Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332370 | XP_003609475.2 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 2.28e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332370 | G7JGL2 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 1.09e-36 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067060 | Msa1332370 | 0.802579 | 5.245977e-49 | -8.615850e-47 |
| Msa0711010 | Msa1332370 | 0.806703 | 7.230732e-50 | -8.615850e-47 |
| Msa0778600 | Msa1332370 | 0.806056 | 9.900307e-50 | -8.615850e-47 |
| Msa0141640 | Msa1332370 | 0.800147 | 1.652079e-48 | -8.615850e-47 |
| Msa0223090 | Msa1332370 | 0.821640 | 3.625917e-53 | -8.615850e-47 |
| Msa0223300 | Msa1332370 | 0.818652 | 1.752544e-52 | -8.615850e-47 |
| Msa0223370 | Msa1332370 | 0.819541 | 1.100115e-52 | -8.615850e-47 |
| Msa1332370 | Msa1333830 | 0.993355 | 3.638634e-199 | -8.615850e-47 |
| Msa1332370 | Msa1364410 | 0.800495 | 1.402915e-48 | -8.615850e-47 |
| Msa1332370 | Msa1404870 | 0.815128 | 1.083482e-51 | -8.615850e-47 |
| Msa0302640 | Msa1332370 | 0.812588 | 3.931204e-51 | -8.615850e-47 |
| Msa0339880 | Msa1332370 | 0.813231 | 2.841723e-51 | -8.615850e-47 |
| Msa1116660 | Msa1332370 | 0.808492 | 3.015668e-50 | -8.615850e-47 |
| Msa1162880 | Msa1332370 | 0.805919 | 1.057685e-49 | -8.615850e-47 |
| Msa1215330 | Msa1332370 | 0.813642 | 2.308687e-51 | -8.615850e-47 |
| Msa1215580 | Msa1332370 | 0.803401 | 3.547998e-49 | -8.615850e-47 |
| Msa1215690 | Msa1332370 | 0.995894 | 4.611261e-221 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332370 | MtrunA17_Chr4g0064861 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 2.10e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTTCTTCTTCTTAGA+AGG | 0.292012 | 8_4:+52358474 | None:intergenic |
| GTGGTTTCATCTCTCGCCTT+TGG | 0.343143 | 8_4:-52359990 | Msa1332370:CDS |
| ACTTTGGGTTTGGTCCCGTT+AGG | 0.390048 | 8_4:+52360081 | None:intergenic |
| GAGGAGGTAAGCGAGGGATT+TGG | 0.392521 | 8_4:+52359899 | None:intergenic |
| GAGGGTGTGTGCGGGAACTT+TGG | 0.410958 | 8_4:+52360065 | None:intergenic |
| AGGGTGTGTGCGGGAACTTT+GGG | 0.417124 | 8_4:+52360066 | None:intergenic |
| ATCCTCATCGTCGTCGTCCT+CGG | 0.425481 | 8_4:+52358713 | None:intergenic |
| GTGTGCGGGAACTTTGGGTT+TGG | 0.425723 | 8_4:+52360071 | None:intergenic |
| TCACTTCCTCCTGCACCGTT+TGG | 0.426939 | 8_4:+52358594 | None:intergenic |
| CTTTGGGTTTGGTCCCGTTA+GGG | 0.437105 | 8_4:+52360082 | None:intergenic |
| CCTCCTGCACCGTTTGGCAC+AGG | 0.503261 | 8_4:+52358600 | None:intergenic |
| GATCGAGTTGTTGTTTCCAA+AGG | 0.517156 | 8_4:+52359974 | None:intergenic |
| TTTGGCACAGGATCGTCCTC+AGG | 0.525514 | 8_4:+52358612 | None:intergenic |
| CATTTCTTCTTCTTAGAAGG+TGG | 0.536270 | 8_4:+52358477 | None:intergenic |
| ATCTTCGTCATCTTCATCAC+CGG | 0.553872 | 8_4:+52358641 | None:intergenic |
| CAATCATTTGATATCACCAA+TGG | 0.555785 | 8_4:-52358955 | Msa1332370:CDS |
| TGAGGATGAAGACGAAGAAG+AGG | 0.579512 | 8_4:-52358517 | Msa1332370:CDS |
| TGATATCACCAATGGATGGA+AGG | 0.586037 | 8_4:-52358947 | Msa1332370:intron |
| GACGATGATGAGGACTTCTC+CGG | 0.589732 | 8_4:-52358660 | Msa1332370:CDS |
| CGCTATGAGGAGGTAAGCGA+GGG | 0.590126 | 8_4:+52359893 | None:intergenic |
| GAAATCGAGAGGGTGTGTGC+GGG | 0.591974 | 8_4:+52360057 | None:intergenic |
| AGAAATCGAGAGGGTGTGTG+CGG | 0.592587 | 8_4:+52360056 | None:intergenic |
| GAGGACGATCCTGTGCCAAA+CGG | 0.593735 | 8_4:-52358609 | Msa1332370:CDS |
| CATTTGATATCACCAATGGA+TGG | 0.597818 | 8_4:-52358951 | Msa1332370:CDS |
| GATGACGATGACAATGATGA+TGG | 0.606368 | 8_4:-52358546 | Msa1332370:CDS |
| CCTGTGCCAAACGGTGCAGG+AGG | 0.611521 | 8_4:-52358600 | Msa1332370:CDS |
| AACCGAGGACGACGACGATG+AGG | 0.613539 | 8_4:-52358715 | Msa1332370:CDS |
| ATAGGAAGTATACCGCTATG+AGG | 0.615472 | 8_4:+52359880 | None:intergenic |
| CCGCTATGAGGAGGTAAGCG+AGG | 0.617664 | 8_4:+52359892 | None:intergenic |
| CAATGATGATGGAGAAGATG+AGG | 0.624046 | 8_4:-52358535 | Msa1332370:CDS |
| AGGAAGTGATGACGATGATG+AGG | 0.631982 | 8_4:-52358580 | Msa1332370:CDS |
| AGTACTCACAGCGGCAACAA+TGG | 0.635632 | 8_4:-52360012 | Msa1332370:exon |
| GGAAGTATACCGCTATGAGG+AGG | 0.668264 | 8_4:+52359883 | None:intergenic |
| TGACGAAGATGCTGATCCTG+AGG | 0.669694 | 8_4:-52358628 | Msa1332370:CDS |
| ACTCACAGCGGCAACAATGG+TGG | 0.673138 | 8_4:-52360009 | Msa1332370:exon |
| CAAAGATGGTAGTGAAACCG+AGG | 0.679946 | 8_4:-52358730 | Msa1332370:intron |
| GCTTCGCTAGAGAAATCGAG+AGG | 0.686022 | 8_4:+52360046 | None:intergenic |
| TGACGATGATGTGAATGATG+AGG | 0.694178 | 8_4:-52358688 | Msa1332370:CDS |
| TGAGGATGATGACGATGATG+AGG | 0.697122 | 8_4:-52358670 | Msa1332370:CDS |
| CTTCGCTAGAGAAATCGAGA+GGG | 0.706182 | 8_4:+52360047 | None:intergenic |
| CCTCGCTTACCTCCTCATAG+CGG | 0.734427 | 8_4:-52359892 | Msa1332370:intron |
| CAGCAGCACAGTACTCACAG+CGG | 0.771096 | 8_4:-52360021 | Msa1332370:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_4:52359770-52359789 | None:intergenic | 10.0% |
