AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522540 MtrunA17_Chr3g0141091 88.131 337 15 4 1 312 1 337 0.0 568
Msa0522540 MtrunA17_Chr5g0411541 46.726 336 144 11 1 312 1 325 1.15e-75 234
Msa0522540 MtrunA17_Chr7g0252041 42.932 191 65 6 162 309 284 473 1.90e-34 130
Msa0522540 MtrunA17_Chr3g0131691 41.146 192 74 4 157 309 291 482 4.25e-33 127
Msa0522540 MtrunA17_Chr1g0211081 53.425 73 34 0 152 224 305 377 3.68e-18 84.7
Msa0522540 MtrunA17_Chr1g0185621 32.692 156 76 5 155 281 459 614 2.16e-14 73.6
Msa0522540 MtrunA17_Chr2g0298751 52.941 68 31 1 160 226 48 115 5.07e-14 70.5
Msa0522540 MtrunA17_Chr4g0028071 45.312 64 35 0 157 220 142 205 1.99e-12 67.0
Msa0522540 MtrunA17_Chr4g0049331 31.387 137 74 5 162 281 133 266 2.77e-12 66.2
Msa0522540 MtrunA17_Chr2g0320291 32.031 128 74 3 163 278 132 258 3.41e-12 66.2
Msa0522540 MtrunA17_Chr5g0400671 31.852 135 79 3 160 282 150 283 1.67e-11 64.3
Msa0522540 MtrunA17_Chr6g0468461 25.497 302 161 13 1 286 35 288 1.75e-11 64.3
Msa0522540 MtrunA17_Chr8g0346161 45.070 71 36 2 150 217 274 344 2.46e-11 64.3
Msa0522540 MtrunA17_Chr6g0468491 29.258 229 107 10 1 221 13 194 2.83e-11 63.5
Msa0522540 MtrunA17_Chr8g0365711 32.143 140 72 4 163 281 243 380 2.95e-11 63.9
Msa0522540 MtrunA17_Chr8g0366751 32.203 118 77 2 102 217 399 515 3.19e-11 63.9
Msa0522540 MtrunA17_Chr7g0275821 45.588 68 37 0 161 228 249 316 3.55e-11 63.5
Msa0522540 MtrunA17_Chr2g0280161 29.730 148 82 5 152 281 166 309 3.66e-11 63.2
Msa0522540 MtrunA17_Chr8g0346151 45.070 71 36 2 150 217 262 332 3.79e-11 63.5
Msa0522540 MtrunA17_Chr7g0260841 42.169 83 43 2 148 225 334 416 4.29e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522540 AT5G65640.1 59.903 207 56 5 131 312 147 351 1.55e-64 207
Msa0522540 AT5G10570.1 57.692 182 53 4 151 312 138 315 2.85e-57 187
Msa0522540 AT1G12860.1 42.473 186 67 5 162 309 265 448 1.45e-33 128
Msa0522540 AT1G12860.2 48.951 143 53 3 162 284 265 407 3.31e-32 124
Msa0522540 AT5G65640.2 62.602 123 36 3 131 245 147 267 2.05e-31 119
Msa0522540 AT3G26744.1 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0522540 AT3G26744.4 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0522540 AT3G26744.2 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0522540 AT3G26744.6 46.667 150 50 5 162 284 305 451 5.39e-29 116
Msa0522540 AT2G16910.1 35.484 155 64 4 163 281 313 467 6.60e-19 87.4
Msa0522540 AT4G29930.6 35.338 133 67 4 163 281 53 180 6.54e-15 73.2
Msa0522540 AT4G29930.2 34.921 126 74 4 163 281 53 177 7.82e-15 72.8
Msa0522540 AT4G29930.5 34.921 126 74 4 163 281 53 177 1.23e-14 72.4
Msa0522540 AT4G29930.4 50.000 66 32 1 163 227 53 118 2.25e-14 70.9
Msa0522540 AT4G29930.1 50.000 66 32 1 163 227 53 118 7.38e-14 70.5
Msa0522540 AT4G29930.3 50.000 66 32 1 163 227 53 118 9.08e-14 70.5
Msa0522540 AT4G29930.7 50.000 66 32 1 163 227 53 118 9.08e-14 70.5
Msa0522540 AT4G09820.1 32.824 131 76 2 153 280 352 473 7.56e-13 69.3
Msa0522540 AT2G46510.1 33.884 121 63 4 140 249 361 475 2.22e-12 67.8
Msa0522540 AT4G17880.1 33.117 154 83 6 151 286 401 552 7.98e-12 66.2
Msa0522540 AT4G00870.1 39.535 86 40 2 148 221 221 306 3.36e-11 63.9
Msa0522540 AT2G28160.1 40.909 66 39 0 155 220 122 187 4.24e-11 63.2
Msa0522540 AT2G22760.2 26.582 158 95 3 145 282 98 254 4.67e-11 62.8
Msa0522540 AT2G28160.2 40.909 66 39 0 155 220 122 187 4.85e-11 63.2
Msa0522540 AT2G22760.1 26.582 158 95 3 145 282 98 254 8.40e-11 62.4
Msa0522540 AT5G46760.1 42.466 73 40 1 151 221 400 472 8.91e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGATGAATATTATTTC+TGG 0.172796 3_4:-75774298 Msa0522540:three_prime_UTR
TGATGAAGAGCTTCAGAATT+TGG 0.194817 3_4:-75775829 Msa0522540:intron
