AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384590 MtrunA17_Chr3g0141091 88.131 337 15 4 1 312 1 337 0.0 568
Msa0384590 MtrunA17_Chr5g0411541 46.726 336 144 11 1 312 1 325 1.15e-75 234
Msa0384590 MtrunA17_Chr7g0252041 42.932 191 65 6 162 309 284 473 1.90e-34 130
Msa0384590 MtrunA17_Chr3g0131691 41.146 192 74 4 157 309 291 482 4.25e-33 127
Msa0384590 MtrunA17_Chr1g0211081 53.425 73 34 0 152 224 305 377 3.68e-18 84.7
Msa0384590 MtrunA17_Chr1g0185621 32.692 156 76 5 155 281 459 614 2.16e-14 73.6
Msa0384590 MtrunA17_Chr2g0298751 52.941 68 31 1 160 226 48 115 5.07e-14 70.5
Msa0384590 MtrunA17_Chr4g0028071 45.312 64 35 0 157 220 142 205 1.99e-12 67.0
Msa0384590 MtrunA17_Chr4g0049331 31.387 137 74 5 162 281 133 266 2.77e-12 66.2
Msa0384590 MtrunA17_Chr2g0320291 32.031 128 74 3 163 278 132 258 3.41e-12 66.2
Msa0384590 MtrunA17_Chr5g0400671 31.852 135 79 3 160 282 150 283 1.67e-11 64.3
Msa0384590 MtrunA17_Chr6g0468461 25.497 302 161 13 1 286 35 288 1.75e-11 64.3
Msa0384590 MtrunA17_Chr8g0346161 45.070 71 36 2 150 217 274 344 2.46e-11 64.3
Msa0384590 MtrunA17_Chr6g0468491 29.258 229 107 10 1 221 13 194 2.83e-11 63.5
Msa0384590 MtrunA17_Chr8g0365711 32.143 140 72 4 163 281 243 380 2.95e-11 63.9
Msa0384590 MtrunA17_Chr8g0366751 32.203 118 77 2 102 217 399 515 3.19e-11 63.9
Msa0384590 MtrunA17_Chr7g0275821 45.588 68 37 0 161 228 249 316 3.55e-11 63.5
Msa0384590 MtrunA17_Chr2g0280161 29.730 148 82 5 152 281 166 309 3.66e-11 63.2
Msa0384590 MtrunA17_Chr8g0346151 45.070 71 36 2 150 217 262 332 3.79e-11 63.5
Msa0384590 MtrunA17_Chr7g0260841 42.169 83 43 2 148 225 334 416 4.29e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384590 AT5G65640.1 59.903 207 56 5 131 312 147 351 1.55e-64 207
Msa0384590 AT5G10570.1 57.692 182 53 4 151 312 138 315 2.85e-57 187
Msa0384590 AT1G12860.1 42.473 186 67 5 162 309 265 448 1.45e-33 128
Msa0384590 AT1G12860.2 48.951 143 53 3 162 284 265 407 3.31e-32 124
Msa0384590 AT5G65640.2 62.602 123 36 3 131 245 147 267 2.05e-31 119
Msa0384590 AT3G26744.1 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0384590 AT3G26744.4 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0384590 AT3G26744.2 40.838 191 67 6 162 309 305 492 1.55e-30 120
Msa0384590 AT3G26744.6 46.667 150 50 5 162 284 305 451 5.39e-29 116
Msa0384590 AT2G16910.1 35.484 155 64 4 163 281 313 467 6.60e-19 87.4
Msa0384590 AT4G29930.6 35.338 133 67 4 163 281 53 180 6.54e-15 73.2
Msa0384590 AT4G29930.2 34.921 126 74 4 163 281 53 177 7.82e-15 72.8
Msa0384590 AT4G29930.5 34.921 126 74 4 163 281 53 177 1.23e-14 72.4
Msa0384590 AT4G29930.4 50.000 66 32 1 163 227 53 118 2.25e-14 70.9
Msa0384590 AT4G29930.1 50.000 66 32 1 163 227 53 118 7.38e-14 70.5
Msa0384590 AT4G29930.3 50.000 66 32 1 163 227 53 118 9.08e-14 70.5
Msa0384590 AT4G29930.7 50.000 66 32 1 163 227 53 118 9.08e-14 70.5
Msa0384590 AT4G09820.1 32.824 131 76 2 153 280 352 473 7.56e-13 69.3
Msa0384590 AT2G46510.1 33.884 121 63 4 140 249 361 475 2.22e-12 67.8
Msa0384590 AT4G17880.1 33.117 154 83 6 151 286 401 552 7.98e-12 66.2
Msa0384590 AT4G00870.1 39.535 86 40 2 148 221 221 306 3.36e-11 63.9
Msa0384590 AT2G28160.1 40.909 66 39 0 155 220 122 187 4.24e-11 63.2
Msa0384590 AT2G22760.2 26.582 158 95 3 145 282 98 254 4.67e-11 62.8
Msa0384590 AT2G28160.2 40.909 66 39 0 155 220 122 187 4.85e-11 63.2
Msa0384590 AT2G22760.1 26.582 158 95 3 145 282 98 254 8.40e-11 62.4
Msa0384590 AT5G46760.1 42.466 73 40 1 151 221 400 472 8.91e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGATGAATATTATTTC+TGG 0.172796 3_1:-87834538 Msa0384590:three_prime_UTR
TGATGAAGAGCTTCAGAATT+TGG 0.194817 3_1:-87836047 Msa0384590:intron
