Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333830 | G7JGL2 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 1.09e-36 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711010 | Msa1333830 | 0.808739 | 2.671480e-50 | -8.615850e-47 |
| Msa0778600 | Msa1333830 | 0.806944 | 6.431917e-50 | -8.615850e-47 |
| Msa0223090 | Msa1333830 | 0.818461 | 1.936528e-52 | -8.615850e-47 |
| Msa0223300 | Msa1333830 | 0.815379 | 9.528101e-52 | -8.615850e-47 |
| Msa0223370 | Msa1333830 | 0.814860 | 1.242536e-51 | -8.615850e-47 |
| Msa1332370 | Msa1333830 | 0.993355 | 3.638634e-199 | -8.615850e-47 |
| Msa1333830 | Msa1404870 | 0.811978 | 5.341873e-51 | -8.615850e-47 |
| Msa0302640 | Msa1333830 | 0.809066 | 2.273106e-50 | -8.615850e-47 |
| Msa0339880 | Msa1333830 | 0.808914 | 2.449957e-50 | -8.615850e-47 |
| Msa1116660 | Msa1333830 | 0.801503 | 8.733643e-49 | -8.615850e-47 |
| Msa1215330 | Msa1333830 | 0.808793 | 2.601205e-50 | -8.615850e-47 |
| Msa1215690 | Msa1333830 | 0.990210 | 1.446089e-181 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333830 | MtrunA17_Chr4g0064861 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 2.10e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTTCTTCTTCTTAGA+AGG | 0.292012 | 8_4:+54127504 | None:intergenic |
| GTGGTTTCATCTCTCGCCTT+TGG | 0.343143 | 8_4:-54129018 | Msa1333830:CDS |
| ACTTTGGGTTTGGTCCCGTT+AGG | 0.390048 | 8_4:+54129109 | None:intergenic |
| GAGGAGGTAAGCGAGGGATT+TGG | 0.392521 | 8_4:+54128927 | None:intergenic |
| GAGGGTGTGTGCGGGAACTT+TGG | 0.410958 | 8_4:+54129093 | None:intergenic |
| AGGGTGTGTGCGGGAACTTT+GGG | 0.417124 | 8_4:+54129094 | None:intergenic |
| ATCCTCATCGTCGTCGTCCT+CGG | 0.425481 | 8_4:+54127743 | None:intergenic |
| GTGTGCGGGAACTTTGGGTT+TGG | 0.425723 | 8_4:+54129099 | None:intergenic |
| TCACTTCCTCCTGCACCGTT+TGG | 0.426939 | 8_4:+54127624 | None:intergenic |
| CTTTGGGTTTGGTCCCGTTA+GGG | 0.437105 | 8_4:+54129110 | None:intergenic |
| CCTCCTGCACCGTTTGGCAC+AGG | 0.503261 | 8_4:+54127630 | None:intergenic |
| GATCGAGTTGTTGTTTCCAA+AGG | 0.517156 | 8_4:+54129002 | None:intergenic |
| TTTGGCACAGGATCGTCCTC+AGG | 0.525514 | 8_4:+54127642 | None:intergenic |
| CATTTCTTCTTCTTAGAAGG+TGG | 0.536270 | 8_4:+54127507 | None:intergenic |
| ATCTTCGTCATCTTCATCAC+CGG | 0.553872 | 8_4:+54127671 | None:intergenic |
| CAATCATTTGATATCACCAA+TGG | 0.555785 | 8_4:-54127985 | Msa1333830:CDS |
| TGAGGATGAAGACGAAGAAG+AGG | 0.579512 | 8_4:-54127547 | Msa1333830:CDS |
| TGATATCACCAATGGATGGA+AGG | 0.586037 | 8_4:-54127977 | Msa1333830:intron |
| GACGATGATGAGGACTTCTC+CGG | 0.589732 | 8_4:-54127690 | Msa1333830:CDS |
| CGCTATGAGGAGGTAAGCGA+GGG | 0.590126 | 8_4:+54128921 | None:intergenic |
| GAAATCGAGAGGGTGTGTGC+GGG | 0.591974 | 8_4:+54129085 | None:intergenic |
| AGAAATCGAGAGGGTGTGTG+CGG | 0.592587 | 8_4:+54129084 | None:intergenic |
| GAGGACGATCCTGTGCCAAA+CGG | 0.593735 | 8_4:-54127639 | Msa1333830:CDS |
| CATTTGATATCACCAATGGA+TGG | 0.597818 | 8_4:-54127981 | Msa1333830:CDS |
| GATGACGATGACAATGATGA+TGG | 0.606368 | 8_4:-54127576 | Msa1333830:CDS |
| CCTGTGCCAAACGGTGCAGG+AGG | 0.611521 | 8_4:-54127630 | Msa1333830:CDS |
| AACCGAGGACGACGACGATG+AGG | 0.613539 | 8_4:-54127745 | Msa1333830:CDS |
| ATAGGAAGTATACCGCTATG+AGG | 0.615472 | 8_4:+54128908 | None:intergenic |
| CCGCTATGAGGAGGTAAGCG+AGG | 0.617664 | 8_4:+54128920 | None:intergenic |
| CAATGATGATGGAGAAGATG+AGG | 0.624046 | 8_4:-54127565 | Msa1333830:CDS |
| AGGAAGTGATGACGATGATG+AGG | 0.631982 | 8_4:-54127610 | Msa1333830:CDS |
| AGTACTCACAGCGGCAACAA+TGG | 0.635632 | 8_4:-54129040 | Msa1333830:exon |
| GGAAGTATACCGCTATGAGG+AGG | 0.668264 | 8_4:+54128911 | None:intergenic |
| TGACGAAGATGCTGATCCTG+AGG | 0.669694 | 8_4:-54127658 | Msa1333830:CDS |
| ACTCACAGCGGCAACAATGG+TGG | 0.673138 | 8_4:-54129037 | Msa1333830:exon |
| CAAAGATGGTAGTGAAACCG+AGG | 0.679946 | 8_4:-54127760 | Msa1333830:intron |
| GCTTCGCTAGAGAAATCGAG+AGG | 0.686022 | 8_4:+54129074 | None:intergenic |
| TGACGATGATGTGAATGATG+AGG | 0.694178 | 8_4:-54127718 | Msa1333830:CDS |
| TGAGGATGATGACGATGATG+AGG | 0.697122 | 8_4:-54127700 | Msa1333830:CDS |
| CTTCGCTAGAGAAATCGAGA+GGG | 0.706182 | 8_4:+54129075 | None:intergenic |
| CCTCGCTTACCTCCTCATAG+CGG | 0.734427 | 8_4:-54128920 | Msa1333830:intron |
| CAGCAGCACAGTACTCACAG+CGG | 0.771096 | 8_4:-54129049 | Msa1333830:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_4:54128798-54128817 | None:intergenic | 10.0% |
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_4:54128798-54128817 | None:intergenic | 10.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_4:54127960-54127979 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_4:54127961-54127980 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_4:54128277-54128296 | None:intergenic | 15.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_4:54127960-54127979 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_4:54127961-54127980 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_4:54128277-54128296 | None:intergenic | 15.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_4:54127966-54127985 | Msa1333830:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_4:54128270-54128289 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_4:54128706-54128725 | None:intergenic | 20.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_4:54127966-54127985 | Msa1333830:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_4:54128270-54128289 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_4:54128706-54128725 | None:intergenic | 20.