Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936950 | XP_013450947.1 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936950 | sp|Q8LGJ5|PCO2_ARATH | 58.947 | 285 | 101 | 5 | 1 | 278 | 1 | 276 | 4.22e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa0936950 | -0.816400 | 5.638282e-52 | -8.615850e-47 |
| Msa0056230 | Msa0936950 | -0.814675 | 1.365047e-51 | -8.615850e-47 |
| Msa0079320 | Msa0936950 | -0.813035 | 3.138045e-51 | -8.615850e-47 |
| Msa0091300 | Msa0936950 | -0.817586 | 3.054527e-52 | -8.615850e-47 |
| Msa0604890 | Msa0936950 | -0.819719 | 1.001759e-52 | -8.615850e-47 |
| Msa0646180 | Msa0936950 | -0.835999 | 1.209655e-56 | -8.615850e-47 |
| Msa0700410 | Msa0936950 | 0.817314 | 3.516237e-52 | -8.615850e-47 |
| Msa0722660 | Msa0936950 | -0.815534 | 8.798962e-52 | -8.615850e-47 |
| Msa0801320 | Msa0936950 | -0.807431 | 5.072505e-50 | -8.615850e-47 |
| Msa0172110 | Msa0936950 | -0.810175 | 1.313400e-50 | -8.615850e-47 |
| Msa0183960 | Msa0936950 | -0.807710 | 4.424703e-50 | -8.615850e-47 |
| Msa0192890 | Msa0936950 | 0.806424 | 8.280646e-50 | -8.615850e-47 |
| Msa0214800 | Msa0936950 | 0.817842 | 2.673602e-52 | -8.615850e-47 |
| Msa0220160 | Msa0936950 | 0.823629 | 1.249756e-53 | -8.615850e-47 |
| Msa0220170 | Msa0936950 | 0.801455 | 8.932424e-49 | -8.615850e-47 |
| Msa0223500 | Msa0936950 | -0.827170 | 1.813835e-54 | -8.615850e-47 |
| Msa0227790 | Msa0936950 | 0.800427 | 1.448666e-48 | -8.615850e-47 |
| Msa0378620 | Msa0936950 | -0.814024 | 1.901387e-51 | -8.615850e-47 |
| Msa0432260 | Msa0936950 | -0.809099 | 2.236978e-50 | -8.615850e-47 |
| Msa0476730 | Msa0936950 | -0.802572 | 5.264213e-49 | -8.615850e-47 |
| Msa0264580 | Msa0936950 | -0.828990 | 6.611546e-55 | -8.615850e-47 |
| Msa0294200 | Msa0936950 | 0.831324 | 1.780797e-55 | -8.615850e-47 |
| Msa0295030 | Msa0936950 | -0.826762 | 2.270748e-54 | -8.615850e-47 |
| Msa0296190 | Msa0936950 | 0.827145 | 1.838566e-54 | -8.615850e-47 |
| Msa0339970 | Msa0936950 | -0.830472 | 2.880405e-55 | -8.615850e-47 |
| Msa0362440 | Msa0936950 | -0.804223 | 2.394858e-49 | -8.615850e-47 |
| Msa0483160 | Msa0936950 | -0.808317 | 3.287408e-50 | -8.615850e-47 |
| Msa0502900 | Msa0936950 | -0.808635 | 2.811443e-50 | -8.615850e-47 |
| Msa0526490 | Msa0936950 | -0.818478 | 1.919696e-52 | -8.615850e-47 |
| Msa0526500 | Msa0936950 | -0.804496 | 2.100857e-49 | -8.615850e-47 |
| Msa0563440 | Msa0936950 | 0.804094 | 2.547274e-49 | -8.615850e-47 |
| Msa0871620 | Msa0936950 | 0.943037 | 2.471567e-102 | -8.615850e-47 |
| Msa0904940 | Msa0936950 | 0.921928 | 1.903931e-88 | -8.615850e-47 |
| Msa0936950 | Msa0956600 | -0.803972 | 2.700735e-49 | -8.615850e-47 |
| Msa0936950 | Msa0971780 | -0.802978 | 4.339841e-49 | -8.615850e-47 |
| Msa0936950 | Msa0974250 | 0.921199 | 4.858717e-88 | -8.615850e-47 |
| Msa0936950 | Msa1104020 | -0.801629 | 8.228904e-49 | -8.615850e-47 |
| Msa0936950 | Msa1169590 | -0.810562 | 1.083799e-50 | -8.615850e-47 |
| Msa0936950 | Msa1213470 | -0.816371 | 5.724930e-52 | -8.615850e-47 |
| Msa0936950 | Msa1219530 | -0.807405 | 5.135495e-50 | -8.615850e-47 |
| Msa0936950 | Msa1300370 | -0.817854 | 2.656296e-52 | -8.615850e-47 |
| Msa0936950 | Msa1307110 | -0.814271 | 1.677160e-51 | -8.615850e-47 |
| Msa0936950 | Msa1333220 | -0.807270 | 5.486371e-50 | -8.615850e-47 |
| Msa0936950 | Msa1342560 | 0.810365 | 1.195346e-50 | -8.615850e-47 |
| Msa0936950 | Msa1359880 | -0.834197 | 3.444578e-56 | -8.615850e-47 |
| Msa0936950 | Msa1363270 | -0.800064 | 1.716959e-48 | -8.615850e-47 |
| Msa0936950 | Msa1363280 | -0.806550 | 7.789263e-50 | -8.615850e-47 |
| Msa0936950 | Msa1409360 | -0.805698 | 1.177194e-49 | -8.615850e-47 |
| Msa0936950 | Msa1429810 | 0.809717 | 1.648615e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936950 | MtrunA17_Chr6g0452941 | 97.491 | 279 | 7 | 0 | 1 | 279 | 1 | 279 | 0.0 | 567 |
| Msa0936950 | MtrunA17_Chr7g0216881 | 68.198 | 283 | 81 | 3 | 1 | 279 | 1 | 278 | 4.21e-136 | 385 |
| Msa0936950 | MtrunA17_Chr6g0460971 | 47.348 | 264 | 129 | 5 | 20 | 279 | 34 | 291 | 6.53e-78 | 238 |
| Msa0936950 | MtrunA17_Chr7g0253891 | 48.855 | 262 | 123 | 7 | 20 | 276 | 23 | 278 | 8.05e-78 | 237 |
| Msa0936950 | MtrunA17_Chr2g0307681 | 44.656 | 262 | 123 | 7 | 29 | 276 | 16 | 269 | 7.22e-66 | 206 |
| Msa0936950 | MtrunA17_Chr2g0320221 | 41.767 | 249 | 115 | 7 | 41 | 276 | 5 | 236 | 2.37e-62 | 196 |
| Msa0936950 | MtrunA17_Chr4g0041281 | 42.400 | 250 | 113 | 8 | 41 | 276 | 5 | 237 | 4.87e-61 | 193 |
| Msa0936950 | MtrunA17_Chr2g0283961 | 39.608 | 255 | 123 | 9 | 38 | 276 | 1 | 240 | 4.63e-57 | 183 |