TTGAAAACTACTGGCATTTC+AGG 0.202127 3_1:+87835986 None:intergenic
GTACCTACCTTGCTTATCTT+AGG 0.245588 3_1:+87835833 None:intergenic
ACAAAACCAATCAACATAAA+TGG 0.254034 3_1:+87834685 None:intergenic
GCAACAGGAATTGGAGAAAA+AGG 0.270835 3_1:-87834933 Msa0384590:intron
AGATTTCATTGAGGAATTAA+TGG 0.282846 3_1:-87836401 Msa0384590:CDS
TCTTCAACACCACAGATTCT+TGG 0.321672 3_1:-87836160 Msa0384590:CDS
AACACTTTCAATGAAATCTA+TGG 0.323772 3_1:-87836199 Msa0384590:CDS
ATACCCTGCACTTCTGAATA+AGG 0.328974 3_1:+87834880 None:intergenic
CATGATAAGAAAGTAAAGTT+AGG 0.333376 3_1:-87834440 Msa0384590:three_prime_UTR
TCTCTTTCGTCTTCTCCTTT+CGG 0.335778 3_1:+87835892 None:intergenic
CCTCCACATGCATACTCTTA+AGG 0.336767 3_1:+87834482 None:intergenic
GCCTAGTTGTTGCCATTGCC+AGG 0.337642 3_1:-87834507 Msa0384590:three_prime_UTR
CAAGAAGAGTTTGGAAGATA+TGG 0.342140 3_1:+87836268 None:intergenic
AAGTCTTCTTGAGAAATAAA+TGG 0.343736 3_1:+87836109 None:intergenic
GCTGCAAACAACATGTAAAA+TGG 0.348415 3_1:-87836023 Msa0384590:CDS
AATTGTGCCCAAGATTCATT+AGG 0.385379 3_1:+87834596 None:intergenic
TGTTGACTACAAGAAGAGTT+TGG 0.397391 3_1:+87836259 None:intergenic
CTCCACATGCATACTCTTAA+GGG 0.401366 3_1:+87834483 None:intergenic
GGCATTTCAGGTGATTGTAT+TGG 0.405729 3_1:+87835998 None:intergenic
AGATGTCCATTTATGTTGAT+TGG 0.406000 3_1:-87834691 Msa0384590:three_prime_UTR
GTCCTTGAAGTTTCTTCGAT+CGG 0.408164 3_1:+87835936 None:intergenic
TTGATCTTCTTCTCCCATCA+TGG 0.410222 3_1:+87836078 None:intergenic
TACCTACCTTGCTTATCTTA+GGG 0.413903 3_1:+87835834 None:intergenic
GGACTTGTCCTAATGAATCT+TGG 0.424820 3_1:-87834604 Msa0384590:three_prime_UTR
AGGGTTGAAATTTGTTGTGC+AGG 0.424911 3_1:-87835440 Msa0384590:CDS
ATTTGTTGTGCAGGGAAGCC+AGG 0.426657 3_1:-87835431 Msa0384590:CDS
ATGATAAGAAAGTAAAGTTA+GGG 0.436831 3_1:-87834439 Msa0384590:three_prime_UTR
GACTTGTCCTAATGAATCTT+GGG 0.440325 3_1:-87834603 Msa0384590:three_prime_UTR
TCATTGTTGTTATAGCTTTG+AGG 0.442557 3_1:+87836232 None:intergenic
ATTTGTAGTTTGAGGTAGAG+AGG 0.452354 3_1:-87835475 Msa0384590:intron
TTTCAACACTGGTAAGGGTA+TGG 0.466525 3_1:-87835969 Msa0384590:CDS
CAAGCCTTATTCAGAAGTGC+AGG 0.468092 3_1:-87834884 Msa0384590:CDS
AACCGATCGAAGAAACTTCA+AGG 0.484937 3_1:-87835938 Msa0384590:CDS
AATGACATGTCTATTATATG+AGG 0.487600 3_1:-87834762 Msa0384590:three_prime_UTR
TGTTGAAGATTCATCAAGTA+AGG 0.499336 3_1:+87836174 None:intergenic
ATGCATACTCTTAAGGGGCC+TGG 0.513251 3_1:+87834489 None:intergenic
TTACCAGTGTTGAAAACTAC+TGG 0.522074 3_1:+87835977 None:intergenic
ACTCTTAAGGGGCCTGGCAA+TGG 0.522647 3_1:+87834495 None:intergenic
GCCTGGCAATGGCAACAACT+AGG 0.523493 3_1:+87834506 None:intergenic
GACTTTCCACTGTCCATGAT+GGG 0.524863 3_1:-87836091 Msa0384590:CDS
GGGTTGAAATTTGTTGTGCA+GGG 0.525508 3_1:-87835439 Msa0384590:CDS
ATGTCTATTATATGAGGAAG+AGG 0.530706 3_1:-87834756 Msa0384590:three_prime_UTR
ACAGCCTTCGAAGAATCTAA+TGG 0.532414 3_1:-87835915 Msa0384590:CDS
ACATAGATGGAGTTCTATGA+TGG 0.535755 3_1:-87836424 None:intergenic
AGACTTTCCACTGTCCATGA+TGG 0.536479 3_1:-87836092 Msa0384590:CDS
CAATAGCCACAAGTGAACTT+AGG 0.545285 3_1:-87834814 Msa0384590:three_prime_UTR
ATGGACAGAACAGCTATACT+TGG 0.546390 3_1:-87835731 Msa0384590:CDS
AATATTATTTCTGGATGAGA+GGG 0.549410 3_1:-87834529 Msa0384590:three_prime_UTR
TTATTCAGAAGTGCAGGGTA+TGG 0.549665 3_1:-87834878 Msa0384590:CDS
TTTGAGGTAGAGAGGAGTGC+AGG 0.549939 3_1:-87835467 Msa0384590:CDS
TAGAGAGGAGTGCAGGCACA+AGG 0.551771 3_1:-87835460 Msa0384590:CDS
TAACACATTGTTGAATCTCA+AGG 0.553569 3_1:+87835369 None:intergenic
TTTGTTGTGCAGGGAAGCCA+GGG 0.555249 3_1:-87835430 Msa0384590:CDS
TTCAGAAGTGCAGGGTATGG+TGG 0.556553 3_1:-87834875 Msa0384590:CDS
AACTATCCTAAGTTCACTTG+TGG 0.559070 3_1:+87834808 None:intergenic