TTGAAAACTACTGGCATTTC+AGG 0.202127 3_4:+75775768 None:intergenic
GTACCTACCTTGCTTATCTT+AGG 0.245588 3_4:+75775615 None:intergenic
ACAAAACCAATCAACATAAA+TGG 0.254034 3_4:+75774445 None:intergenic
GCAACAGGAATTGGAGAAAA+AGG 0.270835 3_4:-75774696 Msa0522540:intron
AGATTTCATTGAGGAATTAA+TGG 0.282846 3_4:-75776183 Msa0522540:CDS
TCTTCAACACCACAGATTCT+TGG 0.321672 3_4:-75775942 Msa0522540:CDS
AACACTTTCAATGAAATCTA+TGG 0.323772 3_4:-75775981 Msa0522540:CDS
ATACCCTGCACTTCTGAATA+AGG 0.328974 3_4:+75774643 None:intergenic
CATGATAAGAAAGTAAAGTT+AGG 0.333376 3_4:-75774200 Msa0522540:three_prime_UTR
TCTCTTTCGTCTTCTCCTTT+CGG 0.335778 3_4:+75775674 None:intergenic
CCTCCACATGCATACTCTTA+AGG 0.336767 3_4:+75774242 None:intergenic
GCCTAGTTGTTGCCATTGCC+AGG 0.337642 3_4:-75774267 Msa0522540:three_prime_UTR
CAAGAAGAGTTTGGAAGATA+TGG 0.342140 3_4:+75776050 None:intergenic
AAGTCTTCTTGAGAAATAAA+TGG 0.343736 3_4:+75775891 None:intergenic
GCTGCAAACAACATGTAAAA+TGG 0.348415 3_4:-75775805 Msa0522540:CDS
AATTGTGCCCAAGATTCATT+AGG 0.385379 3_4:+75774356 None:intergenic
TGTTGACTACAAGAAGAGTT+TGG 0.397391 3_4:+75776041 None:intergenic
CTCCACATGCATACTCTTAA+GGG 0.401366 3_4:+75774243 None:intergenic
GGCATTTCAGGTGATTGTAT+TGG 0.405729 3_4:+75775780 None:intergenic
AGATGTCCATTTATGTTGAT+TGG 0.406000 3_4:-75774451 Msa0522540:three_prime_UTR
GTCCTTGAAGTTTCTTCGAT+CGG 0.408164 3_4:+75775718 None:intergenic
TTGATCTTCTTCTCCCATCA+TGG 0.410222 3_4:+75775860 None:intergenic
TACCTACCTTGCTTATCTTA+GGG 0.413903 3_4:+75775616 None:intergenic
GGACTTGTCCTAATGAATCT+TGG 0.424820 3_4:-75774364 Msa0522540:three_prime_UTR
AGGGTTGAAATTTGTTGTGC+AGG 0.424911 3_4:-75775201 Msa0522540:CDS
ATTTGTTGTGCAGGGAAGCC+AGG 0.426657 3_4:-75775192 Msa0522540:CDS
ATGATAAGAAAGTAAAGTTA+GGG 0.436831 3_4:-75774199 Msa0522540:three_prime_UTR
GACTTGTCCTAATGAATCTT+GGG 0.440325 3_4:-75774363 Msa0522540:three_prime_UTR
TCATTGTTGTTATAGCTTTG+AGG 0.442557 3_4:+75776014 None:intergenic
ATTTGTAGTTTGAGGTAGAG+AGG 0.452354 3_4:-75775236 Msa0522540:intron
TTTCAACACTGGTAAGGGTA+TGG 0.466525 3_4:-75775751 Msa0522540:CDS
CAAGCCTTATTCAGAAGTGC+AGG 0.468092 3_4:-75774647 Msa0522540:CDS
AACCGATCGAAGAAACTTCA+AGG 0.484937 3_4:-75775720 Msa0522540:CDS
AATGACATGTCTATTATATG+AGG 0.487600 3_4:-75774525 Msa0522540:three_prime_UTR
TGTTGAAGATTCATCAAGTA+AGG 0.499336 3_4:+75775956 None:intergenic
ATGCATACTCTTAAGGGGCC+TGG 0.513251 3_4:+75774249 None:intergenic
TTACCAGTGTTGAAAACTAC+TGG 0.522074 3_4:+75775759 None:intergenic
ACTCTTAAGGGGCCTGGCAA+TGG 0.522647 3_4:+75774255 None:intergenic
GCCTGGCAATGGCAACAACT+AGG 0.523493 3_4:+75774266 None:intergenic
GACTTTCCACTGTCCATGAT+GGG 0.524863 3_4:-75775873 Msa0522540:CDS
GGGTTGAAATTTGTTGTGCA+GGG 0.525508 3_4:-75775200 Msa0522540:CDS
ATGTCTATTATATGAGGAAG+AGG 0.530706 3_4:-75774519 Msa0522540:three_prime_UTR
ACAGCCTTCGAAGAATCTAA+TGG 0.532414 3_4:-75775697 Msa0522540:CDS
ACATAGATGGAGTTCTATGA+TGG 0.535755 3_4:-75776206 None:intergenic
AGACTTTCCACTGTCCATGA+TGG 0.536479 3_4:-75775874 Msa0522540:CDS
CAATAGCCACAAGTGAACTT+AGG 0.545285 3_4:-75774577 Msa0522540:three_prime_UTR
ATGGACAGAACAGCTATACT+TGG 0.546390 3_4:-75775492 Msa0522540:CDS
AATATTATTTCTGGATGAGA+GGG 0.549410 3_4:-75774289 Msa0522540:three_prime_UTR
TTATTCAGAAGTGCAGGGTA+TGG 0.549665 3_4:-75774641 Msa0522540:CDS
TTTGAGGTAGAGAGGAGTGC+AGG 0.549939 3_4:-75775228 Msa0522540:CDS
TAGAGAGGAGTGCAGGCACA+AGG 0.551771 3_4:-75775221 Msa0522540:CDS
TAACACATTGTTGAATCTCA+AGG 0.553569 3_4:+75775130 None:intergenic
TTTGTTGTGCAGGGAAGCCA+GGG 0.555249 3_4:-75775191 Msa0522540:CDS
TTCAGAAGTGCAGGGTATGG+TGG 0.556553 3_4:-75774638 Msa0522540:CDS
AACTATCCTAAGTTCACTTG+TGG 0.559070 3_4:+75774571 None:intergenic