| Msa0936950 | MtrunA17_Chr5g0426531 | 39.370 | 254 | 117 | 5 | 37 | 277 | 2 | 231 | 6.50e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936950 | AT5G39890.1 | 58.947 | 285 | 101 | 5 | 1 | 278 | 1 | 276 | 4.28e-116 | 335 |
| Msa0936950 | AT5G39890.2 | 60.494 | 243 | 81 | 4 | 1 | 237 | 1 | 234 | 1.79e-100 | 294 |
| Msa0936950 | AT5G15120.1 | 59.259 | 243 | 83 | 4 | 41 | 276 | 58 | 291 | 1.02e-99 | 294 |
| Msa0936950 | AT1G18490.1 | 45.420 | 262 | 117 | 9 | 33 | 276 | 27 | 280 | 1.44e-63 | 201 |
| Msa0936950 | AT2G42670.1 | 42.683 | 246 | 120 | 6 | 41 | 276 | 5 | 239 | 8.77e-63 | 198 |
| Msa0936950 | AT2G42670.2 | 43.320 | 247 | 118 | 7 | 41 | 276 | 5 | 240 | 3.32e-62 | 196 |
| Msa0936950 | AT3G58670.2 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.75e-61 | 193 |
| Msa0936950 | AT3G58670.3 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.75e-61 | 193 |
| Msa0936950 | AT3G58670.1 | 41.870 | 246 | 123 | 5 | 41 | 276 | 5 | 240 | 8.75e-61 | 193 |
| Msa0936950 | AT3G58670.4 | 44.086 | 186 | 98 | 2 | 91 | 276 | 18 | 197 | 1.04e-51 | 168 |
| Msa0936950 | AT2G42670.3 | 46.341 | 164 | 80 | 3 | 114 | 276 | 16 | 172 | 3.78e-44 | 148 |
Find 79 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGGAACAACAGAAAA+AGG | 0.196642 | 6_3:+7895253 | Msa0936950:three_prime_UTR |
| ATCCTAATATGCCATATTTC+AGG | 0.200898 | 6_3:+7893012 | Msa0936950:CDS |
| TAAACATTCCTTTCCTCTTC+TGG | 0.218650 | 6_3:-7894968 | None:intergenic |
| TTGAAAATGGTAGGAGATTC+AGG | 0.242628 | 6_3:-7893611 | None:intergenic |
| GCCCTGAAATATGGCATATT+AGG | 0.257004 | 6_3:-7893014 | None:intergenic |
| TGTGCAGTTCTTGATGTTCT+TGG | 0.289175 | 6_3:+7894219 | Msa0936950:CDS |
| GGATCCAAGTCAACATCTTC+TGG | 0.300517 | 6_3:-7892993 | None:intergenic |
| ATAACAAACTTCTATATTGA+TGG | 0.307799 | 6_3:-7895314 | None:intergenic |
| CTGCTAGTAATTGTTTCCTT+TGG | 0.312997 | 6_3:-7891267 | None:intergenic |
| TCCTCAGGATATAAGATAGA+AGG | 0.318843 | 6_3:-7894159 | None:intergenic |
| ACTTTCTGAGGGTTTGAAAA+TGG | 0.319904 | 6_3:-7893624 | None:intergenic |
| TGCACATCAAATCATATGAT+TGG | 0.370445 | 6_3:+7893573 | Msa0936950:CDS |
| CTTGAAGATTTAAAAGTTGA+AGG | 0.376544 | 6_3:+7895016 | Msa0936950:CDS |
| AAGGAAGTCTTTGCTAATAG+TGG | 0.389136 | 6_3:+7891357 | Msa0936950:CDS |
| TGCTAACTCTCCACAATAGT+TGG | 0.397487 | 6_3:-7895055 | None:intergenic |
| CCTCCATATTCTGATCTTGA+TGG | 0.415771 | 6_3:+7894243 | Msa0936950:CDS |
| ATTCCTTTCCTCTTCTGGTA+TGG | 0.419126 | 6_3:-7894963 | None:intergenic |
| GATGCATTTGCCCTGAAATA+TGG | 0.421163 | 6_3:-7893023 | None:intergenic |
| GTTGAGAGAGAGAAAACAGT+TGG | 0.431199 | 6_3:-7890588 | None:intergenic |
| TCTGTTGTTCCATGAAGAAA+AGG | 0.441499 | 6_3:-7895247 | None:intergenic |
| GTCTTTGCTAATAGTGGGAC+AGG | 0.450153 | 6_3:+7891363 | Msa0936950:CDS |
| CTGCCATCAAGATCAGAATA+TGG | 0.460746 | 6_3:-7894246 | None:intergenic |
| TTATGAGTGTGAGAAATTCT+CGG | 0.469187 | 6_3:+7893079 | Msa0936950:CDS |
| GCAGCAGGTCAAGGAGGAAC+CGG | 0.470355 | 6_3:+7891286 | Msa0936950:CDS |
| GAAGAAGTAGCAAAGAAGAA+GGG | 0.470798 | 6_3:-7890615 | None:intergenic |
| TTACCTGGAAAGTTGGAAAA+CGG | 0.476609 | 6_3:-7894294 | None:intergenic |
| GCACATCAAATCATATGATT+GGG | 0.481019 | 6_3:+7893574 | Msa0936950:CDS |
| AGAAGAAGTAGCAAAGAAGA+AGG | 0.482084 | 6_3:-7890616 | None:intergenic |
| GTGAAGGTTGGTGAAGATTG+AGG | 0.482525 | 6_3:-7890663 | None:intergenic |
| AGAACCTTAGCTGATAGAAA+AGG | 0.486526 | 6_3:+7891225 | Msa0936950:CDS |
| GCATCTTCTTCTGACGCCGC+CGG | 0.489872 | 6_3:-7891305 | None:intergenic |
| ATTGACATTTGATATAAAAG+AGG | 0.492060 | 6_3:-7890640 | None:intergenic |
| TTATGAATGGCTACAAGAAA+AGG | 0.495196 | 6_3:+7894988 | Msa0936950:CDS |
| TGCACAAGTTGTTGTTGTTG+AGG | 0.499027 | 6_3:-7890742 | None:intergenic |
| CAAAGAGAAGTCAGAAAACC+AGG | 0.501782 | 6_3:-7890559 | None:intergenic |
| TCCTAATATGCCATATTTCA+GGG | 0.504171 | 6_3:+7893013 | Msa0936950:CDS |
| AGGAAAGGAATGTTTATGAA+TGG | 0.504362 | 6_3:+7894975 | Msa0936950:CDS |
| TGCAAGTTGCCACCATCCTC+AGG | 0.504973 | 6_3:-7894174 | None:intergenic |
| GAAAGAGAAATAGTGAAGGT+TGG | 0.505968 | 6_3:-7890675 | None:intergenic |
| AGGAATTGTCCCACCAGCTC+AGG | 0.513462 | 6_3:+7891383 | Msa0936950:CDS |
| GAATATCAAAACTTAGCCCC+TGG | 0.518117 | 6_3:+7890541 | None:intergenic |
| AACTTATCAATGTCCTGAGC+TGG | 0.532617 | 6_3:-7891396 | None:intergenic |
| TAAGTACTACTCACTTTCTG+AGG | 0.535516 | 6_3:-7893636 | None:intergenic |
| AGGAAACAATTACTAGCAGC+AGG | 0.544285 | 6_3:+7891271 | Msa0936950:CDS |
| AAGAAGTAGCAAAGAAGAAG+GGG | 0.552447 | 6_3:-7890614 | None:intergenic |
| TCTATCTTATATCCTGAGGA+TGG | 0.553467 | 6_3:+7894162 | Msa0936950:CDS |
| ATGTTGCAGGTCCTGAGTTG+AGG | 0.553715 | 6_3:+7894091 | Msa0936950:intron |
| TCTGAGGGTTTGAAAATGGT+AGG | 0.554115 | 6_3:-7893620 | None:intergenic |
| AGGAAGTCTTTGCTAATAGT+GGG | 0.558450 | 6_3:+7891358 | Msa0936950:CDS |