GAATATTATTTCTGGATGAG+AGG 0.565307 3_1:-87834530 Msa0384590:three_prime_UTR
GTAAACACATTGGAAGCATT+AGG 0.566951 3_1:-87835392 Msa0384590:CDS
TTTCTGATTAAGATTTCACT+TGG 0.582741 3_1:+87835605 None:intergenic
GAATATATAATATATAATAG+AGG 0.589766 3_1:-87834839 Msa0384590:three_prime_UTR
TCGGCCATTAGATTCTTCGA+AGG 0.598463 3_1:+87835911 None:intergenic
CGAAGAATCTAATGGCCGAA+AGG 0.611328 3_1:-87835907 Msa0384590:CDS
TGCTTCCAATGTGTTTACTG+TGG 0.617642 3_1:+87835397 None:intergenic
AGAGAGGAGTGCAGGCACAA+GGG 0.627694 3_1:-87835459 Msa0384590:CDS
CTTAATCAGAAATTCTCCAA+AGG 0.629828 3_1:-87835594 Msa0384590:intron
TCCACATGCATACTCTTAAG+GGG 0.631244 3_1:+87834484 None:intergenic
GCCCCTTAAGAGTATGCATG+TGG 0.632747 3_1:-87834485 Msa0384590:three_prime_UTR
TAGTATGAACCAAGAATCTG+TGG 0.634286 3_1:+87836151 None:intergenic
TCTTCTCCCATCATGGACAG+TGG 0.637946 3_1:+87836085 None:intergenic
CTATGATGGAGATTTCATTG+AGG 0.638365 3_1:-87836410 Msa0384590:CDS
CCTTAAGAGTATGCATGTGG+AGG 0.642450 3_1:-87834482 Msa0384590:three_prime_UTR
AATTGTCCCTAAGATAAGCA+AGG 0.652852 3_1:-87835840 Msa0384590:intron
AAGCCTTATTCAGAAGTGCA+GGG 0.666202 3_1:-87834883 Msa0384590:CDS
GCTATCCACAGTAAACACAT+TGG 0.673367 3_1:-87835402 Msa0384590:CDS
TTGCTCGTAGCATTGAAAGA+CGG 0.697294 3_1:+87835861 None:intergenic
ACTGTGGATAGCAACAACCC+TGG 0.706149 3_1:+87835413 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATATAATATATAATAG+AGG - chr3_1:87835909-87835928 Msa0384590:CDS 10.0%
!! GAATATATAATATATAATAG+AGG - chr3_1:87835909-87835928 Msa0384590:CDS 10.0%
!! AGATATATAAATTCATCAAA+AGG - chr3_1:87835600-87835619 Msa0384590:CDS 15.0%
!! AGATATATAAATTCATCAAA+AGG - chr3_1:87835600-87835619 Msa0384590:CDS 15.0%
!! GTCACAAATATTTATTAGAT+CGG + chr3_1:87834995-87835014 None:intergenic 20.0%
!! TAATAAATATTTGTGACAGA+TGG - chr3_1:87834998-87835017 Msa0384590:intron 20.0%
!! AACACAGATTAATTTCAAAA+GGG + chr3_1:87835196-87835215 None:intergenic 20.0%
!! CACACAGAAATAAAAATAAT+TGG + chr3_1:87835226-87835245 None:intergenic 20.0%
!! AGTATCACTAACAAAATATT+AGG + chr3_1:87835554-87835573 None:intergenic 20.0%
!!! GGAGTAATATTAGAATTTTT+TGG - chr3_1:87835694-87835713 Msa0384590:CDS 20.0%
!! GAAAGACAATATATACTATT+AGG + chr3_1:87835758-87835777 None:intergenic 20.0%
!! ATATATTGTCTTTCTTAGTT+AGG - chr3_1:87835764-87835783 Msa0384590:intron 20.0%
!!! ATGAACGTTTTATATATGAT+TGG + chr3_1:87836179-87836198 None:intergenic 20.0%
!! ATGATAAGAAAGTAAAGTTA+GGG - chr3_1:87836309-87836328 Msa0384590:CDS 20.0%
!! GTCACAAATATTTATTAGAT+CGG + chr3_1:87834995-87835014 None:intergenic 20.0%
!! TAATAAATATTTGTGACAGA+TGG - chr3_1:87834998-87835017 Msa0384590:intron 20.0%
!! AACACAGATTAATTTCAAAA+GGG + chr3_1:87835196-87835215 None:intergenic 20.0%
!! CACACAGAAATAAAAATAAT+TGG + chr3_1:87835226-87835245 None:intergenic 20.0%
!! AGTATCACTAACAAAATATT+AGG + chr3_1:87835554-87835573 None:intergenic 20.0%
!!! GGAGTAATATTAGAATTTTT+TGG - chr3_1:87835694-87835713 Msa0384590:CDS 20.0%
!! GAAAGACAATATATACTATT+AGG + chr3_1:87835758-87835777 None:intergenic 20.0%
!! ATATATTGTCTTTCTTAGTT+AGG - chr3_1:87835764-87835783 Msa0384590:intron 20.0%
!!! ATGAACGTTTTATATATGAT+TGG + chr3_1:87836179-87836198 None:intergenic 20.0%
!! ATGATAAGAAAGTAAAGTTA+GGG - chr3_1:87836309-87836328 Msa0384590:CDS 20.0%
! AGATTTCATTGAGGAATTAA+TGG - chr3_1:87834347-87834366 Msa0384590:three_prime_UTR 25.0%
!!! AATTGATTTTCTTCATGACA+TGG + chr3_1:87834405-87834424 None:intergenic 25.0%
! AACACTTTCAATGAAATCTA+TGG - chr3_1:87834549-87834568 Msa0384590:three_prime_UTR 25.0%
! AAGTCTTCTTGAGAAATAAA+TGG + chr3_1:87834642-87834661 None:intergenic 25.0%
! TTTCTGATTAAGATTTCACT+TGG + chr3_1:87835146-87835165 None:intergenic 25.0%