GAATATTATTTCTGGATGAG+AGG 0.565307 3_4:-75774290 Msa0522540:three_prime_UTR
GTAAACACATTGGAAGCATT+AGG 0.566951 3_4:-75775153 Msa0522540:CDS
TTTCTGATTAAGATTTCACT+TGG 0.582741 3_4:+75775366 None:intergenic
GAATATATAATATATAATAG+AGG 0.589766 3_4:-75774602 Msa0522540:three_prime_UTR
TCGGCCATTAGATTCTTCGA+AGG 0.598463 3_4:+75775693 None:intergenic
CGAAGAATCTAATGGCCGAA+AGG 0.611328 3_4:-75775689 Msa0522540:CDS
TGCTTCCAATGTGTTTACTG+TGG 0.617642 3_4:+75775158 None:intergenic
AGAGAGGAGTGCAGGCACAA+GGG 0.627694 3_4:-75775220 Msa0522540:CDS
CTTAATCAGAAATTCTCCAA+AGG 0.629828 3_4:-75775355 Msa0522540:intron
TCCACATGCATACTCTTAAG+GGG 0.631244 3_4:+75774244 None:intergenic
GCCCCTTAAGAGTATGCATG+TGG 0.632747 3_4:-75774245 Msa0522540:three_prime_UTR
TAGTATGAACCAAGAATCTG+TGG 0.634286 3_4:+75775933 None:intergenic
TCTTCTCCCATCATGGACAG+TGG 0.637946 3_4:+75775867 None:intergenic
CTATGATGGAGATTTCATTG+AGG 0.638365 3_4:-75776192 Msa0522540:CDS
CCTTAAGAGTATGCATGTGG+AGG 0.642450 3_4:-75774242 Msa0522540:three_prime_UTR
AATTGTCCCTAAGATAAGCA+AGG 0.652852 3_4:-75775622 Msa0522540:intron
AAGCCTTATTCAGAAGTGCA+GGG 0.666202 3_4:-75774646 Msa0522540:CDS
GCTATCCACAGTAAACACAT+TGG 0.673367 3_4:-75775163 Msa0522540:CDS
TTGCTCGTAGCATTGAAAGA+CGG 0.697294 3_4:+75775643 None:intergenic
ACTGTGGATAGCAACAACCC+TGG 0.706149 3_4:+75775174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATATAATATATAATAG+AGG - chr3_4:75775688-75775707 Msa0522540:CDS 10.0%
!! GAATATATAATATATAATAG+AGG - chr3_4:75775688-75775707 Msa0522540:CDS 10.0%
!! AGTATAACTAACAAAATATT+AGG + chr3_4:75775335-75775354 None:intergenic 15.0%
!! AGATATATAAATTCATCAAA+AGG - chr3_4:75775381-75775400 Msa0522540:CDS 15.0%
!! AGTATAACTAACAAAATATT+AGG + chr3_4:75775335-75775354 None:intergenic 15.0%
!! AGATATATAAATTCATCAAA+AGG - chr3_4:75775381-75775400 Msa0522540:CDS 15.0%
!! TTCAACAAAACAAATTAGAT+CGG + chr3_4:75774755-75774774 None:intergenic 20.0%
!!! ATCTAATTTGTTTTGTTGAA+TGG - chr3_4:75774755-75774774 Msa0522540:intron 20.0%
!! AACACAGATTAATTTCAAAA+GGG + chr3_4:75774977-75774996 None:intergenic 20.0%
!! CACACAGAAATAAAAATAAT+TGG + chr3_4:75775007-75775026 None:intergenic 20.0%
!!! GGAGTAATATTAGAATTTTT+TGG - chr3_4:75775473-75775492 Msa0522540:CDS 20.0%
!! GAAAGACAATATATACTATT+AGG + chr3_4:75775537-75775556 None:intergenic 20.0%
!! ATATATTGTCTTTCTTAGTT+AGG - chr3_4:75775543-75775562 Msa0522540:intron 20.0%
!!! TAGCTATTTTTGATAGAAAT+TGG + chr3_4:75775897-75775916 None:intergenic 20.0%
!! AATTTCTATCAAAAATAGCT+AGG - chr3_4:75775896-75775915 Msa0522540:CDS 20.0%
!! ATTTCTATCAAAAATAGCTA+GGG - chr3_4:75775897-75775916 Msa0522540:CDS 20.0%
!!! ATGAACGTTTTATATATGAT+TGG + chr3_4:75775961-75775980 None:intergenic 20.0%
!! ATGATAAGAAAGTAAAGTTA+GGG - chr3_4:75776091-75776110 Msa0522540:CDS 20.0%
!! TTCAACAAAACAAATTAGAT+CGG + chr3_4:75774755-75774774 None:intergenic 20.0%
!!! ATCTAATTTGTTTTGTTGAA+TGG - chr3_4:75774755-75774774 Msa0522540:intron 20.0%
!! AACACAGATTAATTTCAAAA+GGG + chr3_4:75774977-75774996 None:intergenic 20.0%
!! CACACAGAAATAAAAATAAT+TGG + chr3_4:75775007-75775026 None:intergenic 20.0%
!!! GGAGTAATATTAGAATTTTT+TGG - chr3_4:75775473-75775492 Msa0522540:CDS 20.0%
!! GAAAGACAATATATACTATT+AGG + chr3_4:75775537-75775556 None:intergenic 20.0%
!! ATATATTGTCTTTCTTAGTT+AGG - chr3_4:75775543-75775562 Msa0522540:intron 20.0%
!!! TAGCTATTTTTGATAGAAAT+TGG + chr3_4:75775897-75775916 None:intergenic 20.0%
!! AATTTCTATCAAAAATAGCT+AGG - chr3_4:75775896-75775915 Msa0522540:CDS 20.0%
!! ATTTCTATCAAAAATAGCTA+GGG - chr3_4:75775897-75775916 Msa0522540:CDS 20.0%
!!! ATGAACGTTTTATATATGAT+TGG + chr3_4:75775961-75775980 None:intergenic 20.0%
