Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215690 | G7JGL2 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 1.09e-36 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067060 | Msa1215690 | 0.803448 | 3.468731e-49 | -8.615850e-47 |
| Msa0711010 | Msa1215690 | 0.803642 | 3.161711e-49 | -8.615850e-47 |
| Msa0778600 | Msa1215690 | 0.802984 | 4.328452e-49 | -8.615850e-47 |
| Msa0141640 | Msa1215690 | 0.804409 | 2.190406e-49 | -8.615850e-47 |
| Msa0223090 | Msa1215690 | 0.821834 | 3.269547e-53 | -8.615850e-47 |
| Msa0223300 | Msa1215690 | 0.819322 | 1.234228e-52 | -8.615850e-47 |
| Msa0223370 | Msa1215690 | 0.818678 | 1.729139e-52 | -8.615850e-47 |
| Msa0302640 | Msa1215690 | 0.813360 | 2.662126e-51 | -8.615850e-47 |
| Msa0339880 | Msa1215690 | 0.813102 | 3.032851e-51 | -8.615850e-47 |
| Msa1116660 | Msa1215690 | 0.806150 | 9.459339e-50 | -8.615850e-47 |
| Msa1215330 | Msa1215690 | 0.812604 | 3.899318e-51 | -8.615850e-47 |
| Msa1215580 | Msa1215690 | 0.803621 | 3.194216e-49 | -8.615850e-47 |
| Msa1215690 | Msa1221120 | 0.800465 | 1.423157e-48 | -8.615850e-47 |
| Msa1215690 | Msa1265450 | 0.804292 | 2.317181e-49 | -8.615850e-47 |
| Msa1215690 | Msa1332370 | 0.995894 | 4.611261e-221 | -8.615850e-47 |
| Msa1215690 | Msa1333830 | 0.990210 | 1.446089e-181 | -8.615850e-47 |
| Msa1215690 | Msa1364410 | 0.801756 | 7.747086e-49 | -8.615850e-47 |
| Msa1215690 | Msa1404870 | 0.815535 | 8.796509e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215690 | MtrunA17_Chr4g0064861 | 84.940 | 166 | 5 | 1 | 1 | 146 | 33 | 198 | 2.10e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTTCTTCTTCTTAGA+AGG | 0.292012 | 8_1:+77023193 | None:intergenic |
| GTGGTTTCATCTCTCGCCTT+TGG | 0.343143 | 8_1:-77024709 | Msa1215690:CDS |
| ACTTTGGGTTTGGTCCCGTT+AGG | 0.390048 | 8_1:+77024800 | None:intergenic |
| GAGGAGGTAAGCGAGGGATT+TGG | 0.392521 | 8_1:+77024618 | None:intergenic |
| GAGGGTGTGTGCGGGAACTT+TGG | 0.410958 | 8_1:+77024784 | None:intergenic |
| AGGGTGTGTGCGGGAACTTT+GGG | 0.417124 | 8_1:+77024785 | None:intergenic |
| ATCCTCATCGTCGTCGTCCT+CGG | 0.425481 | 8_1:+77023432 | None:intergenic |
| GTGTGCGGGAACTTTGGGTT+TGG | 0.425723 | 8_1:+77024790 | None:intergenic |
| TCACTTCCTCCTGCACCGTT+TGG | 0.426939 | 8_1:+77023313 | None:intergenic |
| CTTTGGGTTTGGTCCCGTTA+GGG | 0.437105 | 8_1:+77024801 | None:intergenic |
| CCTCCTGCACCGTTTGGCAC+AGG | 0.503261 | 8_1:+77023319 | None:intergenic |
| GATCGAGTTGTTGTTTCCAA+AGG | 0.517156 | 8_1:+77024693 | None:intergenic |
| TTTGGCACAGGATCGTCCTC+AGG | 0.525514 | 8_1:+77023331 | None:intergenic |
| CATTTCTTCTTCTTAGAAGG+TGG | 0.536270 | 8_1:+77023196 | None:intergenic |
| ATCTTCGTCATCTTCATCAC+CGG | 0.553872 | 8_1:+77023360 | None:intergenic |
| CAATCATTTGATATCACCAA+TGG | 0.555785 | 8_1:-77023674 | Msa1215690:CDS |
| TGAGGATGAAGACGAAGAAG+AGG | 0.579512 | 8_1:-77023236 | Msa1215690:CDS |
| TGATATCACCAATGGATGGA+AGG | 0.586037 | 8_1:-77023666 | Msa1215690:intron |
| GACGATGATGAGGACTTCTC+CGG | 0.589732 | 8_1:-77023379 | Msa1215690:CDS |
| CGCTATGAGGAGGTAAGCGA+GGG | 0.590126 | 8_1:+77024612 | None:intergenic |
| GAAATCGAGAGGGTGTGTGC+GGG | 0.591974 | 8_1:+77024776 | None:intergenic |
| AGAAATCGAGAGGGTGTGTG+CGG | 0.592587 | 8_1:+77024775 | None:intergenic |
| GAGGACGATCCTGTGCCAAA+CGG | 0.593735 | 8_1:-77023328 | Msa1215690:CDS |