! CAACACAGATTAATTTCAAA+AGG + chr3_1:87835197-87835216 None:intergenic 25.0%
! TTGAAATTAATCTGTGTTGA+AGG - chr3_1:87835198-87835217 Msa0384590:intron 25.0%
! GTTACTAAATTTGTAGTTTG+AGG - chr3_1:87835265-87835284 Msa0384590:intron 25.0%
! TTAGTTACTTAATACTTCCT+CGG - chr3_1:87835451-87835470 Msa0384590:CDS 25.0%
! GAATTAAAGTCATTTACACA+TGG + chr3_1:87835653-87835672 None:intergenic 25.0%
! CTTTAATTCGACAGTTAAAA+AGG - chr3_1:87835664-87835683 Msa0384590:CDS 25.0%
! AAATTCTAATATTACTCCCT+CGG + chr3_1:87835692-87835711 None:intergenic 25.0%
!!! AGGATAGTTTTTTCTTCATT+AGG - chr3_1:87835954-87835973 Msa0384590:CDS 25.0%
! AATGACATGTCTATTATATG+AGG - chr3_1:87835986-87836005 Msa0384590:CDS 25.0%
! ACAAAACCAATCAACATAAA+TGG + chr3_1:87836066-87836085 None:intergenic 25.0%
!!! TAGCTATTTTTGATAGGAAT+TGG + chr3_1:87836115-87836134 None:intergenic 25.0%
! AATTCCTATCAAAAATAGCT+AGG - chr3_1:87836114-87836133 Msa0384590:CDS 25.0%
! ATTCCTATCAAAAATAGCTA+GGG - chr3_1:87836115-87836134 Msa0384590:CDS 25.0%
! GTGAAGATGAATATTATTTC+TGG - chr3_1:87836210-87836229 Msa0384590:CDS 25.0%
!!! AATATTATTTCTGGATGAGA+GGG - chr3_1:87836219-87836238 Msa0384590:CDS 25.0%
! CATGATAAGAAAGTAAAGTT+AGG - chr3_1:87836308-87836327 Msa0384590:CDS 25.0%
! AGATTTCATTGAGGAATTAA+TGG - chr3_1:87834347-87834366 Msa0384590:three_prime_UTR 25.0%
!!! AATTGATTTTCTTCATGACA+TGG + chr3_1:87834405-87834424 None:intergenic 25.0%
! AACACTTTCAATGAAATCTA+TGG - chr3_1:87834549-87834568 Msa0384590:three_prime_UTR 25.0%
! AAGTCTTCTTGAGAAATAAA+TGG + chr3_1:87834642-87834661 None:intergenic 25.0%
! TTTCTGATTAAGATTTCACT+TGG + chr3_1:87835146-87835165 None:intergenic 25.0%
! CAACACAGATTAATTTCAAA+AGG + chr3_1:87835197-87835216 None:intergenic 25.0%
! TTGAAATTAATCTGTGTTGA+AGG - chr3_1:87835198-87835217 Msa0384590:intron 25.0%
! GTTACTAAATTTGTAGTTTG+AGG - chr3_1:87835265-87835284 Msa0384590:intron 25.0%
! TTAGTTACTTAATACTTCCT+CGG - chr3_1:87835451-87835470 Msa0384590:CDS 25.0%
! GAATTAAAGTCATTTACACA+TGG + chr3_1:87835653-87835672 None:intergenic 25.0%
! CTTTAATTCGACAGTTAAAA+AGG - chr3_1:87835664-87835683 Msa0384590:CDS 25.0%
! AAATTCTAATATTACTCCCT+CGG + chr3_1:87835692-87835711 None:intergenic 25.0%
!!! AGGATAGTTTTTTCTTCATT+AGG - chr3_1:87835954-87835973 Msa0384590:CDS 25.0%
! AATGACATGTCTATTATATG+AGG - chr3_1:87835986-87836005 Msa0384590:CDS 25.0%
! ACAAAACCAATCAACATAAA+TGG + chr3_1:87836066-87836085 None:intergenic 25.0%
!!! TAGCTATTTTTGATAGGAAT+TGG + chr3_1:87836115-87836134 None:intergenic 25.0%
! AATTCCTATCAAAAATAGCT+AGG - chr3_1:87836114-87836133 Msa0384590:CDS 25.0%
! ATTCCTATCAAAAATAGCTA+GGG - chr3_1:87836115-87836134 Msa0384590:CDS 25.0%
! GTGAAGATGAATATTATTTC+TGG - chr3_1:87836210-87836229 Msa0384590:CDS 25.0%
!!! AATATTATTTCTGGATGAGA+GGG - chr3_1:87836219-87836238 Msa0384590:CDS 25.0%
! CATGATAAGAAAGTAAAGTT+AGG - chr3_1:87836308-87836327 Msa0384590:CDS 25.0%
! ATTTTCTTCATGACATGGAT+TGG + chr3_1:87834400-87834419 None:intergenic 30.0%
! TCATTGTTGTTATAGCTTTG+AGG + chr3_1:87834519-87834538 None:intergenic 30.0%
TGTTGAAGATTCATCAAGTA+AGG + chr3_1:87834577-87834596 None:intergenic 30.0%
CTTAATCAGAAATTCTCCAA+AGG - chr3_1:87835154-87835173 Msa0384590:intron 30.0%
! TCAGTGAAATTTTGTACCTT+TGG + chr3_1:87835173-87835192 None:intergenic 30.0%
TAACACATTGTTGAATCTCA+AGG + chr3_1:87835382-87835401 None:intergenic 30.0%
TTTCAATGATTTCACAATGC+AGG - chr3_1:87835409-87835428 Msa0384590:CDS 30.0%
!! TTTCTTGTTTGTTATGCAAC+AGG - chr3_1:87835800-87835819 Msa0384590:intron 30.0%
ATGTCTATTATATGAGGAAG+AGG - chr3_1:87835992-87836011 Msa0384590:CDS 30.0%
AGATGTCCATTTATGTTGAT+TGG - chr3_1:87836057-87836076 Msa0384590:intron 30.0%