!! ATGATAAGAAAGTAAAGTTA+GGG - chr3_4:75776091-75776110 Msa0522540:CDS 20.0%
! AGATTTCATTGAGGAATTAA+TGG - chr3_4:75774107-75774126 Msa0522540:three_prime_UTR 25.0%
!!! AATTGATTTTCTTCATGACA+TGG + chr3_4:75774165-75774184 None:intergenic 25.0%
! AACACTTTCAATGAAATCTA+TGG - chr3_4:75774309-75774328 Msa0522540:three_prime_UTR 25.0%
! AAGTCTTCTTGAGAAATAAA+TGG + chr3_4:75774402-75774421 None:intergenic 25.0%
! CAATAAATATTTGTGACAGA+TGG - chr3_4:75774779-75774798 Msa0522540:intron 25.0%
! TTTCTGATTAAGATTTCACT+TGG + chr3_4:75774927-75774946 None:intergenic 25.0%
! CAACACAGATTAATTTCAAA+AGG + chr3_4:75774978-75774997 None:intergenic 25.0%
! TTGAAATTAATCTGTGTTGA+AGG - chr3_4:75774979-75774998 Msa0522540:intron 25.0%
! GTTACTAAATTTGTAGTTTG+AGG - chr3_4:75775046-75775065 Msa0522540:intron 25.0%
! TTAGTTACTTAATACTTCCT+CGG - chr3_4:75775232-75775251 Msa0522540:intron 25.0%
! GAATTAAAGTCATTTACACA+TGG + chr3_4:75775432-75775451 None:intergenic 25.0%
! CTTTAATTCGACAGTTAAAA+AGG - chr3_4:75775443-75775462 Msa0522540:CDS 25.0%
! AAATTCTAATATTACTCCCT+CGG + chr3_4:75775471-75775490 None:intergenic 25.0%
!!! AGGATAGTTTTTTCTTCATT+AGG - chr3_4:75775733-75775752 Msa0522540:CDS 25.0%
! AATGACATGTCTATTATATG+AGG - chr3_4:75775765-75775784 Msa0522540:CDS 25.0%
! ACAAAACCAATCAACATAAA+TGG + chr3_4:75775848-75775867 None:intergenic 25.0%
! GTGAAGATGAATATTATTTC+TGG - chr3_4:75775992-75776011 Msa0522540:CDS 25.0%
!!! AATATTATTTCTGGATGAGA+GGG - chr3_4:75776001-75776020 Msa0522540:CDS 25.0%
! CATGATAAGAAAGTAAAGTT+AGG - chr3_4:75776090-75776109 Msa0522540:CDS 25.0%
! AGATTTCATTGAGGAATTAA+TGG - chr3_4:75774107-75774126 Msa0522540:three_prime_UTR 25.0%
!!! AATTGATTTTCTTCATGACA+TGG + chr3_4:75774165-75774184 None:intergenic 25.0%
! AACACTTTCAATGAAATCTA+TGG - chr3_4:75774309-75774328 Msa0522540:three_prime_UTR 25.0%
! AAGTCTTCTTGAGAAATAAA+TGG + chr3_4:75774402-75774421 None:intergenic 25.0%
! CAATAAATATTTGTGACAGA+TGG - chr3_4:75774779-75774798 Msa0522540:intron 25.0%
! TTTCTGATTAAGATTTCACT+TGG + chr3_4:75774927-75774946 None:intergenic 25.0%
! CAACACAGATTAATTTCAAA+AGG + chr3_4:75774978-75774997 None:intergenic 25.0%
! TTGAAATTAATCTGTGTTGA+AGG - chr3_4:75774979-75774998 Msa0522540:intron 25.0%
! GTTACTAAATTTGTAGTTTG+AGG - chr3_4:75775046-75775065 Msa0522540:intron 25.0%
! TTAGTTACTTAATACTTCCT+CGG - chr3_4:75775232-75775251 Msa0522540:intron 25.0%
! GAATTAAAGTCATTTACACA+TGG + chr3_4:75775432-75775451 None:intergenic 25.0%
! CTTTAATTCGACAGTTAAAA+AGG - chr3_4:75775443-75775462 Msa0522540:CDS 25.0%
! AAATTCTAATATTACTCCCT+CGG + chr3_4:75775471-75775490 None:intergenic 25.0%
!!! AGGATAGTTTTTTCTTCATT+AGG - chr3_4:75775733-75775752 Msa0522540:CDS 25.0%
! AATGACATGTCTATTATATG+AGG - chr3_4:75775765-75775784 Msa0522540:CDS 25.0%
! ACAAAACCAATCAACATAAA+TGG + chr3_4:75775848-75775867 None:intergenic 25.0%
! GTGAAGATGAATATTATTTC+TGG - chr3_4:75775992-75776011 Msa0522540:CDS 25.0%
!!! AATATTATTTCTGGATGAGA+GGG - chr3_4:75776001-75776020 Msa0522540:CDS 25.0%
! CATGATAAGAAAGTAAAGTT+AGG - chr3_4:75776090-75776109 Msa0522540:CDS 25.0%
! ATTTTCTTCATGACATGGAT+TGG + chr3_4:75774160-75774179 None:intergenic 30.0%
! TCATTGTTGTTATAGCTTTG+AGG + chr3_4:75774279-75774298 None:intergenic 30.0%
TGTTGAAGATTCATCAAGTA+AGG + chr3_4:75774337-75774356 None:intergenic 30.0%
CTTAATCAGAAATTCTCCAA+AGG - chr3_4:75774935-75774954 Msa0522540:intron 30.0%
! TCAGTGAAATTTTGTACCTT+TGG + chr3_4:75774954-75774973 None:intergenic 30.0%
TAACACATTGTTGAATCTCA+AGG + chr3_4:75775163-75775182 None:intergenic 30.0%
TTTCAATGATTTCACAATGC+AGG - chr3_4:75775190-75775209 Msa0522540:CDS 30.0%
!! TTTCTTGTTTGTTATGCAAC+AGG - chr3_4:75775579-75775598 Msa0522540:intron 30.0%