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_4:54127515-54127534 | Msa1333830:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_4:54127824-54127843 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_4:54127825-54127844 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_4:54128120-54128139 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_4:54128125-54128144 | Msa1333830:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_4:54128126-54128145 | Msa1333830:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_4:54128368-54128387 | Msa1333830:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_4:54128532-54128551 | Msa1333830:intron | 25.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_4:54127515-54127534 | Msa1333830:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_4:54127824-54127843 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_4:54127825-54127844 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_4:54128120-54128139 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_4:54128125-54128144 | Msa1333830:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_4:54128126-54128145 | Msa1333830:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_4:54128368-54128387 | Msa1333830:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_4:54128532-54128551 | Msa1333830:intron | 25.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_4:54127516-54127535 | Msa1333830:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_4:54127752-54127771 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_4:54127854-54127873 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_4:54127854-54127873 | Msa1333830:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_4:54127855-54127874 | Msa1333830:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_4:54128086-54128105 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_4:54128092-54128111 | Msa1333830:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_4:54128158-54128177 | Msa1333830:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_4:54128173-54128192 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_4:54128176-54128195 | Msa1333830:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_4:54128177-54128196 | Msa1333830:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_4:54128323-54128342 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_4:54128324-54128343 | Msa1333830:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_4:54128535-54128554 | Msa1333830:intron | 30.0% |
| !!! | TTGTTTTTTTTTCTCCAGAC+TGG | - | chr8_4:54128613-54128632 | Msa1333830:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_4:54128654-54128673 | Msa1333830:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_4:54128673-54128692 | None:intergenic | 30.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_4:54127516-54127535 | Msa1333830:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_4:54127752-54127771 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_4:54127854-54127873 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_4:54127854-54127873 | Msa1333830:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_4:54127855-54127874 | Msa1333830:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_4:54128086-54128105 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_4:54128092-54128111 | Msa1333830:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_4:54128158-54128177 | Msa1333830:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_4:54128173-54128192 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_4:54128176-54128195 | Msa1333830:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_4:54128177-54128196 | Msa1333830:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_4:54128323-54128342 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_4:54128324-54128343 | Msa1333830:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_4:54128535-54128554 | Msa1333830:intron | 30.0% |
| !!! | TTGTTTTTTTTTCTCCAGAC+TGG | - | chr8_4:54128613-54128632 | Msa1333830:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_4:54128654-54128673 | Msa1333830:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_4:54128673-54128692 | None:intergenic | 30.0% |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_4:54127903-54127922 | Msa1333830:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_4:54128010-54128029 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_4:54128087-54128106 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_4:54128198-54128217 | Msa1333830:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_4:54128325-54128344 | Msa1333830:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_4:54128358-54128377 | None:intergenic | 35.0% | |
| CATTTGATATCACCAATGGA+TGG | - | chr8_4:54128658-54128677 | Msa1333830:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_4:54128864-54128883 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_4:54128865-54128884 | Msa1333830:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_4:54129135-54129154 | None:intergenic | 35.0% | |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_4:54127903-54127922 | Msa1333830:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_4:54128010-54128029 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_4:54128087-54128106 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_4:54128198-54128217 | Msa1333830:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_4:54128325-54128344 | Msa1333830:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_4:54128358-54128377 | None:intergenic | 35.0% | |