| CATTTGATATCACCAATGGA+TGG | 0.597818 | 8_1:-77023670 | Msa1215690:CDS |
| GATGACGATGACAATGATGA+TGG | 0.606368 | 8_1:-77023265 | Msa1215690:CDS |
| CCTGTGCCAAACGGTGCAGG+AGG | 0.611521 | 8_1:-77023319 | Msa1215690:CDS |
| AACCGAGGACGACGACGATG+AGG | 0.613539 | 8_1:-77023434 | Msa1215690:CDS |
| ATAGGAAGTATACCGCTATG+AGG | 0.615472 | 8_1:+77024599 | None:intergenic |
| CCGCTATGAGGAGGTAAGCG+AGG | 0.617664 | 8_1:+77024611 | None:intergenic |
| CAATGATGATGGAGAAGATG+AGG | 0.624046 | 8_1:-77023254 | Msa1215690:CDS |
| AGGAAGTGATGACGATGATG+AGG | 0.631982 | 8_1:-77023299 | Msa1215690:CDS |
| AGTACTCACAGCGGCAACAA+TGG | 0.635632 | 8_1:-77024731 | Msa1215690:exon |
| GGAAGTATACCGCTATGAGG+AGG | 0.668264 | 8_1:+77024602 | None:intergenic |
| TGACGAAGATGCTGATCCTG+AGG | 0.669694 | 8_1:-77023347 | Msa1215690:CDS |
| ACTCACAGCGGCAACAATGG+TGG | 0.673138 | 8_1:-77024728 | Msa1215690:exon |
| CAAAGATGGTAGTGAAACCG+AGG | 0.679946 | 8_1:-77023449 | Msa1215690:intron |
| GCTTCGCTAGAGAAATCGAG+AGG | 0.686022 | 8_1:+77024765 | None:intergenic |
| TGACGATGATGTGAATGATG+AGG | 0.694178 | 8_1:-77023407 | Msa1215690:CDS |
| TGAGGATGATGACGATGATG+AGG | 0.697122 | 8_1:-77023389 | Msa1215690:CDS |
| CTTCGCTAGAGAAATCGAGA+GGG | 0.706182 | 8_1:+77024766 | None:intergenic |
| CCTCGCTTACCTCCTCATAG+CGG | 0.734427 | 8_1:-77024611 | Msa1215690:intron |
| CAGCAGCACAGTACTCACAG+CGG | 0.771096 | 8_1:-77024740 | Msa1215690:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_1:77024489-77024508 | None:intergenic | 10.0% |
| !!! | AAATAAAAAATCAAGATTTT+TGG | + | chr8_1:77024489-77024508 | None:intergenic | 10.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_1:77023649-77023668 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_1:77023650-77023669 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_1:77023966-77023985 | None:intergenic | 15.0% |
| !! | AAAACACTTAATACTAAATA+GGG | + | chr8_1:77023649-77023668 | None:intergenic | 15.0% |
| !! | TAAAACACTTAATACTAAAT+AGG | + | chr8_1:77023650-77023669 | None:intergenic | 15.0% |
| !! | TATAATCATAGATACAAAAA+AGG | + | chr8_1:77023966-77023985 | None:intergenic | 15.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_1:77023655-77023674 | Msa1215690:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_1:77023959-77023978 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_1:77024397-77024416 | None:intergenic | 20.0% |
| !!! | GTATTAAGTGTTTTAAATAG+CGG | - | chr8_1:77023655-77023674 | Msa1215690:intron | 20.0% |
| !! | ATAGATACAAAAAAGGTAAA+AGG | + | chr8_1:77023959-77023978 | None:intergenic | 20.0% |
| !! | CAATCACAAAAATTTGAATA+AGG | + | chr8_1:77024397-77024416 | None:intergenic | 20.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_1:77023204-77023223 | Msa1215690:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_1:77023513-77023532 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_1:77023514-77023533 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_1:77023809-77023828 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_1:77023814-77023833 | Msa1215690:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_1:77023815-77023834 | Msa1215690:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_1:77024057-77024076 | Msa1215690:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_1:77024221-77024240 | Msa1215690:intron | 25.0% |