ATGTCTATTATATGAGGAAG+AGG - chr3_4:75775771-75775790 Msa0522540:CDS 30.0%
AGATGTCCATTTATGTTGAT+TGG - chr3_4:75775839-75775858 Msa0522540:intron 30.0%
!! GAATATTATTTCTGGATGAG+AGG - chr3_4:75776000-75776019 Msa0522540:CDS 30.0%
! ATTTTCTTCATGACATGGAT+TGG + chr3_4:75774160-75774179 None:intergenic 30.0%
! TCATTGTTGTTATAGCTTTG+AGG + chr3_4:75774279-75774298 None:intergenic 30.0%
TGTTGAAGATTCATCAAGTA+AGG + chr3_4:75774337-75774356 None:intergenic 30.0%
CTTAATCAGAAATTCTCCAA+AGG - chr3_4:75774935-75774954 Msa0522540:intron 30.0%
! TCAGTGAAATTTTGTACCTT+TGG + chr3_4:75774954-75774973 None:intergenic 30.0%
TAACACATTGTTGAATCTCA+AGG + chr3_4:75775163-75775182 None:intergenic 30.0%
TTTCAATGATTTCACAATGC+AGG - chr3_4:75775190-75775209 Msa0522540:CDS 30.0%
!! TTTCTTGTTTGTTATGCAAC+AGG - chr3_4:75775579-75775598 Msa0522540:intron 30.0%
ATGTCTATTATATGAGGAAG+AGG - chr3_4:75775771-75775790 Msa0522540:CDS 30.0%
AGATGTCCATTTATGTTGAT+TGG - chr3_4:75775839-75775858 Msa0522540:intron 30.0%
!! GAATATTATTTCTGGATGAG+AGG - chr3_4:75776000-75776019 Msa0522540:CDS 30.0%
! CTATGATGGAGATTTCATTG+AGG - chr3_4:75774098-75774117 Msa0522540:three_prime_UTR 35.0%
CAAGAAGAGTTTGGAAGATA+TGG + chr3_4:75774243-75774262 None:intergenic 35.0%
! TGTTGACTACAAGAAGAGTT+TGG + chr3_4:75774252-75774271 None:intergenic 35.0%
TAGTATGAACCAAGAATCTG+TGG + chr3_4:75774360-75774379 None:intergenic 35.0%
TGATGAAGAGCTTCAGAATT+TGG - chr3_4:75774461-75774480 Msa0522540:three_prime_UTR 35.0%
GCTGCAAACAACATGTAAAA+TGG - chr3_4:75774485-75774504 Msa0522540:three_prime_UTR 35.0%
TTGAAAACTACTGGCATTTC+AGG + chr3_4:75774525-75774544 None:intergenic 35.0%
! TTACCAGTGTTGAAAACTAC+TGG + chr3_4:75774534-75774553 None:intergenic 35.0%
! AGTAGTTTTCAACACTGGTA+AGG - chr3_4:75774533-75774552 Msa0522540:three_prime_UTR 35.0%
! GTAGTTTTCAACACTGGTAA+GGG - chr3_4:75774534-75774553 Msa0522540:three_prime_UTR 35.0%
AATTGTCCCTAAGATAAGCA+AGG - chr3_4:75774668-75774687 Msa0522540:CDS 35.0%
TACCTACCTTGCTTATCTTA+GGG + chr3_4:75774677-75774696 None:intergenic 35.0%
! ATTTGTAGTTTGAGGTAGAG+AGG - chr3_4:75775054-75775073 Msa0522540:intron 35.0%
!! GTAAACACATTGGAAGCATT+AGG - chr3_4:75775137-75775156 Msa0522540:CDS 35.0%
CGACATTTAAAAAGTAACCG+AGG + chr3_4:75775252-75775271 None:intergenic 35.0%
!! GTTTGTTATGCAACAGGAAT+TGG - chr3_4:75775585-75775604 Msa0522540:intron 35.0%
AACTATCCTAAGTTCACTTG+TGG + chr3_4:75775722-75775741 None:intergenic 35.0%
GACTTGTCCTAATGAATCTT+GGG - chr3_4:75775927-75775946 Msa0522540:CDS 35.0%
AATTGTGCCCAAGATTCATT+AGG + chr3_4:75775937-75775956 None:intergenic 35.0%
! CTATGATGGAGATTTCATTG+AGG - chr3_4:75774098-75774117 Msa0522540:three_prime_UTR 35.0%
CAAGAAGAGTTTGGAAGATA+TGG + chr3_4:75774243-75774262 None:intergenic 35.0%
! TGTTGACTACAAGAAGAGTT+TGG + chr3_4:75774252-75774271 None:intergenic 35.0%
TAGTATGAACCAAGAATCTG+TGG + chr3_4:75774360-75774379 None:intergenic 35.0%
TGATGAAGAGCTTCAGAATT+TGG - chr3_4:75774461-75774480 Msa0522540:three_prime_UTR 35.0%
GCTGCAAACAACATGTAAAA+TGG - chr3_4:75774485-75774504 Msa0522540:three_prime_UTR 35.0%
TTGAAAACTACTGGCATTTC+AGG + chr3_4:75774525-75774544 None:intergenic 35.0%
! TTACCAGTGTTGAAAACTAC+TGG + chr3_4:75774534-75774553 None:intergenic 35.0%
! AGTAGTTTTCAACACTGGTA+AGG - chr3_4:75774533-75774552 Msa0522540:three_prime_UTR 35.0%
! GTAGTTTTCAACACTGGTAA+GGG - chr3_4:75774534-75774553 Msa0522540:three_prime_UTR 35.0%
AATTGTCCCTAAGATAAGCA+AGG - chr3_4:75774668-75774687 Msa0522540:CDS 35.0%
TACCTACCTTGCTTATCTTA+GGG + chr3_4:75774677-75774696 None:intergenic 35.0%
! ATTTGTAGTTTGAGGTAGAG+AGG - chr3_4:75775054-75775073 Msa0522540:intron 35.0%