| TTATCAATGTCCTGAGCTGG+TGG | 0.560783 | 6_3:-7891393 | None:intergenic |
| GTACAGTGGTCCAACTATTG+TGG | 0.561786 | 6_3:+7895045 | Msa0936950:CDS |
| CCTCAGGATATAAGATAGAA+GGG | 0.572370 | 6_3:-7894158 | None:intergenic |
| AAAACCAGAAGATGTTGACT+TGG | 0.573524 | 6_3:+7892989 | Msa0936950:CDS |
| CAATTACTAGCAGCAGGTCA+AGG | 0.576722 | 6_3:+7891277 | Msa0936950:CDS |
| AAGTACTACTCACTTTCTGA+GGG | 0.577095 | 6_3:-7893635 | None:intergenic |
| TATAAGATAGAAGGGTTGCA+AGG | 0.578009 | 6_3:-7894150 | None:intergenic |
| GGGCAAATGCATCTCACAGA+AGG | 0.579084 | 6_3:+7893033 | Msa0936950:CDS |
| CTCAGGACATTGATAAGTTG+CGG | 0.580370 | 6_3:+7891400 | Msa0936950:CDS |
| CCCTTCTATCTTATATCCTG+AGG | 0.585726 | 6_3:+7894158 | Msa0936950:CDS |
| AGGACTATCCATACCAGAAG+AGG | 0.597067 | 6_3:+7894955 | Msa0936950:CDS |
| TATCCATACCAGAAGAGGAA+AGG | 0.605568 | 6_3:+7894960 | Msa0936950:CDS |
| CATCAAATCATATGATTGGG+TGG | 0.621774 | 6_3:+7893577 | Msa0936950:CDS |
| TGTAGAGGAATAACACCAGA+AGG | 0.622496 | 6_3:-7893503 | None:intergenic |
| ATCTTATATCCTGAGGATGG+TGG | 0.627492 | 6_3:+7894165 | Msa0936950:CDS |
| GTTGAGGTTAGCAAAAGTGA+AGG | 0.633387 | 6_3:+7894107 | Msa0936950:CDS |
| GCGTCAGAAGAAGATGCCGC+CGG | 0.640523 | 6_3:+7891311 | Msa0936950:CDS |
| TTTGGAAAGAGAAATAGTGA+AGG | 0.642083 | 6_3:-7890679 | None:intergenic |
| ATTCCAGGGTGATTATGTAG+AGG | 0.643712 | 6_3:-7893518 | None:intergenic |
| GCAGGTCAAGGAGGAACCGG+CGG | 0.659217 | 6_3:+7891289 | Msa0936950:CDS |
| TTGATGGCTAAAATTAAACA+TGG | 0.676097 | 6_3:-7895298 | None:intergenic |
| AAAGAGAAGTCAGAAAACCA+GGG | 0.676901 | 6_3:-7890558 | None:intergenic |
| TATCAATGTCCTGAGCTGGT+GGG | 0.678123 | 6_3:-7891392 | None:intergenic |
| CCATCAAGATCAGAATATGG+AGG | 0.684165 | 6_3:-7894243 | None:intergenic |
| ATTCCTCTACATAATCACCC+TGG | 0.691462 | 6_3:+7893515 | Msa0936950:CDS |
| AAGAGAAGTCAGAAAACCAG+GGG | 0.695114 | 6_3:-7890557 | None:intergenic |
| AGAGGAATAACACCAGAAGG+TGG | 0.695453 | 6_3:-7893500 | None:intergenic |
| GTTGAAGGAAGAATGTACAG+TGG | 0.723898 | 6_3:+7895031 | Msa0936950:CDS |
| TTACTAGCAGCAGGTCAAGG+AGG | 0.728299 | 6_3:+7891280 | Msa0936950:CDS |
| AAAATGGTAGGAGATTCAGG+AGG | 0.774453 | 6_3:-7893608 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAAATAATAAGAATG+AGG | - | chr6_3:7890822-7890841 | None:intergenic | 10.0% |
| !!! | ATTTATTTTCTCAATTATTT+TGG | + | chr6_3:7891621-7891640 | Msa0936950:intron | 10.0% |
| !!! | TTATTGTTATTAATTGTTTT+CGG | + | chr6_3:7891680-7891699 | Msa0936950:intron | 10.0% |
| !! | AAAAATCTTAAAATATACAA+AGG | - | chr6_3:7893801-7893820 | None:intergenic | 10.0% |
| !! | ATGAAAAATGTTGTAAAATT+TGG | - | chr6_3:7890700-7890719 | None:intergenic | 15.0% |
| !!! | TTTTGTTTACATTGTTTTTT+TGG | - | chr6_3:7890790-7890809 | None:intergenic | 15.0% |
| !!! | TCTGTTTTTGAATTTTTTAT+GGG | + | chr6_3:7890918-7890937 | Msa0936950:intron | 15.0% |
| !!! | TTCAAATTTGAATTGTTTTT+TGG | + | chr6_3:7890952-7890971 | Msa0936950:intron | 15.0% |
| !! | AAACTTAATTTATGCTAAAA+GGG | - | chr6_3:7890981-7891000 | None:intergenic | 15.0% |
| !! | TAAACTTAATTTATGCTAAA+AGG | - | chr6_3:7890982-7891001 | None:intergenic | 15.0% |
| !! | AATAAAAATTTCAAAAACAG+AGG | - | chr6_3:7891073-7891092 | None:intergenic | 15.0% |
| !!! | TCTGTTTTTGAAATTTTTAT+TGG | + | chr6_3:7891072-7891091 | Msa0936950:intron | 15.0% |
| !!! | CTGTTTTTGAAATTTTTATT+GGG | + | chr6_3:7891073-7891092 | Msa0936950:intron | 15.0% |
| !!! | ATTGTTTTTATGTTGATAAT+TGG | + | chr6_3:7891473-7891492 | Msa0936950:intron | 15.0% |
| !!! | TATTGTTATTAATTGTTTTC+GGG | + | chr6_3:7891681-7891700 | Msa0936950:intron | 15.0% |
| !! | AAAATGATAACATCAAAAAT+TGG | - | chr6_3:7892059-7892078 | None:intergenic | 15.0% |
| !! | TTTATATATTATATATTCCG+AGG | + | chr6_3:7892218-7892237 | Msa0936950:intron | 15.0% |
| !! | TATGATGTTTAATAAGAAAA+TGG | + | chr6_3:7893131-7893150 | Msa0936950:intron | 15.0% |
| !!! | ATAGCAATTTTTTCTATTTT+AGG | - | chr6_3:7893761-7893780 | None:intergenic | 15.0% |
| !!! | TGAACTATAGTTTTAAATTA+GGG | - | chr6_3:7894019-7894038 | None:intergenic | 15.0% |
| !!! | ATGAACTATAGTTTTAAATT+AGG | - | chr6_3:7894020-7894039 | None:intergenic | 15.0% |
| !!! | CTTTATTATTGTACTTTTTT+TGG | + | chr6_3:7895209-7895228 | Msa0936950:three_prime_UTR | 15.0% |
| !! | ATTGACATTTGATATAAAAG+AGG | - | chr6_3:7890643-7890662 | None:intergenic | 20.0% |
| !! | CATAAAAAATTCAAAAACAG+AGG | - | chr6_3:7890919-7890938 | None:intergenic | 20.0% |
| !!! | CTCTGTTTTTGAATTTTTTA+TGG | + | chr6_3:7890917-7890936 | Msa0936950:intron | 20.0% |
| !!! | CTGTTTTTGAATTTTTTATG+GGG | + | chr6_3:7890919-7890938 | Msa0936950:intron | 20.0% |
| !!! | ATTTTACCATGAATACTATT+GGG | + | chr6_3:7892074-7892093 | Msa0936950:intron | 20.0% |