!! GAATATTATTTCTGGATGAG+AGG - chr3_1:87836218-87836237 Msa0384590:CDS 30.0%
! ATTTTCTTCATGACATGGAT+TGG + chr3_1:87834400-87834419 None:intergenic 30.0%
! TCATTGTTGTTATAGCTTTG+AGG + chr3_1:87834519-87834538 None:intergenic 30.0%
TGTTGAAGATTCATCAAGTA+AGG + chr3_1:87834577-87834596 None:intergenic 30.0%
CTTAATCAGAAATTCTCCAA+AGG - chr3_1:87835154-87835173 Msa0384590:intron 30.0%
! TCAGTGAAATTTTGTACCTT+TGG + chr3_1:87835173-87835192 None:intergenic 30.0%
TAACACATTGTTGAATCTCA+AGG + chr3_1:87835382-87835401 None:intergenic 30.0%
TTTCAATGATTTCACAATGC+AGG - chr3_1:87835409-87835428 Msa0384590:CDS 30.0%
!! TTTCTTGTTTGTTATGCAAC+AGG - chr3_1:87835800-87835819 Msa0384590:intron 30.0%
ATGTCTATTATATGAGGAAG+AGG - chr3_1:87835992-87836011 Msa0384590:CDS 30.0%
AGATGTCCATTTATGTTGAT+TGG - chr3_1:87836057-87836076 Msa0384590:intron 30.0%
!! GAATATTATTTCTGGATGAG+AGG - chr3_1:87836218-87836237 Msa0384590:CDS 30.0%
! CTATGATGGAGATTTCATTG+AGG - chr3_1:87834338-87834357 Msa0384590:three_prime_UTR 35.0%
CAAGAAGAGTTTGGAAGATA+TGG + chr3_1:87834483-87834502 None:intergenic 35.0%
! TGTTGACTACAAGAAGAGTT+TGG + chr3_1:87834492-87834511 None:intergenic 35.0%
TAGTATGAACCAAGAATCTG+TGG + chr3_1:87834600-87834619 None:intergenic 35.0%
TGATGAAGAGCTTCAGAATT+TGG - chr3_1:87834701-87834720 Msa0384590:three_prime_UTR 35.0%
GCTGCAAACAACATGTAAAA+TGG - chr3_1:87834725-87834744 Msa0384590:three_prime_UTR 35.0%
TTGAAAACTACTGGCATTTC+AGG + chr3_1:87834765-87834784 None:intergenic 35.0%
! TTACCAGTGTTGAAAACTAC+TGG + chr3_1:87834774-87834793 None:intergenic 35.0%
! AGTAGTTTTCAACACTGGTA+AGG - chr3_1:87834773-87834792 Msa0384590:three_prime_UTR 35.0%
! GTAGTTTTCAACACTGGTAA+GGG - chr3_1:87834774-87834793 Msa0384590:three_prime_UTR 35.0%
AATTGTCCCTAAGATAAGCA+AGG - chr3_1:87834908-87834927 Msa0384590:CDS 35.0%
TACCTACCTTGCTTATCTTA+GGG + chr3_1:87834917-87834936 None:intergenic 35.0%
! ATTTGTAGTTTGAGGTAGAG+AGG - chr3_1:87835273-87835292 Msa0384590:intron 35.0%
!! GTAAACACATTGGAAGCATT+AGG - chr3_1:87835356-87835375 Msa0384590:intron 35.0%
CGACATTTAAAAAGTAACCG+AGG + chr3_1:87835471-87835490 None:intergenic 35.0%
!! GTTTGTTATGCAACAGGAAT+TGG - chr3_1:87835806-87835825 Msa0384590:intron 35.0%
AACTATCCTAAGTTCACTTG+TGG + chr3_1:87835943-87835962 None:intergenic 35.0%
!!! ACACCCTAGCTATTTTTGAT+AGG + chr3_1:87836121-87836140 None:intergenic 35.0%
GACTTGTCCTAATGAATCTT+GGG - chr3_1:87836145-87836164 Msa0384590:CDS 35.0%
AATTGTGCCCAAGATTCATT+AGG + chr3_1:87836155-87836174 None:intergenic 35.0%
! CTATGATGGAGATTTCATTG+AGG - chr3_1:87834338-87834357 Msa0384590:three_prime_UTR 35.0%
CAAGAAGAGTTTGGAAGATA+TGG + chr3_1:87834483-87834502 None:intergenic 35.0%
! TGTTGACTACAAGAAGAGTT+TGG + chr3_1:87834492-87834511 None:intergenic 35.0%
TAGTATGAACCAAGAATCTG+TGG + chr3_1:87834600-87834619 None:intergenic 35.0%
TGATGAAGAGCTTCAGAATT+TGG - chr3_1:87834701-87834720 Msa0384590:three_prime_UTR 35.0%
GCTGCAAACAACATGTAAAA+TGG - chr3_1:87834725-87834744 Msa0384590:three_prime_UTR 35.0%
TTGAAAACTACTGGCATTTC+AGG + chr3_1:87834765-87834784 None:intergenic 35.0%
! TTACCAGTGTTGAAAACTAC+TGG + chr3_1:87834774-87834793 None:intergenic 35.0%
! AGTAGTTTTCAACACTGGTA+AGG - chr3_1:87834773-87834792 Msa0384590:three_prime_UTR 35.0%
! GTAGTTTTCAACACTGGTAA+GGG - chr3_1:87834774-87834793 Msa0384590:three_prime_UTR 35.0%
AATTGTCCCTAAGATAAGCA+AGG - chr3_1:87834908-87834927 Msa0384590:CDS 35.0%
TACCTACCTTGCTTATCTTA+GGG + chr3_1:87834917-87834936 None:intergenic 35.0%
! ATTTGTAGTTTGAGGTAGAG+AGG - chr3_1:87835273-87835292 Msa0384590:intron 35.0%
!! GTAAACACATTGGAAGCATT+AGG - chr3_1:87835356-87835375 Msa0384590:intron 35.0%
CGACATTTAAAAAGTAACCG+AGG + chr3_1:87835471-87835490 None:intergenic 35.0%