| CATTTGATATCACCAATGGA+TGG | - | chr8_4:54128658-54128677 | Msa1333830:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_4:54128864-54128883 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_4:54128865-54128884 | Msa1333830:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_4:54129135-54129154 | None:intergenic | 35.0% | |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_4:54127640-54127659 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_4:54127734-54127753 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_4:54127862-54127881 | Msa1333830:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_4:54128039-54128058 | Msa1333830:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_4:54128331-54128350 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_4:54128356-54128375 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_4:54128357-54128376 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_4:54128429-54128448 | Msa1333830:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_4:54128662-54128681 | Msa1333830:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_4:54128854-54128873 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_4:54128921-54128940 | Msa1333830:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_4:54128971-54128990 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_4:54129063-54129082 | Msa1333830:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_4:54129074-54129093 | Msa1333830:five_prime_UTR | 40.0% |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_4:54127640-54127659 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_4:54127734-54127753 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_4:54127862-54127881 | Msa1333830:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_4:54128039-54128058 | Msa1333830:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_4:54128331-54128350 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_4:54128356-54128375 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_4:54128357-54128376 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_4:54128429-54128448 | Msa1333830:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_4:54128662-54128681 | Msa1333830:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_4:54128854-54128873 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_4:54128921-54128940 | Msa1333830:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_4:54128971-54128990 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_4:54129063-54129082 | Msa1333830:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_4:54129074-54129093 | Msa1333830:five_prime_UTR | 40.0% |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_4:54127567-54127586 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_4:54127881-54127900 | Msa1333830:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_4:54128102-54128121 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_4:54128439-54128458 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_4:54128442-54128461 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_4:54128630-54128649 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_4:54128734-54128753 | Msa1333830:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_4:54128735-54128754 | Msa1333830:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_4:54128743-54128762 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_4:54128749-54128768 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_4:54128746-54128765 | Msa1333830:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_4:54128838-54128857 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_4:54128879-54128898 | Msa1333830:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_4:54128912-54128931 | Msa1333830:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_4:54129029-54129048 | Msa1333830:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_4:54129092-54129111 | Msa1333830:five_prime_UTR | 45.0% | |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_4:54127567-54127586 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_4:54127881-54127900 | Msa1333830:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_4:54128102-54128121 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_4:54128439-54128458 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_4:54128442-54128461 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_4:54128630-54128649 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_4:54128734-54128753 | Msa1333830:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_4:54128735-54128754 | Msa1333830:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_4:54128743-54128762 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_4:54128749-54128768 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_4:54128746-54128765 | Msa1333830:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_4:54128838-54128857 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_4:54128879-54128898 | Msa1333830:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_4:54128912-54128931 | Msa1333830:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_4:54129029-54129048 | Msa1333830:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_4:54129092-54129111 | Msa1333830:five_prime_UTR | 45.0% | |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_4:54128809-54128828 | Msa1333830:intron | 5.0% |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_4:54128809-54128828 | Msa1333830:intron | 5.0% |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_4:54127532-54127551 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_4:54127533-54127552 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_4:54127558-54127577 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_4:54127568-54127587 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_4:54127599-54127618 | Msa1333830:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_4:54127621-54127640 | Msa1333830:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_4:54127731-54127750 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_4:54128949-54128968 | Msa1333830:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_4:54128981-54129000 | Msa1333830:CDS | 50.0% | |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_4:54127532-54127551 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_4:54127533-54127552 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_4:54127558-54127577 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_4:54127568-54127587 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_4:54127599-54127618 | Msa1333830:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_4:54127621-54127640 | Msa1333830:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_4:54127731-54127750 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_4:54128949-54128968 | Msa1333830:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_4:54128981-54129000 | Msa1333830:CDS | 50.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_4:54127543-54127562 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_4:54127548-54127567 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_4:54127557-54127576 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_4:54127590-54127609 | Msa1333830:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_4:54127602-54127621 | Msa1333830:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_4:54127715-54127734 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_4:54127721-54127740 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_4:54127719-54127738 | Msa1333830:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_4:54128899-54128918 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_4:54129000-54129019 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_4:54129000-54129019 | Msa1333830:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_4:54129018-54129037 | None:intergenic | 55.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_4:54127543-54127562 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_4:54127548-54127567 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_4:54127557-54127576 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_4:54127590-54127609 | Msa1333830:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_4:54127602-54127621 | Msa1333830:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_4:54127715-54127734 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_4:54127721-54127740 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_4:54127719-54127738 | Msa1333830:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_4:54128899-54128918 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_4:54129000-54129019 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_4:54129000-54129019 | Msa1333830:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_4:54129018-54129037 | None:intergenic | 55.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_4:54127549-54127568 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_4:54127722-54127741 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_4:54128894-54128913 | Msa1333830:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_4:54129006-54129025 | Msa1333830:CDS | 60.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_4:54127549-54127568 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_4:54127722-54127741 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_4:54128894-54128913 | Msa1333830:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_4:54129006-54129025 | Msa1333830:CDS | 60.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_4:54129012-54129031 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_4:54129009-54129028 | Msa1333830:CDS | 65.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_4:54129012-54129031 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_4:54129009-54129028 | Msa1333830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54127506 | 54129155 | 54127506 | ID=Msa1333830;Name=Msa1333830 |
| chr8_4 | mRNA | 54127506 | 54129155 | 54127506 | ID=Msa1333830-mRNA-1;Parent=Msa1333830;Name=Msa1333830-mRNA-1;_AED=0.24;_eAED=0.24;_QI=112|0.5|0.66|1|1|1|3|0|146 |
| chr8_4 | exon | 54127506 | 54127770 | 54127506 | ID=Msa1333830-mRNA-1:exon:16815;Parent=Msa1333830-mRNA-1 |
| chr8_4 | exon | 54127978 | 54128030 | 54127978 | ID=Msa1333830-mRNA-1:exon:16814;Parent=Msa1333830-mRNA-1 |
| chr8_4 | exon | 54128921 | 54129155 | 54128921 | ID=Msa1333830-mRNA-1:exon:16813;Parent=Msa1333830-mRNA-1 |
| chr8_4 | five_prime_UTR | 54129044 | 54129155 | 54129044 | ID=Msa1333830-mRNA-1:five_prime_utr;Parent=Msa1333830-mRNA-1 |
| chr8_4 | CDS | 54128921 | 54129043 | 54128921 | ID=Msa1333830-mRNA-1:cds;Parent=Msa1333830-mRNA-1 |
| chr8_4 | CDS | 54127978 | 54128030 | 54127978 | ID=Msa1333830-mRNA-1:cds;Parent=Msa1333830-mRNA-1 |
| chr8_4 | CDS | 54127506 | 54127770 | 54127506 | ID=Msa1333830-mRNA-1:cds;Parent=Msa1333830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