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_4:52359770-52359789 | None:intergenic | 10.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_4:52358930-52358949 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_4:52358931-52358950 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_4:52359247-52359266 | None:intergenic | 15.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_4:52358930-52358949 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_4:52358931-52358950 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_4:52359247-52359266 | None:intergenic | 15.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_4:52358936-52358955 | Msa1332370:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_4:52359240-52359259 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_4:52359678-52359697 | None:intergenic | 20.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_4:52358936-52358955 | Msa1332370:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_4:52359240-52359259 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_4:52359678-52359697 | None:intergenic | 20.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_4:52358485-52358504 | Msa1332370:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_4:52358794-52358813 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_4:52358795-52358814 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_4:52359090-52359109 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_4:52359095-52359114 | Msa1332370:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_4:52359096-52359115 | Msa1332370:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_4:52359338-52359357 | Msa1332370:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_4:52359502-52359521 | Msa1332370:intron | 25.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_4:52358485-52358504 | Msa1332370:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_4:52358794-52358813 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_4:52358795-52358814 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_4:52359090-52359109 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_4:52359095-52359114 | Msa1332370:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_4:52359096-52359115 | Msa1332370:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_4:52359338-52359357 | Msa1332370:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_4:52359502-52359521 | Msa1332370:intron | 25.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_4:52358486-52358505 | Msa1332370:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_4:52358722-52358741 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_4:52358824-52358843 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_4:52358824-52358843 | Msa1332370:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_4:52358825-52358844 | Msa1332370:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_4:52359056-52359075 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_4:52359062-52359081 | Msa1332370:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_4:52359128-52359147 | Msa1332370:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_4:52359143-52359162 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_4:52359146-52359165 | Msa1332370:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_4:52359147-52359166 | Msa1332370:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_4:52359293-52359312 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_4:52359294-52359313 | Msa1332370:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_4:52359505-52359524 | Msa1332370:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_4:52359626-52359645 | Msa1332370:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_4:52359645-52359664 | None:intergenic | 30.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_4:52358486-52358505 | Msa1332370:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_4:52358722-52358741 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_4:52358824-52358843 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_4:52358824-52358843 | Msa1332370:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_4:52358825-52358844 | Msa1332370:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_4:52359056-52359075 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_4:52359062-52359081 | Msa1332370:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_4:52359128-52359147 | Msa1332370:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_4:52359143-52359162 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_4:52359146-52359165 | Msa1332370:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_4:52359147-52359166 | Msa1332370:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_4:52359293-52359312 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_4:52359294-52359313 | Msa1332370:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_4:52359505-52359524 | Msa1332370:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_4:52359626-52359645 | Msa1332370:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_4:52359645-52359664 | None:intergenic | 30.0% |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_4:52358873-52358892 | Msa1332370:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_4:52358980-52358999 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_4:52359057-52359076 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_4:52359168-52359187 | Msa1332370:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_4:52359295-52359314 | Msa1332370:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_4:52359328-52359347 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTTTTCTCCAGAC+TGG | - | chr8_4:52359585-52359604 | Msa1332370:intron | 35.0% |
| CATTTGATATCACCAATGGA+TGG | - | chr8_4:52359630-52359649 | Msa1332370:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_4:52359836-52359855 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_4:52359837-52359856 | Msa1332370:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_4:52360107-52360126 | None:intergenic | 35.0% | |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_4:52358873-52358892 | Msa1332370:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_4:52358980-52358999 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_4:52359057-52359076 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_4:52359168-52359187 | Msa1332370:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_4:52359295-52359314 | Msa1332370:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_4:52359328-52359347 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTTTTCTCCAGAC+TGG | - | chr8_4:52359585-52359604 | Msa1332370:intron | 35.0% |