| ! | ATTTGAATGAAAAACCCTAA+CGG | - | chr8_1:77023204-77023223 | Msa1215690:CDS | 25.0% |
| ! | AAAACTCGTTCTTTAATCTA+GGG | + | chr8_1:77023513-77023532 | None:intergenic | 25.0% |
| ! | TAAAACTCGTTCTTTAATCT+AGG | + | chr8_1:77023514-77023533 | None:intergenic | 25.0% |
| ! | CACATTATCTACTAAATTGT+TGG | + | chr8_1:77023809-77023828 | None:intergenic | 25.0% |
| ! | TTAGTAGATAATGTGTGAAA+AGG | - | chr8_1:77023814-77023833 | Msa1215690:intron | 25.0% |
| ! | TAGTAGATAATGTGTGAAAA+GGG | - | chr8_1:77023815-77023834 | Msa1215690:intron | 25.0% |
| !! | TGAAATCTGATAGTTTTTGT+TGG | - | chr8_1:77024057-77024076 | Msa1215690:intron | 25.0% |
| !!! | TTGCTAATTTGCTTTTCAAT+AGG | - | chr8_1:77024221-77024240 | Msa1215690:intron | 25.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_1:77023205-77023224 | Msa1215690:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_1:77023441-77023460 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_1:77023543-77023562 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_1:77023543-77023562 | Msa1215690:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_1:77023544-77023563 | Msa1215690:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_1:77023775-77023794 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_1:77023781-77023800 | Msa1215690:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_1:77023847-77023866 | Msa1215690:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_1:77023862-77023881 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_1:77023865-77023884 | Msa1215690:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_1:77023866-77023885 | Msa1215690:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_1:77024012-77024031 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_1:77024013-77024032 | Msa1215690:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_1:77024224-77024243 | Msa1215690:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_1:77024345-77024364 | Msa1215690:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_1:77024364-77024383 | None:intergenic | 30.0% |
| TTTGAATGAAAAACCCTAAC+GGG | - | chr8_1:77023205-77023224 | Msa1215690:CDS | 30.0% | |
| GAACTGAAAAATTGTGAGAT+AGG | + | chr8_1:77023441-77023460 | None:intergenic | 30.0% | |
| AGTCACTTGTATCAAATCAT+TGG | + | chr8_1:77023543-77023562 | None:intergenic | 30.0% | |
| ATGATTTGATACAAGTGACT+AGG | - | chr8_1:77023543-77023562 | Msa1215690:intron | 30.0% | |
| TGATTTGATACAAGTGACTA+GGG | - | chr8_1:77023544-77023563 | Msa1215690:intron | 30.0% | |
| TTAGAGGTAATCATTAGAGA+GGG | + | chr8_1:77023775-77023794 | None:intergenic | 30.0% | |
| ATGATTACCTCTAAGTTGTT+TGG | - | chr8_1:77023781-77023800 | Msa1215690:intron | 30.0% | |
| !! | AGAAATTTGTTGCCAAGTTT+AGG | - | chr8_1:77023847-77023866 | Msa1215690:intron | 30.0% |
| CTAGAAAAATCTCCTAAACT+TGG | + | chr8_1:77023862-77023881 | None:intergenic | 30.0% | |
| !!! | TTAGGAGATTTTTCTAGAAC+AGG | - | chr8_1:77023865-77023884 | Msa1215690:intron | 30.0% |
| !!! | TAGGAGATTTTTCTAGAACA+GGG | - | chr8_1:77023866-77023885 | Msa1215690:intron | 30.0% |
| CAAAATGACAATTGGACAAT+TGG | + | chr8_1:77024012-77024031 | None:intergenic | 30.0% | |
| !!! | TTGTCCAATTGTCATTTTGT+CGG | - | chr8_1:77024013-77024032 | Msa1215690:intron | 30.0% |
| !!! | CTAATTTGCTTTTCAATAGG+TGG | - | chr8_1:77024224-77024243 | Msa1215690:intron | 30.0% |