!! GTTTGTTATGCAACAGGAAT+TGG - chr3_1:87835806-87835825 Msa0384590:intron 35.0%
AACTATCCTAAGTTCACTTG+TGG + chr3_1:87835943-87835962 None:intergenic 35.0%
!!! ACACCCTAGCTATTTTTGAT+AGG + chr3_1:87836121-87836140 None:intergenic 35.0%
GACTTGTCCTAATGAATCTT+GGG - chr3_1:87836145-87836164 Msa0384590:CDS 35.0%
AATTGTGCCCAAGATTCATT+AGG + chr3_1:87836155-87836174 None:intergenic 35.0%
TCTTCAACACCACAGATTCT+TGG - chr3_1:87834588-87834607 Msa0384590:three_prime_UTR 40.0%
TTGATCTTCTTCTCCCATCA+TGG + chr3_1:87834673-87834692 None:intergenic 40.0%
! GGCATTTCAGGTGATTGTAT+TGG + chr3_1:87834753-87834772 None:intergenic 40.0%
! ATGCCAGTAGTTTTCAACAC+TGG - chr3_1:87834768-87834787 Msa0384590:three_prime_UTR 40.0%
TTTCAACACTGGTAAGGGTA+TGG - chr3_1:87834779-87834798 Msa0384590:three_prime_UTR 40.0%
AACCGATCGAAGAAACTTCA+AGG - chr3_1:87834810-87834829 Msa0384590:three_prime_UTR 40.0%
GTCCTTGAAGTTTCTTCGAT+CGG + chr3_1:87834815-87834834 None:intergenic 40.0%
ACAGCCTTCGAAGAATCTAA+TGG - chr3_1:87834833-87834852 Msa0384590:three_prime_UTR 40.0%
TCTCTTTCGTCTTCTCCTTT+CGG + chr3_1:87834859-87834878 None:intergenic 40.0%
! TTGCTCGTAGCATTGAAAGA+CGG + chr3_1:87834890-87834909 None:intergenic 40.0%
GTACCTACCTTGCTTATCTT+AGG + chr3_1:87834918-87834937 None:intergenic 40.0%
ATGGACAGAACAGCTATACT+TGG - chr3_1:87835017-87835036 Msa0384590:intron 40.0%
!! AGGGTTGAAATTTGTTGTGC+AGG - chr3_1:87835308-87835327 Msa0384590:intron 40.0%
!! GGGTTGAAATTTGTTGTGCA+GGG - chr3_1:87835309-87835328 Msa0384590:intron 40.0%
GCTATCCACAGTAAACACAT+TGG - chr3_1:87835346-87835365 Msa0384590:intron 40.0%
TGCTTCCAATGTGTTTACTG+TGG + chr3_1:87835354-87835373 None:intergenic 40.0%
GCAACAGGAATTGGAGAAAA+AGG - chr3_1:87835815-87835834 Msa0384590:intron 40.0%
!! AAGCCTTATTCAGAAGTGCA+GGG - chr3_1:87835865-87835884 Msa0384590:CDS 40.0%
ATACCCTGCACTTCTGAATA+AGG + chr3_1:87835871-87835890 None:intergenic 40.0%
! TTATTCAGAAGTGCAGGGTA+TGG - chr3_1:87835870-87835889 Msa0384590:CDS 40.0%
CAATAGCCACAAGTGAACTT+AGG - chr3_1:87835934-87835953 Msa0384590:CDS 40.0%
CAAAAATAGCTAGGGTGTGA+TGG - chr3_1:87836123-87836142 Msa0384590:CDS 40.0%
GGACTTGTCCTAATGAATCT+TGG - chr3_1:87836144-87836163 Msa0384590:CDS 40.0%
TCCACATGCATACTCTTAAG+GGG + chr3_1:87836267-87836286 None:intergenic 40.0%
CTCCACATGCATACTCTTAA+GGG + chr3_1:87836268-87836287 None:intergenic 40.0%
TCTTCAACACCACAGATTCT+TGG - chr3_1:87834588-87834607 Msa0384590:three_prime_UTR 40.0%
TTGATCTTCTTCTCCCATCA+TGG + chr3_1:87834673-87834692 None:intergenic 40.0%
! GGCATTTCAGGTGATTGTAT+TGG + chr3_1:87834753-87834772 None:intergenic 40.0%
! ATGCCAGTAGTTTTCAACAC+TGG - chr3_1:87834768-87834787 Msa0384590:three_prime_UTR 40.0%
TTTCAACACTGGTAAGGGTA+TGG - chr3_1:87834779-87834798 Msa0384590:three_prime_UTR 40.0%
AACCGATCGAAGAAACTTCA+AGG - chr3_1:87834810-87834829 Msa0384590:three_prime_UTR 40.0%
GTCCTTGAAGTTTCTTCGAT+CGG + chr3_1:87834815-87834834 None:intergenic 40.0%
ACAGCCTTCGAAGAATCTAA+TGG - chr3_1:87834833-87834852 Msa0384590:three_prime_UTR 40.0%
TCTCTTTCGTCTTCTCCTTT+CGG + chr3_1:87834859-87834878 None:intergenic 40.0%
! TTGCTCGTAGCATTGAAAGA+CGG + chr3_1:87834890-87834909 None:intergenic 40.0%
GTACCTACCTTGCTTATCTT+AGG + chr3_1:87834918-87834937 None:intergenic 40.0%
ATGGACAGAACAGCTATACT+TGG - chr3_1:87835017-87835036 Msa0384590:intron 40.0%
!! AGGGTTGAAATTTGTTGTGC+AGG - chr3_1:87835308-87835327 Msa0384590:intron 40.0%
!! GGGTTGAAATTTGTTGTGCA+GGG - chr3_1:87835309-87835328 Msa0384590:intron 40.0%
GCTATCCACAGTAAACACAT+TGG - chr3_1:87835346-87835365 Msa0384590:intron 40.0%
TGCTTCCAATGTGTTTACTG+TGG + chr3_1:87835354-87835373 None:intergenic 40.0%
