TGG | - | chr2_1:68357608-68357627 | None:intergenic | 50.0% | |
| !! | GGCAACAAGTGTTGGAGTGG+TGG | + | chr2_1:68353025-68353044 | Msa0220160:CDS | 55.0% |
| ! | TGGAGTGGTGGAGGCTTTGA+AGG | + | chr2_1:68353037-68353056 | Msa0220160:CDS | 55.0% |
| ! | TGGATGGTGGCTGCAAGTGT+TGG | + | chr2_1:68355218-68355237 | Msa0220160:CDS | 55.0% |
| !! | GGCTGCAAGTGTTGGAGTTG+TGG | + | chr2_1:68355226-68355245 | Msa0220160:CDS | 55.0% |
| GGATGACGAGAAGGCCAAAC+AGG | + | chr2_1:68355388-68355407 | Msa0220160:CDS | 55.0% | |
| CCTCCTTCCTCTTCTCAGGA+TGG | - | chr2_1:68356154-68356173 | None:intergenic | 55.0% | |
| CCATCCTGAGAAGAGGAAGG+AGG | + | chr2_1:68356151-68356170 | Msa0220160:intron | 55.0% | |
| GGTCAACCGGTGGAGAAGAA+TGG | + | chr2_1:68356172-68356191 | Msa0220160:intron | 55.0% | |
| TACTCACTGCGGCCACCATA+TGG | - | chr2_1:68356427-68356446 | None:intergenic | 55.0% | |
| AATGGGGTTCCAATCCGAGC+AGG | - | chr2_1:68356549-68356568 | None:intergenic | 55.0% | |
| TCTCTAAACCCACTCGAGGC+CGG | + | chr2_1:68356757-68356776 | Msa0220160:intron | 55.0% | |
| TGCAGGCAGTGTTGCAGTTG+TGG | + | chr2_1:68358018-68358037 | Msa0220160:CDS | 55.0% | |
| TCGAGGATGGACCGAAGCGA+CGG | - | chr2_1:68354238-68354257 | None:intergenic | 60.0% | |
| CGAGAAGGCCAAACAGGCAG+AGG | + | chr2_1:68355394-68355413 | Msa0220160:CDS | 60.0% | |
| AGAGGAAGGAGGTCAACCGG+TGG | + | chr2_1:68356162-68356181 | Msa0220160:intron | 60.0% | |
| TTTCCTTGCCGGCCTCGAGT+GGG | - | chr2_1:68356768-68356787 | None:intergenic | 60.0% | |
| ! | TTTTCCTTGCCGGCCTCGAG+TGG | - | chr2_1:68356769-68356788 | None:intergenic | 60.0% |
| AGCAGAGCATGGGTAGCTGC+AGG | + | chr2_1:68358001-68358020 | Msa0220160:CDS | 60.0% | |
| GTCGCTTCGGTCCATCCTCG+AGG | + | chr2_1:68354237-68354256 | Msa0220160:intron | 65.0% | |
| AAACCCACTCGAGGCCGGCA+AGG | + | chr2_1:68356762-68356781 | Msa0220160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 68352990 | 68358255 | 68352990 | ID=Msa0220160;Name=Msa0220160 |
| chr2_1 | mRNA | 68352990 | 68358255 | 68352990 | ID=Msa0220160-mRNA-1;Parent=Msa0220160;Name=Msa0220160-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0|0|3|0|248 |
| chr2_1 | exon | 68352990 | 68353222 | 68352990 | ID=Msa0220160-mRNA-1:exon:19336;Parent=Msa0220160-mRNA-1 |
| chr2_1 | exon | 68355211 | 68355452 | 68355211 | ID=Msa0220160-mRNA-1:exon:19337;Parent=Msa0220160-mRNA-1 |
| chr2_1 | exon | 68357984 | 68358255 | 68357984 | ID=Msa0220160-mRNA-1:exon:19338;Parent=Msa0220160-mRNA-1 |
| chr2_1 | CDS | 68352990 | 68353222 | 68352990 | ID=Msa0220160-mRNA-1:cds;Parent=Msa0220160-mRNA-1 |
| chr2_1 | CDS | 68355211 | 68355452 | 68355211 | ID=Msa0220160-mRNA-1:cds;Parent=Msa0220160-mRNA-1 |
| chr2_1 | CDS | 68357984 | 68358255 | 68357984 | ID=Msa0220160-mRNA-1:cds;Parent=Msa0220160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