!! GTAAACACATTGGAAGCATT+AGG - chr3_4:75775137-75775156 Msa0522540:CDS 35.0%
CGACATTTAAAAAGTAACCG+AGG + chr3_4:75775252-75775271 None:intergenic 35.0%
!! GTTTGTTATGCAACAGGAAT+TGG - chr3_4:75775585-75775604 Msa0522540:intron 35.0%
AACTATCCTAAGTTCACTTG+TGG + chr3_4:75775722-75775741 None:intergenic 35.0%
GACTTGTCCTAATGAATCTT+GGG - chr3_4:75775927-75775946 Msa0522540:CDS 35.0%
AATTGTGCCCAAGATTCATT+AGG + chr3_4:75775937-75775956 None:intergenic 35.0%
TCTTCAACACCACAGATTCT+TGG - chr3_4:75774348-75774367 Msa0522540:three_prime_UTR 40.0%
TTGATCTTCTTCTCCCATCA+TGG + chr3_4:75774433-75774452 None:intergenic 40.0%
! GGCATTTCAGGTGATTGTAT+TGG + chr3_4:75774513-75774532 None:intergenic 40.0%
! ATGCCAGTAGTTTTCAACAC+TGG - chr3_4:75774528-75774547 Msa0522540:three_prime_UTR 40.0%
TTTCAACACTGGTAAGGGTA+TGG - chr3_4:75774539-75774558 Msa0522540:three_prime_UTR 40.0%
AACCGATCGAAGAAACTTCA+AGG - chr3_4:75774570-75774589 Msa0522540:three_prime_UTR 40.0%
GTCCTTGAAGTTTCTTCGAT+CGG + chr3_4:75774575-75774594 None:intergenic 40.0%
ACAGCCTTCGAAGAATCTAA+TGG - chr3_4:75774593-75774612 Msa0522540:three_prime_UTR 40.0%
TCTCTTTCGTCTTCTCCTTT+CGG + chr3_4:75774619-75774638 None:intergenic 40.0%
! TTGCTCGTAGCATTGAAAGA+CGG + chr3_4:75774650-75774669 None:intergenic 40.0%
GTACCTACCTTGCTTATCTT+AGG + chr3_4:75774678-75774697 None:intergenic 40.0%
ATGGACAGAACAGCTATACT+TGG - chr3_4:75774798-75774817 Msa0522540:intron 40.0%
!! AGGGTTGAAATTTGTTGTGC+AGG - chr3_4:75775089-75775108 Msa0522540:intron 40.0%
!! GGGTTGAAATTTGTTGTGCA+GGG - chr3_4:75775090-75775109 Msa0522540:intron 40.0%
GCTATCCACAGTAAACACAT+TGG - chr3_4:75775127-75775146 Msa0522540:intron 40.0%
TGCTTCCAATGTGTTTACTG+TGG + chr3_4:75775135-75775154 None:intergenic 40.0%
GCAACAGGAATTGGAGAAAA+AGG - chr3_4:75775594-75775613 Msa0522540:intron 40.0%
!! AAGCCTTATTCAGAAGTGCA+GGG - chr3_4:75775644-75775663 Msa0522540:CDS 40.0%
ATACCCTGCACTTCTGAATA+AGG + chr3_4:75775650-75775669 None:intergenic 40.0%
! TTATTCAGAAGTGCAGGGTA+TGG - chr3_4:75775649-75775668 Msa0522540:CDS 40.0%
CAATAGCCACAAGTGAACTT+AGG - chr3_4:75775713-75775732 Msa0522540:CDS 40.0%
CAAAAATAGCTAGGGTGTGA+TGG - chr3_4:75775905-75775924 Msa0522540:CDS 40.0%
GGACTTGTCCTAATGAATCT+TGG - chr3_4:75775926-75775945 Msa0522540:CDS 40.0%
TCCACATGCATACTCTTAAG+GGG + chr3_4:75776049-75776068 None:intergenic 40.0%
CTCCACATGCATACTCTTAA+GGG + chr3_4:75776050-75776069 None:intergenic 40.0%
TCTTCAACACCACAGATTCT+TGG - chr3_4:75774348-75774367 Msa0522540:three_prime_UTR 40.0%
TTGATCTTCTTCTCCCATCA+TGG + chr3_4:75774433-75774452 None:intergenic 40.0%
! GGCATTTCAGGTGATTGTAT+TGG + chr3_4:75774513-75774532 None:intergenic 40.0%
! ATGCCAGTAGTTTTCAACAC+TGG - chr3_4:75774528-75774547 Msa0522540:three_prime_UTR 40.0%
TTTCAACACTGGTAAGGGTA+TGG - chr3_4:75774539-75774558 Msa0522540:three_prime_UTR 40.0%
AACCGATCGAAGAAACTTCA+AGG - chr3_4:75774570-75774589 Msa0522540:three_prime_UTR 40.0%
GTCCTTGAAGTTTCTTCGAT+CGG + chr3_4:75774575-75774594 None:intergenic 40.0%
ACAGCCTTCGAAGAATCTAA+TGG - chr3_4:75774593-75774612 Msa0522540:three_prime_UTR 40.0%
TCTCTTTCGTCTTCTCCTTT+CGG + chr3_4:75774619-75774638 None:intergenic 40.0%
! TTGCTCGTAGCATTGAAAGA+CGG + chr3_4:75774650-75774669 None:intergenic 40.0%
GTACCTACCTTGCTTATCTT+AGG + chr3_4:75774678-75774697 None:intergenic 40.0%
ATGGACAGAACAGCTATACT+TGG - chr3_4:75774798-75774817 Msa0522540:intron 40.0%
!! AGGGTTGAAATTTGTTGTGC+AGG - chr3_4:75775089-75775108 Msa0522540:intron 40.0%
!! GGGTTGAAATTTGTTGTGCA+GGG - chr3_4:75775090-75775109 Msa0522540:intron 40.0%
GCTATCCACAGTAAACACAT+TGG - chr3_4:75775127-75775146 Msa0522540:intron 40.0%
TGCTTCCAATGTGTTTACTG+TGG + chr3_4:75775135-75775154 None:intergenic 40.0%