GCAACAGGAATTGGAGAAAA+AGG - chr3_1:87835815-87835834 Msa0384590:intron 40.0%
!! AAGCCTTATTCAGAAGTGCA+GGG - chr3_1:87835865-87835884 Msa0384590:CDS 40.0%
ATACCCTGCACTTCTGAATA+AGG + chr3_1:87835871-87835890 None:intergenic 40.0%
! TTATTCAGAAGTGCAGGGTA+TGG - chr3_1:87835870-87835889 Msa0384590:CDS 40.0%
CAATAGCCACAAGTGAACTT+AGG - chr3_1:87835934-87835953 Msa0384590:CDS 40.0%
CAAAAATAGCTAGGGTGTGA+TGG - chr3_1:87836123-87836142 Msa0384590:CDS 40.0%
GGACTTGTCCTAATGAATCT+TGG - chr3_1:87836144-87836163 Msa0384590:CDS 40.0%
TCCACATGCATACTCTTAAG+GGG + chr3_1:87836267-87836286 None:intergenic 40.0%
CTCCACATGCATACTCTTAA+GGG + chr3_1:87836268-87836287 None:intergenic 40.0%
AGACTTTCCACTGTCCATGA+TGG - chr3_1:87834656-87834675 Msa0384590:three_prime_UTR 45.0%
GACTTTCCACTGTCCATGAT+GGG - chr3_1:87834657-87834676 Msa0384590:three_prime_UTR 45.0%
TCGGCCATTAGATTCTTCGA+AGG + chr3_1:87834840-87834859 None:intergenic 45.0%
CGAAGAATCTAATGGCCGAA+AGG - chr3_1:87834841-87834860 Msa0384590:three_prime_UTR 45.0%
GTCCCTAAGATAAGCAAGGT+AGG - chr3_1:87834912-87834931 Msa0384590:CDS 45.0%
GACAGTTAAAAAGGAGCCGA+GGG - chr3_1:87835673-87835692 Msa0384590:CDS 45.0%
!! CAAGCCTTATTCAGAAGTGC+AGG - chr3_1:87835864-87835883 Msa0384590:CDS 45.0%
CCTCCACATGCATACTCTTA+AGG + chr3_1:87836269-87836288 None:intergenic 45.0%
! CCTTAAGAGTATGCATGTGG+AGG - chr3_1:87836266-87836285 Msa0384590:CDS 45.0%
AGACTTTCCACTGTCCATGA+TGG - chr3_1:87834656-87834675 Msa0384590:three_prime_UTR 45.0%
GACTTTCCACTGTCCATGAT+GGG - chr3_1:87834657-87834676 Msa0384590:three_prime_UTR 45.0%
TCGGCCATTAGATTCTTCGA+AGG + chr3_1:87834840-87834859 None:intergenic 45.0%
CGAAGAATCTAATGGCCGAA+AGG - chr3_1:87834841-87834860 Msa0384590:three_prime_UTR 45.0%
GTCCCTAAGATAAGCAAGGT+AGG - chr3_1:87834912-87834931 Msa0384590:CDS 45.0%
GACAGTTAAAAAGGAGCCGA+GGG - chr3_1:87835673-87835692 Msa0384590:CDS 45.0%
!! CAAGCCTTATTCAGAAGTGC+AGG - chr3_1:87835864-87835883 Msa0384590:CDS 45.0%
CCTCCACATGCATACTCTTA+AGG + chr3_1:87836269-87836288 None:intergenic 45.0%
! CCTTAAGAGTATGCATGTGG+AGG - chr3_1:87836266-87836285 Msa0384590:CDS 45.0%
TCTTCTCCCATCATGGACAG+TGG + chr3_1:87834666-87834685 None:intergenic 50.0%
! TTTGAGGTAGAGAGGAGTGC+AGG - chr3_1:87835281-87835300 Msa0384590:intron 50.0%
!! ATTTGTTGTGCAGGGAAGCC+AGG - chr3_1:87835317-87835336 Msa0384590:intron 50.0%
! TTTGTTGTGCAGGGAAGCCA+GGG - chr3_1:87835318-87835337 Msa0384590:intron 50.0%
ACTGTGGATAGCAACAACCC+TGG + chr3_1:87835338-87835357 None:intergenic 50.0%
CACAATGCAGGCTTCTTGCT+CGG - chr3_1:87835421-87835440 Msa0384590:CDS 50.0%
CGACAGTTAAAAAGGAGCCG+AGG - chr3_1:87835672-87835691 Msa0384590:CDS 50.0%
! TTCAGAAGTGCAGGGTATGG+TGG - chr3_1:87835873-87835892 Msa0384590:CDS 50.0%
ATGCATACTCTTAAGGGGCC+TGG + chr3_1:87836262-87836281 None:intergenic 50.0%
! GCCCCTTAAGAGTATGCATG+TGG - chr3_1:87836263-87836282 Msa0384590:intron 50.0%
TCTTCTCCCATCATGGACAG+TGG + chr3_1:87834666-87834685 None:intergenic 50.0%
! TTTGAGGTAGAGAGGAGTGC+AGG - chr3_1:87835281-87835300 Msa0384590:intron 50.0%
!! ATTTGTTGTGCAGGGAAGCC+AGG - chr3_1:87835317-87835336 Msa0384590:intron 50.0%
! TTTGTTGTGCAGGGAAGCCA+GGG - chr3_1:87835318-87835337 Msa0384590:intron 50.0%
ACTGTGGATAGCAACAACCC+TGG + chr3_1:87835338-87835357 None:intergenic 50.0%
CACAATGCAGGCTTCTTGCT+CGG - chr3_1:87835421-87835440 Msa0384590:CDS 50.0%
CGACAGTTAAAAAGGAGCCG+AGG - chr3_1:87835672-87835691 Msa0384590:CDS 50.0%
! TTCAGAAGTGCAGGGTATGG+TGG - chr3_1:87835873-87835892 Msa0384590:CDS 50.0%
ATGCATACTCTTAAGGGGCC+TGG + chr3_1:87836262-87836281 None:intergenic 50.0%
! GCCCCTTAAGAGTATGCATG+TGG - chr3_1:87836263-87836282 Msa0384590:intron 50.0%