| CAATCATTTGATATCACCAA+TGG | - | chr8_1:77024345-77024364 | Msa1215690:intron | 30.0% | |
| !! | TATTTTTACCTTCCATCCAT+TGG | + | chr8_1:77024364-77024383 | None:intergenic | 30.0% |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_1:77023592-77023611 | Msa1215690:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_1:77023699-77023718 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_1:77023776-77023795 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_1:77023887-77023906 | Msa1215690:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_1:77024014-77024033 | Msa1215690:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_1:77024047-77024066 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTTTTCTCCAGAC+TGG | - | chr8_1:77024304-77024323 | Msa1215690:intron | 35.0% |
| CATTTGATATCACCAATGGA+TGG | - | chr8_1:77024349-77024368 | Msa1215690:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_1:77024555-77024574 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_1:77024556-77024575 | Msa1215690:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_1:77024826-77024845 | None:intergenic | 35.0% | |
| GCTTTAATGTTAAAGCGTAG+TGG | - | chr8_1:77023592-77023611 | Msa1215690:intron | 35.0% | |
| AACGACTTCTTCAAATTCTG+CGG | + | chr8_1:77023699-77023718 | None:intergenic | 35.0% | |
| CTTAGAGGTAATCATTAGAG+AGG | + | chr8_1:77023776-77023795 | None:intergenic | 35.0% | |
| !!! | GGTCTTATTTTGTTTGTGTC+TGG | - | chr8_1:77023887-77023906 | Msa1215690:intron | 35.0% |
| !!! | TGTCCAATTGTCATTTTGTC+GGG | - | chr8_1:77024014-77024033 | Msa1215690:intron | 35.0% |
| TCAGATTTCACAGTAATGAG+CGG | + | chr8_1:77024047-77024066 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTTTTCTCCAGAC+TGG | - | chr8_1:77024304-77024323 | Msa1215690:intron | 35.0% |
| CATTTGATATCACCAATGGA+TGG | - | chr8_1:77024349-77024368 | Msa1215690:intron | 35.0% | |
| CTTTGTTCTCTTCACAAGTA+TGG | + | chr8_1:77024555-77024574 | None:intergenic | 35.0% | |
| ACTTGTGAAGAGAACAAAGA+TGG | - | chr8_1:77024556-77024575 | Msa1215690:intron | 35.0% | |
| CATTTCTTCTTCTTAGAAGG+TGG | + | chr8_1:77024826-77024845 | None:intergenic | 35.0% | |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_1:77023329-77023348 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_1:77023423-77023442 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_1:77023551-77023570 | Msa1215690:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_1:77023728-77023747 | Msa1215690:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_1:77024020-77024039 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_1:77024045-77024064 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_1:77024046-77024065 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_1:77024118-77024137 | Msa1215690:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_1:77024353-77024372 | Msa1215690:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_1:77024545-77024564 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_1:77024612-77024631 | Msa1215690:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_1:77024662-77024681 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_1:77024754-77024773 | Msa1215690:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_1:77024765-77024784 | Msa1215690:five_prime_UTR | 40.0% |