GCAACAGGAATTGGAGAAAA+AGG - chr3_4:75775594-75775613 Msa0522540:intron 40.0%
!! AAGCCTTATTCAGAAGTGCA+GGG - chr3_4:75775644-75775663 Msa0522540:CDS 40.0%
ATACCCTGCACTTCTGAATA+AGG + chr3_4:75775650-75775669 None:intergenic 40.0%
! TTATTCAGAAGTGCAGGGTA+TGG - chr3_4:75775649-75775668 Msa0522540:CDS 40.0%
CAATAGCCACAAGTGAACTT+AGG - chr3_4:75775713-75775732 Msa0522540:CDS 40.0%
CAAAAATAGCTAGGGTGTGA+TGG - chr3_4:75775905-75775924 Msa0522540:CDS 40.0%
GGACTTGTCCTAATGAATCT+TGG - chr3_4:75775926-75775945 Msa0522540:CDS 40.0%
TCCACATGCATACTCTTAAG+GGG + chr3_4:75776049-75776068 None:intergenic 40.0%
CTCCACATGCATACTCTTAA+GGG + chr3_4:75776050-75776069 None:intergenic 40.0%
AGACTTTCCACTGTCCATGA+TGG - chr3_4:75774416-75774435 Msa0522540:three_prime_UTR 45.0%
GACTTTCCACTGTCCATGAT+GGG - chr3_4:75774417-75774436 Msa0522540:three_prime_UTR 45.0%
TCGGCCATTAGATTCTTCGA+AGG + chr3_4:75774600-75774619 None:intergenic 45.0%
CGAAGAATCTAATGGCCGAA+AGG - chr3_4:75774601-75774620 Msa0522540:three_prime_UTR 45.0%
GTCCCTAAGATAAGCAAGGT+AGG - chr3_4:75774672-75774691 Msa0522540:CDS 45.0%
GACAGTTAAAAAGGAGCCGA+GGG - chr3_4:75775452-75775471 Msa0522540:CDS 45.0%
!! CAAGCCTTATTCAGAAGTGC+AGG - chr3_4:75775643-75775662 Msa0522540:CDS 45.0%
CCTCCACATGCATACTCTTA+AGG + chr3_4:75776051-75776070 None:intergenic 45.0%
! CCTTAAGAGTATGCATGTGG+AGG - chr3_4:75776048-75776067 Msa0522540:CDS 45.0%
AGACTTTCCACTGTCCATGA+TGG - chr3_4:75774416-75774435 Msa0522540:three_prime_UTR 45.0%
GACTTTCCACTGTCCATGAT+GGG - chr3_4:75774417-75774436 Msa0522540:three_prime_UTR 45.0%
TCGGCCATTAGATTCTTCGA+AGG + chr3_4:75774600-75774619 None:intergenic 45.0%
CGAAGAATCTAATGGCCGAA+AGG - chr3_4:75774601-75774620 Msa0522540:three_prime_UTR 45.0%
GTCCCTAAGATAAGCAAGGT+AGG - chr3_4:75774672-75774691 Msa0522540:CDS 45.0%
GACAGTTAAAAAGGAGCCGA+GGG - chr3_4:75775452-75775471 Msa0522540:CDS 45.0%
!! CAAGCCTTATTCAGAAGTGC+AGG - chr3_4:75775643-75775662 Msa0522540:CDS 45.0%
CCTCCACATGCATACTCTTA+AGG + chr3_4:75776051-75776070 None:intergenic 45.0%
! CCTTAAGAGTATGCATGTGG+AGG - chr3_4:75776048-75776067 Msa0522540:CDS 45.0%
TCTTCTCCCATCATGGACAG+TGG + chr3_4:75774426-75774445 None:intergenic 50.0%
! TTTGAGGTAGAGAGGAGTGC+AGG - chr3_4:75775062-75775081 Msa0522540:intron 50.0%
!! ATTTGTTGTGCAGGGAAGCC+AGG - chr3_4:75775098-75775117 Msa0522540:intron 50.0%
! TTTGTTGTGCAGGGAAGCCA+GGG - chr3_4:75775099-75775118 Msa0522540:intron 50.0%
ACTGTGGATAGCAACAACCC+TGG + chr3_4:75775119-75775138 None:intergenic 50.0%
CACAATGCAGGCTTCTTGCT+CGG - chr3_4:75775202-75775221 Msa0522540:CDS 50.0%
CGACAGTTAAAAAGGAGCCG+AGG - chr3_4:75775451-75775470 Msa0522540:CDS 50.0%
! TTCAGAAGTGCAGGGTATGG+TGG - chr3_4:75775652-75775671 Msa0522540:CDS 50.0%
ATGCATACTCTTAAGGGGCC+TGG + chr3_4:75776044-75776063 None:intergenic 50.0%
! GCCCCTTAAGAGTATGCATG+TGG - chr3_4:75776045-75776064 Msa0522540:intron 50.0%
TCTTCTCCCATCATGGACAG+TGG + chr3_4:75774426-75774445 None:intergenic 50.0%
! TTTGAGGTAGAGAGGAGTGC+AGG - chr3_4:75775062-75775081 Msa0522540:intron 50.0%
!! ATTTGTTGTGCAGGGAAGCC+AGG - chr3_4:75775098-75775117 Msa0522540:intron 50.0%
! TTTGTTGTGCAGGGAAGCCA+GGG - chr3_4:75775099-75775118 Msa0522540:intron 50.0%
ACTGTGGATAGCAACAACCC+TGG + chr3_4:75775119-75775138 None:intergenic 50.0%
CACAATGCAGGCTTCTTGCT+CGG - chr3_4:75775202-75775221 Msa0522540:CDS 50.0%
CGACAGTTAAAAAGGAGCCG+AGG - chr3_4:75775451-75775470 Msa0522540:CDS 50.0%
! TTCAGAAGTGCAGGGTATGG+TGG - chr3_4:75775652-75775671 Msa0522540:CDS 50.0%
ATGCATACTCTTAAGGGGCC+TGG + chr3_4:75776044-75776063 None:intergenic 50.0%
! GCCCCTTAAGAGTATGCATG+TGG - chr3_4:75776045-75776064 Msa0522540:intron 50.0%