| !! | AACTAAAATATATATCTCGT+GGG | - | chr6_3:7892299-7892318 | None:intergenic | 20.0% |
| !! | AAACTAAAATATATATCTCG+TGG | - | chr6_3:7892300-7892319 | None:intergenic | 20.0% |
| !! | TGGATATGAAACATAAAAAA+AGG | - | chr6_3:7892427-7892446 | None:intergenic | 20.0% |
| !! | CAAATGTCAATAAATAACAA+TGG | + | chr6_3:7892567-7892586 | Msa0936950:intron | 20.0% |
| !!! | TGACATTTTTGTTTTTTGTA+TGG | + | chr6_3:7892616-7892635 | Msa0936950:intron | 20.0% |
| !! | ACACATTAAAAATGTGTATA+AGG | - | chr6_3:7893455-7893474 | None:intergenic | 20.0% |
| !! | GTATTTAATATGTCTAACTT+AGG | - | chr6_3:7893727-7893746 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGAAAATTTTACC+TGG | - | chr6_3:7894312-7894331 | None:intergenic | 20.0% |
| !!! | GATTCAAACTTTAGAAAATT+AGG | + | chr6_3:7894516-7894535 | Msa0936950:intron | 20.0% |
| !! | ATATGATTAAAGTTTATGTG+GGG | - | chr6_3:7894901-7894920 | None:intergenic | 20.0% |
| !! | GATATGATTAAAGTTTATGT+GGG | - | chr6_3:7894902-7894921 | None:intergenic | 20.0% |
| !! | AGATATGATTAAAGTTTATG+TGG | - | chr6_3:7894903-7894922 | None:intergenic | 20.0% |
| !!! | TTTGTCTTTTTTTTTCTGTA+GGG | - | chr6_3:7895148-7895167 | None:intergenic | 20.0% |
| !!! | TTTTGTCTTTTTTTTTCTGT+AGG | - | chr6_3:7895149-7895168 | None:intergenic | 20.0% |
| !! | ATAACAAACTTCTATATTGA+TGG | - | chr6_3:7895317-7895336 | None:intergenic | 20.0% |
| !! | AGGATTAGTAATAAAAACAG+AGG | - | chr6_3:7890899-7890918 | None:intergenic | 25.0% |
| !!! | ATTGCATTGAATTTTTCAGT+TGG | + | chr6_3:7891001-7891020 | Msa0936950:intron | 25.0% |
| !! | GAACAAAGTTGAAAGATTTT+TGG | + | chr6_3:7891179-7891198 | Msa0936950:five_prime_UTR | 25.0% |
| !!! | AGTTGAAAGATTTTTGGTTT+TGG | + | chr6_3:7891185-7891204 | Msa0936950:five_prime_UTR | 25.0% |
| !!! | ATTTTTGGTTTTGGTTTGAA+TGG | + | chr6_3:7891194-7891213 | Msa0936950:exon | 25.0% |
| !!! | TTTTTGGTTTTGGTTTGAAT+GGG | + | chr6_3:7891195-7891214 | Msa0936950:exon | 25.0% |
| !!! | TTATGTTGATAATTGGCAAT+AGG | + | chr6_3:7891480-7891499 | Msa0936950:intron | 25.0% |
| ! | TCAATGATATTTCAGATTGA+AGG | + | chr6_3:7891532-7891551 | Msa0936950:intron | 25.0% |
| !!! | ATTTTTTGTGACAACTCATA+AGG | + | chr6_3:7891946-7891965 | Msa0936950:intron | 25.0% |
| !! | CATTTTACCATGAATACTAT+TGG | + | chr6_3:7892073-7892092 | Msa0936950:intron | 25.0% |
| ! | ACTAAAATATATATCTCGTG+GGG | - | chr6_3:7892298-7892317 | None:intergenic | 25.0% |
| ! | TTAGAAGTCAAATGAATGAA+TGG | - | chr6_3:7892447-7892466 | None:intergenic | 25.0% |
| ! | GATTTACTTTGTGGTTAATT+AGG | + | chr6_3:7892471-7892490 | Msa0936950:intron | 25.0% |
| ! | GCTATATTAGTTAGTAATGA+AGG | + | chr6_3:7892513-7892532 | Msa0936950:intron | 25.0% |
| !! | TAATGAGTTTTTGTATTCCT+AGG | - | chr6_3:7892711-7892730 | None:intergenic | 25.0% |
| !! | TACAAAAAAATCACTAGCTT+AGG | - | chr6_3:7892808-7892827 | None:intergenic | 25.0% |
| ! | TATGAAACACCAATTATTAC+TGG | + | chr6_3:7892835-7892854 | Msa0936950:intron | 25.0% |
| !! | ATGTGCAAGTATGTAATTTT+TGG | - | chr6_3:7893059-7893078 | None:intergenic | 25.0% |
| ! | ATCATATAAACAGTTTAGAC+TGG | - | chr6_3:7893117-7893136 | None:intergenic | 25.0% |
| !! | TATTTTGTGAACTGTTTGAT+CGG | - | chr6_3:7893345-7893364 | None:intergenic | 25.0% |
| !! | TTTTTAATGTGTTGTACAGA+TGG | + | chr6_3:7893463-7893482 | Msa0936950:intron | 25.0% |
| !! | TTTTAATGTGTTGTACAGAT+GGG | + | chr6_3:7893464-7893483 | Msa0936950:intron | 25.0% |
| !!! | GTTTTTAGTAAGCTACTTTT+TGG | + | chr6_3:7893545-7893564 | Msa0936950:CDS | 25.0% |
| ! | TTTAATGTTAAGGGAAAGTA+CGG | + | chr6_3:7893964-7893983 | Msa0936950:intron | 25.0% |
| !! | AATGCTAATTATTTTCAGCT+AGG | - | chr6_3:7894062-7894081 | None:intergenic | 25.0% |
| ! | CATTTATATTCTAATGTTGC+AGG | + | chr6_3:7894078-7894097 | Msa0936950:intron | 25.0% |
| !!! | AGAAAGGCATAACTATTTTA+AGG | - | chr6_3:7894357-7894376 | None:intergenic | 25.0% |
| !! | ATTTTACGATCAAGATCATA+TGG | + | chr6_3:7894679-7894698 | Msa0936950:intron | 25.0% |
| !! | CAACTTTTAAATCTTCAAGT+TGG | - | chr6_3:7895015-7895034 | None:intergenic | 25.0% |
| ! | CTTGAAGATTTAAAAGTTGA+AGG | + | chr6_3:7895016-7895035 | Msa0936950:CDS | 25.0% |
| !! | TTGATGGCTAAAATTAAACA+TGG | - | chr6_3:7895301-7895320 | None:intergenic | 25.0% |
| TTTGGAAAGAGAAATAGTGA+AGG | - | chr6_3:7890682-7890701 | None:intergenic | 30.0% | |
| !!! | GATGTTTTTTGATGAGGTTA+AGG | - | chr6_3:7890723-7890742 | None:intergenic | 30.0% |
| AACCAAAAAAAACATCCTAG+TGG | + | chr6_3:7890764-7890783 | Msa0936950:five_prime_UTR | 30.0% | |
| ATAAAAACAGAGGAAAACAG+AGG | - | chr6_3:7890889-7890908 | None:intergenic | 30.0% | |
| TTTCAAAAACAGAGGAAACA+GGG | - | chr6_3:7891065-7891084 | None:intergenic | 30.0% | |
| ATTTCAAAAACAGAGGAAAC+AGG | - | chr6_3:7891066-7891085 | None:intergenic | 30.0% | |