| !! | GATCGAGTTGTTGTTTCCAA+AGG | + | chr8_1:77023329-77023348 | None:intergenic | 40.0% |
| ! | ATAGGAAGTATACCGCTATG+AGG | + | chr8_1:77023423-77023442 | None:intergenic | 40.0% |
| ATACAAGTGACTAGGGTTTG+TGG | - | chr8_1:77023551-77023570 | Msa1215690:intron | 40.0% | |
| GATCTGCAATTGACAACACT+AGG | - | chr8_1:77023728-77023747 | Msa1215690:intron | 40.0% | |
| AAGCCCGACAAAATGACAAT+TGG | + | chr8_1:77024020-77024039 | None:intergenic | 40.0% | |
| AGATTTCACAGTAATGAGCG+GGG | + | chr8_1:77024045-77024064 | None:intergenic | 40.0% | |
| CAGATTTCACAGTAATGAGC+GGG | + | chr8_1:77024046-77024065 | None:intergenic | 40.0% | |
| !!! | TTGCATACCTCCTTTTTTGC+TGG | - | chr8_1:77024118-77024137 | Msa1215690:intron | 40.0% |
| TGATATCACCAATGGATGGA+AGG | - | chr8_1:77024353-77024372 | Msa1215690:intron | 40.0% | |
| TTCACAAGTATGGTTTCGCT+TGG | + | chr8_1:77024545-77024564 | None:intergenic | 40.0% | |
| TGACGATGATGTGAATGATG+AGG | - | chr8_1:77024612-77024631 | Msa1215690:CDS | 40.0% | |
| ATCTTCGTCATCTTCATCAC+CGG | + | chr8_1:77024662-77024681 | None:intergenic | 40.0% | |
| GATGACGATGACAATGATGA+TGG | - | chr8_1:77024754-77024773 | Msa1215690:five_prime_UTR | 40.0% | |
| !! | CAATGATGATGGAGAAGATG+AGG | - | chr8_1:77024765-77024784 | Msa1215690:five_prime_UTR | 40.0% |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_1:77023256-77023275 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_1:77023570-77023589 | Msa1215690:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_1:77023791-77023810 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_1:77024128-77024147 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_1:77024131-77024150 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_1:77024321-77024340 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_1:77024425-77024444 | Msa1215690:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_1:77024426-77024445 | Msa1215690:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_1:77024434-77024453 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_1:77024440-77024459 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_1:77024437-77024456 | Msa1215690:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_1:77024529-77024548 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_1:77024570-77024589 | Msa1215690:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_1:77024603-77024622 | Msa1215690:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_1:77024720-77024739 | Msa1215690:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_1:77024783-77024802 | Msa1215690:five_prime_UTR | 45.0% | |
| CTTCGCTAGAGAAATCGAGA+GGG | + | chr8_1:77023256-77023275 | None:intergenic | 45.0% | |
| ! | GTGGTTTGAGACATTCGTAG+TGG | - | chr8_1:77023570-77023589 | Msa1215690:intron | 45.0% |
| !! | GTTGGTGCCAAACAACTTAG+AGG | + | chr8_1:77023791-77023810 | None:intergenic | 45.0% |
| ACAGCTTCCAGCAAAAAAGG+AGG | + | chr8_1:77024128-77024147 | None:intergenic | 45.0% | |
| CGTACAGCTTCCAGCAAAAA+AGG | + | chr8_1:77024131-77024150 | None:intergenic | 45.0% | |
| CAGTAAGAAGAGATCCAGTC+TGG | + | chr8_1:77024321-77024340 | None:intergenic | 45.0% | |
| TTCAAGCCAACTCCACTTAG+TGG | - | chr8_1:77024425-77024444 | Msa1215690:intron | 45.0% | |
| TCAAGCCAACTCCACTTAGT+GGG | - | chr8_1:77024426-77024445 | Msa1215690:intron | 45.0% | |