! TAGAGAGGAGTGCAGGCACA+AGG - chr3_4:75775069-75775088 Msa0522540:intron 55.0%
! AGAGAGGAGTGCAGGCACAA+GGG - chr3_4:75775070-75775089 Msa0522540:intron 55.0%
AATGCAGGCTTCTTGCTCGG+AGG - chr3_4:75775205-75775224 Msa0522540:CDS 55.0%
GCCTAGTTGTTGCCATTGCC+AGG - chr3_4:75776023-75776042 Msa0522540:intron 55.0%
GCCTGGCAATGGCAACAACT+AGG + chr3_4:75776027-75776046 None:intergenic 55.0%
ACTCTTAAGGGGCCTGGCAA+TGG + chr3_4:75776038-75776057 None:intergenic 55.0%
! TAGAGAGGAGTGCAGGCACA+AGG - chr3_4:75775069-75775088 Msa0522540:intron 55.0%
! AGAGAGGAGTGCAGGCACAA+GGG - chr3_4:75775070-75775089 Msa0522540:intron 55.0%
AATGCAGGCTTCTTGCTCGG+AGG - chr3_4:75775205-75775224 Msa0522540:CDS 55.0%
GCCTAGTTGTTGCCATTGCC+AGG - chr3_4:75776023-75776042 Msa0522540:intron 55.0%
GCCTGGCAATGGCAACAACT+AGG + chr3_4:75776027-75776046 None:intergenic 55.0%
ACTCTTAAGGGGCCTGGCAA+TGG + chr3_4:75776038-75776057 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 75774090 75776222 75774090 ID=Msa0522540;Name=Msa0522540
chr3_4 mRNA 75774090 75776222 75774090 ID=Msa0522540-mRNA-1;Parent=Msa0522540;Name=Msa0522540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.4|0.33|1|0.4|0.33|6|535|312
chr3_4 exon 75774090 75774711 75774090 ID=Msa0522540-mRNA-1:exon:21733;Parent=Msa0522540-mRNA-1
chr3_4 exon 75775134 75775250 75775134 ID=Msa0522540-mRNA-1:exon:21732;Parent=Msa0522540-mRNA-1
chr3_4 exon 75775356 75775514 75775356 ID=Msa0522540-mRNA-1:exon:21731;Parent=Msa0522540-mRNA-1
chr3_4 exon 75775623 75775843 75775623 ID=Msa0522540-mRNA-1:exon:21730;Parent=Msa0522540-mRNA-1
chr3_4 exon 75775859 75776038 75775859 ID=Msa0522540-mRNA-1:exon:21729;Parent=Msa0522540-mRNA-1
chr3_4 exon 75776048 75776222 75776048 ID=Msa0522540-mRNA-1:exon:21728;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75776048 75776222 75776048 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75775859 75776038 75775859 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75775623 75775843 75775623 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75775356 75775514 75775356 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75775134 75775250 75775134 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 CDS 75774625 75774711 75774625 ID=Msa0522540-mRNA-1:cds;Parent=Msa0522540-mRNA-1
chr3_4 three_prime_UTR 75774090 75774624 75774090 ID=Msa0522540-mRNA-1:three_prime_utr;Parent=Msa0522540-mRNA-1
Gene Sequence

>Msa0522540

ATGGAGTTCTATGATGGAGATTTCATTGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACCAATCCATGTCATGAAGAAAATCAATTCTTCTCATCAACAAGTAACTTGAGCTTTGATAACTGTTTTGATCAAAGCTCTTTACCATATCTTCCAAACTCTTCTTGTATTCCTCAAAGCTATAACAACAATGATCACTACAGTAACACTTTCAATGAAATCTATGGTTCCTTACTTGATGAATCTTCAACACCACAGATTCTTGGTTCATACTATAATAATAGTATTGACACTCCATTTATTTCTCAAGAAGACTTTCCACTGTCCATGATGGGAGAAGAAGATCAAAAGCTTCAGAATTTGGAGCTGCAAACAACATGTAAAATGGAGCCAATACAATCACCTGAAATGCCAGTAGTTTTCAACACTGGTAAGGGTATGGAAAGAAAGAACCGATCGAAGAAACTTCAAGGACAGCCTTCGAAGAATCTAATGGCCGAAAGGAGAAGACGAAAGAGATTAAATGACCGTCTTTCAATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTTTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGATGTCAAACCAAGTGAAATCTTAATCAGAAATTCTCCAAAGTTTGAGGTAGAGAGGAGTGCAGGCACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGCTATCCACAGTAAACACATTGGAAGCATTAGGCCTTGAGATTCAACAATGTGAATTGGAGAAAAAGGCAATGCTAAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGATGTTTGTGA

Protein sequence

>Msa0522540

MEFYDGDFIEELMALRRETYEITNPCHEENQFFSSTSNLSFDNCFDQSSLPYLPNSSCIPQSYNNNDHYSNTFNEIYGSLLDESSTPQILGSYYNNSIDTPFISQEDFPLSMMGEEDQKLQNLELQTTCKMEPIQSPEMPVVFNTGKGMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPSEILIRNSPKFEVERSAGTRVEICCAGKPGLLLSTVNTLEALGLEIQQCELEKKAMLSSEDIKQALFRSAGYGGRCL*