| AAACTTAGTTTCAGCACAAA+GGG | - | chr6_3:7891135-7891154 | None:intergenic | 30.0% | |
| !! | GATGCATTGAATTTTTCAGT+TGG | + | chr6_3:7891155-7891174 | Msa0936950:intron | 30.0% |
| !!! | TTTTGGTTTTGGTTTGAATG+GGG | + | chr6_3:7891196-7891215 | Msa0936950:exon | 30.0% |
| ! | AGATTTTTGTGAATTGCCAA+AGG | + | chr6_3:7891251-7891270 | Msa0936950:CDS | 30.0% |
| ! | CATTCATTTGACTTCTAATG+TGG | + | chr6_3:7892449-7892468 | Msa0936950:intron | 30.0% |
| TCTAATGTGGATTTACTTTG+TGG | + | chr6_3:7892462-7892481 | Msa0936950:intron | 30.0% | |
| GTGGTTAATTAGGACTAATT+AGG | + | chr6_3:7892481-7892500 | Msa0936950:intron | 30.0% | |
| AGGTTTAAATCCCTATTAGT+AGG | + | chr6_3:7892533-7892552 | Msa0936950:intron | 30.0% | |
| AAGTTCTATGCCTACTAATA+GGG | - | chr6_3:7892546-7892565 | None:intergenic | 30.0% | |
| AAAGTTCTATGCCTACTAAT+AGG | - | chr6_3:7892547-7892566 | None:intergenic | 30.0% | |
| ATTGTCCATAAAGACTAAAG+AGG | + | chr6_3:7892655-7892674 | Msa0936950:intron | 30.0% | |
| ! | TACTTCCTCTTTAGTCTTTA+TGG | - | chr6_3:7892663-7892682 | None:intergenic | 30.0% |
| ! | TTTTGTATTCCTAGGCTTAT+AGG | - | chr6_3:7892703-7892722 | None:intergenic | 30.0% |
| AGCATAGAAGAATATCCTAT+GGG | - | chr6_3:7892775-7892794 | None:intergenic | 30.0% | |
| AAGCATAGAAGAATATCCTA+TGG | - | chr6_3:7892776-7892795 | None:intergenic | 30.0% | |
| ATCCTAATATGCCATATTTC+AGG | + | chr6_3:7893012-7893031 | Msa0936950:CDS | 30.0% | |
| TCCTAATATGCCATATTTCA+GGG | + | chr6_3:7893013-7893032 | Msa0936950:CDS | 30.0% | |
| TTATGAGTGTGAGAAATTCT+CGG | + | chr6_3:7893079-7893098 | Msa0936950:CDS | 30.0% | |
| AATTCATGCAGTCAATACAA+CGG | - | chr6_3:7893292-7893311 | None:intergenic | 30.0% | |
| ATTCATAATATCTCGACTCT+AGG | + | chr6_3:7893309-7893328 | Msa0936950:intron | 30.0% | |
| TTCATAATATCTCGACTCTA+GGG | + | chr6_3:7893310-7893329 | Msa0936950:intron | 30.0% | |
| TACTAAAAACTGTCATTCCA+GGG | - | chr6_3:7893535-7893554 | None:intergenic | 30.0% | |
| TTACTAAAAACTGTCATTCC+AGG | - | chr6_3:7893536-7893555 | None:intergenic | 30.0% | |
| TGCACATCAAATCATATGAT+TGG | + | chr6_3:7893573-7893592 | Msa0936950:CDS | 30.0% | |
| GCACATCAAATCATATGATT+GGG | + | chr6_3:7893574-7893593 | Msa0936950:CDS | 30.0% | |
| GCTGCAGTATTTAATGTTAA+GGG | + | chr6_3:7893955-7893974 | Msa0936950:intron | 30.0% | |
| ! | GAAAATTTTACCTGGAAAGT+TGG | - | chr6_3:7894304-7894323 | None:intergenic | 30.0% |
| TGAAGTGTATTAGTGAAGAA+AGG | - | chr6_3:7894373-7894392 | None:intergenic | 30.0% | |
| TATATCTCTTGACATATCCT+CGG | + | chr6_3:7894418-7894437 | Msa0936950:intron | 30.0% | |
| CAATCATGAATCTTGACAAT+TGG | - | chr6_3:7894581-7894600 | None:intergenic | 30.0% | |
| TGGAATTCATTGCAACATAA+CGG | + | chr6_3:7894611-7894630 | Msa0936950:intron | 30.0% | |
| AAATATACATTGCGTGACTT+TGG | - | chr6_3:7894663-7894682 | None:intergenic | 30.0% | |
| AGAAGTAACACCTTAGATTT+CGG | + | chr6_3:7894705-7894724 | Msa0936950:intron | 30.0% | |
| AAATCTCAATCCGAAATCTA+AGG | - | chr6_3:7894718-7894737 | None:intergenic | 30.0% | |
| TCAATCAAGATCAAATGACT+TGG | - | chr6_3:7894789-7894808 | None:intergenic | 30.0% | |
| AAATATCGATAGTGACATGT+GGG | - | chr6_3:7894864-7894883 | None:intergenic | 30.0% | |
| TCTCATGAAATTTCAGTTGA+AGG | + | chr6_3:7894935-7894954 | Msa0936950:intron | 30.0% | |
| AGGAAAGGAATGTTTATGAA+TGG | + | chr6_3:7894975-7894994 | Msa0936950:CDS | 30.0% | |
| TTATGAATGGCTACAAGAAA+AGG | + | chr6_3:7894988-7895007 | Msa0936950:CDS | 30.0% | |
| ! | CAATCTTGTAGATTTTATGC+TGG | + | chr6_3:7895182-7895201 | Msa0936950:three_prime_UTR | 30.0% |
| ! | TTTTCTTCTCCTTTTCTTCA+TGG | + | chr6_3:7895238-7895257 | Msa0936950:three_prime_UTR | 30.0% |
| AAAGAGAAGTCAGAAAACCA+GGG | - | chr6_3:7890561-7890580 | None:intergenic | 35.0% | |
| AAGAAGTAGCAAAGAAGAAG+GGG | - | chr6_3:7890617-7890636 | None:intergenic | 35.0% | |
| GAAGAAGTAGCAAAGAAGAA+GGG | - | chr6_3:7890618-7890637 | None:intergenic | 35.0% | |
| AGAAGAAGTAGCAAAGAAGA+AGG | - | chr6_3:7890619-7890638 | None:intergenic | 35.0% | |
| GAAAGAGAAATAGTGAAGGT+TGG | - | chr6_3:7890678-7890697 | None:intergenic | 35.0% | |
| !!! | GTTGAGGATGTTTTTTGATG+AGG | - | chr6_3:7890729-7890748 | None:intergenic | 35.0% |
| !!! | ACATTGTTTTTTTGGCCACT+AGG | - | chr6_3:7890782-7890801 | None:intergenic | 35.0% |
| TTCAAAAACAGAGGAAACAG+GGG | - | chr6_3:7891064-7891083 | None:intergenic | 35.0% | |
| CAAACTTAGTTTCAGCACAA+AGG | - | chr6_3:7891136-7891155 | None:intergenic | 35.0% | |
| AGAACCTTAGCTGATAGAAA+AGG | + | chr6_3:7891225-7891244 | Msa0936950:CDS | 35.0% | |
| ! | TCTTCCTTTTCTATCAGCTA+AGG | - | chr6_3:7891232-7891251 | None:intergenic | 35.0% |
| CTGCTAGTAATTGTTTCCTT+TGG | - | chr6_3:7891270-7891289 | None:intergenic | 35.0% | |