| CATTTGATATCACCAATGGA+TGG | - | chr8_4:52359630-52359649 | Msa1332370:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_4:52359836-52359855 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_4:52359837-52359856 | Msa1332370:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_4:52360107-52360126 | None:intergenic | 35.0% | |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_4:52358610-52358629 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_4:52358704-52358723 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_4:52358832-52358851 | Msa1332370:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_4:52359009-52359028 | Msa1332370:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_4:52359301-52359320 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_4:52359326-52359345 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_4:52359327-52359346 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_4:52359399-52359418 | Msa1332370:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_4:52359634-52359653 | Msa1332370:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_4:52359826-52359845 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_4:52359893-52359912 | Msa1332370:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_4:52359943-52359962 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_4:52360035-52360054 | Msa1332370:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_4:52360046-52360065 | Msa1332370:five_prime_UTR | 40.0% |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_4:52358610-52358629 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_4:52358704-52358723 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_4:52358832-52358851 | Msa1332370:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_4:52359009-52359028 | Msa1332370:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_4:52359301-52359320 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_4:52359326-52359345 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_4:52359327-52359346 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_4:52359399-52359418 | Msa1332370:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_4:52359634-52359653 | Msa1332370:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_4:52359826-52359845 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_4:52359893-52359912 | Msa1332370:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_4:52359943-52359962 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_4:52360035-52360054 | Msa1332370:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_4:52360046-52360065 | Msa1332370:five_prime_UTR | 40.0% |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_4:52358537-52358556 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_4:52358851-52358870 | Msa1332370:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_4:52359072-52359091 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_4:52359409-52359428 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_4:52359412-52359431 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_4:52359602-52359621 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_4:52359706-52359725 | Msa1332370:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_4:52359707-52359726 | Msa1332370:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_4:52359715-52359734 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_4:52359721-52359740 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_4:52359718-52359737 | Msa1332370:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_4:52359810-52359829 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_4:52359851-52359870 | Msa1332370:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_4:52359884-52359903 | Msa1332370:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_4:52360001-52360020 | Msa1332370:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_4:52360064-52360083 | Msa1332370:five_prime_UTR | 45.0% | |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_4:52358537-52358556 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_4:52358851-52358870 | Msa1332370:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_4:52359072-52359091 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_4:52359409-52359428 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_4:52359412-52359431 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_4:52359602-52359621 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_4:52359706-52359725 | Msa1332370:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_4:52359707-52359726 | Msa1332370:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_4:52359715-52359734 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_4:52359721-52359740 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_4:52359718-52359737 | Msa1332370:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_4:52359810-52359829 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_4:52359851-52359870 | Msa1332370:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_4:52359884-52359903 | Msa1332370:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_4:52360001-52360020 | Msa1332370:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_4:52360064-52360083 | Msa1332370:five_prime_UTR | 45.0% | |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_4:52359781-52359800 | Msa1332370:intron | 5.0% |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_4:52359781-52359800 | Msa1332370:intron | 5.0% |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_4:52358502-52358521 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_4:52358503-52358522 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_4:52358528-52358547 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_4:52358538-52358557 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_4:52358569-52358588 | Msa1332370:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_4:52358591-52358610 | Msa1332370:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_4:52358701-52358720 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_4:52359921-52359940 | Msa1332370:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_4:52359953-52359972 | Msa1332370:CDS | 50.0% | |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_4:52358502-52358521 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_4:52358503-52358522 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_4:52358528-52358547 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_4:52358538-52358557 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_4:52358569-52358588 | Msa1332370:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_4:52358591-52358610 | Msa1332370:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_4:52358701-52358720 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_4:52359921-52359940 | Msa1332370:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_4:52359953-52359972 | Msa1332370:CDS | 50.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_4:52358513-52358532 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_4:52358518-52358537 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_4:52358527-52358546 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_4:52358560-52358579 | Msa1332370:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_4:52358572-52358591 | Msa1332370:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_4:52358685-52358704 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_4:52358691-52358710 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_4:52358689-52358708 | Msa1332370:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_4:52359871-52359890 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_4:52359972-52359991 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_4:52359972-52359991 | Msa1332370:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_4:52359990-52360009 | None:intergenic | 55.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_4:52358513-52358532 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_4:52358518-52358537 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_4:52358527-52358546 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_4:52358560-52358579 | Msa1332370:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_4:52358572-52358591 | Msa1332370:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_4:52358685-52358704 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_4:52358691-52358710 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_4:52358689-52358708 | Msa1332370:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_4:52359871-52359890 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_4:52359972-52359991 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_4:52359972-52359991 | Msa1332370:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_4:52359990-52360009 | None:intergenic | 55.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_4:52358519-52358538 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_4:52358692-52358711 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_4:52359866-52359885 | Msa1332370:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_4:52359978-52359997 | Msa1332370:CDS | 60.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_4:52358519-52358538 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_4:52358692-52358711 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_4:52359866-52359885 | Msa1332370:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_4:52359978-52359997 | Msa1332370:CDS | 60.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_4:52359984-52360003 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_4:52359981-52360000 | Msa1332370:CDS | 65.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_4:52359984-52360003 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_4:52359981-52360000 | Msa1332370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52358476 | 52360127 | 52358476 | ID=Msa1332370;Name=Msa1332370 |
| chr8_4 | mRNA | 52358476 | 52360127 | 52358476 | ID=Msa1332370-mRNA-1;Parent=Msa1332370;Name=Msa1332370-mRNA-1;_AED=0.26;_eAED=0.26;_QI=112|0.5|0.66|1|1|1|3|0|146 |
| chr8_4 | exon | 52358476 | 52358740 | 52358476 | ID=Msa1332370-mRNA-1:exon:15705;Parent=Msa1332370-mRNA-1 |
| chr8_4 | exon | 52358948 | 52359000 | 52358948 | ID=Msa1332370-mRNA-1:exon:15704;Parent=Msa1332370-mRNA-1 |
| chr8_4 | exon | 52359893 | 52360127 | 52359893 | ID=Msa1332370-mRNA-1:exon:15703;Parent=Msa1332370-mRNA-1 |
| chr8_4 | five_prime_UTR | 52360016 | 52360127 | 52360016 | ID=Msa1332370-mRNA-1:five_prime_utr;Parent=Msa1332370-mRNA-1 |
| chr8_4 | CDS | 52359893 | 52360015 | 52359893 | ID=Msa1332370-mRNA-1:cds;Parent=Msa1332370-mRNA-1 |
| chr8_4 | CDS | 52358948 | 52359000 | 52358948 | ID=Msa1332370-mRNA-1:cds;Parent=Msa1332370-mRNA-1 |
| chr8_4 | CDS | 52358476 | 52358740 | 52358476 | ID=Msa1332370-mRNA-1:cds;Parent=Msa1332370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