| CTAATCCCACTAAGTGGAGT+TGG | + | chr8_1:77024434-77024453 | None:intergenic | 45.0% | |
| CCAAGTCTAATCCCACTAAG+TGG | + | chr8_1:77024440-77024459 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATTAGACT+TGG | - | chr8_1:77024437-77024456 | Msa1215690:intron | 45.0% | |
| CGCTTGGACAATTGATCTAG+AGG | + | chr8_1:77024529-77024548 | None:intergenic | 45.0% | |
| ! | CAAAGATGGTAGTGAAACCG+AGG | - | chr8_1:77024570-77024589 | Msa1215690:intron | 45.0% |
| ! | TGAGGATGATGACGATGATG+AGG | - | chr8_1:77024603-77024622 | Msa1215690:intron | 45.0% |
| ! | AGGAAGTGATGACGATGATG+AGG | - | chr8_1:77024720-77024739 | Msa1215690:exon | 45.0% |
| TGAGGATGAAGACGAAGAAG+AGG | - | chr8_1:77024783-77024802 | Msa1215690:five_prime_UTR | 45.0% | |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_1:77024500-77024519 | Msa1215690:intron | 5.0% |
| !!! | TTTTTATTTTATTTTTGATT+AGG | - | chr8_1:77024500-77024519 | Msa1215690:intron | 5.0% |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_1:77023221-77023240 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_1:77023222-77023241 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_1:77023247-77023266 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_1:77023257-77023276 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_1:77023288-77023307 | Msa1215690:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_1:77023310-77023329 | Msa1215690:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_1:77023420-77023439 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_1:77024640-77024659 | Msa1215690:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_1:77024672-77024691 | Msa1215690:CDS | 50.0% | |
| ! | CTTTGGGTTTGGTCCCGTTA+GGG | + | chr8_1:77023221-77023240 | None:intergenic | 50.0% |
| ! | ACTTTGGGTTTGGTCCCGTT+AGG | + | chr8_1:77023222-77023241 | None:intergenic | 50.0% |
| ! | AGAAATCGAGAGGGTGTGTG+CGG | + | chr8_1:77023247-77023266 | None:intergenic | 50.0% |
| GCTTCGCTAGAGAAATCGAG+AGG | + | chr8_1:77023257-77023276 | None:intergenic | 50.0% | |
| AGTACTCACAGCGGCAACAA+TGG | - | chr8_1:77023288-77023307 | Msa1215690:CDS | 50.0% | |
| GTGGTTTCATCTCTCGCCTT+TGG | - | chr8_1:77023310-77023329 | Msa1215690:CDS | 50.0% | |
| ! | GGAAGTATACCGCTATGAGG+AGG | + | chr8_1:77023420-77023439 | None:intergenic | 50.0% |
| GACGATGATGAGGACTTCTC+CGG | - | chr8_1:77024640-77024659 | Msa1215690:CDS | 50.0% | |
| TGACGAAGATGCTGATCCTG+AGG | - | chr8_1:77024672-77024691 | Msa1215690:CDS | 50.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_1:77023232-77023251 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_1:77023237-77023256 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_1:77023246-77023265 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_1:77023279-77023298 | Msa1215690:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_1:77023291-77023310 | Msa1215690:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_1:77023404-77023423 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_1:77023410-77023429 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_1:77023408-77023427 | Msa1215690:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_1:77024590-77024609 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_1:77024691-77024710 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_1:77024691-77024710 | Msa1215690:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_1:77024709-77024728 | None:intergenic | 55.0% | |