| !!! | GAGACTTTTTGAGACTTGTA+AGG | + | chr6_3:7891338-7891357 | Msa0936950:CDS | 35.0% |
| AAGGAAGTCTTTGCTAATAG+TGG | + | chr6_3:7891357-7891376 | Msa0936950:CDS | 35.0% | |
| AGGAAGTCTTTGCTAATAGT+GGG | + | chr6_3:7891358-7891377 | Msa0936950:CDS | 35.0% | |
| ATATGCGTCAGTATCCTTAT+TGG | + | chr6_3:7891842-7891861 | Msa0936950:intron | 35.0% | |
| CACTCATCAAACACAAGAAA+CGG | - | chr6_3:7891884-7891903 | None:intergenic | 35.0% | |
| AACTCACCCAATAGTATTCA+TGG | - | chr6_3:7892083-7892102 | None:intergenic | 35.0% | |
| TATTCCGAGGTTCTTTGATT+TGG | + | chr6_3:7892231-7892250 | Msa0936950:intron | 35.0% | |
| ATAGCCAAATCAAAGAACCT+CGG | - | chr6_3:7892238-7892257 | None:intergenic | 35.0% | |
| ! | GACTAAAGAGGAAGTAGTTT+TGG | + | chr6_3:7892667-7892686 | Msa0936950:intron | 35.0% |
| !!! | TAAAGAGGAAGTAGTTTTGG+TGG | + | chr6_3:7892670-7892689 | Msa0936950:intron | 35.0% |
| GCATAGAAGAATATCCTATG+GGG | - | chr6_3:7892774-7892793 | None:intergenic | 35.0% | |
| ACACAGACACCAGTAATAAT+TGG | - | chr6_3:7892847-7892866 | None:intergenic | 35.0% | |
| GTAAGTGGTTCATGGTTTAT+AGG | + | chr6_3:7892876-7892895 | Msa0936950:intron | 35.0% | |
| CTAGAGTTGTATACTTTGCA+TGG | - | chr6_3:7892946-7892965 | None:intergenic | 35.0% | |
| ! | AAAACCAGAAGATGTTGACT+TGG | + | chr6_3:7892989-7893008 | Msa0936950:CDS | 35.0% |
| ! | AAAATGGATTCCCTTCACTT+CGG | + | chr6_3:7893147-7893166 | Msa0936950:intron | 35.0% |
| GGTAACAGTTGGATCAATAT+CGG | - | chr6_3:7893271-7893290 | None:intergenic | 35.0% | |
| !! | ATATTTTGTTTGCCACCTTC+TGG | + | chr6_3:7893488-7893507 | Msa0936950:CDS | 35.0% |
| CATCAAATCATATGATTGGG+TGG | + | chr6_3:7893577-7893596 | Msa0936950:CDS | 35.0% | |
| TTGAAAATGGTAGGAGATTC+AGG | - | chr6_3:7893614-7893633 | None:intergenic | 35.0% | |
| ! | ACTTTCTGAGGGTTTGAAAA+TGG | - | chr6_3:7893627-7893646 | None:intergenic | 35.0% |
| AAGTACTACTCACTTTCTGA+GGG | - | chr6_3:7893638-7893657 | None:intergenic | 35.0% | |
| TAAGTACTACTCACTTTCTG+AGG | - | chr6_3:7893639-7893658 | None:intergenic | 35.0% | |
| AGTTAACGGTTGCAATGTAA+CGG | - | chr6_3:7893882-7893901 | None:intergenic | 35.0% | |
| GTACTTTCACCTGAAGTTAA+CGG | - | chr6_3:7893896-7893915 | None:intergenic | 35.0% | |
| CGCTGCAGTATTTAATGTTA+AGG | + | chr6_3:7893954-7893973 | Msa0936950:intron | 35.0% | |
| TATAAGATAGAAGGGTTGCA+AGG | - | chr6_3:7894153-7894172 | None:intergenic | 35.0% | |
| CCTCAGGATATAAGATAGAA+GGG | - | chr6_3:7894161-7894180 | None:intergenic | 35.0% | |
| TCCTCAGGATATAAGATAGA+AGG | - | chr6_3:7894162-7894181 | None:intergenic | 35.0% | |
| TCTATCTTATATCCTGAGGA+TGG | + | chr6_3:7894162-7894181 | Msa0936950:CDS | 35.0% | |
| TTACCTGGAAAGTTGGAAAA+CGG | - | chr6_3:7894297-7894316 | None:intergenic | 35.0% | |
| ! | TTGCGTGTTTTCTTTTACTG+CGG | - | chr6_3:7894449-7894468 | None:intergenic | 35.0% |
| AAGCACACAATGAGACAAAT+CGG | - | chr6_3:7894818-7894837 | None:intergenic | 35.0% | |
| GAAATATCGATAGTGACATG+TGG | - | chr6_3:7894865-7894884 | None:intergenic | 35.0% | |
| ATTAAAGTTTATGTGGGGTC+TGG | - | chr6_3:7894896-7894915 | None:intergenic | 35.0% | |
| TAAACATTCCTTTCCTCTTC+TGG | - | chr6_3:7894971-7894990 | None:intergenic | 35.0% | |
| TCTGTTGTTCCATGAAGAAA+AGG | - | chr6_3:7895250-7895269 | None:intergenic | 35.0% | |
| CTTCATGGAACAACAGAAAA+AGG | + | chr6_3:7895253-7895272 | Msa0936950:three_prime_UTR | 35.0% | |
| AAGAGAAGTCAGAAAACCAG+GGG | - | chr6_3:7890560-7890579 | None:intergenic | 40.0% | |
| CAAAGAGAAGTCAGAAAACC+AGG | - | chr6_3:7890562-7890581 | None:intergenic | 40.0% | |
| GTTGAGAGAGAGAAAACAGT+TGG | - | chr6_3:7890591-7890610 | None:intergenic | 40.0% | |
| ! | TGCACAAGTTGTTGTTGTTG+AGG | - | chr6_3:7890745-7890764 | None:intergenic | 40.0% |
| !!! | GGCCACTAGGATGTTTTTTT+TGG | - | chr6_3:7890769-7890788 | None:intergenic | 40.0% |
| AGAGGAAAACAGAGGAAACA+GGG | - | chr6_3:7890881-7890900 | None:intergenic | 40.0% | |
| AGGAAACAATTACTAGCAGC+AGG | + | chr6_3:7891271-7891290 | Msa0936950:CDS | 40.0% | |
| GTCTCAAAAAGTCTCTGAAC+CGG | - | chr6_3:7891333-7891352 | None:intergenic | 40.0% | |
| AACTTATCAATGTCCTGAGC+TGG | - | chr6_3:7891399-7891418 | None:intergenic | 40.0% | |
| CTCAGGACATTGATAAGTTG+CGG | + | chr6_3:7891400-7891419 | Msa0936950:CDS | 40.0% | |
| ! | GATAAGTTGCGGTCTGTTTT+AGG | + | chr6_3:7891411-7891430 | Msa0936950:CDS | 40.0% |
| !!! | TTATTTTGGCGTCTACACGT+CGG | + | chr6_3:7891635-7891654 | Msa0936950:intron | 40.0% |
| !! | CGGTGTCGAGTTAATTTTCA+TGG | + | chr6_3:7891655-7891674 | Msa0936950:intron | 40.0% |
| ATACTATTGGGTGAGTTGTG+TGG | + | chr6_3:7892086-7892105 | Msa0936950:intron | 40.0% | |
| TACTATTGGGTGAGTTGTGT+GGG | + | chr6_3:7892087-7892106 | Msa0936950:intron | 40.0% | |
| ACACATCACATCTCACACTA+AGG | - | chr6_3:7892153-7892172 | None:intergenic | 40.0% | |