! TAGAGAGGAGTGCAGGCACA+AGG - chr3_1:87835288-87835307 Msa0384590:intron 55.0%
! AGAGAGGAGTGCAGGCACAA+GGG - chr3_1:87835289-87835308 Msa0384590:intron 55.0%
AATGCAGGCTTCTTGCTCGG+AGG - chr3_1:87835424-87835443 Msa0384590:CDS 55.0%
GCCTAGTTGTTGCCATTGCC+AGG - chr3_1:87836241-87836260 Msa0384590:intron 55.0%
GCCTGGCAATGGCAACAACT+AGG + chr3_1:87836245-87836264 None:intergenic 55.0%
ACTCTTAAGGGGCCTGGCAA+TGG + chr3_1:87836256-87836275 None:intergenic 55.0%
! TAGAGAGGAGTGCAGGCACA+AGG - chr3_1:87835288-87835307 Msa0384590:intron 55.0%
! AGAGAGGAGTGCAGGCACAA+GGG - chr3_1:87835289-87835308 Msa0384590:intron 55.0%
AATGCAGGCTTCTTGCTCGG+AGG - chr3_1:87835424-87835443 Msa0384590:CDS 55.0%
GCCTAGTTGTTGCCATTGCC+AGG - chr3_1:87836241-87836260 Msa0384590:intron 55.0%
GCCTGGCAATGGCAACAACT+AGG + chr3_1:87836245-87836264 None:intergenic 55.0%
ACTCTTAAGGGGCCTGGCAA+TGG + chr3_1:87836256-87836275 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87834330 87836440 87834330 ID=Msa0384590;Name=Msa0384590
chr3_1 mRNA 87834330 87836440 87834330 ID=Msa0384590-mRNA-1;Parent=Msa0384590;Name=Msa0384590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.4|0.33|1|0.4|0.33|6|532|312
chr3_1 exon 87834330 87834948 87834330 ID=Msa0384590-mRNA-1:exon:23603;Parent=Msa0384590-mRNA-1
chr3_1 exon 87835373 87835489 87835373 ID=Msa0384590-mRNA-1:exon:23602;Parent=Msa0384590-mRNA-1
chr3_1 exon 87835595 87835753 87835595 ID=Msa0384590-mRNA-1:exon:23601;Parent=Msa0384590-mRNA-1
chr3_1 exon 87835841 87836061 87835841 ID=Msa0384590-mRNA-1:exon:23600;Parent=Msa0384590-mRNA-1
chr3_1 exon 87836077 87836256 87836077 ID=Msa0384590-mRNA-1:exon:23599;Parent=Msa0384590-mRNA-1
chr3_1 exon 87836266 87836440 87836266 ID=Msa0384590-mRNA-1:exon:23598;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87836266 87836440 87836266 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87836077 87836256 87836077 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87835841 87836061 87835841 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87835595 87835753 87835595 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87835373 87835489 87835373 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 CDS 87834862 87834948 87834862 ID=Msa0384590-mRNA-1:cds;Parent=Msa0384590-mRNA-1
chr3_1 three_prime_UTR 87834330 87834861 87834330 ID=Msa0384590-mRNA-1:three_prime_utr;Parent=Msa0384590-mRNA-1
Gene Sequence

>Msa0384590

ATGGAGTTCTATGATGGAGATTTCATTGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACCAATCCATGTCATGAAGAAAATCAATTCTTCTCATCAACAAGTAACTTGAGCTTTGATAACTGTTTTGATCAAAGCTCTTTACCATATCTTCCAAACTCTTCTTGTATTCCTCAAAGCTATAACAACAATGATCACTACAGTAACACTTTCAATGAAATCTATGGTTCCTTACTTGATGAATCTTCAACACCACAGATTCTTGGTTCATACTATAATAATAGTATTGACACTCCATTTATTTCTCAAGAAGACTTTCCACTGTCCATGATGGGAGAAGAAGATCAAAAGCTTCAGAATTTGGAGCTGCAAACAACATGTAAAATGGAGCCAATACAATCACCTGAAATGCCAGTAGTTTTCAACACTGGTAAGGGTATGGAAAGAAAGAACCGATCGAAGAAACTTCAAGGACAGCCTTCGAAGAATCTAATGGCCGAAAGGAGAAGACGAAAGAGATTAAATGACCGTCTTTCAATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTTTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGATGTCAAACCAAGTGAAATCTTAATCAGAAATTCTCCAAAGTTTGAGGTAGAGAGGAGTGCAGGCACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGCTATCCACAGTAAACACATTGGAAGCATTAGGCCTTGAGATTCAACAATGTGAATTGGAGAAAAAGGCAATGCTAAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGTGGAAGATGTTTGTGA

Protein sequence

>Msa0384590

MEFYDGDFIEELMALRRETYEITNPCHEENQFFSSTSNLSFDNCFDQSSLPYLPNSSCIPQSYNNNDHYSNTFNEIYGSLLDESSTPQILGSYYNNSIDTPFISQEDFPLSMMGEEDQKLQNLELQTTCKMEPIQSPEMPVVFNTGKGMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPSEILIRNSPKFEVERSAGTRVEICCAGKPGLLLSTVNTLEALGLEIQQCELEKKAMLSSEDIKQALFRSAGYGGRCL*