| ! | GTGTGCGGGAACTTTGGGTT+TGG | + | chr8_1:77023232-77023251 | None:intergenic | 55.0% |
| AGGGTGTGTGCGGGAACTTT+GGG | + | chr8_1:77023237-77023256 | None:intergenic | 55.0% | |
| ! | GAAATCGAGAGGGTGTGTGC+GGG | + | chr8_1:77023246-77023265 | None:intergenic | 55.0% |
| CAGCAGCACAGTACTCACAG+CGG | - | chr8_1:77023279-77023298 | Msa1215690:CDS | 55.0% | |
| ACTCACAGCGGCAACAATGG+TGG | - | chr8_1:77023291-77023310 | Msa1215690:CDS | 55.0% | |
| GAGGAGGTAAGCGAGGGATT+TGG | + | chr8_1:77023404-77023423 | None:intergenic | 55.0% | |
| CGCTATGAGGAGGTAAGCGA+GGG | + | chr8_1:77023410-77023429 | None:intergenic | 55.0% | |
| CCTCGCTTACCTCCTCATAG+CGG | - | chr8_1:77023408-77023427 | Msa1215690:CDS | 55.0% | |
| ATCCTCATCGTCGTCGTCCT+CGG | + | chr8_1:77024590-77024609 | None:intergenic | 55.0% | |
| TTTGGCACAGGATCGTCCTC+AGG | + | chr8_1:77024691-77024710 | None:intergenic | 55.0% | |
| GAGGACGATCCTGTGCCAAA+CGG | - | chr8_1:77024691-77024710 | Msa1215690:CDS | 55.0% | |
| TCACTTCCTCCTGCACCGTT+TGG | + | chr8_1:77024709-77024728 | None:intergenic | 55.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_1:77023238-77023257 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_1:77023411-77023430 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_1:77024585-77024604 | Msa1215690:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_1:77024697-77024716 | Msa1215690:CDS | 60.0% | |
| ! | GAGGGTGTGTGCGGGAACTT+TGG | + | chr8_1:77023238-77023257 | None:intergenic | 60.0% |
| CCGCTATGAGGAGGTAAGCG+AGG | + | chr8_1:77023411-77023430 | None:intergenic | 60.0% | |
| AACCGAGGACGACGACGATG+AGG | - | chr8_1:77024585-77024604 | Msa1215690:intron | 60.0% | |
| GATCCTGTGCCAAACGGTGC+AGG | - | chr8_1:77024697-77024716 | Msa1215690:CDS | 60.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_1:77024703-77024722 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_1:77024700-77024719 | Msa1215690:CDS | 65.0% | |
| CCTCCTGCACCGTTTGGCAC+AGG | + | chr8_1:77024703-77024722 | None:intergenic | 65.0% | |
| CCTGTGCCAAACGGTGCAGG+AGG | - | chr8_1:77024700-77024719 | Msa1215690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77023195 | 77024846 | 77023195 | ID=Msa1215690;Name=Msa1215690 |
| chr8_1 | mRNA | 77023195 | 77024846 | 77023195 | ID=Msa1215690-mRNA-1;Parent=Msa1215690;Name=Msa1215690-mRNA-1;_AED=0.26;_eAED=0.26;_QI=112|0.5|0.66|1|1|1|3|0|146 |
| chr8_1 | exon | 77023195 | 77023459 | 77023195 | ID=Msa1215690-mRNA-1:exon:26567;Parent=Msa1215690-mRNA-1 |
| chr8_1 | exon | 77023667 | 77023719 | 77023667 | ID=Msa1215690-mRNA-1:exon:26566;Parent=Msa1215690-mRNA-1 |
| chr8_1 | exon | 77024612 | 77024846 | 77024612 | ID=Msa1215690-mRNA-1:exon:26565;Parent=Msa1215690-mRNA-1 |
| chr8_1 | five_prime_UTR | 77024735 | 77024846 | 77024735 | ID=Msa1215690-mRNA-1:five_prime_utr;Parent=Msa1215690-mRNA-1 |
| chr8_1 | CDS | 77024612 | 77024734 | 77024612 | ID=Msa1215690-mRNA-1:cds;Parent=Msa1215690-mRNA-1 |
| chr8_1 | CDS | 77023667 | 77023719 | 77023667 | ID=Msa1215690-mRNA-1:cds;Parent=Msa1215690-mRNA-1 |
| chr8_1 | CDS | 77023195 | 77023459 | 77023195 | ID=Msa1215690-mRNA-1:cds;Parent=Msa1215690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