| ACAATGTGATGTCAAGTCCA+TGG | + | chr6_3:7892320-7892339 | Msa0936950:intron | 40.0% | |
| GTCTCATTCACATTAGACCA+TGG | - | chr6_3:7892340-7892359 | None:intergenic | 40.0% | |
| TGTCTATGTCAAAACCCCAT+AGG | + | chr6_3:7892757-7892776 | Msa0936950:intron | 40.0% | |
| ! | TAGCTTCTCTTTTGTGCAGA+TGG | + | chr6_3:7892963-7892982 | Msa0936950:intron | 40.0% |
| GCCCTGAAATATGGCATATT+AGG | - | chr6_3:7893017-7893036 | None:intergenic | 40.0% | |
| GATGCATTTGCCCTGAAATA+TGG | - | chr6_3:7893026-7893045 | None:intergenic | 40.0% | |
| GAAGAGATATCCGAAGTGAA+GGG | - | chr6_3:7893160-7893179 | None:intergenic | 40.0% | |
| TGAAGAGATATCCGAAGTGA+AGG | - | chr6_3:7893161-7893180 | None:intergenic | 40.0% | |
| CATTCACACAGTCAATGCAT+TGG | + | chr6_3:7893179-7893198 | Msa0936950:intron | 40.0% | |
| TGGATCAATATCGGATGGTT+TGG | - | chr6_3:7893262-7893281 | None:intergenic | 40.0% | |
| ACAGTTGGATCAATATCGGA+TGG | - | chr6_3:7893267-7893286 | None:intergenic | 40.0% | |
| GTCAATACAACGGTAACAGT+TGG | - | chr6_3:7893282-7893301 | None:intergenic | 40.0% | |
| TGTAGAGGAATAACACCAGA+AGG | - | chr6_3:7893506-7893525 | None:intergenic | 40.0% | |
| ATTCCTCTACATAATCACCC+TGG | + | chr6_3:7893515-7893534 | Msa0936950:CDS | 40.0% | |
| ATTCCAGGGTGATTATGTAG+AGG | - | chr6_3:7893521-7893540 | None:intergenic | 40.0% | |
| AAAATGGTAGGAGATTCAGG+AGG | - | chr6_3:7893611-7893630 | None:intergenic | 40.0% | |
| TCTGAGGGTTTGAAAATGGT+AGG | - | chr6_3:7893623-7893642 | None:intergenic | 40.0% | |
| ACATTGCAACCGTTAACTTC+AGG | + | chr6_3:7893884-7893903 | Msa0936950:intron | 40.0% | |
| ! | GGTGAAAGTACAGACAAATG+CGG | + | chr6_3:7893905-7893924 | Msa0936950:intron | 40.0% |
| ! | ACTTTTGCTAACCTCAACTC+AGG | - | chr6_3:7894105-7894124 | None:intergenic | 40.0% |
| GTTGAGGTTAGCAAAAGTGA+AGG | + | chr6_3:7894107-7894126 | Msa0936950:CDS | 40.0% | |
| CCCTTCTATCTTATATCCTG+AGG | + | chr6_3:7894158-7894177 | Msa0936950:CDS | 40.0% | |
| ATCTTATATCCTGAGGATGG+TGG | + | chr6_3:7894165-7894184 | Msa0936950:CDS | 40.0% | |
| TGTGCAGTTCTTGATGTTCT+TGG | + | chr6_3:7894219-7894238 | Msa0936950:CDS | 40.0% | |
| CCATCAAGATCAGAATATGG+AGG | - | chr6_3:7894246-7894265 | None:intergenic | 40.0% | |
| CCTCCATATTCTGATCTTGA+TGG | + | chr6_3:7894243-7894262 | Msa0936950:CDS | 40.0% | |
| CTGCCATCAAGATCAGAATA+TGG | - | chr6_3:7894249-7894268 | None:intergenic | 40.0% | |
| ! | TATCCGTTTTCCAACTTTCC+AGG | + | chr6_3:7894291-7894310 | Msa0936950:CDS | 40.0% |
| ATCGTGTAGTCAAGTGATCT+TGG | + | chr6_3:7894468-7894487 | Msa0936950:intron | 40.0% | |
| AGTCAAGTGATCTTGGTTGT+TGG | + | chr6_3:7894475-7894494 | Msa0936950:intron | 40.0% | |
| !! | TTGCGTGACTTTGGAATTCA+CGG | - | chr6_3:7894654-7894673 | None:intergenic | 40.0% |
| TATCCATACCAGAAGAGGAA+AGG | + | chr6_3:7894960-7894979 | Msa0936950:CDS | 40.0% | |
| ATTCCTTTCCTCTTCTGGTA+TGG | - | chr6_3:7894966-7894985 | None:intergenic | 40.0% | |
| GTTGAAGGAAGAATGTACAG+TGG | + | chr6_3:7895031-7895050 | Msa0936950:CDS | 40.0% | |
| TGCTAACTCTCCACAATAGT+TGG | - | chr6_3:7895058-7895077 | None:intergenic | 40.0% | |
| !! | GTGAAGGTTGGTGAAGATTG+AGG | - | chr6_3:7890666-7890685 | None:intergenic | 45.0% |
| AACAGAGGAAACAGGGGAAT+TGG | - | chr6_3:7890874-7890893 | None:intergenic | 45.0% | |
| GAGGAAAACAGAGGAAACAG+GGG | - | chr6_3:7890880-7890899 | None:intergenic | 45.0% | |
| CAGAGGAAAACAGAGGAAAC+AGG | - | chr6_3:7890882-7890901 | None:intergenic | 45.0% | |
| AACAGAGGAAACAGGGGAAT+TGG | - | chr6_3:7890874-7890893 | None:intergenic | 45.0% | |
| CAATTACTAGCAGCAGGTCA+AGG | + | chr6_3:7891277-7891296 | Msa0936950:CDS | 45.0% | |
| TCAAAAAGTCTCTGAACCGG+CGG | - | chr6_3:7891330-7891349 | None:intergenic | 45.0% | |
| ! | GTCTTTGCTAATAGTGGGAC+AGG | + | chr6_3:7891363-7891382 | Msa0936950:CDS | 45.0% |
| TATCAATGTCCTGAGCTGGT+GGG | - | chr6_3:7891395-7891414 | None:intergenic | 45.0% | |
| TTATCAATGTCCTGAGCTGG+TGG | - | chr6_3:7891396-7891415 | None:intergenic | 45.0% | |
| AATGTGTCACAGTGTCGTGT+CGG | - | chr6_3:7891585-7891604 | None:intergenic | 45.0% | |
| TCAAAGTACACCGACATGAC+AGG | + | chr6_3:7891766-7891785 | Msa0936950:intron | 45.0% | |
| CAAAGTACACCGACATGACA+GGG | + | chr6_3:7891767-7891786 | Msa0936950:intron | 45.0% | |
| AGTATGTGTCCCTGTCATGT+CGG | - | chr6_3:7891779-7891798 | None:intergenic | 45.0% | |
| ! | TCCTTATTGGTGTCCCTGTT+TGG | + | chr6_3:7891855-7891874 | Msa0936950:intron | 45.0% |
| ACCAAACAGGGACACCAATA+AGG | - | chr6_3:7891859-7891878 | None:intergenic | 45.0% | |
| CAAGAAACGGACACCAAACA+GGG | - | chr6_3:7891871-7891890 | None:intergenic | 45.0% | |
| ACAAGAAACGGACACCAAAC+AGG | - | chr6_3:7891872-7891891 | None:intergenic | 45.0% | |
| ACTATTGGGTGAGTTGTGTG+GGG | + | chr6_3:7892088-7892107 | Msa0936950:intron | 45.0% | |
| GGCTTAAAGCCTATAAGCCT+AGG | + | chr6_3:7892691-7892710 | Msa0936950:intron | 45.0% | |
| GGATCCAAGTCAACATCTTC+TGG | - | chr6_3:7892996-7893015 | None:intergenic | 45.0% | |
| ! | ACTGTTCGATCTGAAACCAG+CGG | - | chr6_3:7893208-7893227 | None:intergenic | 45.0% |
| AGAGGAATAACACCAGAAGG+TGG | - | chr6_3:7893503-7893522 | None:intergenic | 45.0% | |
| ATGCGGCTGTAACTTAGTCA+CGG | + | chr6_3:7893922-7893941 | Msa0936950:intron | 45.0% | |
| ! | AGGGAAAGTACGGACAAATG+TGG | + | chr6_3:7893974-7893993 | Msa0936950:intron | 45.0% |
| TTCATGATTGCGTGACGAGA+TGG | + | chr6_3:7894591-7894610 | Msa0936950:intron | 45.0% | |
| TTTGTGCCTGTACGCAATCT+AGG | + | chr6_3:7894837-7894856 | Msa0936950:intron | 45.0% | |
| AGGACTATCCATACCAGAAG+AGG | + | chr6_3:7894955-7894974 | Msa0936950:CDS | 45.0% | |
| GTACAGTGGTCCAACTATTG+TGG | + | chr6_3:7895045-7895064 | Msa0936950:CDS | 45.0% | |
| TTACTAGCAGCAGGTCAAGG+AGG | + | chr6_3:7891280-7891299 | Msa0936950:CDS | 50.0% | |
| !! | TGCGGTCTGTTTTAGGTACG+AGG | + | chr6_3:7891418-7891437 | Msa0936950:intron | 50.0% |
| CTATTGGGTGAGTTGTGTGG+GGG | + | chr6_3:7892089-7892108 | Msa0936950:intron | 50.0% | |
| TATTGGGTGAGTTGTGTGGG+GGG | + | chr6_3:7892090-7892109 | Msa0936950:intron | 50.0% | |
| GCGTCTGTGTAAGTGGTTCA+TGG | + | chr6_3:7892868-7892887 | Msa0936950:intron | 50.0% | |
| GGGCAAATGCATCTCACAGA+AGG | + | chr6_3:7893033-7893052 | Msa0936950:CDS | 50.0% | |
| ! | CAACTGCGGTGGTTTGGATA+TGG | - | chr6_3:7893847-7893866 | None:intergenic | 50.0% |
| CAACTACAACTGCGGTGGTT+TGG | - | chr6_3:7893853-7893872 | None:intergenic | 50.0% | |
| AACCACCGCAGTTGTAGTTG+CGG | + | chr6_3:7893853-7893872 | Msa0936950:intron | 50.0% | |
| GGTAACCGCAACTACAACTG+CGG | - | chr6_3:7893861-7893880 | None:intergenic | 50.0% | |
| ATGTTGCAGGTCCTGAGTTG+AGG | + | chr6_3:7894091-7894110 | Msa0936950:intron | 50.0% | |
| ! | CTTTTACTGCGGAGAATCCG+AGG | - | chr6_3:7894438-7894457 | None:intergenic | 50.0% |
| AGGAATTGTCCCACCAGCTC+AGG | + | chr6_3:7891383-7891402 | Msa0936950:CDS | 55.0% | |
| CTGTGTCGCGTCTGTGTAAG+TGG | + | chr6_3:7892861-7892880 | Msa0936950:intron | 55.0% | |
| AACCGCAACTACAACTGCGG+TGG | - | chr6_3:7893858-7893877 | None:intergenic | 55.0% | |
| TGCAAGTTGCCACCATCCTC+AGG | - | chr6_3:7894177-7894196 | None:intergenic | 55.0% | |
| GTGGGACCTAGATTGCGTAC+AGG | - | chr6_3:7894846-7894865 | None:intergenic | 55.0% | |
| GCAGCAGGTCAAGGAGGAAC+CGG | + | chr6_3:7891286-7891305 | Msa0936950:CDS | 60.0% | |
| GCATCTTCTTCTGACGCCGC+CGG | - | chr6_3:7891308-7891327 | None:intergenic | 60.0% | |
| GCGTCAGAAGAAGATGCCGC+CGG | + | chr6_3:7891311-7891330 | Msa0936950:CDS | 60.0% | |
| ! | GTCAATGCATTGGCGACCGC+TGG | + | chr6_3:7893189-7893208 | Msa0936950:intron | 60.0% |
| GCAGGTCAAGGAGGAACCGG+CGG | + | chr6_3:7891289-7891308 | Msa0936950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 7890547 | 7895375 | 7890547 | ID=Msa0936950;Name=Msa0936950 |
| chr6_3 | mRNA | 7890547 | 7895375 | 7890547 | ID=Msa0936950-mRNA-1;Parent=Msa0936950;Name=Msa0936950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=292|1|1|1|0.8|0.66|6|300|279 |
| chr6_3 | exon | 7890547 | 7890799 | 7890547 | ID=Msa0936950-mRNA-1:exon:2617;Parent=Msa0936950-mRNA-1 |
| chr6_3 | exon | 7891174 | 7891432 | 7891174 | ID=Msa0936950-mRNA-1:exon:2618;Parent=Msa0936950-mRNA-1 |
| chr6_3 | exon | 7892982 | 7893100 | 7892982 | ID=Msa0936950-mRNA-1:exon:2619;Parent=Msa0936950-mRNA-1 |
| chr6_3 | exon | 7893482 | 7893644 | 7893482 | ID=Msa0936950-mRNA-1:exon:2620;Parent=Msa0936950-mRNA-1 |
| chr6_3 | exon | 7894100 | 7894312 | 7894100 | ID=Msa0936950-mRNA-1:exon:2621;Parent=Msa0936950-mRNA-1 |
| chr6_3 | exon | 7894951 | 7895375 | 7894951 | ID=Msa0936950-mRNA-1:exon:2622;Parent=Msa0936950-mRNA-1 |
| chr6_3 | five_prime_UTR | 7890547 | 7890799 | 7890547 | ID=Msa0936950-mRNA-1:five_prime_utr;Parent=Msa0936950-mRNA-1 |
| chr6_3 | five_prime_UTR | 7891174 | 7891212 | 7891174 | ID=Msa0936950-mRNA-1:five_prime_utr;Parent=Msa0936950-mRNA-1 |
| chr6_3 | CDS | 7891213 | 7891432 | 7891213 | ID=Msa0936950-mRNA-1:cds;Parent=Msa0936950-mRNA-1 |
| chr6_3 | CDS | 7892982 | 7893100 | 7892982 | ID=Msa0936950-mRNA-1:cds;Parent=Msa0936950-mRNA-1 |
| chr6_3 | CDS | 7893482 | 7893644 | 7893482 | ID=Msa0936950-mRNA-1:cds;Parent=Msa0936950-mRNA-1 |
| chr6_3 | CDS | 7894100 | 7894312 | 7894100 | ID=Msa0936950-mRNA-1:cds;Parent=Msa0936950-mRNA-1 |
| chr6_3 | CDS | 7894951 | 7895075 | 7894951 | ID=Msa0936950-mRNA-1:cds;Parent=Msa0936950-mRNA-1 |
| chr6_3 | three_prime_UTR | 7895076 | 7895375 | 7895076 | ID=Msa0936950-mRNA-1:three_prime_utr;Parent=Msa0936950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
